ID FN543502; SV 1; circular; genomic DNA; STD; PRO; 5346659 BP. XX AC FN543502; XX PR Project:PRJEA34685; XX DT 05-JAN-2010 (Rel. 103, Created) DT 05-JAN-2010 (Rel. 103, Last updated, Version 1) XX DE Citrobacter rodentium ICC168, complete genome XX KW complete genome. XX OS Citrobacter rodentium ICC168 OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; OC Enterobacteriaceae; Citrobacter. XX RN [1] RP 1-5346659 RA Petty N.K.; RT ; RL Submitted (19-AUG-2009) to the INSDC. RL Petty N.K., Pathogen Genomics, Sanger Institute, Wellcome Trust Genome RL Campus, Cambridge, CB10 1SA, UNITED KINGDOM. XX RN [2] RX DOI; 10.1128/JB.01144-09. RX PUBMED; 19897651. RA Petty N.K., Bulgin R., Crepin V.F., Cerdeno-Tarraga A.M., Schroeder G.N., RA Quail M.A., Lennard N., Corton C., Barron A., Clark L., Toribio A.L., RA Parkhill J., Dougan G., Frankel G., Thomson N.R.; RT "The Citrobacter rodentium genome sequence reveals convergent evolution RT with human pathogenic Escherichia coli"; RL J. Bacteriol. 192(2):525-538(2010). XX DR GR; FN543502_GR. DR SILVA-LSU; FN543502. DR SILVA-SSU; FN543502. XX FH Key Location/Qualifiers FH FT source 1..5346659 FT /organism="Citrobacter rodentium ICC168" FT /strain="ICC168" FT /mol_type="genomic DNA" FT /db_xref="taxon:637910" FT misc_RNA 160..287 FT /note="Rfam:RF00506;Thr_leader;Score=126.03;positions 1 to FT 60" FT CDS 166..231 FT /transl_table=11 FT /gene="thrL" FT /locus_tag="ROD__00001" FT /product="Thr operon leader peptide (Thr operon FT attenuator)" FT /db_xref="GOA:D2TGH6" FT /db_xref="InterPro:IPR011720" FT /db_xref="UniProtKB/TrEMBL:D2TGH6" FT /protein_id="CBG86780.1" FT /translation="MKRISTTIITTTTITTGNGAG" FT misc_feature 166..228 FT /locus_tag="ROD_00001" FT /note="HMMPfam hit to PF08254, Thr operon leader peptide, FT score 7.6e-07" FT /inference="protein motif:PFAM:PF08254" FT CDS 313..2775 FT /transl_table=11 FT /gene="thrA" FT /locus_tag="ROD_00011" FT /product="bifunctional aspartokinase I/homoserine FT dehydrogenase I" FT /EC_number="2.7.2.4" FT /EC_number="1.1.1.3" FT /db_xref="GOA:D2TGQ2" FT /db_xref="InterPro:IPR001048" FT /db_xref="InterPro:IPR001341" FT /db_xref="InterPro:IPR001342" FT /db_xref="InterPro:IPR002912" FT /db_xref="InterPro:IPR005106" FT /db_xref="InterPro:IPR011147" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR018042" FT /db_xref="InterPro:IPR019811" FT /db_xref="UniProtKB/TrEMBL:D2TGQ2" FT /protein_id="CBA35022.1" FT /translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITN FT HLVAMIEKTIGGQDALPNISDAERIFAELLTGLAQVQTGFPLAQLKAFVEQEFAQIKHV FT LHGISLLGQCPDSINAALICRGEKMSIAIMAGLLEARGHHVTVIDPVEKLLAVGHYLES FT TVDIAESTRRIAAARIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADC FT CEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCL FT IKNTGNPQAPGTLIGASRDEDDLPVKGISNLNNMAMFNVSGPGMKGMIGMAARVFAVMS FT RSGISVVLITQSSSEYSISFCVPQADCARAQRALQDEFYLELKEGLLEPLAVTERLAII FT SVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQM FT LFNTDQVIEVFVIGVGGVGGALLEQLKRQQTWLKSKHIDLRVCGVANSRALLTNVHGLN FT LENWQAALAEAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVT FT PNKKANTSSMDYYHQLRFAAAKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELQKFSGI FT LSGSLSFIFGKLDEGMSLSEATKVAREMGYTEPDPRDDLSGMDVARKLLILARETGREL FT ELSDIVIEPVLPETFDNSGDVAAFMAKLPQLDDAFAARVAKARDEGKVLRYVGNIEEDG FT VCRVKIAEVDGNDPLYKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLR FT TLSWKLGV" FT misc_feature 313..1164 FT /gene="thrA" FT /locus_tag="ROD_00011" FT /note="HMMPfam hit to PF00696, FT Aspartate/glutamate/uridylate kinase, score 1.3e-64" FT /inference="protein motif:PFAM:PF00696" FT misc_feature 319..345 FT /note="PS00324 Aspartokinase signature." FT /inference="protein motif:Prosite:PS00324" FT misc_feature 1282..1449 FT /gene="thrA" FT /locus_tag="ROD_00011" FT /note="HMMPfam hit to PF01842, Amino acid-binding ACT, FT score 1.6e-05" FT /inference="protein motif:PFAM:PF01842" FT misc_feature 1510..1692 FT /gene="thrA" FT /locus_tag="ROD_00011" FT /note="HMMPfam hit to PF01842, Amino acid-binding ACT, FT score 3.8e-07" FT /inference="protein motif:PFAM:PF01842" FT misc_feature 1726..2130 FT /gene="thrA" FT /locus_tag="ROD_00011" FT /note="HMMPfam hit to PF03447, Aspartate/homoserine FT dehydrogenase, NAD-binding, score 1.1e-48" FT /inference="protein motif:PFAM:PF03447" FT misc_feature 2152..2745 FT /gene="thrA" FT /locus_tag="ROD_00011" FT /note="HMMPfam hit to PF00742, Homoserine dehydrogenase, FT catalytic, score 5.3e-104" FT /inference="protein motif:PFAM:PF00742" FT misc_feature 2290..2358 FT /note="PS01042 Homoserine dehydrogenase signature." FT /inference="protein motif:Prosite:PS01042" FT CDS 2778..3707 FT /transl_table=11 FT /gene="thrB" FT /locus_tag="ROD_00021" FT /product="homoserine kinase" FT /EC_number="2.7.1.39" FT /db_xref="GOA:D2TGH7" FT /db_xref="InterPro:IPR000870" FT /db_xref="InterPro:IPR006203" FT /db_xref="InterPro:IPR006204" FT /db_xref="InterPro:IPR013750" FT /db_xref="InterPro:IPR014721" FT /db_xref="InterPro:IPR020568" FT /db_xref="UniProtKB/TrEMBL:D2TGH7" FT /protein_id="CBG86781.1" FT /translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGSLLGDVVSVEAADAFS FT LTNQGRFADKLPPEPRENIVYQCWERFCQELGKSIPVAMSLEKNMPIGSGLGSSACSVV FT AALVAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENGIISQ FT QVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPQLA FT AKLMKDVIAEPHRERLLPGFSQARQAVAEIGALASGISGSGPTLFALCDKPDTAQRVAD FT WLGKNYLQNQEGFVHICRLDTAGARVLG" FT misc_feature 3024..3227 FT /gene="thrB" FT /locus_tag="ROD_00021" FT /note="HMMPfam hit to PF00288, GHMP kinase, score 3.1e-20" FT /inference="protein motif:PFAM:PF00288" FT misc_feature 3045..3080 FT /note="PS00627 GHMP kinases putative ATP-binding domain." FT /inference="protein motif:Prosite:PS00627" FT misc_feature 3048..3080 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 3450..3644 FT /gene="thrB" FT /locus_tag="ROD_00021" FT /note="HMMPfam hit to PF08544, GHMP kinase, C-terminal, FT score 3.6e-09" FT /inference="protein motif:PFAM:PF08544" FT CDS 3711..4997 FT /transl_table=11 FT /gene="thrC" FT /locus_tag="ROD_00031" FT /product="threonine synthase" FT /EC_number="4.2.3.1" FT /db_xref="GOA:D2TGI0" FT /db_xref="InterPro:IPR000634" FT /db_xref="InterPro:IPR001926" FT /db_xref="InterPro:IPR004450" FT /db_xref="UniProtKB/TrEMBL:D2TGI0" FT /protein_id="CBG86782.1" FT /translation="MKLYNLKDHNEQVNFAQAITQGLGKNQGLFFPHDLPEFSLTEVDE FT MLSQDFVSRSAKILSAFIGDEIPQQILEERVRAAFAFPAPVAQVESDVGCLELFHGPTL FT AFKDFGGRFMAQMLTQISGDRPVTILTATSGDTGAAVAHAFYGLPNVRVVILYPRGKIS FT PLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDHELKDALGLNSANSINISRLLAQ FT ICYYFEAVAQLPQEARNQLVISVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPR FT YLQEGKWTPKATQATLSNAMDVSQPNNWPRVEELFRRKIWRLNELGYAAVDDATTQETM FT RELQAKGYLSEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLELPKA FT LAERADLPLLSHELPADFAALRKLMMSRR" FT misc_feature 3939..4844 FT /gene="thrC" FT /locus_tag="ROD_00031" FT /note="HMMPfam hit to PF00291, Pyridoxal FT phosphate-dependent enzyme, beta subunit, score 1.7e-34" FT /inference="protein motif:PFAM:PF00291" FT misc_feature 3999..4043 FT /note="PS00165 Serine/threonine dehydratases FT pyridoxal-phosphate attachment site." FT /inference="protein motif:Prosite:PS00165" FT CDS complement(5147..5920) FT /transl_table=11 FT /locus_tag="ROD_00041" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR005583" FT /db_xref="UniProtKB/TrEMBL:D2TGI1" FT /protein_id="CBG86783.1" FT /translation="MLILISPAKTLDYQSPLATTRYTLPELLDHSRQLIDVAKKLSAPQ FT IGKLMGISDKLADLNATRFHDWQPDFTPDNARQAILAFKGDVYTGLQAETFSEADFDFA FT QQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENAKGKDLYQFWGDVITDKLNEALAAQG FT DQVVINLASDEYFKSVKPQKLNAELIKPVFLDEKNGTFKVISFYAKKARGLMSRYIIEN FT RLTKPEQLMDFSSEGYFFDEAASGHSELVFKRHEQ" FT misc_feature complement(5153..5920) FT /locus_tag="ROD_00041" FT /note="HMMPfam hit to PF03883, Protein of unknown function FT DUF328, score 1.5e-171" FT /inference="protein motif:PFAM:PF03883" FT misc_feature complement(5636..5683) FT /note="PS00225 Crystallins beta and gamma 'Greek key' motif FT signature." FT /inference="protein motif:Prosite:PS00225" FT CDS complement(5990..7420) FT /transl_table=11 FT /locus_tag="ROD_00051" FT /product="putative transport protein" FT /db_xref="GOA:D2TGI2" FT /db_xref="InterPro:IPR001463" FT /db_xref="UniProtKB/TrEMBL:D2TGI2" FT /protein_id="CBG86784.1" FT /translation="MADFFSFINDVLWGSVMIYLLFGAGCWFTFRTGGVQFRYIRQFGK FT SLKNSVAPQAGGLTSFQALSITLAARIGSGNVAGVALAITAGGPGAVFWMWLAALIGMA FT TSFAECSLAQLYKERDRHGQFRGGPAWYMSRGLGMRWMGVLFAIFLLLAYGLIFTSVQA FT NSVSRALHFAFDFPPLATGIMMALGALLVIMGGIKSVARIMQWFVPVMALVWAIASLSI FT CALHITQIPEVIISIVKCAFGWQEAAGGAAGYTLSQALTSGFQRSMFSNEAGMGSSPNA FT AAAAASWPPHPAAQGIVQMIGIFIDTLVVCSATAMLILLAGNDVAYGPMAGIQLIQKAM FT HTLVGDWGAAFVAVVMILFAFSSIVANYIYAENNLFFLRLDNVRTVWILRIATCVTVIA FT GTLLSFPMLWQLADMIMACMAITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRY FT PEIEQQLAPDAWDNIPRH" FT misc_feature complement(6047..7303) FT /locus_tag="ROD_00051" FT /note="HMMPfam hit to PF01235, Sodium:alanine symporter, FT score 5.7e-248" FT /inference="protein motif:PFAM:PF01235" FT misc_feature complement(join(6110..6178,6206..6265,6326..6394, FT 6452..6520,6746..6814,6842..6910,6947..7015,7127..7195, FT 7316..7384)) FT /locus_tag="ROD_00051" FT /note="9 probable transmembrane helices predicted for FT ROD00051 by TMHMM2.0 at aa 13-35, 76-98, 136-158, 171-193, FT 203-225, 301-323, 343-365, 386-405 and 415-437" FT misc_feature complement(7115..7162) FT /note="PS00873 Sodium:alanine symporter family signature." FT /inference="protein motif:Prosite:PS00873" FT misc_feature complement(7343..7375) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 7691..8644 FT /transl_table=11 FT /gene="talB" FT /locus_tag="ROD_00061" FT /product="transaldolase B" FT /EC_number="2.2.1.2" FT /db_xref="GOA:D2TGI4" FT /db_xref="InterPro:IPR001585" FT /db_xref="InterPro:IPR004730" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR018225" FT /db_xref="UniProtKB/TrEMBL:D2TGI4" FT /protein_id="CBG86785.1" FT /translation="MTDKLTSLRQFTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQI FT PEYRKLIDDAVAWAKQQSSDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYD FT TEASIAKAKRIIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQ FT ARACAEAGVYLISPFVGRILDWYKANTDKKEYAASEDPGVVSVTEIYEYYKQHGYETVV FT MGASFRNVGEILELAGCDRLTIAPALLKELAESEGAVERKLSFSGEVKARPERITESEF FT LWQHNQDPMAVDKLADGIRKFAVDQEKLEKMIGDLL" FT misc_feature 7727..8629 FT /gene="talB" FT /locus_tag="ROD_00061" FT /note="HMMPfam hit to PF00923, Transaldolase, score FT 3.2e-188" FT /inference="protein motif:PFAM:PF00923" FT misc_feature 7781..7807 FT /note="PS01054 Transaldolase signature 1." FT /inference="protein motif:Prosite:PS01054" FT misc_feature 8075..8128 FT /note="PS00958 Transaldolase active site." FT /inference="protein motif:Prosite:PS00958" FT CDS 8758..9345 FT /transl_table=11 FT /gene="mog" FT /locus_tag="ROD_00071" FT /product="molybdopterin biosynthesis Mog protein" FT /db_xref="GOA:D2TGI7" FT /db_xref="InterPro:IPR001453" FT /db_xref="InterPro:IPR008284" FT /db_xref="InterPro:IPR020817" FT /db_xref="UniProtKB/TrEMBL:D2TGI7" FT /protein_id="CBG86786.1" FT /translation="MNTLRIGLVSISDRASSGVYQDKGIPALEEWLASALTTPFEVQTR FT LIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAIADREMPGFGEQMR FT QISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDADGNVVVAGIFASVP FT YCIQLLDGPYVETAPAVVASFRPKSARRDINA" FT misc_feature 8776..9213 FT /gene="mog" FT /locus_tag="ROD_00071" FT /note="HMMPfam hit to PF00994, Molybdopterin binding, score FT 3.1e-30" FT /inference="protein motif:PFAM:PF00994" FT misc_feature 8962..9003 FT /note="PS01078 Molybdenum cofactor biosynthesis proteins FT signature 1." FT /inference="protein motif:Prosite:PS01078" FT CDS 9467..10774 FT /transl_table=11 FT /locus_tag="ROD_00081" FT /product="putative transport protein" FT /db_xref="GOA:D2TGI8" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TGI8" FT /protein_id="CBG86787.1" FT /translation="MSLHPRPLNRQDYKTLTLAALGGALEFYDFIIFVFFAAVVSELFF FT PADIPEWLRQLQTFGIFAAGYLARPLGGIIMAHFGDLVGRKKMFTLSILLMAAPTLAIG FT LLPTYASMGIVAPLLLLLMRILQGAAIGGEVPGAWVFVAEHVPEQRIGIACGTLTAGLT FT IGILLGSVVATQVNTHLSAQAVHDYGWRIPFLLGGVFGLVAMYLRRWLQETPVFLEMQQ FT RKALARELPVKSVVVRHQKAVAISMLLTWLLSAGIVVVILMSPVWLQKQYGLAPALTLQ FT ANSVATIMLCVGCLLAGFIVDRVGASKTFIVGSILLACSSWAFWHLAGVHPQYLFLLYG FT LVGLCVGVVGAVPYVLVRAFPAEVRFTGISFSYNVSYAIFGGLTPIAVTLLMNVSPMAP FT AWYVLALSLVGAGLGVWLRQDLYHRDSQMSAELQGQ" FT misc_feature join(9527..9595,9638..9706,9743..9811,9824..9892, FT 9917..9985,10028..10087,10190..10258,10301..10369, FT 10388..10456,10469..10537,10574..10642,10655..10717) FT /locus_tag="ROD_00081" FT /note="12 probable transmembrane helices predicted for FT ROD00081 by TMHMM2.0 at aa 21-43, 58-80, 93-115, 120-142, FT 151-173, 188-207, 242-264, 279-301, 308-330, 335-357, FT 370-392 and 397-417" FT misc_feature 9557..10645 FT /locus_tag="ROD_00081" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 1.7e-26" FT /inference="protein motif:PFAM:PF07690" FT misc_feature 10391..10423 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(10809..11375) FT /transl_table=11 FT /locus_tag="ROD_00091" FT /product="putative membrane protein" FT /db_xref="GOA:D2TGI9" FT /db_xref="InterPro:IPR000791" FT /db_xref="UniProtKB/TrEMBL:D2TGI9" FT /protein_id="CBG86788.1" FT /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNAGFFAFDGIILAMGIFY FT GGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKMGLTDAPNAQFLGVYLG FT LWGVFTLFMFFGTLKGARALQFVFLSLTVLFALLAVGNIAGNEAVIHVAGWIGLICGAS FT AIYLAMGEVLNEQFGRTVLPIGEAH" FT misc_feature complement(10812..11375) FT /locus_tag="ROD_00091" FT /note="HMMPfam hit to PF01184, GPR1/FUN34/yaaH, score FT 5e-122" FT /inference="protein motif:PFAM:PF01184" FT misc_feature complement(join(10866..10934,10944..11003,11022..11090, FT 11118..11186,11205..11264,11274..11342)) FT /locus_tag="ROD_00091" FT /note="6 probable transmembrane helices predicted for FT ROD00091 by TMHMM2.0 at aa 12-34, 38-57, 64-86, 96-118, FT 125-144 and 148-170" FT misc_feature complement(11325..11354) FT /note="PS01114 GPR1/FUN34/yaaH family signature." FT /inference="protein motif:Prosite:PS01114" FT CDS 11731..13647 FT /transl_table=11 FT /gene="dnaK" FT /locus_tag="ROD_00101" FT /product="chaperone protein DnaK (heat shock protein 70)" FT /db_xref="GOA:D2TGJ0" FT /db_xref="InterPro:IPR001023" FT /db_xref="InterPro:IPR012725" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="UniProtKB/TrEMBL:D2TGJ0" FT /protein_id="CBG86789.1" FT /translation="MGKIIGIDLGTTNSCVAIMDGTQARVLENAEGDRTTPSIIAYTQD FT GETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIGADNGDAWLD FT VKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGL FT EVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATN FT GDTHLGGEDFDSRMINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDV FT NLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDINDVILV FT GGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSL FT GIETMGGVMTALISKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFN FT LDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEEEIQKMVR FT EAEANAESDRKFEELVQTRNQGDHLLHSTRKQVEEAGDQLPADDKTAIESALSALETAL FT KGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQAGSADASANNAKDDDVVDAEFEEVK FT DKK" FT misc_feature 11740..13542 FT /gene="dnaK" FT /locus_tag="ROD_00101" FT /note="HMMPfam hit to PF00012, Heat shock protein 70, score FT 0" FT /inference="protein motif:PFAM:PF00012" FT misc_feature 11749..11772 FT /note="PS00297 Heat shock hsp70 proteins family signature FT 1." FT /inference="protein motif:Prosite:PS00297" FT misc_feature 12304..12345 FT /note="PS00329 Heat shock hsp70 proteins family signature FT 2." FT /inference="protein motif:Prosite:PS00329" FT misc_feature 12739..12783 FT /note="PS01036 Heat shock hsp70 proteins family signature FT 3." FT /inference="protein motif:Prosite:PS01036" FT CDS 13734..14864 FT /transl_table=11 FT /gene="dnaJ" FT /locus_tag="ROD_00111" FT /product="chaperone protein DnaJ (heat shock protein J)" FT /db_xref="GOA:D2TGJ1" FT /db_xref="InterPro:IPR001305" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR002939" FT /db_xref="InterPro:IPR003095" FT /db_xref="InterPro:IPR008971" FT /db_xref="InterPro:IPR012724" FT /db_xref="InterPro:IPR018253" FT /db_xref="UniProtKB/TrEMBL:D2TGJ1" FT /protein_id="CBG86790.1" FT /translation="MAKKDYYEILGVSRSAEEREIKKAYKRLAMKYHPDRNQGDKEAEG FT KFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGG FT GRGRQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPT FT CHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVEKSKTLSVKIPAGVDT FT GDRIRLSGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIE FT VPTLDGRVKLKVPGETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLNEKQKQL FT LQDLQESFGGPTGEKNSPRSKNFFEGVKKFFDDLTR" FT misc_feature 13746..13934 FT /gene="dnaJ" FT /locus_tag="ROD_00111" FT /note="HMMPfam hit to PF00226, Heat shock protein DnaJ, FT N-terminal, score 2.3e-40" FT /inference="protein motif:PFAM:PF00226" FT misc_feature 13872..13931 FT /note="PS00636 Nt-dnaJ domain signature." FT /inference="protein motif:Prosite:PS00636" FT misc_feature 14124..14366 FT /gene="dnaJ" FT /locus_tag="ROD_00111" FT /note="HMMPfam hit to PF00684, DnaJ central region, score FT 4e-50" FT /inference="protein motif:PFAM:PF00684" FT misc_feature 14163..14237 FT /note="PS00637 CXXCXGXG dnaJ domain signature." FT /inference="protein motif:Prosite:PS00637" FT misc_feature 14163..14180 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT /inference="protein motif:Prosite:PS00190" FT misc_feature 14322..14339 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT /inference="protein motif:Prosite:PS00190" FT misc_feature 14403..14768 FT /gene="dnaJ" FT /locus_tag="ROD_00111" FT /note="HMMPfam hit to PF01556, Chaperone DnaJ, C-terminal, FT score 2.4e-75" FT /inference="protein motif:PFAM:PF01556" FT CDS 15180..16112 FT /transl_table=11 FT /locus_tag="ROD_00121" FT /product="putative LysR-family transcriptional regulator" FT /db_xref="GOA:D2TGJ2" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TGJ2" FT /protein_id="CBG86791.1" FT /translation="MKKEFDYNLIKVLDAVISAGNVTKASKRLAVTPAAVSIALTRLQG FT FYNEALFVRGRSGLIPTMKALEIHERFCQAIDLIKLTLTPQKQSAERNKITILGGDITE FT NYYLSQLYDDKLFERFTFRHFSNRNRDGEEMKRLLIMEECDIAISPTLVNDNDFECKPI FT DNFKHFCVICGKDNLLSELSQLSLHNFFSAHHAVFKANDYTAVTIKDNNLYNNNADYKE FT RRIVGYKSDSLTGLISIVERTQLVALMPLKVATFFKNQRKYNINILQPPREMLIKPINV FT YAYWHKRNTKYPHIEEIVTMLHTLSAFRH" FT misc_feature 15198..15377 FT /locus_tag="ROD_00121" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 1.2e-11" FT /inference="protein motif:PFAM:PF00126" FT misc_feature 15237..15302 FT /note="Predicted helix-turn-helix motif with score FT 1048.000, SD 2.76 at aa 20-41, sequence FT GNVTKASKRLAVTPAAVSIALT" FT CDS 16228..16578 FT /transl_table=11 FT /locus_tag="ROD_00122" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TGJ3" FT /protein_id="CBG86792.1" FT /translation="MLLPGQLETPKAILLEIEIVAIVIATGAWGGIVSYLLKSEKFKAS FT DFHKRLMGCITQVIISCFTSFLLSVVAVEKGYSFNMILLFAGIGGVFAVPILKILGARV FT KRMMNGNDELVK" FT CDS complement(16662..17195) FT /transl_table=11 FT /locus_tag="ROD_00131" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR008565" FT /db_xref="InterPro:IPR018537" FT /db_xref="UniProtKB/TrEMBL:D2TGJ4" FT /protein_id="CBG86793.1" FT /translation="MNPVIDGILALEGGYTNNPHDRGGETHWGITEATARANGYNGEMK FT ALTRDEAYAILENAYWIKPGFENVSHLSWPISFELCDAAVNIGPRFPCIWLQRWLNVFN FT KEQKLYHDIKVDGRIGAMTLQALESFLQARGAEGEKVLLKALNCSQGAYYLNITEERVQ FT NEQFVYGWLNNRVA" FT misc_feature complement(16668..17189) FT /locus_tag="ROD_00131" FT /note="HMMPfam hit to PF05838, Protein of unknown function FT DUF847, score 1.6e-88" FT /inference="protein motif:PFAM:PF05838" FT CDS complement(17229..17642) FT /transl_table=11 FT /locus_tag="ROD_00141" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TGJ5" FT /db_xref="InterPro:IPR001867" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR016032" FT /db_xref="UniProtKB/TrEMBL:D2TGJ5" FT /protein_id="CBG86794.1" FT /translation="MKTYIINRDCIFNERKYELRNITNSLVIRMTAMRARCLSFIIEHA FT QDEVIERQELTTALWGSRGNFVNDANLTQILYLIRKDLKSFGINDLLITIPRKGIQVND FT SIPIESTDNDMPRPPAPSLFRQIKQSITSLFQR" FT CDS 18027..20102 FT /transl_table=11 FT /locus_tag="ROD_00151" FT /product="putative polysaccharide degrading enzyme" FT /db_xref="GOA:D2TGJ6" FT /db_xref="InterPro:IPR001223" FT /db_xref="InterPro:IPR003610" FT /db_xref="InterPro:IPR011583" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/TrEMBL:D2TGJ6" FT /protein_id="CBG86795.1" FT /translation="MATSKLIKGDTLTETSNAADGFNPATEVSKYSYTSARVANPVYNV FT YKADAKKPKVFGYYTDWSQYDSRLQGGDNPADRGRGYDLANVDPLAYDKIIFGFLGIVG FT DKGEKQATIERAAAQTGKTTNEPTFLDPWGDFQSYVNCNQETSGWDVEPMTVTQQNTHG FT LLGGLRDLQQKAKQLGHTLALSMSIGGWTMSNGFHEMAKTEAARKTFAAGVVKLFKQFP FT MFSEVDIDWEYPNAVGNNNPYGPEDGANYALVIKELKKQLDAAGRSDVKISIASSAVIE FT TLGHSNVKALLDAGLYGINVMTYDFFGTPWAETLTHHTNLSPLSAGGWSIEAVIDYLIA FT EGFPADRINIGYAGYTRNARNVEIESFSPLKGTYNPGEGTTTGSFESGCTEWYDTIYNY FT LDLENQKGRNGFNVYTDKVANADYLYNPQSRLFMSLDTPRSVKAKGEYAAKLGLGGLFT FT WTIDQDNGVLVNAAREGLGYEISKEVVDMDPFYFEGINIEPADQDEDEGEKVNHAPKAA FT IALRVVGGSRVQLSGEESSDEDKDALTFSWGVPTAIDVADKTTAVIEFAVPVVEAATDF FT QFTLFVRDAQGEPSTQQRFVLTVVPAGTVEPTPADDKEDDVTPTPVPSDDTDELPDDSA FT SSYPQWDADTIYGANWGEFEIVSWKGHNYQVNWWCQGLQPDLNCGPAQAWTDLGAY" FT misc_feature 18183..19418 FT /locus_tag="ROD_00151" FT /note="HMMPfam hit to PF00704, Glycoside hydrolase, family FT 18, catalytic domain, score 1.1e-76" FT /inference="protein motif:PFAM:PF00704" FT misc_feature 18372..18395 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 19938..20081 FT /locus_tag="ROD_00151" FT /note="HMMPfam hit to PF02839, Carbohydrate-binding family FT V/XII, score 1.8e-06" FT /inference="protein motif:PFAM:PF02839" FT CDS 20703..21869 FT /transl_table=11 FT /gene="nhaA" FT /locus_tag="ROD_00161" FT /product="Na(+)/H(+) antiporter 1" FT /db_xref="GOA:D2TGJ7" FT /db_xref="InterPro:IPR004670" FT /db_xref="InterPro:IPR023171" FT /db_xref="UniProtKB/TrEMBL:D2TGJ7" FT /protein_id="CBG86796.1" FT /translation="MKHLHRFFSSDASGGIILIIAAALAMLMANVGLTSGWYHAFLDTP FT VQLKVGALEINKNMLLWINDALMAIFFLLIGLEVKRELMQGSLASLRQAAFPVIAAIGG FT MIVPAVLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIID FT DLGAIVIIALFYTSDLSMVSLGVAACAIAVLALLNVCGVRRTGVYILVGAVLWTAVLKS FT GVHATLAGVIVGFFIPLREKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTI FT DGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKMAQLPAGTTFPQIMAVGILCGIGFT FT MSIFIASLAFGGVDAELINWAKLGILIGSLLSAVIGYSWLRARLSPAV" FT sig_peptide 20703..20789 FT /gene="nhaA" FT /locus_tag="ROD_00161" FT /note="Signal peptide predicted for ROD00161 by SignalP 2.0 FT HMM (Signal peptide probability 0.975) with cleavage site FT probability 0.565 between residues 29 and 30" FT misc_feature 20712..21842 FT /gene="nhaA" FT /locus_tag="ROD_00161" FT /note="HMMPfam hit to PF06965, Na+/H+ antiporter NhaA, FT score 2.2e-253" FT /inference="protein motif:PFAM:PF06965" FT misc_feature join(20736..20804,20877..20930,20988..21047,21075..21143, FT 21162..21230,21240..21308,21345..21413,21471..21539, FT 21573..21641,21684..21752,21771..21839) FT /gene="nhaA" FT /locus_tag="ROD_00161" FT /note="11 probable transmembrane helices predicted for FT ROD00161 by TMHMM2.0 at aa 12-34, 59-76, 96-115, 125-147, FT 154-176, 180-202, 215-237, 257-279, 291-313, 328-350 and FT 357-379" FT misc_feature 21216..21308 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature 21237..21269 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 21929..22825 FT /transl_table=11 FT /gene="nhaR" FT /locus_tag="ROD_00171" FT /product="transcriptional regulator" FT /db_xref="GOA:D2TGH8" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TGH8" FT /protein_id="CBG86797.1" FT /translation="MSHINYNHLYYFWNVYKEGSVVGAAEALYLTPQTITGQIKALEER FT LQGKLFKRKGRGLEPSELGELVFRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADALS FT KRLVSSVLDAAVVEDEQIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSV FT KIGECGVSFWCTHPQPEKPFPACLEERRLLVPGRRSMLGRKLLNWFNSQGLNVEILGEF FT DDAALMKAFGATHNAIFVAPTLYANDFYADDSIVEIGRVENVMEEYHAIFAERMIQHPA FT VQRICNSDYSRLFGKPD" FT misc_feature 21944..22123 FT /gene="nhaR" FT /locus_tag="ROD_00171" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 2.9e-17" FT /inference="protein motif:PFAM:PF00126" FT misc_feature 21986..22078 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature 22190..22810 FT /gene="nhaR" FT /locus_tag="ROD_00171" FT /note="HMMPfam hit to PF03466, LysR, substrate-binding, FT score 3.7e-05" FT /inference="protein motif:PFAM:PF03466" FT CDS complement(22860..24899) FT /transl_table=11 FT /locus_tag="ROD_00181" FT /product="putative glycosyl hydrolase" FT /db_xref="GOA:D2TGH9" FT /db_xref="InterPro:IPR000322" FT /db_xref="InterPro:IPR011013" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/TrEMBL:D2TGH9" FT /protein_id="CBG86798.1" FT /translation="MSFIKHDPQRLVWQHNDRYLWIEAWGENSLRVRSGRHMPVMRNEN FT WALTETPVASAAQVTYEEKRATLQNGKITAVVNQQGQVSFYRHPDKCLLQEFWRLRGEI FT GEDESSHGQYVSALNLEEREFRPIPGGKYTIKARFEANEGEKLYGMGQYQQPNLDLKGC FT MLELAQRNSQASVPFLLSSHGYGFLWNNPAIGRVIFANNGTEWEAAVSEQLDYWITAGD FT TPAEISEAYARATGTPPMMPDYAMGFWQCKLRYRNQQELLEVAREYKRRNLPLSVIVID FT FFHWPNQGDWTFDPCDWPDPDAMIAELKAMGTELMVSFWPTVDNRTESYREMKEHGWLV FT HTERGLPINMDFLGNTTFFDATHPEARNYVWGKAKRNYYDKGVKLFWLDEAEPEFSVYD FT YDNYRYHTGPVLETGNIYPRMYARTFFDGMRAAGEQQIINLLRCAWAGSQKYGALVWSG FT DIHSSFRSLRNQFAAGLNMGIAGIPWWTTDIGGFHGGNIHDPAFHELLIRWFQWGIFSP FT VMRLHGNRDPQILPEQPYREGIAQCPTGAPNEIWSYGEEVCEVLTGCLQLRESLKPYIK FT QIMQETHEKNTPVMRTLFFEFPHQPESWEIDDQYCFGPDLLVAPVMYAGARERTVWLPD FT GDTWIDLCTRERYQGGQTRLHAAPLNRIPVFIREKGKYRHLLPV" FT misc_feature complement(22881..24254) FT /locus_tag="ROD_00181" FT /note="HMMPfam hit to PF01055, Glycoside hydrolase, family FT 31, score 5.7e-168" FT /inference="protein motif:PFAM:PF01055" FT CDS complement(24938..26311) FT /transl_table=11 FT /locus_tag="ROD_00191" FT /product="putative transport protein" FT /db_xref="GOA:D2TGI3" FT /db_xref="InterPro:IPR001927" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="UniProtKB/TrEMBL:D2TGI3" FT /protein_id="CBG86799.1" FT /translation="MSSVIEEAHLTEHQRLSSLQRISYGLLDVAGNLLYCFGSTYILYF FT YTDVAGITLAIAGTILLLARIVDGIDAPVWGIIIDKTRSRYGKCRPWFLWLPLPFAVFS FT ALSFWSPDISMTGKTLYAAISYMIASILFTGLNTPLSAILPLMTLSAKERLILNSYRMT FT GGQIGVLLMNATALPLVAFLGGGNDKSGFFYTAIVFAIISCALTLFAFRNIRELDTDKI FT QQQPQLPMKKSFRAMKGNWPWILMVLANLIFWVALQQRASTIVYYLTYNLDRKDLVPLV FT NSLATIQILFIIAIPFFSRYLSKTGIWIAGLLLSTAGGILVWLAAGNVTLLIVAWVLAN FT IGSGIACSMPFAMLGFAVDYGAWKTGVKATSILIAFGSTFCIKMGSGIGTAFAAWIMNS FT FGYLPNQAQTAAGLEGITWAFIWTPALLFALAALPLLFFRQYEAMERRIQQDLQSGAH" FT misc_feature complement(join(24998..25066,25124..25192,25250..25318, FT 25331..25396,25415..25483,25541..25594,25673..25741, FT 25754..25813,25874..25942,25985..26038,26120..26188)) FT /locus_tag="ROD_00191" FT /note="11 probable transmembrane helices predicted for FT ROD00191 by TMHMM2.0 at aa 42-64, 92-109, 124-146, 167-186, FT 191-213, 240-257, 277-299, 306-327, 332-354, 374-396 and FT 416-438" FT misc_feature complement(25118..26230) FT /locus_tag="ROD_00191" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 1.8e-05" FT /inference="protein motif:PFAM:PF07690" FT misc_feature complement(25271..25303) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(25700..25732) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 26543..26671 FT /transl_table=11 FT /locus_tag="ROD_00201" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TGI5" FT /protein_id="CBG86800.1" FT /translation="MQVTFLRTMKGKFFQNKTKLFSGTPRSAEEGAGSRKKKAAEV" FT CDS complement(26742..27005) FT /transl_table=11 FT /locus_tag="ROD_00212" FT /product="30S ribosomal protein S20" FT /db_xref="GOA:D2TGI6" FT /db_xref="InterPro:IPR002583" FT /db_xref="UniProtKB/TrEMBL:D2TGI6" FT /protein_id="CBG86801.1" FT /translation="MANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKA FT AAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA" FT misc_feature complement(26751..27002) FT /locus_tag="ROD_00212" FT /note="HMMPfam hit to PF01649, Ribosomal protein S20, score FT 9.9e-46" FT /inference="protein motif:PFAM:PF01649" FT CDS 27111..27326 FT /transl_table=11 FT /locus_tag="ROD_00213" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR020105" FT /db_xref="UniProtKB/TrEMBL:D2TGJ8" FT /protein_id="CBG86802.1" FT /translation="MRRSLRSDGAGFYQLAGREYSFSARKIELRCLLTACICLIAMKSI FT LFLFRGINRRLTLTAVQGILWRFSLF" FT misc_feature 27189..27257 FT /locus_tag="ROD_00213" FT /note="1 probable transmembrane helix predicted for FT ROD00213 by TMHMM2.0 at aa 27-49" FT CDS 27334..28272 FT /transl_table=11 FT /gene="ribF" FT /locus_tag="ROD_00221" FT /product="riboflavin biosynthesis protein" FT /EC_number="2.7.1.26" FT /EC_number="2.7.7.2" FT /db_xref="GOA:D2TGJ9" FT /db_xref="InterPro:IPR002606" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR015864" FT /db_xref="InterPro:IPR015865" FT /db_xref="InterPro:IPR023465" FT /db_xref="InterPro:IPR023468" FT /db_xref="UniProtKB/TrEMBL:D2TGJ9" FT /protein_id="CBG86803.1" FT /translation="MKLIRGIHNLSQAPHGCVLTIGNFDGVHRGHRALLQSLQEEGRRR FT GLPVMVMIFEPQPLELFATDKAPARLTRLREKLRYLAQCGVDYVLCVRFDRRFAALTAQ FT TFISDLLVDRLGVRFLAVGDDFRFGAGRTGDFLLLQKAGAEYGFAVTNTQTFCEGGVRI FT SSTAVRQALAEDNLALAESLLGHPFTISGRVVHGDELGRTIGFPTANIPLRRQVSPVKG FT VYAVEVMGAGEQPMPGVANIGTRPTVAGVRQQLEVHVLDVVMDLYGRHIDVVLRKKIRN FT EQRFASLDELKAQIARDELTARDFFGLSKPA" FT misc_feature 27376..27834 FT /gene="ribF" FT /locus_tag="ROD_00221" FT /note="HMMPfam hit to PF06574, FAD synthetase, score FT 4.2e-87" FT /inference="protein motif:PFAM:PF06574" FT misc_feature 27880..28254 FT /gene="ribF" FT /locus_tag="ROD_00221" FT /note="HMMPfam hit to PF01687, Riboflavin kinase, score FT 2e-63" FT /inference="protein motif:PFAM:PF01687" FT CDS 28310..31126 FT /transl_table=11 FT /gene="ileS" FT /locus_tag="ROD_00231" FT /product="isoleucyl-tRNA synthetase" FT /EC_number="6.1.1.5" FT /db_xref="GOA:D2TGK1" FT /db_xref="InterPro:IPR001412" FT /db_xref="InterPro:IPR002300" FT /db_xref="InterPro:IPR002301" FT /db_xref="InterPro:IPR009008" FT /db_xref="InterPro:IPR009080" FT /db_xref="InterPro:IPR010663" FT /db_xref="InterPro:IPR013155" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR023585" FT /db_xref="UniProtKB/TrEMBL:D2TGK1" FT /protein_id="CBG86804.1" FT /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAK FT KGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGFDSPYVPGWDCHGLPIEL FT KVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKTEA FT NIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFRAVDQNAV FT QAKFGLPGVSGPISLVIWTTTPWTLPANRAISLAPDFDYALVQIDGQALILAKDLVESV FT MQRIGVADYSILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHTAGGHGP FT DDYTISLKYGLEIANPVGPDGAYLAGTYPGLDGVNVFKANDTIVELLREKGALLHVEKM FT QHSYPCCWRHKSPIIFRATPQWFISMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVAN FT RPDWCISRQRTWGVPMALFVHKDTEELHPRAVELMEEVAKRVEVDGIQAWWDLDPKAIL FT GDEADQYVKVPDTLDVWFDSGSTHASVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMI FT STAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYT FT GEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPVKDMVKPEEMVVLDRWAVGCAKA FT AQEDILKAYEDYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKADSVARRSCQSALY FT HIAEALVRWMAPIMSFTADEIWGYLPGEREKYVFTGEWYEGLFGLGETEPMNDAFWDEL FT LKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALGDELRFVLLTSGAKVA FT DYAEASADAQQSELLKGLKVALSKAEGEKCPRCWHYTTDVGKVAEHAEICGRCVSNVAG FT DGEKRKFA" FT misc_feature 28388..30232 FT /gene="ileS" FT /locus_tag="ROD_00231" FT /note="HMMPfam hit to PF00133, Aminoacyl-tRNA synthetase, FT class Ia, score 0" FT /inference="protein motif:PFAM:PF00133" FT misc_feature 28481..28516 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT /inference="protein motif:Prosite:PS00178" FT misc_feature 30362..30838 FT /gene="ileS" FT /locus_tag="ROD_00231" FT /note="HMMPfam hit to PF08264, Valyl/Leucyl/Isoleucyl-tRNA FT synthetase, class I, anticodon-binding, score 8.5e-58" FT /inference="protein motif:PFAM:PF08264" FT misc_feature 31001..31090 FT /gene="ileS" FT /locus_tag="ROD_00231" FT /note="HMMPfam hit to PF06827, Formamidopyrimidine-DNA FT glycolase, C-terminal, score 2.5e-14" FT /inference="protein motif:PFAM:PF06827" FT CDS 31126..31623 FT /transl_table=11 FT /gene="lspA" FT /locus_tag="ROD_00241" FT /product="lipoprotein signal peptidase" FT /EC_number="3.4.23.36" FT /db_xref="GOA:D2TGK3" FT /db_xref="InterPro:IPR001872" FT /db_xref="UniProtKB/TrEMBL:D2TGK3" FT /protein_id="CBG86805.1" FT /translation="MSKSLSSTGLRWLWLVVVVLIIDLGSKFLILQNFALGDTVPLFPS FT LNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGICVILTVLMYRAKATQKLNNIAYALI FT IGGALGNLFDRLWHGFVVDMIDFYVGEWHFATFNLADSAICIGAALIVLEGFIPSKQKT FT TA" FT misc_feature 31153..31617 FT /gene="lspA" FT /locus_tag="ROD_00241" FT /note="HMMPfam hit to PF01252, Peptidase A8, signal FT peptidase II, score 3.6e-84" FT /inference="protein motif:PFAM:PF01252" FT misc_feature join(31162..31230,31321..31389,31423..31491,31534..31602) FT /gene="lspA" FT /locus_tag="ROD_00241" FT /note="4 probable transmembrane helices predicted for FT ROD00241 by TMHMM2.0 at aa 13-35, 66-88, 100-122 and FT 137-159" FT misc_feature 31441..31473 FT /note="PS00855 Signal peptidases II signature." FT /inference="protein motif:Prosite:PS00855" FT CDS 32133..32582 FT /transl_table=11 FT /gene="fkpB" FT /locus_tag="ROD_00251" FT /product="FkbB-type 16 kD peptidyl-prolyl cis-trans FT isomerase" FT /db_xref="GOA:D2TGK4" FT /db_xref="InterPro:IPR001179" FT /db_xref="InterPro:IPR023566" FT /db_xref="UniProtKB/TrEMBL:D2TGK4" FT /protein_id="CBG86806.1" FT /translation="MSKSVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLS FT EGLEQHLLGLKDGDKATFSLEPDAAFGVPTPDLIQYFSRREFMDAGEPEIGAIMLFTAM FT DGSEMPGVIREINGDSITVDFNHPLAGHTVHFDIDVLEVDPALEG" FT misc_feature 32145..32555 FT /gene="fkpB" FT /locus_tag="ROD_00251" FT /note="HMMPfam hit to PF00254, Peptidyl-prolyl cis-trans FT isomerase, FKBP-type, score 6.8e-13" FT /inference="protein motif:PFAM:PF00254" FT misc_feature 32169..32216 FT /note="PS00453 FKBP-type peptidyl-prolyl cis-trans FT isomerase signature 1." FT /inference="protein motif:Prosite:PS00453" FT misc_feature 32262..32348 FT /note="PS00454 FKBP-type peptidyl-prolyl cis-trans FT isomerase signature 2." FT /inference="protein motif:Prosite:PS00454" FT CDS 32584..33534 FT /transl_table=11 FT /gene="ispH" FT /gene_synonym="lytB" FT /locus_tag="ROD_00261" FT /product="4-hydroxy-3-methylbut-2-enyl diphosphate FT reductase" FT /EC_number="1.17.1.2" FT /db_xref="GOA:D2TGK7" FT /db_xref="InterPro:IPR003451" FT /db_xref="UniProtKB/TrEMBL:D2TGK7" FT /protein_id="CBG86807.1" FT /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRYV FT VDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHM FT EVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPEDVWTLNVKNEGKLSF FT MTQTTLSVDDTSDVIDALRQRFPKIVGPRKDDICYATTNRQEAVRRLAEQADVVLVVGS FT KNSSNSNRLAELAQRMGKTAFLIDDATDIQEAWVKEAKCVGVTAGASAPDILVQNVITR FT LQALGGGEAIPLEGREENIVFEVPKELRMDVREIG" FT misc_feature 32590..33438 FT /gene="ispH" FT /gene_synonym="lytB" FT /locus_tag="ROD_00261" FT /note="HMMPfam hit to PF02401, LytB protein, score FT 8.3e-189" FT /inference="protein motif:PFAM:PF02401" FT CDS 33775..34557 FT /transl_table=11 FT /locus_tag="ROD_00271" FT /product="hypothetical protein" FT /db_xref="GOA:D2TGK8" FT /db_xref="InterPro:IPR010551" FT /db_xref="InterPro:IPR011051" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:D2TGK8" FT /protein_id="CBG86808.1" FT /translation="MADALHSFGLDMAVHHHPPGFSYGDEVTGPMPEIRRLDQIRASLR FT DPHCSGPQEVYAIAMDVARMQDRDELRKRMLLFGVVTYAAGRLGEEPVRSQGHVHRISQ FT HSGWSPPELYEIWQGKAIVYMQEHVGDDPGRCFAVIAGPGEKVLVPPGWGHATISADPD FT APLTFGAWCDREYGFEYEAIRARKGLAWYPLLQDKNVVWQHNPRYLPGRLQVVTPRQYT FT EFAITSAPVYQQFIDDPARFQFISRPDKVAELWAHFHP" FT CDS complement(34609..35427) FT /transl_table=11 FT /locus_tag="ROD_00281" FT /product="putative PTS system protein" FT /db_xref="GOA:D2TGK9" FT /db_xref="InterPro:IPR004704" FT /db_xref="UniProtKB/TrEMBL:D2TGK9" FT /protein_id="CBG86809.1" FT /translation="MEQRTLTRKDLRRCWRAWMMHNLSSMSFERLASFGFCLSMLPVAK FT KLYPDAAQRHEMLRRHASFYNTEPQIGAIVNGMALGLEEKKANGEPIDGETINTLKVGL FT MGPIAGIGDSMIPGMLIPILLSIGMALAAGGNILGPLFYTVAWLAIIIPGSWFLFLKGY FT KMGSGSVEMLVSSKSARLREALSLLGVFVMGGVAASYVKLGTGLEFITKDGVNIHVQQM FT LDGIFPQLLPLAVVLGTWYLMAKRGVSPVKAMVLLLVLAALGVATGLFAG" FT misc_feature complement(join(34615..34683,34696..34764,34807..34875, FT 34951..35019,35032..35100)) FT /locus_tag="ROD_00281" FT /note="5 probable transmembrane helices predicted for FT ROD00281 by TMHMM2.0 at aa 110-132, 137-159, 185-207, FT 222-244 and 249-271" FT misc_feature complement(34618..35418) FT /locus_tag="ROD_00281" FT /note="HMMPfam hit to PF03613, Phosphotransferase system, FT mannose/fructose/sorbose family IID component, score FT 3.6e-95" FT /inference="protein motif:PFAM:PF03613" FT misc_feature complement(35326..35355) FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT /inference="protein motif:Prosite:PS00339" FT CDS complement(35427..36230) FT /transl_table=11 FT /locus_tag="ROD_00291" FT /product="putative PTS system protein" FT /db_xref="GOA:D2TGL0" FT /db_xref="InterPro:IPR004700" FT /db_xref="UniProtKB/TrEMBL:D2TGL0" FT /protein_id="CBG86810.1" FT /translation="MIFEATLIGILCYLGALSSPWLFGLTGGWYLITRPLISGMLVGLI FT LGDMQTGIVIGVAVQAVYIAMVTPGGSMPADLNFVAYPAIALGILSGKGPEVAVALAAT FT IGIAGTILFNAMMVLNSFWNHRADVALERGDERGLYLNSAIWPQVSNFILRFVPTFIAV FT YFGAQYISGFMDSLPGIVLSTMNVLGGILPAVGIAILLKQIIKNYSMLIYFLVGFVCIV FT FLKLNMVALVIVGSLLALIHYNYKPEAPQAVNAASAAKDDDEDEF" FT misc_feature complement(35505..36227) FT /locus_tag="ROD_00291" FT /note="HMMPfam hit to PF03609, Phosphotransferase system, FT sorbose-specific IIC subunit, score 3.3e-16" FT /inference="protein motif:PFAM:PF03609" FT misc_feature complement(join(35526..35594,35628..35696,35709..35777, FT 35874..35942,36006..36074,36135..36203)) FT /locus_tag="ROD_00291" FT /note="6 probable transmembrane helices predicted for FT ROD00291 by TMHMM2.0 at aa 10-32, 53-75, 97-119, 152-174, FT 179-201 and 213-235" FT CDS complement(36241..36735) FT /transl_table=11 FT /locus_tag="ROD_00301" FT /product="putative PTS system protein" FT /db_xref="GOA:D2TGL1" FT /db_xref="InterPro:IPR004720" FT /db_xref="UniProtKB/TrEMBL:D2TGL1" FT /protein_id="CBG86811.1" FT /translation="MSISFVRIDDRVIHGQLVTRWARELPCDGIIAIDDAVAADPLLSS FT VMKGAVQDTKVWLFDTATAIEKLPKVIASEKRYFVIAKSPVTLKGIEEAGISLQNGNGK FT INVGPMSARADTVTIGPNQSVNADEIAAFDWLTQCGHLVEFRLVPDASFYSWQDARQKM FT K" FT misc_feature complement(36274..36732) FT /locus_tag="ROD_00301" FT /note="HMMPfam hit to PF03830, Phosphotransferase system, FT sorbose subfamily IIB component, score 1.1e-15" FT /inference="protein motif:PFAM:PF03830" FT CDS complement(36747..37175) FT /transl_table=11 FT /locus_tag="ROD_00311" FT /product="putative PTS system protein" FT /db_xref="GOA:D2TGL2" FT /db_xref="InterPro:IPR004701" FT /db_xref="UniProtKB/TrEMBL:D2TGL2" FT /protein_id="CBG86812.1" FT /translation="MINIIVATHGPLAEALLASARMVYGDLPHVYTATLSEQSGIEGFK FT ESFAKTLAEAGQNADGVLVLCDMQSGTPWNVACQYAFSPDTQPPVAVVAGVNFPMLLQS FT EEINPLTDVHAAADELLALTVPTLVKAAPVVTTQSEDF" FT misc_feature complement(36801..37172) FT /locus_tag="ROD_00311" FT /note="HMMPfam hit to PF03610, Phosphotransferase system, FT fructose subfamily IIA component, score 2.3e-17" FT /inference="protein motif:PFAM:PF03610" FT CDS complement(37180..38925) FT /transl_table=11 FT /locus_tag="ROD_00321" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR011051" FT /db_xref="InterPro:IPR014710" FT /db_xref="InterPro:IPR016847" FT /db_xref="UniProtKB/TrEMBL:D2TGL3" FT /protein_id="CBG86813.1" FT /translation="MPTTYNKYPDVVVQGYDHQAWQGWNTILSALNTKLSDSTKTVLVV FT DCYPGVRTDELEQQLLANLDVALAVNIDSARLEKEALDYLLARNLTDDRIFGVLSCHQL FT VEFFDPDRLEQIRQQIASVKKGVVVVYGPGAALAHSGDVLVYADLPRWEIQQRMRHDGL FT ANWGAENADEDILRRYKRAYFIEWRVFDRHKTPLLKRADFLLDTTIENAPAMVSGDALR FT AGLQQTTTQPFRVVPFFDPGIWGGQWMKQQFDLDPAAPNYAWCFDCVPEENSLLLRFGA FT VRIELPSQDLVLLYPHPLLGEKVHARFGTDFPIRFDFLDTIDGQNLSFQVHPLTEYIQQ FT QFGMHYTQDESYYILDAQPEAKVYLGTRTGIEPQEMLEDLRAAQRGEKAFDDARFVNQI FT PARKHDHFLIPAGTVHCSGAGTMVLEISATPYIFTFKLWDWGRLGLDGLPRPVHLEHGE FT QVIDWQRDTQWVYDNLVNRIEPVAEGEGWKEERTGLHEREFIETRRHWFTAPVIHHTQG FT GVNVLNLVEGAEAIVDSPSGAFAPFTVHYAETFIIPAAVGEYRISPSGKGVGQKLATIK FT AWVRG" FT CDS 39111..40118 FT /transl_table=11 FT /locus_tag="ROD_00331" FT /product="putative LacI-family transcriptional regulator" FT /db_xref="GOA:D2TGL4" FT /db_xref="InterPro:IPR000843" FT /db_xref="InterPro:IPR001761" FT /db_xref="InterPro:IPR010982" FT /db_xref="UniProtKB/TrEMBL:D2TGL4" FT /protein_id="CBG86814.1" FT /translation="MTTVTLAQVAKRAGVSTATVSMVLRNRGRISQATRERVLQALDAS FT GYVYNQTAANLRNRSSNQVGLLLHDITNPFYGEMTAGLSDEMERHDLLLFLANSEESGE FT RQQKFVDSLMRNNACGMVLCAARETPVSFFDALKRRNIPAIMVVRTVNDPDFDYVGTDN FT FLGTQMATTHLLRLGHKNIAFIGGSPGSGTRAQRIGGFTSTLLEWGISPDPDWIVAAGA FT SQPDGAKAAESILGRYPQITAAVCYQDIVALGVMQALRKMGREPGRDFALVGFDDITEA FT ALVQPALTTVSVAAKEIGRKAGELLYSRIQGNDEPPKRIILPPALVIRESCGFH" FT misc_feature 39120..39197 FT /locus_tag="ROD_00331" FT /note="HMMPfam hit to PF00356, Bacterial regulatory FT protein, LacI, score 5e-09" FT /inference="protein motif:PFAM:PF00356" FT misc_feature 39120..39185 FT /note="Predicted helix-turn-helix motif with score FT 2025.000, SD 6.08 at aa 4-25, sequence FT VTLAQVAKRAGVSTATVSMVLR" FT misc_feature 39291..40100 FT /locus_tag="ROD_00331" FT /note="HMMPfam hit to PF00532, Periplasmic binding FT protein/LacI transcriptional regulator, score 2.5e-29" FT /inference="protein motif:PFAM:PF00532" FT CDS 40252..41073 FT /transl_table=11 FT /gene="dapB" FT /locus_tag="ROD_00341" FT /product="dihydrodipicolinate reductase" FT /EC_number="1.3.1.26" FT /db_xref="GOA:D2TGL8" FT /db_xref="InterPro:IPR000846" FT /db_xref="InterPro:IPR011770" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR022663" FT /db_xref="InterPro:IPR022664" FT /db_xref="InterPro:IPR023940" FT /db_xref="UniProtKB/TrEMBL:D2TGL8" FT /protein_id="CBG86815.1" FT /translation="MHDAQVRVAIAGAGGRMGRQLIQAVLQMEGVALGAALEREGSSLL FT GSDAGELAGAGKTGVTVQSSLEAVKDDFDVFIDFTRPEGTLNHLAFCREHGKAMVIGTT FT GFDEAGKQAIRDASRQIGIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHK FT VDAPSGTALAMGEAIAHALDKDLKACAVYSREGYTGERVPGTIGFATVRAGDIVGEHTA FT MFADIGERVEITHKASSRMTFANGAVRSALWLSAKQNGLFDMRDVLDLNNL" FT misc_feature 40267..40638 FT /gene="dapB" FT /locus_tag="ROD_00341" FT /note="HMMPfam hit to PF01113, Dihydrodipicolinate FT reductase, score 9.9e-68" FT /inference="protein motif:PFAM:PF01113" FT misc_feature 40645..41058 FT /gene="dapB" FT /locus_tag="ROD_00341" FT /note="HMMPfam hit to PF05173, Dihydrodipicolinate FT reductase, score 3.5e-80" FT /inference="protein motif:PFAM:PF05173" FT misc_feature 40711..40764 FT /note="PS01298 Dihydrodipicolinate reductase signature." FT /inference="protein motif:Prosite:PS01298" FT CDS 41527..42675 FT /transl_table=11 FT /gene="carA" FT /locus_tag="ROD_00351" FT /product="carbamoyl-phosphate synthase small chain" FT /EC_number="6.3.5.5" FT /db_xref="GOA:D2TGL9" FT /db_xref="InterPro:IPR002474" FT /db_xref="InterPro:IPR006274" FT /db_xref="InterPro:IPR017926" FT /db_xref="UniProtKB/TrEMBL:D2TGL9" FT /protein_id="CBG86816.1" FT /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTD FT PSYSRQIVTLTYPHIGNVGTNAADEESSRVHAQGLVIRDLPLIASNFRNTEDLSSYLKR FT HNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAQLALEKAKAFPGLNGMDLAKEVT FT TTETYSWTQGSWTLSGDLPEAKKEDDLPFHVVAYDFGAKRNILRMLVDRGCRLTVVPAK FT TSAEEVLKMNPDGIFLSNGPGDPAPCDYAIDAIQQFLNTDIPLFGICLGHQLLALASGA FT KTVKMKFGHHGGNHPVKDIDNNTVMITAQNHGFAVDEATLPANLRVTHKSLFDQTLQGI FT HRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRQSAK" FT misc_feature 41533..41979 FT /gene="carA" FT /locus_tag="ROD_00351" FT /note="HMMPfam hit to PF00988, Carbamoyl-phosphate FT synthase, small chain, score 1.5e-95" FT /inference="protein motif:PFAM:PF00988" FT misc_feature 42109..42645 FT /gene="carA" FT /locus_tag="ROD_00351" FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I, score 1.1e-75" FT /inference="protein motif:PFAM:PF00117" FT misc_feature 42316..42351 FT /note="PS00442 Glutamine amidotransferases class-I active FT site." FT /inference="protein motif:Prosite:PS00442" FT CDS 42694..45918 FT /transl_table=11 FT /gene="carB" FT /locus_tag="ROD_00361" FT /product="carbamoyl-phosphate synthase large chain" FT /EC_number="6.3.5.5" FT /db_xref="GOA:D2TGM0" FT /db_xref="InterPro:IPR005479" FT /db_xref="InterPro:IPR005480" FT /db_xref="InterPro:IPR005481" FT /db_xref="InterPro:IPR005483" FT /db_xref="InterPro:IPR006275" FT /db_xref="InterPro:IPR011607" FT /db_xref="InterPro:IPR011761" FT /db_xref="InterPro:IPR013815" FT /db_xref="InterPro:IPR013816" FT /db_xref="InterPro:IPR013817" FT /db_xref="InterPro:IPR016185" FT /db_xref="UniProtKB/TrEMBL:D2TGM0" FT /protein_id="CBG86817.1" FT /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVI FT LVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELER FT QGVLEEFGVTMIGATAYAIDKAEDRRRFDIAMKKIGLETARSGIAHTMEEALAVAADVG FT YPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVR FT DKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGG FT SNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDIT FT GGRTPASFEPSIDYVVTKIPRFNFEKFAGSNDRLTTQMKSVGEVMAIGRTQQESMQKAL FT RGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNI FT DRWFLVQIEELVRLEEKVAELGINGLTADFLRQLKRKGFADARLAKLAGVREAEIRKLR FT DQYDLHPVYKRVDTCAAEFATDTAYMYSTYEDECEANPSVDRDKIMVLGGGPNRIGQGI FT EFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKP FT KGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANAT FT VTTIEQAVEKAKEISYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLD FT RFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQ FT VQKLAFELQVRGLMNVQFAVKDNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMTG FT KSLAEQGVTKEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAK FT AQLGSNSTMKKQGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPR FT LVNKVHEGRPHIQDRIKNGEYTYIINTTAGRRAIEDSRVIRRSALQYKVHYDTTLNGGF FT ATAMALNADATEKVISVQEMHAQIKK" FT sig_peptide 42694..42762 FT /gene="carB" FT /locus_tag="ROD_00361" FT /note="Signal peptide predicted for ROD00361 by SignalP 2.0 FT HMM (Signal peptide probability 0.643) with cleavage site FT probability 0.569 between residues 23 and 24" FT misc_feature 42709..43071 FT /gene="carB" FT /locus_tag="ROD_00361" FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate FT synthetase large chain, N-terminal, score 4.3e-63" FT /inference="protein motif:PFAM:PF00289" FT misc_feature 42733..42765 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 43075..43785 FT /gene="carB" FT /locus_tag="ROD_00361" FT /note="HMMPfam hit to PF02786, Carbamoyl-phosphate synthase FT L chain, ATP-binding, score 1.9e-147" FT /inference="protein motif:PFAM:PF02786" FT misc_feature 43183..43227 FT /note="PS00866 Carbamoyl-phosphate synthase subdomain FT signature 1." FT /inference="protein motif:Prosite:PS00866" FT misc_feature 43582..43605 FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT /inference="protein motif:Prosite:PS00867" FT misc_feature 43963..44334 FT /gene="carB" FT /locus_tag="ROD_00361" FT /note="HMMPfam hit to PF02787, Carbamoyl-phosphate FT synthetase large chain, oligomerisation, score 3.2e-68" FT /inference="protein motif:PFAM:PF02787" FT misc_feature 44365..44709 FT /gene="carB" FT /locus_tag="ROD_00361" FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate FT synthetase large chain, N-terminal, score 2.9e-26" FT /inference="protein motif:PFAM:PF00289" FT misc_feature 44713..44964 FT /gene="carB" FT /locus_tag="ROD_00361" FT /note="HMMPfam hit to PF02786, Carbamoyl-phosphate synthase FT L chain, ATP-binding, score 2.1e-18" FT /inference="protein motif:PFAM:PF02786" FT misc_feature 44821..44865 FT /note="PS00866 Carbamoyl-phosphate synthase subdomain FT signature 1." FT /inference="protein motif:Prosite:PS00866" FT misc_feature 45049..45336 FT /gene="carB" FT /locus_tag="ROD_00361" FT /note="HMMPfam hit to PF02786, Carbamoyl-phosphate synthase FT L chain, ATP-binding, score 2.5e-14" FT /inference="protein motif:PFAM:PF02786" FT misc_feature 45208..45231 FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT /inference="protein motif:Prosite:PS00867" FT misc_feature 45289..45312 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 45559..45819 FT /gene="carB" FT /locus_tag="ROD_00361" FT /note="HMMPfam hit to PF02142, MGS-like, score 7.4e-31" FT /inference="protein motif:PFAM:PF02142" FT CDS 46165..46554 FT /transl_table=11 FT /gene="caiF" FT /locus_tag="ROD_00371" FT /product="transcriptional activator" FT /db_xref="GOA:D2TGM1" FT /db_xref="InterPro:IPR020357" FT /db_xref="UniProtKB/TrEMBL:D2TGM1" FT /protein_id="CBG86818.1" FT /translation="MCEERVDKPLYLLIADWVMAEKRWVSAKEIAKQFNMDHCKASNTV FT SYILAEVAEIHCETKTIPNQLEGRGCQCQRLVRVTHIAPQLYARLGQGAQQKMVNRTPQ FT MTAVPPSELNREQKWQMMLSKSLRR" FT CDS complement(46781..47566) FT /transl_table=11 FT /gene="caiD" FT /locus_tag="ROD_00381" FT /product="carnitinyl-CoA dehydratase" FT /EC_number="4.2.1.-" FT /db_xref="GOA:D2TGM2" FT /db_xref="InterPro:IPR001753" FT /db_xref="InterPro:IPR014748" FT /db_xref="InterPro:IPR018376" FT /db_xref="InterPro:IPR022852" FT /db_xref="UniProtKB/TrEMBL:D2TGM2" FT /protein_id="CBG86819.1" FT /translation="MSESLHLTRNGAVLEIILDRPKANAIDARTSFQMGEVFLNFRDDP FT ELRVAIVTGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTECFDLDKPVIAAVNGY FT AFGGGFELALAADFIVCADHASFALPEARLGIVPDSGGVLRLPKRLPPVIANEMVMTGR FT RMSAGEALRWGIVNRVVSQQALMDSARELAQQLVSSAPLAIAALKEIYRATGEMSVEEG FT YRCLRSGALKHYPAVLHSEDALEGPRAFAEKRDPVWKGR" FT misc_feature complement(47024..47527) FT /gene="caiD" FT /locus_tag="ROD_00381" FT /note="HMMPfam hit to PF00378, Crotonase, core, score FT 1.1e-78" FT /inference="protein motif:PFAM:PF00378" FT misc_feature complement(47213..47275) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT /inference="protein motif:Prosite:PS00166" FT misc_feature complement(47366..47452) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT CDS complement(47619..49172) FT /transl_table=11 FT /gene="caiC" FT /locus_tag="ROD_00391" FT /product="probable crotonobetaine/carnitine-CoA ligase" FT /EC_number="6.2.1.-" FT /db_xref="GOA:D2TGM3" FT /db_xref="InterPro:IPR000873" FT /db_xref="InterPro:IPR020845" FT /db_xref="InterPro:IPR023456" FT /db_xref="UniProtKB/TrEMBL:D2TGM3" FT /protein_id="CBG86820.1" FT /translation="MDIVGGQHLRQMWDDLAEKYGGKTALIYESCAGKAQQFSYASLNQ FT EINRTANLFYASGIRKGDKVALHLDNCPAFFFCWFGLAKIGAIMVPVNARLLRDESEWI FT LQSSQARLLVTSAAFLPMYRQILRQSDTMLTDIWITDADAGEETNVMNFTQRKDRQPAT FT LRDVPPLSVDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALREDDVYLTVMP FT AFHIDCQCTAAMAAFSAGATFVLIEKYSARAFWQQVRKYRATVTECIPMMIRTLMAQPA FT TPQDRQHALREVMFYLNLSEQEKDAFIARFGVRLLTSYGMTETIVGIIGDRPGDKRRWP FT SIGRPGFCYEAEIRDEHNRVLPAGEIGEICIKGVPGKTIFKEYYARPDATAKALEPTGW FT LHTGDSGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVIGIKDSI FT RDEAIKAFVVLNEGETLTQEEFFSFCEQNMAKFKVPSFMEIRSDLPRNCSGKIIKKNLK FT " FT misc_feature complement(47820..49058) FT /gene="caiC" FT /locus_tag="ROD_00391" FT /note="HMMPfam hit to PF00501, AMP-dependent synthetase and FT ligase, score 5.8e-125" FT /inference="protein motif:PFAM:PF00501" FT misc_feature complement(48606..48641) FT /note="PS00455 Putative AMP-binding domain signature." FT /inference="protein motif:Prosite:PS00455" FT misc_feature complement(49101..49124) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(49229..50446) FT /transl_table=11 FT /gene="caiB" FT /locus_tag="ROD_00401" FT /product="crotonobetainyl-CoA:carnitine CoA-transferase" FT /EC_number="2.8.3.-" FT /db_xref="GOA:D2TGM4" FT /db_xref="InterPro:IPR003673" FT /db_xref="InterPro:IPR023452" FT /db_xref="InterPro:IPR023606" FT /db_xref="UniProtKB/TrEMBL:D2TGM4" FT /protein_id="CBG86821.1" FT /translation="MNRLSMPTFGPLAGVRVVFSGIEIAGPFAGQMFAEWGAEVIWIEN FT VAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARR FT GISDEVLWQHNPKLVIAHLSGFGQYGSEEYTHLPAYNTIAQAFSGYLIQNGDIDQPMPA FT FPYTADYFSGMTATTAALAALHKARETGKGESIDVAMYEVMLRMGQYFMMDYFNGGEIC FT PRMSKGKDPYYAGCGLYKCADGYIVMELVGITQISECFKDIGLEHLLGTPEVPQGTQLI FT HRIECPYGPLVEEKLDAWLASRTIAGVQARFAELNIACAKVLTIPELEDNPQYVARESI FT TQWQTLDGRTCKGPNIMPKFKNNPGKIWRGMPSHGMDTAAILQNIGYSEADIKKLVSKG FT LAKVED" FT misc_feature complement(49667..50242) FT /gene="caiB" FT /locus_tag="ROD_00401" FT /note="HMMPfam hit to PF02515, CoA-transferase family III, FT score 2.7e-97" FT /inference="protein motif:PFAM:PF02515" FT CDS complement(50550..51692) FT /transl_table=11 FT /gene="caiA" FT /locus_tag="ROD_00411" FT /product="crotonobetainyl-CoA dehydrogenase" FT /EC_number="1.3.99.-" FT /db_xref="GOA:D2TGK0" FT /db_xref="InterPro:IPR006089" FT /db_xref="InterPro:IPR006090" FT /db_xref="InterPro:IPR006091" FT /db_xref="InterPro:IPR006092" FT /db_xref="InterPro:IPR009075" FT /db_xref="InterPro:IPR009100" FT /db_xref="InterPro:IPR013786" FT /db_xref="InterPro:IPR023450" FT /db_xref="UniProtKB/TrEMBL:D2TGK0" FT /protein_id="CBG86822.1" FT /translation="MDFNFNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKA FT LAEMGIDSLLIPEEHGGLDAGFVTVAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTPE FT QIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRKNGKVYLNGSKCFITSSAYTP FT YIVVMARDGASPDKPVYTEWFVDMSKPGIKVNKLEKLGLRMDSCCEINFDDVELDEKDM FT FGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGETIGRFQLIQE FT KFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVG FT IAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR" FT misc_feature complement(50565..51014) FT /gene="caiA" FT /locus_tag="ROD_00411" FT /note="HMMPfam hit to PF00441, Acyl-CoA FT oxidase/dehydrogenase, type 1, score 9.4e-60" FT /inference="protein motif:PFAM:PF00441" FT misc_feature complement(50634..50693) FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT /inference="protein motif:Prosite:PS00073" FT misc_feature complement(51177..51332) FT /gene="caiA" FT /locus_tag="ROD_00411" FT /note="HMMPfam hit to PF02770, Acyl-CoA FT dehydrogenase/oxidase, central region, score 1.4e-16" FT /inference="protein motif:PFAM:PF02770" FT misc_feature complement(51288..51326) FT /note="PS00072 Acyl-CoA dehydrogenases signature 1." FT /inference="protein motif:Prosite:PS00072" FT misc_feature complement(51342..51677) FT /gene="caiA" FT /locus_tag="ROD_00411" FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal, score 4.7e-50" FT /inference="protein motif:PFAM:PF02771" FT CDS complement(51726..53243) FT /transl_table=11 FT /gene="caiT" FT /locus_tag="ROD_00421" FT /product="L-carnitine/gamma-butyrobetaine antiporter" FT /db_xref="GOA:D2TGK2" FT /db_xref="InterPro:IPR000060" FT /db_xref="InterPro:IPR018093" FT /db_xref="InterPro:IPR023449" FT /db_xref="UniProtKB/TrEMBL:D2TGK2" FT /protein_id="CBG86823.1" FT /translation="MSNQKKKSGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFS FT YVTNIWGWAFEWYMVVMLIGWFWLVFGPYAKKRLGDEKPEFSTASWIFMMFASCTSAAV FT LFWGSIEIYYYISTPPFALQANSTSAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFV FT RKMDVIRPSSTLAPLIGEKHAKGLPGTIIDNFYLVALIFAMGTSLGLATPLVTECMQYL FT FGIPHTLQLDAIIITCWIVLNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASF FT IMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISR FT GRTVRELCFGMVLGLTASTWILWTVLGSNTLLLMDKNIINIPQLIEQHGVARAIIETWA FT ALPLSTATMWGFFILCFIATVTLINACSYTLAMSTCREVREGDEPPLLVRIGWSVLVGV FT IGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDARVHWKDQ" FT misc_feature complement(51741..53204) FT /gene="caiT" FT /locus_tag="ROD_00421" FT /note="HMMPfam hit to PF02028, BCCT transporter, score FT 8.2e-297" FT /inference="protein motif:PFAM:PF02028" FT misc_feature complement(join(51762..51830,51843..51911,51948..52016, FT 52146..52205,52242..52310,52386..52454,52491..52559, FT 52602..52661,52755..52823,52902..52970,53028..53096, FT 53154..53207)) FT /gene="caiT" FT /locus_tag="ROD_00421" FT /note="12 probable transmembrane helices predicted for FT ROD00421 by TMHMM2.0 at aa 13-30, 50-72, 92-114, 141-163, FT 195-214, 229-251, 264-286, 312-334, 347-366, 410-432, FT 445-467 and 472-494" FT misc_feature complement(51801..51833) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(52272..52301) FT /note="PS01303 BCCT family of transporters signature." FT /inference="protein motif:Prosite:PS01303" FT misc_feature complement(52947..52979) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 53357..53506 FT /transl_table=11 FT /locus_tag="ROD_00431" FT /product="putative membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TGK5" FT /protein_id="CBG86824.1" FT /translation="MGIRLRVFCYLYHTLMRQEEQADFGFYCFKINCFVVYLLAFSASD FT VQYW" FT misc_feature 53426..53485 FT /locus_tag="ROD_00431" FT /note="1 probable transmembrane helix predicted for FT ROD00431 by TMHMM2.0 at aa 24-43" FT CDS 53700..54473 FT /transl_table=11 FT /gene="fixA" FT /locus_tag="ROD_00441" FT /product="probable electron transfer flavoprotein subunit FT of oxidoreductase" FT /db_xref="GOA:D2TGK6" FT /db_xref="InterPro:IPR000049" FT /db_xref="InterPro:IPR012255" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR014730" FT /db_xref="UniProtKB/TrEMBL:D2TGK6" FT /protein_id="CBG86825.1" FT /translation="MKIITCYKSVPDEQDIAINRADGSLDFSKADGKISQYDLNAIEAA FT CQLKQQSDDVQIIALSVGGKALTSVKGRKDVLSRGPDELVVVIDEQFEQALPQHTTAAL FT AAAAQKLGFDLLICGDGSADLYAQQVSLLLGETLNIPAINGVSRILSLTENTLSVEREL FT EDETETLHIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFSALDAWSAQ FT TVAAPEQRARQRNVIEGDGEEQIAAFVESLRKIIN" FT misc_feature 53763..54344 FT /gene="fixA" FT /locus_tag="ROD_00441" FT /note="HMMPfam hit to PF01012, Electron transfer FT flavoprotein, alpha/beta-subunit, N-terminal, score FT 1.4e-58" FT /inference="protein motif:PFAM:PF01012" FT misc_feature 54174..54236 FT /note="PS01065 Electron transfer flavoprotein beta-subunit FT signature." FT /inference="protein motif:Prosite:PS01065" FT CDS 54485..55426 FT /transl_table=11 FT /gene="fixB" FT /locus_tag="ROD_00451" FT /product="probable electron transfer flavoprotein subunit FT of oxidoreductase" FT /db_xref="GOA:D2TGL5" FT /db_xref="InterPro:IPR001308" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR014730" FT /db_xref="InterPro:IPR014731" FT /db_xref="InterPro:IPR018206" FT /db_xref="UniProtKB/TrEMBL:D2TGL5" FT /protein_id="CBG86826.1" FT /translation="MSKFSSVWVFSDTASRLPELMSGARALGEQVNAFVENAAEETMVI FT QSGADRAWLLRGKPENRMVEDYANVMARTIRQQASEGLVLLPNTRRGKLLAAKLGYRLA FT AAVSNDASEIGGQDGQAVVRHMVYGGLATGEEVIASPFAVITVNSGTFEAQQPDTSRSG FT ETQVVEWQAPDITVTRTATQPRQSSSVNLDKARLVVSVGRGIGSKENIALAEALCQAIG FT AELACSRPVAENEKWMAHERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQTICAIN FT KDKNAPIFQYADYGIVGDALKILPALTAALSR" FT misc_feature 54500..55030 FT /gene="fixB" FT /locus_tag="ROD_00451" FT /note="HMMPfam hit to PF01012, Electron transfer FT flavoprotein, alpha/beta-subunit, N-terminal, score FT 3.4e-38" FT /inference="protein motif:PFAM:PF01012" FT misc_feature 55049..55309 FT /gene="fixB" FT /locus_tag="ROD_00451" FT /note="HMMPfam hit to PF00766, Electron transfer FT flavoprotein, alpha subunit, C-terminal, score 7e-42" FT /inference="protein motif:PFAM:PF00766" FT misc_feature 55247..55327 FT /note="PS00696 Electron transfer flavoprotein alpha-subunit FT signature." FT /inference="protein motif:Prosite:PS00696" FT CDS 55448..56734 FT /transl_table=11 FT /gene="fixC" FT /locus_tag="ROD_00461" FT /product="FAD-dependent oxidoreductase" FT /db_xref="GOA:D2TGL6" FT /db_xref="InterPro:IPR003042" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/TrEMBL:D2TGL6" FT /protein_id="CBG86827.1" FT /translation="MSEDIFDAIVVGAGLAGSVAALVLAREGAQVLVIERGNSPGAKNV FT TGGRIYAHSLERIIPGFAEQAPVERRIVREKLAFMTDCGAMTVDYLNAEEAASAGGSYS FT VLRSRFDAWLMEQAEAAGAQLIAGIRVDNVVQREGRVVGVEADGEIIESKVVILADGVN FT SLLAEKLGMAKRVEAAQVAVGVKELIELPKSVIEDRFQLQGNEGAACLFAGSPTDGLMG FT GGFLYTNENTLSLGLVCGLHQLKEAKKSVPQMLEDFKHHPAVAPLIAGGRLVEYAAHLV FT PEAGLAMQPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAVAAGEAAAKTVLSAMQRNDF FT SRQGLAEYRQRLEDGPLRDMRMYQRLPAFLDNPRMFTRYPEMAVGIARDLFSVDGSAPV FT PMRKKILRHAKQVGFINLIRDGLKGASVL" FT misc_feature 55466..56437 FT /gene="fixC" FT /locus_tag="ROD_00461" FT /note="HMMPfam hit to PF01266, FAD dependent FT oxidoreductase, score 4e-15" FT /inference="protein motif:PFAM:PF01266" FT CDS 56731..57018 FT /transl_table=11 FT /gene="fixX" FT /locus_tag="ROD_00471" FT /product="ferredoxin like protein" FT /db_xref="GOA:D2TGL7" FT /db_xref="InterPro:IPR012206" FT /db_xref="UniProtKB/TrEMBL:D2TGL7" FT /protein_id="CBG86828.1" FT /translation="MTSPVNVDVKLGVNKFNVDEEYPHIVVKEEPDRLTLDLLVKACPA FT GLYKKQDDGSVRFDYAGCLECGTCRILGLDSALEEWQYPRGTFGVEFRYG" FT repeat_region complement(57085..58379) FT /note="Insertion sequence ISCro4. No inverted or direct FT repeats apparent. 1 of 13 100% identical ISCro4 elements in FT CR chromosome" FT CDS complement(57194..58174) FT /transl_table=11 FT /locus_tag="ROD_00481" FT /product="ISCro4 transposase" FT /db_xref="GOA:D2TGM5" FT /db_xref="InterPro:IPR002525" FT /db_xref="InterPro:IPR003346" FT /db_xref="InterPro:IPR003583" FT /db_xref="UniProtKB/TrEMBL:D2TGM5" FT /protein_id="CBG86829.1" FT /translation="MEQELHFIGIDVSKAKLDVDVLRPDGRHRSKKFANTPKGHDELLR FT WLSGHRVAPAHICMEATSTYMEDVAAHLSDAGYTVSVINPALGKAFAQSEGLRSKTDAV FT DARMLAEFCRQKRPPAWEAPHPVERALRALVLRHQSLTDMHTQELNRLETAREVQRPSI FT DAHLLWLHAELKRIEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYTGLKERF FT THARQFAAFAGLTPRRYESGSSVNRASRMSKAGHASLRRALYMPAMVAVSKTEWGRAFR FT DRLAGNGKKGKVIIGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA" FT misc_feature complement(57323..57589) FT /locus_tag="ROD_00481" FT /note="HMMPfam hit to PF02371, Transposase, FT IS116/IS110/IS902, score 1.2e-27" FT /inference="protein motif:PFAM:PF02371" FT misc_feature complement(57668..57958) FT /locus_tag="ROD_00481" FT /note="HMMPfam hit to PF01548, Transposase, FT IS111A/IS1328/IS1533, score 1.2e-17" FT /inference="protein motif:PFAM:PF01548" FT CDS 58420..59751 FT /transl_table=11 FT /locus_tag="ROD_00491" FT /product="major facilitator superfamily protein" FT /db_xref="GOA:D2TGE6" FT /db_xref="InterPro:IPR005828" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TGE6" FT /protein_id="CBG86830.1" FT /translation="MQQPRNFEDIKFSSIHRRIMLWGSGGPFLDGYVLVIIGVALEQLT FT PALKLDAGWLGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISLATMFVS FT SPVELLIMRILIGVVIGADYPIATSMITEFSSTRQRAFAISFIAAMWYVGATCADLVGY FT WLYDVDGGWRWMFGSAAIPCLFILIGRFDLPESPRWLLRKGRVKECEEMMMKLFGEPVA FT FDEEPPQETHFLQLFNRRHLPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGAGKSA FT ALGNVVISLFFMLGCIPPMFWLNSAGRRPLLIGSFVMMTLALAVLGLIPEMGSWLVVAA FT FAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTILSTWALPIFITRYGI FT SHVMLMGAGISLAGLLISIAFAPETRGLTLAETSSMTFRRWPLY" FT misc_feature join(58474..58542,58579..58647,58672..58731,58744..58812, FT 58849..58917,58930..58998,59149..59217,59260..59328, FT 59347..59415,59425..59493,59530..59598,59611..59679) FT /locus_tag="ROD_00491" FT /note="12 probable transmembrane helices predicted for FT ROD00491 by TMHMM2.0 at aa 19-41, 54-76, 85-104, 109-131, FT 144-166, 171-193, 244-266, 281-303, 310-332, 336-358, FT 371-393 and 398-420" FT misc_feature 58486..59604 FT /locus_tag="ROD_00491" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 8.9e-35" FT /inference="protein motif:PFAM:PF07690" FT misc_feature 59275..59307 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 59689..59736 FT /note="PS00038 Myc-type, 'helix-loop-helix' dimerization FT domain signature." FT /inference="protein motif:Prosite:PS00038" FT CDS 59856..60089 FT /transl_table=11 FT /locus_tag="ROD_00501" FT /product="putative lipoprotein" FT /db_xref="InterPro:IPR010305" FT /db_xref="UniProtKB/TrEMBL:D2TGE7" FT /protein_id="CBG86831.1" FT /translation="MQKKLFIASIFAAATVFTVAGCSSDQAVRTTDGKTIVTDGKPQVD FT DDTGMVSYKNAETGQTEQINRDQLKNMSELDN" FT sig_peptide 59856..59936 FT /locus_tag="ROD_00501" FT /note="Signal peptide predicted for ROD00501 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.553 between residues 27 and 28" FT misc_feature 59859..60080 FT /locus_tag="ROD_00501" FT /note="HMMPfam hit to PF06004, Protein of unknown function FT DUF903, bacterial, score 1.2e-39" FT /inference="protein motif:PFAM:PF06004" FT misc_feature 59868..59927 FT /locus_tag="ROD_00501" FT /note="1 probable transmembrane helix predicted for FT ROD00501 by TMHMM2.0 at aa 5-24" FT misc_feature 59889..59921 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(60142..63009) FT /transl_table=11 FT /locus_tag="ROD_00511" FT /product="putative adhesin autotransporter" FT /db_xref="GOA:D2TGE8" FT /db_xref="InterPro:IPR004899" FT /db_xref="InterPro:IPR005546" FT /db_xref="InterPro:IPR006315" FT /db_xref="InterPro:IPR011050" FT /db_xref="InterPro:IPR012332" FT /db_xref="InterPro:IPR013425" FT /db_xref="UniProtKB/TrEMBL:D2TGE8" FT /protein_id="CBG86832.1" FT /translation="MVNKCFSLNHATRILKQIFPAVILFTPIISHAETIISESTSTPQT FT FAEDSSFTINKDVTISSSSDEAAVTMNSTMISSMTNKGNISGTGDALYVNTGAQRVTIT FT NDEQAVISSTTANAINIRSLRGDIVNNGKITGATNGIYIGPGLSGLNITNSETGNITGT FT TGIYTKSGLGLDNTGVIKGTNGDGIHSESGDAKITNTSTISGTRYGIYASNTTKMDIIS FT SGIISGKEAAIFFNSASINTLTLDTGSELVGNVVSAVSKENTITLIGSGSEDSSFIGLE FT EDDGFASLTMKGKDWSLTGDVDLIGTGETLLVNSGKLTLGGNVANSGSTHIQQNATLQL FT GDGQKKASLTGKVINEGTFIFNQGENSTYSGDITGSGNVEKTDANVLTLSGNNTYTGNT FT QLHAGVTLVAEGATLGAEGSNATLTIEDGAAFASAGTVYDNIAILSGGTLAAWNAVAGN FT SLSTSSTVDTINGNVSNSGTLLIGGQNNAVGNNFIINGDYTGAAGSRIVMNSKPGDDNA FT PTDRLSIKGSSYGVSDLVVNNVGGMGALTVNGMEVINVGGNSNAEFTLAKPVVAGAWEY FT NLFQHENGNWYLESKAASSDDDSDSNDGGNSGDDGNGGDSGNGGDGGNGGNGGNGDDDG FT NGGDGGNSSPEIMAPEVGAYLGNYQAAQGMFLHKRDDRDQLTLRGEDDLNTWLYVKGRY FT HENDVAGDKLSYDTTSTVLQIGTDFVSKPLDKGILHAGAMAGAGQAKTHSDSKNNARNA FT QGKVDGFNVGIYATWQEDEKLRLGSYIDTWAAYSWYNNNVSSNRNDEDYNSEGFAASLE FT AGHAWVIDSERQRTWKIEPQVQVIYSYLDQDNHTDPDGVRVTQLDNDSVFGRLGVKSSY FT FDRQDVQAWQPYVAVNWLKGAGQNELAFNSESISNDTPEDRGQLELGVTGNLNETTTFS FT VRISGEWGKNSYDAYGGHILLNHRW" FT misc_feature complement(60172..60966) FT /locus_tag="ROD_00511" FT /note="HMMPfam hit to PF03797, Autotransporter beta-domain, FT score 2.9e-24" FT /inference="protein motif:PFAM:PF03797" FT misc_feature complement(61240..61614) FT /locus_tag="ROD_00511" FT /note="HMMPfam hit to PF03212, Pertactin, score 0.00051" FT /inference="protein motif:PFAM:PF03212" FT sig_peptide complement(62914..63009) FT /locus_tag="ROD_00511" FT /note="Signal peptide predicted for ROD00511 by SignalP 2.0 FT HMM (Signal peptide probability 0.733) with cleavage site FT probability 0.732 between residues 32 and 33" FT CDS 63395..63925 FT /transl_table=11 FT /gene="kefF" FT /locus_tag="ROD_00521" FT /product="glutathione-regulated potassium-efflux system FT ancillary protein" FT /db_xref="GOA:D2TGF0" FT /db_xref="InterPro:IPR003680" FT /db_xref="InterPro:IPR023948" FT /db_xref="UniProtKB/TrEMBL:D2TGF0" FT /protein_id="CBG86833.1" FT /translation="MILIIYAHPYPQHSHANKRMLEQVRTLEEVEIRSLYQLYPDFNID FT IAAEQQALSRADLIIWQHPMQWYSVPPLLKLWFDKVLSHGWAYGHGGTALRGKQVMWAV FT TTGGGEGHFDIGSYPGFDVLSQPLQATALYCGLNWLPPFAMHCTFSCDDETLQAQARQY FT RQRLLSWLETHHG" FT misc_feature 63398..63910 FT /gene="kefF" FT /locus_tag="ROD_00521" FT /note="HMMPfam hit to PF02525, Flavodoxin-like fold, score FT 2.9e-54" FT /inference="protein motif:PFAM:PF02525" FT CDS 63918..65792 FT /transl_table=11 FT /gene="kefC" FT /locus_tag="ROD_00531" FT /product="glutathione-regulated potassium-efflux system FT protein" FT /db_xref="GOA:D2TGF1" FT /db_xref="InterPro:IPR003148" FT /db_xref="InterPro:IPR004771" FT /db_xref="InterPro:IPR006036" FT /db_xref="InterPro:IPR006153" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR023941" FT /db_xref="UniProtKB/TrEMBL:D2TGF1" FT /protein_id="CBG86834.1" FT /translation="MDSHTLIQALIYLGSAALIVPVAVRLGLGSVLGYLIAGCIIGPWG FT LRLVTDAESILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMAVCGGLIGLF FT CALLGLRWPVAALTGMTLALSSTAIAMQAMNERNLTVSQMGRSAFAVLLFQDIAAIPLV FT AMIPLLATSGAATTLGAFALSALKVAGALVLVILLGRYVTRPALRFVARSGLREVFSAV FT ALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVG FT MSIDFGTLIENPLRIAILLAGFLVIKIGILWLIARPLSVPNKQRRWFAVLLGQGSEFAF FT VVFGAARMAEVLDPEWAKALTLAVALSMAATPVLLVILSRLEASAAGDEREADEIDEEQ FT PRVIIAGFGRFGQIAGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMELLES FT AGAAKAEVLINAIDDPQTSLQLTEMVKAHFPNLHIIARARDVDHYIRLRQVGVAQPERE FT TFEGALKSGRLALESLGLGRYEARERAYLFRRYNTRMVEEMAKGENDATSRAAVYKRTS FT AMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNPADEPEVKPSARVKV" FT misc_feature join(63930..63989,63993..64052,64080..64139,64173..64241, FT 64251..64319,64356..64424,64452..64520,64557..64616, FT 64626..64679,64716..64784,64794..64862,64896..64964, FT 64992..65060) FT /gene="kefC" FT /locus_tag="ROD_00531" FT /note="13 probable transmembrane helices predicted for FT ROD00531 by TMHMM2.0 at aa 5-24, 26-45, 55-74, 86-108, FT 112-134, 147-169, 179-201, 214-233, 237-254, 267-289, FT 293-315, 327-349 and 359-381" FT misc_feature 63945..65045 FT /gene="kefC" FT /locus_tag="ROD_00531" FT /note="HMMPfam hit to PF00999, Sodium/hydrogen exchanger, FT score 3.6e-68" FT /inference="protein motif:PFAM:PF00999" FT misc_feature 64002..64034 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 65121..65459 FT /gene="kefC" FT /locus_tag="ROD_00531" FT /note="HMMPfam hit to PF02254, TrkA-N, score 1.8e-34" FT /inference="protein motif:PFAM:PF02254" FT CDS 65839..65973 FT /transl_table=11 FT /locus_tag="ROD_00541" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TGF2" FT /protein_id="CBG86835.1" FT /translation="MPGVHYQVVDSPAERKIFVLLLFSSVDERMLFTYSGDNFFVSGK" FT CDS 65977..66456 FT /transl_table=11 FT /gene="folA" FT /locus_tag="ROD_00551" FT /product="dihydrofolate reductase" FT /EC_number="1.5.1.3" FT /db_xref="GOA:D2TGF3" FT /db_xref="InterPro:IPR001796" FT /db_xref="InterPro:IPR012259" FT /db_xref="InterPro:IPR017925" FT /db_xref="InterPro:IPR024072" FT /db_xref="UniProtKB/TrEMBL:D2TGF3" FT /protein_id="CBG86836.1" FT /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRH FT TWESIGRPLPGRKNIVISSQPGTDDRVQWVKSVDEAIAACGDAPEIMVIGGGRVYEQFL FT PKAQKLYLTHIDAEVEGDTHFPDYDPDDWESVFSEFHDADAQNSHSYCFEILERR" FT misc_feature 65977..66450 FT /gene="folA" FT /locus_tag="ROD_00551" FT /note="HMMPfam hit to PF00186, Dihydrofolate reductase FT region, score 4.5e-59" FT /inference="protein motif:PFAM:PF00186" FT misc_feature 65995..66024 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT /inference="protein motif:Prosite:PS00339" FT misc_feature 66013..66081 FT /note="PS00075 Dihydrofolate reductase signature." FT /inference="protein motif:Prosite:PS00075" FT CDS complement(66501..67349) FT /transl_table=11 FT /gene="apaH" FT /locus_tag="ROD_00561" FT /product="bis(5'-nucleosyl)-tetraphosphatase" FT /db_xref="GOA:D2TGF4" FT /db_xref="InterPro:IPR004617" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/TrEMBL:D2TGF4" FT /protein_id="CBG86837.1" FT /translation="MATYLIGDVHGCYDELIALLDQVTFTPESDTLWLTGDLVARGPGS FT LDVLRFVKSLDDSVRLVLGNHDLHLLAVFAGISRNKPKDRLNALLEAPDADELLNWLRR FT QPLLQVDEGKKLVMAHAGITPQWDLQTARECARDVEAVLSSDSYPFFLDAMYGDMPNNW FT SPELSGLARLRFITNAFTRMRYCFPNGQLDMYSKESPENAPAPLKPWFAIPGPVSEEYS FT IVFGHWASLEGKGTPEGIYALDTGCCWGGELTCLRWEDKRYFVQPSNRQMDLGEGEAVN FT A" FT misc_feature complement(66900..67349) FT /gene="apaH" FT /locus_tag="ROD_00561" FT /note="HMMPfam hit to PF00149, Metallophosphoesterase, FT score 5e-17" FT /inference="protein motif:PFAM:PF00149" FT CDS complement(67360..67737) FT /transl_table=11 FT /gene="apaG" FT /locus_tag="ROD_00571" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007474" FT /db_xref="InterPro:IPR023065" FT /db_xref="UniProtKB/TrEMBL:D2TGF5" FT /protein_id="CBG86838.1" FT /translation="MINSPRVCVQVQSVYIEAQSSPEDERYVFAYTVTIRNLGRAPVQL FT LGRYWLITNGHGRETEVQGEGVVGMQPHIAPGEEYQYTSGAVIETPLGTMQGHYEMIDE FT NGVAFTIDIPVFRLAVPTLIH" FT misc_feature complement(67375..67737) FT /gene="apaG" FT /locus_tag="ROD_00571" FT /note="HMMPfam hit to PF04379, ApaG, score 8.2e-77" FT /inference="protein motif:PFAM:PF04379" FT CDS complement(67740..68561) FT /transl_table=11 FT /gene="ksgA" FT /locus_tag="ROD_00581" FT /product="dimethyladenosine transferase FT (S-adenosylmethionine-6-N',N'-adenosyl (rRNA) FT dimethyltransferase)" FT /EC_number="2.1.1.-" FT /db_xref="GOA:D2TGF6" FT /db_xref="InterPro:IPR001737" FT /db_xref="InterPro:IPR011530" FT /db_xref="InterPro:IPR020596" FT /db_xref="InterPro:IPR020598" FT /db_xref="InterPro:IPR023165" FT /db_xref="UniProtKB/TrEMBL:D2TGF6" FT /protein_id="CBG86839.1" FT /translation="MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIG FT PGLAALTEPVGERLDRLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKM FT GQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVM FT AQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRR FT KTIRNSLGNLFSVEVLTELGVDPAMRAENISVAQYCRMANYLAENAPLKES" FT misc_feature complement(67764..68540) FT /gene="ksgA" FT /locus_tag="ROD_00581" FT /note="HMMPfam hit to PF00398, Ribosomal RNA adenine FT methylase transferase, score 2e-108" FT /inference="protein motif:PFAM:PF00398" FT misc_feature complement(68358..68441) FT /note="PS01131 Ribosomal RNA adenine dimethylases FT signature." FT /inference="protein motif:Prosite:PS01131" FT CDS complement(68558..69547) FT /transl_table=11 FT /gene="pdxA" FT /locus_tag="ROD_00591" FT /product="4-hydroxythreonine-4-phosphate dehydrogenase" FT /EC_number="1.1.1.262" FT /db_xref="GOA:D2TGF7" FT /db_xref="InterPro:IPR005255" FT /db_xref="UniProtKB/TrEMBL:D2TGF7" FT /protein_id="CBG86840.1" FT /translation="MTVARRVVITPGEPAGIGPDLLVQLAQREWPVELVVCADPTLLTE FT RAALLGLPLSLLPYAPHSPATPQAVGTLTLLPIALRASVTPGRLAVENGEYVVQTLARA FT CDGCLQGEFAALITGPVHKGVINDAGVPFTGHTEFFEQRSQTKKVVMMLATEELRVALA FT TTHLPLRDVADAITPELLHEVIGILHHDLRSKFGVADPRILVCGLNPHAGEGGHMGTEE FT IDTINPVLDTLRKQGMKLTGPLPADTLFQPKYLQQADAVLAMYHDQGLPVLKYQGFGRG FT VNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ" FT misc_feature complement(68582..69475) FT /gene="pdxA" FT /locus_tag="ROD_00591" FT /note="HMMPfam hit to PF04166, Pyridoxal phosphate (active FT vitamin B6) biosynthesis PdxA, score 4.7e-179" FT /inference="protein motif:PFAM:PF04166" FT CDS complement(69547..70833) FT /transl_table=11 FT /gene="surA" FT /locus_tag="ROD_00601" FT /product="chaperone precursor (peptidyl-prolyl cis-trans FT isomerase)" FT /EC_number="5.2.1.8" FT /db_xref="GOA:D2TGF8" FT /db_xref="InterPro:IPR000297" FT /db_xref="InterPro:IPR008880" FT /db_xref="InterPro:IPR015391" FT /db_xref="InterPro:IPR023034" FT /db_xref="InterPro:IPR023058" FT /db_xref="UniProtKB/TrEMBL:D2TGF8" FT /protein_id="CBG86841.1" FT /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGL FT MQSVKLNASQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANIA FT RQNNMTLDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRVTILPQEVEALAQQ FT VGNQNDASTELNLSHILIPLPENPTSDQVSEAEAQARSIVDQARSGSDFGKLAIAYSAD FT QQALKGGQMGWGRIQELPGIFAQALSTAKKGDVVGPIRSGVGFHILKVNDMRGQNQSIS FT VTEVHARHILLKPSPIMTDQQARQKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGD FT LGWAAADIFDPAFRDALTRMNKGQISAPVHSSFGWHLIELLDTRSVDKTDAAQKDRAYR FT MLMNRKFSEEAATWMQEQRASAYVKILSN" FT misc_feature complement(69688..69969) FT /gene="surA" FT /locus_tag="ROD_00601" FT /note="HMMPfam hit to PF00639, Peptidyl-prolyl cis-trans FT isomerase, PpiC-type, score 2.3e-49" FT /inference="protein motif:PFAM:PF00639" FT misc_feature complement(69808..69873) FT /note="PS01096 PpiC-type peptidyl-prolyl cis-trans FT isomerase signature." FT /inference="protein motif:Prosite:PS01096" FT misc_feature complement(69877..69900) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(70018..70302) FT /gene="surA" FT /locus_tag="ROD_00601" FT /note="HMMPfam hit to PF00639, Peptidyl-prolyl cis-trans FT isomerase, PpiC-type, score 1.7e-41" FT /inference="protein motif:PFAM:PF00639" FT misc_feature complement(70138..70200) FT /note="PS01096 PpiC-type peptidyl-prolyl cis-trans FT isomerase signature." FT /inference="protein motif:Prosite:PS01096" FT misc_feature complement(70351..70761) FT /gene="surA" FT /locus_tag="ROD_00601" FT /note="HMMPfam hit to PF09312, SurA N-terminal domain, FT score 2.1e-88" FT /inference="protein motif:PFAM:PF09312" FT sig_peptide complement(70774..70833) FT /gene="surA" FT /locus_tag="ROD_00601" FT /note="Signal peptide predicted for ROD00601 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 20 and 21" FT CDS complement(70887..73244) FT /transl_table=11 FT /gene="imp" FT /locus_tag="ROD_00611" FT /product="organic solvent tolerance protein precursor" FT /db_xref="GOA:D2TGF9" FT /db_xref="InterPro:IPR005653" FT /db_xref="InterPro:IPR007543" FT /db_xref="InterPro:IPR020889" FT /db_xref="UniProtKB/TrEMBL:D2TGF9" FT /protein_id="CBG86842.1" FT /translation="MKKRIPTLLATMIATALYSQQGLAASLASQCMLGVPSYDRPLVQG FT ETNELPVTINADSAKGNYPDDAVFTGNVDIMQGNSRLQADEVQLHQKAAPGQQEPIRTV FT DALGNVHYDDNQVILKGPKGWANLNTKDTNVWKGDYQMVGRQGRGKADLMKQRGENRYT FT ILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGD FT KRRSGFLIPNAKYTSKNYFEFYLPYYWNIAPNMDATITPHYMHRRGGIMWENEFRYLSQ FT AGAGLMEFDYLNSDDVYEDEHPQDDNSRRWLFYWQHSGVMDQVWRFNIDYTKVSDPTYF FT NDFDNKYGSSTDGYATQKFSVGYAVQNFDATVSSKQFQVFDTRNSNSYSAQPQLDVNYY FT HNDLGPFDTRIYGQAVHFVNTNDNRPEATRLHLEPTINLPLSNAWGSLNTEAKLLATHY FT QQTNLDWYNNTYKNTPLDDSANRVMPQFKVDGKMVFERDMNMLAPGYTQTMEPRVQYLY FT VPYRDQSKIYNYDSSLLQSDYTGLFRDRTYGGLDRIASANQVTTGVTSRVYDDATVERF FT NISVGQIYYFTESRTGDDNIKWENDDQKGSLVWAGDTYWRISDRWGLRGGIQYDTRLDS FT VATSSSSIEYRRDEDRMLQLNYRYASPEYIQATLPSYYSTAEQYRNGISQIGSVASWPI FT ADRWSIVGAYYYDTNVNKPADQMLGLQYNSCCYAIRVGYERKLNGWDNDKEHAVYDNII FT GFNIELRGLSSNYGLGTTEMLRSNILPYQSSL" FT misc_feature complement(71151..72323) FT /gene="imp" FT /locus_tag="ROD_00611" FT /note="HMMPfam hit to PF04453, Organic solvent tolerance FT protein, score 4.9e-150" FT /inference="protein motif:PFAM:PF04453" FT misc_feature complement(72660..73229) FT /gene="imp" FT /locus_tag="ROD_00611" FT /note="HMMPfam hit to PF03968, OstA-like protein, score FT 1.2e-66" FT /inference="protein motif:PFAM:PF03968" FT sig_peptide complement(73173..73244) FT /gene="imp" FT /locus_tag="ROD_00611" FT /note="Signal peptide predicted for ROD00611 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.987 between residues 24 and 25" FT CDS 73499..74314 FT /transl_table=11 FT /gene="djlA" FT /locus_tag="ROD_00621" FT /product="DnaJ-like protein" FT /db_xref="GOA:D2TGG0" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003095" FT /db_xref="InterPro:IPR007791" FT /db_xref="InterPro:IPR023749" FT /db_xref="UniProtKB/TrEMBL:D2TGG0" FT /protein_id="CBG86843.1" FT /translation="MQYWGKIIGVAVALIMGGGFWGVVLGLLIGHMFDKARSRKMAWFA FT NQRERQALFFATTFEVMGHLTKSKGRVTEADIHIANVLMDRMNLHGESRSAAQNAFRVG FT KSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNEREVLYVIAEELGI FT SRMQFEQFLRMMQGGAQFGGGYQQQSGSGSWQQAQRGPTLEDACNVLGVKPTDDATTIK FT RAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAYELIKEQKGFK" FT misc_feature 73517..73585 FT /gene="djlA" FT /locus_tag="ROD_00621" FT /note="1 probable transmembrane helix predicted for FT ROD00621 by TMHMM2.0 at aa 7-29" FT misc_feature 73952..74017 FT /note="Predicted helix-turn-helix motif with score FT 1088.000, SD 2.89 at aa 152-173, sequence FT EVLYVIAEELGISRMQFEQFLR" FT misc_feature 74123..74284 FT /gene="djlA" FT /locus_tag="ROD_00621" FT /note="HMMPfam hit to PF00226, Heat shock protein DnaJ, FT N-terminal, score 2.3e-12" FT /inference="protein motif:PFAM:PF00226" FT CDS complement(74424..75083) FT /transl_table=11 FT /gene="rluA" FT /locus_tag="ROD_00631" FT /product="ribosomal large subunit pseudouridine synthase A" FT /EC_number="5.4.99.-" FT /db_xref="GOA:D2TGG2" FT /db_xref="InterPro:IPR006145" FT /db_xref="InterPro:IPR006224" FT /db_xref="InterPro:IPR006225" FT /db_xref="InterPro:IPR020103" FT /db_xref="UniProtKB/TrEMBL:D2TGG2" FT /protein_id="CBG86844.1" FT /translation="MGMENYNPPREPWLVVLYQDEHIMVVNKPSGLLSVPGRLEEHKDS FT IMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHP FT VPAEGVVDLPLICDWPNRPKQKVCYETGKAAQTGYEVVEYAADNTARVVLKPTTGRSHQ FT LRVHMLALGHPILGDRFYASPEALAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF" FT misc_feature complement(74574..75020) FT /gene="rluA" FT /locus_tag="ROD_00631" FT /note="HMMPfam hit to PF00849, Pseudouridine synthase, FT score 1.3e-59" FT /inference="protein motif:PFAM:PF00849" FT misc_feature complement(74862..74906) FT /note="PS01129 Rlu family of pseudouridine synthase FT signature." FT /inference="protein motif:Prosite:PS01129" FT CDS complement(75095..78001) FT /transl_table=11 FT /gene="rapA" FT /locus_tag="ROD_00641" FT /product="RNA polymerase-associated protein" FT /EC_number="3.6.1.-" FT /db_xref="GOA:D2TGG3" FT /db_xref="InterPro:IPR000330" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR022737" FT /db_xref="InterPro:IPR023949" FT /db_xref="UniProtKB/TrEMBL:D2TGG3" FT /protein_id="CBG86845.1" FT /translation="MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFPSTGENRLYAR FT SDSPVTRVMFNPGDTITNHEGWQLHVEEVKEENGLLAYIGTRLDTEENGVMLREVLLDS FT KLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAH FT DVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRR FT FNLRFALFDDERYAEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLCEAEWDLLVVDE FT AHHLVWSVDAPSREYQAIEQLAEHIPGVLLLTATPEQLGMESHFARLRLLDPDRFHDFT FT QFVEEQKNYRPVADAVAMLLAGNKLSNEELNMLGELIGEQDIEPLLQAANSDRDGAQSA FT REELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK FT SAEDRARDMLYPEQIYQEFEGDSGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTAL FT QLEQVLREREGIRAAVFHEGMSIIERDRAAAWFGEEDSGAQVLLCSEIGSEGRNFQFAS FT NLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHT FT CPTGRAIYDSVYHNLIGYLAAPEEADGFDELIKACREQHEALKAQLEQGRDRLLEIHSN FT GGEKAQKLAESIEEQDDDTSLIAFAMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPG FT LPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVG FT TLLLELVYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLSAVNRH FT TGSKLVNAVQQDVHAILQQGEAQIEKSARALIEAARNEADEKLSAELSRLEALRAVNPN FT IRDDELAAIESNRQQVLESLSQAGWRLDALRLIVVTHQ" FT misc_feature complement(76199..76435) FT /gene="rapA" FT /locus_tag="ROD_00641" FT /note="HMMPfam hit to PF00271, DNA/RNA helicase, FT C-terminal, score 3.2e-19" FT /inference="protein motif:PFAM:PF00271" FT misc_feature complement(76640..77533) FT /gene="rapA" FT /locus_tag="ROD_00641" FT /note="HMMPfam hit to PF00176, SNF2-related, score 1.7e-86" FT /inference="protein motif:PFAM:PF00176" FT CDS complement(78200..80551) FT /transl_table=11 FT /gene="polB" FT /locus_tag="ROD_00651" FT /product="DNA polymerase II" FT /EC_number="2.7.7.7" FT /db_xref="GOA:D2TGG5" FT /db_xref="InterPro:IPR006133" FT /db_xref="InterPro:IPR006134" FT /db_xref="InterPro:IPR006172" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR017964" FT /db_xref="InterPro:IPR023211" FT /db_xref="UniProtKB/TrEMBL:D2TGG5" FT /protein_id="CBG86846.1" FT /translation="MAQAGFILTRHWRDTPQGTEISFWLATDSGPLLASLAPQESVAFI FT PEQHVPRVKSLLGSENGFRLTPLNLKDFHRQPVSGLYCRSHRQLMRLEKLLRENGVTVY FT EGDVRPPERYLMERFITAPVWVDGEARDGALVNARLKPHPDYRPPLRWLSLDIETTRHG FT ELYCIGLEGCGQRIVYMLGPANGDASGLDFQLEYVTSRPQLLEKLNEWIARHDPDVIIG FT WNLVQFDLRMLQKHAERYRIPLRFGRDSSELEWREHGFKNGVYFAQAKGRLIIDGIEAL FT KSAFWNFSSFSLEAVSQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVT FT KIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHAS FT PGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAHPDPQHSTEGFLDAW FT FSREKHCLPEIVTAIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLAS FT SITMRGHAIMRQTKALIEAQGYDVIYGDTDSTFVWLKRARSEEEAAQIGRSLVAHVNAW FT WQQELQRQNLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDAQRMVFKGLE FT TVRTDWTPLAQQFQQELYLRIFRHEPYQDYVRETIDKLMAGELDDRLVYRKRLRRPLSE FT YQRNVPPHVRAARLADEENLKRGRPAQYQNRGTIQYLWTVNGPEPRDYQRSPLDYEHYL FT TRQLQPVAEGILPFIDDNFATLLTGQLGLF" FT misc_feature complement(78431..79084) FT /gene="polB" FT /locus_tag="ROD_00651" FT /note="HMMPfam hit to PF00136, DNA polymerase, B region, FT score 1e-30" FT /inference="protein motif:PFAM:PF00136" FT misc_feature complement(78899..78925) FT /note="PS00116 DNA polymerase family B signature." FT /inference="protein motif:Prosite:PS00116" FT misc_feature complement(79028..79060) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(79664..80479) FT /gene="polB" FT /locus_tag="ROD_00651" FT /note="HMMPfam hit to PF03104, DNA polymerase B, FT exonuclease, score 1.4e-54" FT /inference="protein motif:PFAM:PF03104" FT CDS 80956..81339 FT /transl_table=11 FT /locus_tag="ROD_00661" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TGG6" FT /protein_id="CBG86847.1" FT /translation="MNVCNHMQQSDYLNYFFVNTLIVRPYLKTVSRFIEYKTWTGQIWR FT SEVIEDGNAFFHWQGTDRINGHRDTVINYFLHGQKWQSTITDYIFFHSLEGEEVRGYFD FT NVIKYVSPNSFMLKSTFAECVPE" FT CDS complement(81375..82070) FT /transl_table=11 FT /gene="araD" FT /locus_tag="ROD_00671" FT /product="L-ribulose-5-phosphate 4-epimerase" FT /EC_number="5.1.3.4" FT /db_xref="GOA:D2TGG7" FT /db_xref="InterPro:IPR001303" FT /db_xref="InterPro:IPR004661" FT /db_xref="UniProtKB/TrEMBL:D2TGG7" FT /protein_id="CBG86848.1" FT /translation="MLEDLKRQVLEANLALPQHNLVTLTWGNVSAVDRERGVFVIKPSG FT VDYSVMSAEDMVVVSIATGEVVEGTKKPSSDTPTHRLLYQAFPTIGGIVHTHSRHATIW FT AQAGQSIPATGTTHADYFYGAIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAHM FT PGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPEMQQTLLDKHYLRK FT HGAKAYYGQ" FT misc_feature complement(81417..82052) FT /gene="araD" FT /locus_tag="ROD_00671" FT /note="HMMPfam hit to PF00596, Class II aldolase/adducin, FT N-terminal, score 6.9e-107" FT /inference="protein motif:PFAM:PF00596" FT CDS complement(82296..83798) FT /transl_table=11 FT /gene="araA" FT /locus_tag="ROD_00691" FT /product="L-arabinose isomerase" FT /EC_number="5.3.1.4" FT /db_xref="GOA:D2TGG8" FT /db_xref="InterPro:IPR003762" FT /db_xref="InterPro:IPR004216" FT /db_xref="InterPro:IPR009015" FT /db_xref="InterPro:IPR024664" FT /db_xref="UniProtKB/TrEMBL:D2TGG8" FT /protein_id="CBG86849.1" FT /translation="MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVKALNAEAKLP FT CKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTTLNKPLLQFH FT TQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAQARIGSW FT MRHAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSIS FT DGDINALIDEYESSYTLTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFED FT LHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFE FT KGNDLVLGSHMLEVCPTIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDL FT GDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALD FT LNDMRQFAEMHDIEIAVIDNDTRLPAFKDALRWNEVYYGFKR" FT misc_feature complement(82299..83798) FT /gene="araA" FT /locus_tag="ROD_00691" FT /note="HMMPfam hit to PF02610, L-arabinose isomerase, score FT 0" FT /inference="protein motif:PFAM:PF02610" FT CDS complement(83809..85518) FT /transl_table=11 FT /gene="araB" FT /locus_tag="ROD_00701" FT /product="ribulokinase" FT /EC_number="2.7.1.16" FT /db_xref="GOA:D2TGG9" FT /db_xref="InterPro:IPR000577" FT /db_xref="InterPro:IPR005929" FT /db_xref="InterPro:IPR018485" FT /db_xref="UniProtKB/TrEMBL:D2TGG9" FT /protein_id="CBG86850.1" FT /translation="MAIAIGLDFGSDSVRALAVDCATGDEVATSVEWYPRWQEGRYCDG FT PNNQFRHHPRDYIESMEAALKSVLAALSAAQRAEVVGIGVDSTGSTPAPIDADGNVLAL FT RPEFADNPNAMFVLWKDHTAVEEAEAITRLCHTPGKVDYSRYIGGIYSSEWFWAKILHV FT TRQDSAVAQAAVSWIELCDWVPALLSGTTRPQEIRRGRCSAGHKSLWHESWGGLPPASF FT FDELDPIINQHLAYPLFTETFTADLPVGTLCADWAQRLGLPQSVVISGGAFDCHMGAVG FT AGAQPNALVKVIGTSTCDILIADRQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGD FT IYAWFGRVLGWPLEQLAAQHPELKTQIQASQKQLLPALTEAWAKNPSLDHLPVVLDWFN FT GRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIAVNNVMAL FT GGIARKNKVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAARVHTDIPAAQQKMASA FT VENTLQPSAEQAQRFEQLYRRYQQWAVSAEQHYLPTAAPVINAPADQAILTH" FT misc_feature complement(83935..84204) FT /gene="araB" FT /locus_tag="ROD_00701" FT /note="HMMPfam hit to PF02782, Carbohydrate kinase, FGGY, FT score 2.4e-07" FT /inference="protein motif:PFAM:PF02782" FT misc_feature complement(84676..85512) FT /gene="araB" FT /locus_tag="ROD_00701" FT /note="HMMPfam hit to PF00370, Carbohydrate kinase, FGGY, FT score 1.2e-05" FT /inference="protein motif:PFAM:PF00370" FT CDS 85857..86735 FT /transl_table=11 FT /gene="araC" FT /locus_tag="ROD_00711" FT /product="arabinose operon regulatory protein" FT /db_xref="GOA:D2TGH0" FT /db_xref="InterPro:IPR003313" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012287" FT /db_xref="InterPro:IPR018060" FT /db_xref="InterPro:IPR018062" FT /db_xref="InterPro:IPR020449" FT /db_xref="UniProtKB/TrEMBL:D2TGH0" FT /protein_id="CBG86851.1" FT /translation="MAEPQNDPLLPGYSFNAHLVAGLTPIDANGYLDFFIDRPLGMKGY FT ILNLTIRGEGVINNQGRQFVCRPGDILLFPPGEIHHYGRHPEASQWYHQWVYFRPRAYW FT QEWLAWPSIFAQTGFFRPDEALQPHFNELFGQIISAGQGEGRYSELLAINLLEQLLLRR FT MEAINASLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGIS FT VLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE FT EKVNDVSVKVS" FT misc_feature 85914..86342 FT /gene="araC" FT /locus_tag="ROD_00711" FT /note="HMMPfam hit to PF02311, AraC protein, FT arabinose-binding/dimerisation, score 1.1e-28" FT /inference="protein motif:PFAM:PF02311" FT misc_feature 86397..86540 FT /gene="araC" FT /locus_tag="ROD_00711" FT /note="HMMPfam hit to PF00165, Helix-turn-helix, AraC type, FT score 2.6e-11" FT /inference="protein motif:PFAM:PF00165" FT misc_feature 86439..86504 FT /note="Predicted helix-turn-helix motif with score FT 1779.000, SD 5.25 at aa 195-216, sequence FT FDIASVAQHVCLSPSRLSHLFR" FT misc_feature 86547..86675 FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT /inference="protein motif:Prosite:PS00041" FT misc_feature 86556..86690 FT /gene="araC" FT /locus_tag="ROD_00711" FT /note="HMMPfam hit to PF00165, Helix-turn-helix, AraC type, FT score 4.8e-12" FT /inference="protein motif:PFAM:PF00165" FT CDS 86821..87588 FT /transl_table=11 FT /locus_tag="ROD_00721" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR015414" FT /db_xref="UniProtKB/TrEMBL:D2TGH1" FT /protein_id="CBG86852.1" FT /translation="MQAFLEHFILQSAMYALIAVVLVAFLESLALVGLILPGTVLMAGL FT GALIGSGELNFWHAWLAGIIGCLLGDWISFWLGWRFKKPLHRWSFLKKHKALLDKTEHA FT LHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAG FT AAIDIPPGMQSGEFKWLLLATAIVLWLGGWLCWRLWRSGKAGTDRLSQYLPKARLLWLA FT PGVLALGVVALVLLIRHPLMPVYVDILLKVVGV" FT misc_feature join(86878..86946,86989..87057,87238..87306,87349..87417, FT 87475..87543) FT /locus_tag="ROD_00721" FT /note="5 probable transmembrane helices predicted for FT ROD00721 by TMHMM2.0 at aa 20-42, 57-79, 140-162, 177-199 FT and 219-241" FT misc_feature 86926..87303 FT /locus_tag="ROD_00721" FT /note="HMMPfam hit to PF09335, SNARE associated Golgi FT protein, score 7.2e-05" FT /inference="protein motif:PFAM:PF09335" FT misc_feature 86989..87021 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(87773..88483) FT /transl_table=11 FT /gene="thiQ" FT /locus_tag="ROD_00731" FT /product="thiamine ABC transport system, ATP-binding FT protein" FT /EC_number="3.6.3.-" FT /db_xref="GOA:D2TGH2" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR005968" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TGH2" FT /protein_id="CBG86853.1" FT /translation="MLKLTDITWLYHHLPMRFTLAVERGEQVAILGPSGAGKSTLLNLI FT AGFLTPARGTLFIAGADHTATPPSRRPVSMLFQENNLFSHLNVAQNIGLGLDPGLKLSA FT AQRDKRQRIAQQMGIDGLMDRLPGELSGGQRQRVALARCLVREQPVLLLDEPFSALDPA FT LRQEMLTLVSDICRNQQLTMLMVSHSVEDAARIARRSVVVADGRIAWQGETQELLSGRA FT SASALLGIKGHTVL" FT misc_feature complement(87866..88411) FT /gene="thiQ" FT /locus_tag="ROD_00731" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 4e-63" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(88052..88096) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(88367..88390) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(88467..90077) FT /transl_table=11 FT /gene="thiP" FT /locus_tag="ROD_00741" FT /product="thiamine ABC transport system, permease protein" FT /db_xref="GOA:D2TGH3" FT /db_xref="InterPro:IPR000515" FT /db_xref="InterPro:IPR005947" FT /db_xref="UniProtKB/TrEMBL:D2TGH3" FT /protein_id="CBG86854.1" FT /translation="MATRRQPLIPGWLLPGLTAAALMTAVALAAFLALWLNAPQGEWRS FT LWQDDYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPV FT LVAVFGILSVYGRQGWLASLWQAFGLEWTFSPYGLQGILLAHVFFNLPMATRLLLQSLE FT NIPGEQRQLAAQLGIRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQ FT ATTIELAIYQALSYDYDPARAAMLALIQMICCLALVLLSQRLSKAIAPGATLIQGWRDP FT DDRPHSRITDALLIVFALLLLLPPLLAVIADGLNRHLPEVLAQPILWQAIWTSLRIALA FT AGLLCVALTMMLLWSSRELRARQRLLAGQTLELSGMLILAMPGIVLATGFFLLLNNSTG FT LPESADGIVLFTNALMAIPYALKVLENPMRDITSRYSMLCQSLGIEGWQRLKVVELRAL FT KRPLAQALAFACVLSIGDFGVVALFGNDNFRTLPFYLYQQIGSYRSQDGAVTALLLLLL FT CFLLFTVIEKLPGRNVKTD" FT misc_feature complement(88473..89087) FT /gene="thiP" FT /locus_tag="ROD_00741" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.00049" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(join(88503..88556,88626..88694,88806..88859, FT 88902..88970,89007..89075,89133..89201,89298..89357, FT 89415..89483,89631..89699,89742..89810,89847..89915, FT 89973..90041)) FT /gene="thiP" FT /locus_tag="ROD_00741" FT /note="12 probable transmembrane helices predicted for FT ROD00741 by TMHMM2.0 at aa 13-35, 55-77, 90-112, 127-149, FT 199-221, 241-260, 293-315, 335-357, 370-392, 407-424, FT 462-484 and 508-525" FT misc_feature complement(89256..89924) FT /gene="thiP" FT /locus_tag="ROD_00741" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 6.2e-07" FT /inference="protein motif:PFAM:PF00528" FT sig_peptide complement(89991..90077) FT /gene="thiP" FT /locus_tag="ROD_00741" FT /note="Signal peptide predicted for ROD00741 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.957 between residues 29 and 30" FT CDS complement(90053..90997) FT /transl_table=11 FT /gene="thiB" FT /locus_tag="ROD_00751" FT /product="thiamine ABC transport system, substrate-binding FT protein precursor" FT /db_xref="GOA:D2TGH4" FT /db_xref="InterPro:IPR005948" FT /db_xref="InterPro:IPR005967" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:D2TGH4" FT /protein_id="CBG86855.1" FT /translation="MPVFAKPVLTVYTYDSFAADWGPGPAVKKAFEADCDCELKYVALE FT DGVSLLNRLRMEGKNSKADVVLGLDNNLLEAATQTGLFAKTPIHTDAVNVPFNWNNDTF FT IPYDYGWFAFVYDKTKLKNPPSSLKELVESPQKWRVIYEDPRTSTPGLGLMLWMKKVYG FT DKAPEAWQKLAAKTVTVTKGWSEAYGLFLKGEGDLVLSYTTSPAYHLIEEKKEQYAAAN FT FSEGHYVQVEVAARTVASKQPELASRFLRFILKPAFQKTIPTGNWMYPVTATPLPAGFE FT QLTKPTTTLQFTSAEVAAQRQAWISEWQRAVSR" FT misc_RNA complement(91068..91189) FT /note="Rfam:RF00059;TPP;Score=57.72;positions 1 to 34" FT CDS complement(91223..92878) FT /transl_table=11 FT /locus_tag="ROD_00761" FT /product="putative substrate-binding protein" FT /db_xref="GOA:D2TGH5" FT /db_xref="InterPro:IPR000914" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TGH5" FT /protein_id="CBG86856.1" FT /translation="MSSGRLQQQFIRLWQCCDGKTQDTTLNELAELLNCSRRHMRTLLN FT TMQARGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKTAVR FT QMLISHLGRSFRQGRHILRVLYYRPLQNLLPGTALRRSETHIARQIFSALTRVNEENGE FT LEADIAHHWQQISPLHWRFFLRPGIHFHHGRELEMEDVIASLRRINDLPLYSHIAHIVS FT PTPWTLDIHLSQPDRWLPLLLAQVPAMILPREWETLNNFASQPIGTGPYAVMRNTRNQL FT KIHAFEDFFGYRALIDEVNVWVLPDICDERTGALTLKGPTDDEKAIESRLEEGCYYLLF FT DARTHRGANQAVREWVSRILSPSNLLYYANEHYQRHWFPAYGLLPRWHHARPGHGEKPA FT GLETLTLTFYRDHIEHQIIARIMSKLLAEHQVKLDIQEIDYDRWHAGDVESDIWLNSAN FT FTLPLDFSLFAYLCEVPLLQHCIPLDWQADAARWRTGEMNLAAWCQQLLASKAIVPLIH FT HWLIIEGQRSMRGLRMNTLGWFDFKSAWFAPPDP" FT misc_feature complement(91403..92392) FT /locus_tag="ROD_00761" FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding protein, family 5, score 1.1e-48" FT /inference="protein motif:PFAM:PF00496" FT misc_feature complement(92744..92809) FT /note="Predicted helix-turn-helix motif with score FT 1534.000, SD 4.41 at aa 24-45, sequence FT TTLNELAELLNCSRRHMRTLLN" FT misc_RNA 92946..93187 FT /note="Rfam:RF00534;SgrS;Score=153.87;positions 1 to 55" FT CDS 93216..94394 FT /transl_table=11 FT /gene="setA" FT /locus_tag="ROD_00781" FT /product="sugar efflux transporter A" FT /db_xref="GOA:D2TGE9" FT /db_xref="InterPro:IPR004750" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TGE9" FT /protein_id="CBG86857.1" FT /translation="MLWIMTMGRRLNGVYAAFMLVAFMMGIAGALQAPTLSLFLSREVG FT AQPFWVGLFYTVNAIAGIGVSLALAKRSDSQGDRRKLIMFCCLMAIGNALLFAFNRHYL FT TLITCGVLLASLANTAMPQLFALAREYADSSAREVVMFSSVMRAQLSLAWVIGPPLAFM FT LALNYGFTVMFSIAAVIFVLSLLLIAFTLPSVARVEQPADVPVTRVSGWQDKNVRMLFI FT ASTLMWTCNTMYIIDMPLWISAELGLPDKLAGILMGTAAGLEIPTMIVAGFYVKRFGKR FT RMMVAAVAAGVLFYAGLIFFHSHSALLILQLFNAVFIGIIAGIGMLWFQDLMPGRAGSA FT TTLFTNSISTGVILAGVIQGAVAQSYGHFAVYWVIAAISLVALVMTGRVKDV" FT sig_peptide 93216..93305 FT /gene="setA" FT /locus_tag="ROD_00781" FT /note="Signal peptide predicted for ROD00781 by SignalP 2.0 FT HMM (Signal peptide probability 0.995) with cleavage site FT probability 0.608 between residues 30 and 31" FT misc_feature join(93246..93314,93357..93425,93459..93512,93525..93593, FT 93663..93731,93741..93809,93873..93941,93969..94037, FT 94062..94121,94134..94202,94239..94307,94320..94376) FT /gene="setA" FT /locus_tag="ROD_00781" FT /note="12 probable transmembrane helices predicted for FT ROD00781 by TMHMM2.0 at aa 11-33, 48-70, 82-99, 104-126, FT 150-172, 176-198, 220-242, 252-274, 283-302, 307-329, FT 342-364 and 369-387" FT misc_feature 93267..94307 FT /gene="setA" FT /locus_tag="ROD_00781" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 6.9e-27" FT /inference="protein motif:PFAM:PF07690" FT CDS complement(94512..95117) FT /transl_table=11 FT /gene="leuD" FT /locus_tag="ROD_00791" FT /product="3-isopropylmalate dehydratase small subunit" FT /EC_number="4.2.1.33" FT /db_xref="GOA:D2TGG1" FT /db_xref="InterPro:IPR000573" FT /db_xref="InterPro:IPR004431" FT /db_xref="InterPro:IPR015928" FT /db_xref="UniProtKB/TrEMBL:D2TGG1" FT /protein_id="CBG86858.1" FT /translation="MAEKFTQHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFN FT DWRFLDDKGEQPNPEFVLNFPEYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAP FT SFADIFYGNSFNNQLLPVKLSDEEVDELFKLVQANPGIQFEVDLEAQVIKAGEKTYSFS FT IDAFRRHCMLNGLDSIGLTLQHEAAIAAYEEKQPAFMR" FT misc_feature complement(94737..95114) FT /gene="leuD" FT /locus_tag="ROD_00791" FT /note="HMMPfam hit to PF00694, Aconitase A/isopropylmalate FT dehydratase small subunit, swivel, score 1.3e-66" FT /inference="protein motif:PFAM:PF00694" FT CDS complement(95128..96528) FT /transl_table=11 FT /gene="leuC" FT /locus_tag="ROD_00801" FT /product="3-isopropylmalate dehydratase large subunit" FT /EC_number="4.2.1.33" FT /db_xref="GOA:D2TGG4" FT /db_xref="InterPro:IPR001030" FT /db_xref="InterPro:IPR004430" FT /db_xref="InterPro:IPR015931" FT /db_xref="InterPro:IPR015932" FT /db_xref="InterPro:IPR015936" FT /db_xref="InterPro:IPR015937" FT /db_xref="InterPro:IPR018136" FT /db_xref="UniProtKB/TrEMBL:D2TGG4" FT /protein_id="CBG86859.1" FT /translation="MAKTLYEKLFDAHVVYEAQNETPLLYIDRHLVHEVTSPQAFDGLR FT AHGRPVRQPGKTFATMDHNVSTQTKDINASGEMARIQMQELIKNCKEFGVELYDLNHPY FT QGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRA FT RTMKIEVNGTAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRALSMEGRMTLCNM FT AIEMGAKAGLVAPDETTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDPDARFDTVVTLQA FT EEIAPQVTWGTNPGQVISVADNIPDPASFTDPVERASAEKALAYMGLKPGVPLTEVAID FT KVFIGSCTNSRIEDLRAAAEVAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAG FT FEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGH FT FADIRSIK" FT misc_feature complement(95158..96519) FT /gene="leuC" FT /locus_tag="ROD_00801" FT /note="HMMPfam hit to PF00330, Aconitase/3-isopropylmalate FT dehydratase large subunit, alpha/beta/alpha, score FT 5.7e-290" FT /inference="protein motif:PFAM:PF00330" FT misc_feature complement(95293..95334) FT /note="PS01244 Aconitase family signature 2." FT /inference="protein motif:Prosite:PS01244" FT misc_feature complement(95464..95514) FT /note="PS00450 Aconitase family signature 1." FT /inference="protein motif:Prosite:PS00450" FT CDS complement(96531..97622) FT /transl_table=11 FT /gene="leuB" FT /locus_tag="ROD_00811" FT /product="3-isopropylmalate dehydrogenase" FT /EC_number="1.1.1.85" FT /db_xref="GOA:D2TGD1" FT /db_xref="InterPro:IPR001804" FT /db_xref="InterPro:IPR004429" FT /db_xref="InterPro:IPR019818" FT /db_xref="InterPro:IPR024084" FT /db_xref="UniProtKB/TrEMBL:D2TGD1" FT /protein_id="CBG86860.1" FT /translation="MSKNYHIAVLPGDGIGPEVMEQALKVMEAVRNRFDMRITTSRYDV FT GGAAIDNHGEPLPKATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKL FT FSNLRPAKLYQGLEAFCPLRADIAASGFDILCVRELTGGIYFGQPKGREGSGQYEKAYD FT TEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQTSILWREIVNEVAKAYPDVELA FT HMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYE FT PAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADEAASAIERAVNRALEEGIRTGDLA FT RGAAAVGTDEMGDIIARYVAEGV" FT misc_feature complement(96558..97607) FT /gene="leuB" FT /locus_tag="ROD_00811" FT /note="HMMPfam hit to PF00180, Isocitrate/isopropylmalate FT dehydrogenase, score 2.1e-227" FT /inference="protein motif:PFAM:PF00180" FT misc_feature complement(96825..96884) FT /note="PS00470 Isocitrate and isopropylmalate FT dehydrogenases signature." FT /inference="protein motif:Prosite:PS00470" FT CDS complement(97622..99193) FT /transl_table=11 FT /gene="leuA" FT /locus_tag="ROD_00821" FT /product="2-isopropylmalate synthase" FT /EC_number="2.3.3.13" FT /db_xref="GOA:D2TGD2" FT /db_xref="InterPro:IPR000891" FT /db_xref="InterPro:IPR002034" FT /db_xref="InterPro:IPR005671" FT /db_xref="InterPro:IPR013709" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:D2TGD2" FT /protein_id="CBG86861.1" FT /translation="MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEV FT GFPVSSPGDFESVQTIARQVKNSRVCALARCVENDIDVAAESLKDADAFRIHTFIATSP FT MHIATKLRSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAINAGA FT KTINIPDTVGYTMPFEFGGIISGLYERVPNIDKAIISVHTHDDLGLGVGNALAAVHAGA FT RQVEGAMNGIGERAGNCSLEEVIMAIKVRQDILNVQTRINHQEIWRTSQLVSQICNMPI FT PANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQVQLNLTSRSGRAAVKHR FT MDEMGYKESEYNLDDLYDAFLKLADKKGQVFDYDLEALAFINKQQEEPEHFRLDYFSVQ FT SGSNAIATASVKLACGDEVKAEAANGNGPVDAIYQAINRITDYDIELVKYSLSAKGHGK FT DALGQVDIVANYNGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKELQRKAQNNE FT KNKETV" FT misc_feature complement(97694..98089) FT /gene="leuA" FT /locus_tag="ROD_00821" FT /note="HMMPfam hit to PF08502, LeuA allosteric FT (dimerisation) domain, score 4e-63" FT /inference="protein motif:PFAM:PF08502" FT misc_feature complement(98357..99157) FT /gene="leuA" FT /locus_tag="ROD_00821" FT /note="HMMPfam hit to PF00682, Pyruvate FT carboxyltransferase, score 2.8e-150" FT /inference="protein motif:PFAM:PF00682" FT misc_feature complement(98558..98599) FT /note="PS00816 Alpha-isopropylmalate and homocitrate FT synthases signature 2." FT /inference="protein motif:Prosite:PS00816" FT misc_feature complement(99110..99160) FT /note="PS00815 Alpha-isopropylmalate and homocitrate FT synthases signature 1." FT /inference="protein motif:Prosite:PS00815" FT misc_RNA complement(99235..99385) FT /note="Rfam:RF00512;Leu_leader;Score=93.91;positions 1 to FT 59" FT CDS complement(99284..99370) FT /transl_table=11 FT /gene="leuL" FT /locus_tag="ROD_00822" FT /product="leu operon leader peptide" FT /db_xref="GOA:D2TGD3" FT /db_xref="InterPro:IPR012570" FT /db_xref="UniProtKB/TrEMBL:D2TGD3" FT /protein_id="CBG86862.1" FT /translation="MIRITRFNGLLLLNAFSVRGRLVNGIQH" FT misc_feature complement(99287..99370) FT /gene="leuL" FT /locus_tag="ROD_00822" FT /note="HMMPfam hit to PF08054, Leucine operon leader FT peptide, score 5.8e-11" FT /inference="protein motif:PFAM:PF08054" FT CDS 100028..100978 FT /transl_table=11 FT /gene="leuO" FT /locus_tag="ROD_00831" FT /product="LysR-family transcriptional regulator" FT /db_xref="GOA:D2TGD4" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TGD4" FT /protein_id="CBG86863.1" FT /translation="MPEVKVDKPDSPLADVEKPQLRMVDLNLLTVFDAVMQEQNITRAA FT HALGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPG FT SGFEPASSERVFNLCVCSPLDNILTSKIYNRVEQIAPNIQVVFKSSLNKNTEHQLRYQE FT TEFVISYEEFRRPEFTSISLFKDEMVLVASRKHPRINGPLLESDVYNEQHAVVSLDRFA FT SFSQPWYDTPDKQCCVAYQGMALISVLNVVSQTQLVAIAPRWLAEEFASTLDLQILPLP FT LKLNSRACYLSWHEAAGRDKGHQWMEELLASVCKR" FT misc_feature 100103..100282 FT /gene="leuO" FT /locus_tag="ROD_00831" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 4.4e-20" FT /inference="protein motif:PFAM:PF00126" FT misc_feature 100142..100207 FT /note="Predicted helix-turn-helix motif with score FT 1896.000, SD 5.64 at aa 39-60, sequence FT QNITRAAHALGMSQPAVSNAVA" FT misc_feature 100145..100237 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature 100352..100972 FT /gene="leuO" FT /locus_tag="ROD_00831" FT /note="HMMPfam hit to PF03466, LysR, substrate-binding, FT score 3.5e-07" FT /inference="protein motif:PFAM:PF03466" FT misc_feature 100670..100699 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT /inference="protein motif:Prosite:PS00339" FT CDS 101305..103029 FT /transl_table=11 FT /gene="ilvI" FT /locus_tag="ROD_00841" FT /product="acetolactate synthase isozyme III large subunit" FT /EC_number="2.2.1.6" FT /db_xref="GOA:D2TGD5" FT /db_xref="InterPro:IPR000399" FT /db_xref="InterPro:IPR011766" FT /db_xref="InterPro:IPR012000" FT /db_xref="InterPro:IPR012001" FT /db_xref="InterPro:IPR012846" FT /db_xref="UniProtKB/TrEMBL:D2TGD5" FT /protein_id="CBG86864.1" FT /translation="MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDH FT VLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVILSGQVA FT TSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPK FT DILNPAKKLPYTWPESVSMRSYNPTTAGHKGQIKRALQTLLSAKNPVAYVGGGAITAGC FT HTQLQQLIETLNLPVVSSLMGLGAFPATHRQALGMLGMHGTYEANMTMHHSDVIFAVGV FT RFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVAADIPIVGDARQVLEQMLELLSQETA FT AQPLDDIRDWWQQIERWRARQCLKYDAQSESIKPQAVIETLWRLTKGDAFVTSDVGQHQ FT MFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPDETVVCVTGDGSIQMNIQEL FT STALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIR FT IARPDELEGQLSEALAQVQSGRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT" FT misc_feature 101314..101826 FT /gene="ilvI" FT /locus_tag="ROD_00841" FT /note="HMMPfam hit to PF02776, Thiamine pyrophosphate FT enzyme, N-terminal TPP binding region, score 2.3e-103" FT /inference="protein motif:PFAM:PF02776" FT misc_feature 101494..101586 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature 101890..102297 FT /gene="ilvI" FT /locus_tag="ROD_00841" FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central region, score 1.6e-67" FT /inference="protein motif:PFAM:PF00205" FT misc_feature 101938..101970 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 102484..102939 FT /gene="ilvI" FT /locus_tag="ROD_00841" FT /note="HMMPfam hit to PF02775, Thiamine pyrophosphate FT enzyme, C-terminal TPP-binding, score 5.1e-80" FT /inference="protein motif:PFAM:PF02775" FT misc_feature 102595..102654 FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT /inference="protein motif:Prosite:PS00187" FT CDS 103032..103523 FT /transl_table=11 FT /gene="ilvH" FT /locus_tag="ROD_00851" FT /product="acetolactate synthase isozyme III small subunit" FT /EC_number="2.2.1.6" FT /db_xref="GOA:D2TGD6" FT /db_xref="InterPro:IPR002912" FT /db_xref="InterPro:IPR004789" FT /db_xref="InterPro:IPR019455" FT /db_xref="UniProtKB/TrEMBL:D2TGD6" FT /protein_id="CBG86865.1" FT /translation="MRRILSVLLENESGALSRVIGLFAQRGYNIESLTVAPTDDPTLSR FT MTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGREEVKRN FT TEIFRGQIIDVTPSLYTVQLAGTSDKLDAFLATLREVAKIVEVARSGVVGLSRGDKIMR FT " FT misc_feature 103032..103145 FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT /inference="protein motif:Prosite:PS00430" FT misc_feature 103038..103238 FT /gene="ilvH" FT /locus_tag="ROD_00851" FT /note="HMMPfam hit to PF01842, Amino acid-binding ACT, FT score 1.6e-13" FT /inference="protein motif:PFAM:PF01842" FT CDS 103781..104785 FT /transl_table=11 FT /gene="fruR" FT /locus_tag="ROD_00861" FT /product="fructose repressor" FT /db_xref="GOA:D2TGD7" FT /db_xref="InterPro:IPR000843" FT /db_xref="InterPro:IPR001761" FT /db_xref="InterPro:IPR010982" FT /db_xref="InterPro:IPR012781" FT /db_xref="UniProtKB/TrEMBL:D2TGD7" FT /protein_id="CBG86866.1" FT /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREH FT NYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPD FT NEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDSFPIVALDRALDREHFTSVVGAD FT QDDAEMLAQELRKFPAETVLYLGALPELSVSFLREQGFRSAWKDDPREVHFLYANSYER FT EAAAQLFAKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDF FT LQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS" FT misc_feature 103781..103858 FT /gene="fruR" FT /locus_tag="ROD_00861" FT /note="HMMPfam hit to PF00356, Bacterial regulatory FT protein, LacI, score 3.6e-10" FT /inference="protein motif:PFAM:PF00356" FT misc_feature 103781..103846 FT /note="Predicted helix-turn-helix motif with score FT 1821.000, SD 5.39 at aa 1-22, sequence FT MKLDEIARLAGVSRTTASYVIN" FT misc_feature 103787..103843 FT /note="PS00356 Bacterial regulatory proteins, lacI family FT signature." FT /inference="protein motif:Prosite:PS00356" FT misc_feature 103961..104767 FT /gene="fruR" FT /locus_tag="ROD_00861" FT /note="HMMPfam hit to PF00532, Periplasmic binding FT protein/LacI transcriptional regulator, score 5.7e-07" FT /inference="protein motif:PFAM:PF00532" FT CDS 105451..105858 FT /transl_table=11 FT /gene="mraZ" FT /locus_tag="ROD_00871" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR003444" FT /db_xref="InterPro:IPR020603" FT /db_xref="UniProtKB/TrEMBL:D2TGD8" FT /protein_id="CBG86867.1" FT /translation="MPTRYREQLIESATGQMVCTIDIHHPCLLLYPLPEWEIIEQKLSR FT LSSMNPVERRVQRLLLGHASECQMDSAGRLLIAPVLRQHAGLTKEVMLVGQFNKFELWD FT ETTWYQQVKEDIDAEQSATETLSERLQDLSL" FT misc_feature 105451..105627 FT /gene="mraZ" FT /locus_tag="ROD_00871" FT /note="HMMPfam hit to PF02381, MraZ, score 4.1e-09" FT /inference="protein motif:PFAM:PF02381" FT misc_feature 105628..105837 FT /gene="mraZ" FT /locus_tag="ROD_00871" FT /note="HMMPfam hit to PF02381, MraZ, score 8.8e-24" FT /inference="protein motif:PFAM:PF02381" FT CDS 105860..106801 FT /transl_table=11 FT /gene="mraW" FT /locus_tag="ROD_00881" FT /product="S-adenosyl-L-methionine-dependent FT methyltransferase" FT /EC_number="2.1.1.-" FT /note="unknown EC_number=2.1.1.-." FT /db_xref="GOA:D2TGD9" FT /db_xref="InterPro:IPR002903" FT /db_xref="InterPro:IPR023397" FT /db_xref="UniProtKB/TrEMBL:D2TGD9" FT /protein_id="CBG86868.1" FT /translation="MMENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQL FT GEEGRLLAIDRDPQAIAVAQTINDPRFSIIHGPFSALAEYVAERNLTGRIDGILLDLGV FT SSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQSAEEADIAWVLKTFGEERFAKR FT IARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQA FT LKSSLSVLAPGGRLSIISFHSLEDRIVKRFMREQSRGPKVPAGIPMTEEQLSKLGGREL FT RALGKLMPGEKEVAENPRARSSVLRIAERTNA" FT misc_feature 105869..106792 FT /gene="mraW" FT /locus_tag="ROD_00881" FT /note="HMMPfam hit to PF01795, Bacterial methyltransferase, FT score 1.2e-191" FT /inference="protein motif:PFAM:PF01795" FT CDS 106798..107163 FT /transl_table=11 FT /gene="ftsL" FT /locus_tag="ROD_00891" FT /product="cell division protein FtsL" FT /db_xref="GOA:D2TGE0" FT /db_xref="InterPro:IPR007082" FT /db_xref="InterPro:IPR011922" FT /db_xref="UniProtKB/TrEMBL:D2TGE0" FT /protein_id="CBG86869.1" FT /translation="MISRVTEALSKVKGSIGSNERHALPGVIGDDLLRFGKLPLCLFIC FT IIVTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIATEK FT LQMQHVDPSQENIVVQK" FT misc_feature 106867..107157 FT /gene="ftsL" FT /locus_tag="ROD_00891" FT /note="HMMPfam hit to PF04999, Cell division protein FtsL, FT score 1.3e-65" FT /inference="protein motif:PFAM:PF04999" FT misc_feature 106900..106968 FT /gene="ftsL" FT /locus_tag="ROD_00891" FT /note="1 probable transmembrane helix predicted for FT ROD00891 by TMHMM2.0 at aa 35-57" FT CDS 107179..108936 FT /transl_table=11 FT /gene="ftsI" FT /locus_tag="ROD_00901" FT /product="peptidoglycan synthetase (penicillin-binding FT protein 3)" FT /EC_number="2.4.1.129" FT /db_xref="GOA:D2TGE1" FT /db_xref="InterPro:IPR001460" FT /db_xref="InterPro:IPR005311" FT /db_xref="InterPro:IPR012338" FT /db_xref="UniProtKB/TrEMBL:D2TGE1" FT /protein_id="CBG86870.1" FT /translation="MKAAAKPKRQEEQANFISWRFALLCGCILLALVFLLGRVAWLQII FT APDMLVRQGDMRSLRVQEVATSRGMITDRSGRPLAVSVPVKAIWADPKEVHEAGGVRVG FT DRWKALSTALNIPLDQLAARINANPKGRFIYLARQLNPDMADYIKKLKLPGIHLREESR FT RYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTD FT SQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPN FT NLSGTPKDAMRNRTITDVFEPGSTVKPMVVMTALQRGIVNENTVLNTVPYRINGHEIKD FT VARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSGLYP FT QKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGVYRPLSITKVDPPVPGERIFPE FT SIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYINKYIAYTAGVAP FT ASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPDALATGEKSEFVIN FT QGEGTGGRS" FT sig_peptide 107179..107304 FT /gene="ftsI" FT /locus_tag="ROD_00901" FT /note="Signal peptide predicted for ROD00901 by SignalP 2.0 FT HMM (Signal peptide probability 0.749) with cleavage site FT probability 0.354 between residues 42 and 43" FT misc_feature 107236..107304 FT /gene="ftsI" FT /locus_tag="ROD_00901" FT /note="1 probable transmembrane helix predicted for FT ROD00901 by TMHMM2.0 at aa 20-42" FT misc_feature 107365..107835 FT /gene="ftsI" FT /locus_tag="ROD_00901" FT /note="HMMPfam hit to PF03717, Penicillin-binding protein, FT dimerisation domain, score 9.8e-67" FT /inference="protein motif:PFAM:PF03717" FT misc_feature 107947..108834 FT /gene="ftsI" FT /locus_tag="ROD_00901" FT /note="HMMPfam hit to PF00905, Penicillin-binding protein, FT transpeptidase, score 9.1e-120" FT /inference="protein motif:PFAM:PF00905" FT CDS 108923..110410 FT /transl_table=11 FT /gene="murE" FT /locus_tag="ROD_00911" FT /product="UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia FT minopimelate ligase" FT /EC_number="6.3.2.13" FT /db_xref="GOA:D2TGE2" FT /db_xref="InterPro:IPR000713" FT /db_xref="InterPro:IPR004101" FT /db_xref="InterPro:IPR005761" FT /db_xref="InterPro:IPR013221" FT /db_xref="UniProtKB/TrEMBL:D2TGE2" FT /protein_id="CBG86871.1" FT /translation="MADRNLRDLLAPWVTGLPARELREMTLDSRVAASGDLFVAVKGHQ FT ADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHE FT PSENMRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVTPTENTTGSAV FT DVQHELAGLVAQGATFGAMEVSSHGLIQHRVAALKFAATVFTNLSRDHLDYHGDMEHYE FT AAKWLLFSTHHYGQAIVNADDEVGRRWLTNLPDAVAVSMEDHINPNCHGRWLKAVAVDY FT HDSGATIRFTSSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTATRLQPVC FT GRMEVFSAPGKTTVVVDYAHTPDALEKALQAARLHCGGQLWCVFGCGGDRDKGKRPLMG FT AIAEQYADVVVVTDDNPRTEEPRAIIDDILAGMLDAGRARVMEGRAEAVTNAIMQAKEN FT DVVLVAGKGHEDYQIIGTQRLDYSDRVTAARLLGVIA" FT misc_feature 108983..109228 FT /gene="murE" FT /locus_tag="ROD_00911" FT /note="HMMPfam hit to PF01225, Mur ligase, N-terminal, FT score 6.6e-17" FT /inference="protein motif:PFAM:PF01225" FT misc_feature 109256..109879 FT /gene="murE" FT /locus_tag="ROD_00911" FT /note="HMMPfam hit to PF08245, Mur ligase, central, score FT 4.4e-74" FT /inference="protein motif:PFAM:PF08245" FT misc_feature 109937..110197 FT /gene="murE" FT /locus_tag="ROD_00911" FT /note="HMMPfam hit to PF02875, Mur ligase, C-terminal, FT score 1.9e-39" FT /inference="protein motif:PFAM:PF02875" FT CDS 110407..111765 FT /transl_table=11 FT /gene="murF" FT /locus_tag="ROD_00921" FT /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala FT nine ligase" FT /EC_number="6.3.2.10" FT /db_xref="GOA:D2TGE3" FT /db_xref="InterPro:IPR000713" FT /db_xref="InterPro:IPR004101" FT /db_xref="InterPro:IPR005863" FT /db_xref="InterPro:IPR013221" FT /db_xref="UniProtKB/TrEMBL:D2TGE3" FT /protein_id="CBG86872.1" FT /translation="MISVTLSQLAGILGGELKGDDLTLDAVTTDTRKLTPGCLFVALKG FT ERFDAHDFADKAKAGGAGALLVSRPLDCDLPQLIVKDTRLAFGELAAWVRAQVPARVVA FT LTGSSGKTSVKEMAAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHDFAVIELGANH FT QGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYSGLPENGIAIMNADNN FT DWLNWQSVIGDRKVWRFSANAADSDFTATNVHVTSHGTEFTLQTPVGSIDVLLPLPGRH FT NIANALAAASLSMAAGAPLAAIKAGLANLKAVPGRLFPVQLAENQLLLDDSYNANVGSM FT TAAVQVLAEMPGYRVLVVGDMAELGAESEACHLQVGNAAKAAGIDRVLSTGKLSQAISE FT ASGVGEHFADKTALIARLKALVEEQQMITILVKGSRSAAMEEVVRALQEKGTC" FT misc_feature 110473..110691 FT /gene="murF" FT /locus_tag="ROD_00921" FT /note="HMMPfam hit to PF01225, Mur ligase, N-terminal, FT score 1.2e-22" FT /inference="protein motif:PFAM:PF01225" FT misc_feature 110713..111285 FT /gene="murF" FT /locus_tag="ROD_00921" FT /note="HMMPfam hit to PF08245, Mur ligase, central, score FT 4.3e-70" FT /inference="protein motif:PFAM:PF08245" FT misc_feature 111343..111597 FT /gene="murF" FT /locus_tag="ROD_00921" FT /note="HMMPfam hit to PF02875, Mur ligase, C-terminal, FT score 1.9e-19" FT /inference="protein motif:PFAM:PF02875" FT CDS 111759..112841 FT /transl_table=11 FT /gene="mraY" FT /locus_tag="ROD_00931" FT /product="phospho-N-acetylmuramoyl-pentapeptide-transfera FT se" FT /EC_number="2.7.8.13" FT /db_xref="GOA:D2TGE4" FT /db_xref="InterPro:IPR000715" FT /db_xref="InterPro:IPR003524" FT /db_xref="InterPro:IPR018480" FT /db_xref="UniProtKB/TrEMBL:D2TGE4" FT /protein_id="CBG86873.1" FT /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRMI FT ARLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVLVV FT LIGYGIIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATELVVP FT FFKDVMPQLGLFYVLLAYFVIVGTGNAVNLTDGLDGLAIMPTVFVAAGFALVAWATGNM FT NFANYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGALGIIA FT VLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWPEPRVIV FT RFWIISLMLVLIGLATLKVR" FT misc_feature join(111801..111869,111981..112034,112047..112100, FT 112158..112211,112269..112337,112356..112415, FT 112458..112526,112545..112613,112623..112691, FT 112770..112829) FT /gene="mraY" FT /locus_tag="ROD_00931" FT /note="10 probable transmembrane helices predicted for FT ROD00931 by TMHMM2.0 at aa 15-37, 75-92, 97-114, 134-151, FT 171-193, 200-219, 234-256, 263-285, 289-311 and 338-357" FT misc_feature 112050..112628 FT /gene="mraY" FT /locus_tag="ROD_00931" FT /note="HMMPfam hit to PF00953, Glycosyl transferase, family FT 4, score 2.1e-87" FT /inference="protein motif:PFAM:PF00953" FT CDS 112844..114160 FT /transl_table=11 FT /gene="murD" FT /locus_tag="ROD_00941" FT /product="UDP-N-acetylmuramoylalanine--D-glutamate ligase" FT /EC_number="6.3.2.9" FT /db_xref="GOA:D2TGE5" FT /db_xref="InterPro:IPR004101" FT /db_xref="InterPro:IPR005762" FT /db_xref="InterPro:IPR013221" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TGE5" FT /protein_id="CBG86874.1" FT /translation="MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRATPPGLD FT KLPEAVERHIGSLNEDWLLAADLIVASPGIALAHPVLSAAADAGVEIVGDIELFCREAQ FT APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAGRELYVLELSSFQ FT LETTYSLQAEAATILNVTEDHMDRYPFGLQQYRAAKLRVYENASVCVVNADDALTMPVR FT GADARCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALAD FT AAGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVGSTEAALNGLQVDGTL FT HLLLGGDGKSADFSPLGRYLTGDRVRLYCFGRDGAQLAALRPEIAEQTQTMEEAMRLIA FT PRVKPGDMVLLSPACASLDQFKNFEQRGDLFTRLAKELG" FT misc_feature 112868..112936 FT /gene="murD" FT /locus_tag="ROD_00941" FT /note="1 probable transmembrane helix predicted for FT ROD00941 by TMHMM2.0 at aa 9-31" FT misc_feature 112874..112906 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 113165..113683 FT /gene="murD" FT /locus_tag="ROD_00941" FT /note="HMMPfam hit to PF08245, Mur ligase, central, score FT 1.6e-60" FT /inference="protein motif:PFAM:PF08245" FT misc_feature 113177..113224 FT /note="PS00012 Phosphopantetheine attachment site." FT /inference="protein motif:Prosite:PS00012" FT misc_feature 113741..113983 FT /gene="murD" FT /locus_tag="ROD_00941" FT /note="HMMPfam hit to PF02875, Mur ligase, C-terminal, FT score 1.2e-12" FT /inference="protein motif:PFAM:PF02875" FT CDS 114160..115404 FT /transl_table=11 FT /gene="ftsW" FT /locus_tag="ROD_00951" FT /product="cell division protein FtsW" FT /db_xref="GOA:D2TGM6" FT /db_xref="InterPro:IPR001182" FT /db_xref="InterPro:IPR013437" FT /db_xref="InterPro:IPR018365" FT /db_xref="UniProtKB/TrEMBL:D2TGM6" FT /protein_id="CBG86875.1" FT /translation="MRLSLPRLRMPRLPGVGLLGGILAALKGWVMGSRDKDTDSLVMYD FT RMLLWLTFGLAAIGFVMVTSASMPVGQRLAGDPFLFAKRDALYILLAFCLAMITLRLPM FT EFWQRYSTTMLIASIVMLLIVLVVGSSVNGASRWIAIGPLRIQPAEFTKLSLFCYLANY FT LVRKVDEVRNNLRGFLKPMGVILVLAILLLAQPDLGTVVVLFVTTLAMLFLAGAKLWQF FT IAIIGMGISAVVLLILAEPYRIRRVTSFWNPWEDPFGSGYQLTQSLMAFGRGEMWGQGL FT GNSVQKLEYLPEAHTDFIFAIIGEELGYIGVVLALLMVFFVAFRAMSIGRKALQIDQRF FT SGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMMLLRIDY FT ETRLEKAQAFTRGSR" FT misc_feature join(114196..114255,114298..114357,114418..114471, FT 114499..114567,114682..114741,114751..114810, FT 114823..114891,115078..115146,115180..115248, FT 115276..115344) FT /gene="ftsW" FT /locus_tag="ROD_00951" FT /note="10 probable transmembrane helices predicted for FT ROD00951 by TMHMM2.0 at aa 13-32, 47-66, 87-104, 114-136, FT 175-194, 198-217, 222-244, 307-329, 341-363 and 373-395" FT misc_feature 114295..115368 FT /gene="ftsW" FT /locus_tag="ROD_00951" FT /note="HMMPfam hit to PF01098, Cell cycle protein, score FT 6.7e-186" FT /inference="protein motif:PFAM:PF01098" FT misc_feature 115234..115308 FT /note="PS00428 Cell cycle proteins ftsW / rodA / spoVE FT signature." FT /inference="protein motif:Prosite:PS00428" FT CDS 115401..116468 FT /transl_table=11 FT /gene="murG" FT /locus_tag="ROD_00961" FT /product="UDP-N-acetylglucosamine--N-acetylmuramyl-(penta FT peptide) pyrophosphoryl-undecaprenol N-acetylglucosamine FT transferase" FT /EC_number="2.4.1.227" FT /db_xref="GOA:D2TGM7" FT /db_xref="InterPro:IPR004276" FT /db_xref="InterPro:IPR006009" FT /db_xref="InterPro:IPR007235" FT /db_xref="UniProtKB/TrEMBL:D2TGM7" FT /protein_id="CBG86876.1" FT /translation="MSGQAKRLMVMAGGTGGHVFPGLAVAHHLMAQGWEVRWLGTADRM FT EADLVPKHGIEIDFIRISGLRGKGVKALLAAPLRIFNAWRQARAIMKAFKPDVVLGMGG FT YVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATRVMQAFPGAFPKAEVVGNPVR FT TDVLALPLPQARLSGREGPIRVLVVGGSQGARVLNQTLPQAAAKLGSAVTIWHQSGKGA FT QQAVEQAYADAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPF FT QHKDRQQYWNALPLEQAGAARILEQPQFTVDAVVSTLSGWNREVLLEMAQRARAAAIPD FT ATERVANEVSLVARA" FT sig_peptide 115401..115478 FT /gene="murG" FT /locus_tag="ROD_00961" FT /note="Signal peptide predicted for ROD00961 by SignalP 2.0 FT HMM (Signal peptide probability 0.614) with cleavage site FT probability 0.544 between residues 26 and 27" FT misc_feature 115422..115838 FT /gene="murG" FT /locus_tag="ROD_00961" FT /note="HMMPfam hit to PF03033, Glycosyl transferase, family FT 28, score 2.7e-54" FT /inference="protein motif:PFAM:PF03033" FT misc_feature 115950..116435 FT /gene="murG" FT /locus_tag="ROD_00961" FT /note="HMMPfam hit to PF04101, Glycosyltransferase 28, FT C-terminal, score 1.3e-53" FT /inference="protein motif:PFAM:PF04101" FT CDS 116526..118001 FT /transl_table=11 FT /gene="murC" FT /locus_tag="ROD_00971" FT /product="UDP-N-acetylmuramate:alanine ligase" FT /EC_number="6.3.2.8" FT /db_xref="GOA:D2TGM8" FT /db_xref="InterPro:IPR000713" FT /db_xref="InterPro:IPR004101" FT /db_xref="InterPro:IPR005758" FT /db_xref="InterPro:IPR013221" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TGM8" FT /protein_id="CBG86877.1" FT /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGYQ FT ISGSDLAPNPVTQQLTNLGATIYFNHRPENVLDASVVVVSSAISADNPEIVAAHEARIP FT VIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHA FT RLGHSRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLP FT FYGRAVMCVDDPVIRELLPRVGRQITTYGFSDDADVRVEDYQQIGPQGHFSLLRQGMPE FT LRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLAPVN FT GKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKHLVMLFQPHRFTRTRDLYDDFANVLT FT QVDALLMLDVYAAGEAPIPGADSRSLCRTIRGRGKIDPILVSDPAQVAEMLAPVLTGND FT LILVQGAGNIGKIARSLAEIKLKPQIQESEQHG" FT misc_feature 116586..116885 FT /gene="murC" FT /locus_tag="ROD_00971" FT /note="HMMPfam hit to PF01225, Mur ligase, N-terminal, FT score 1.2e-47" FT /inference="protein motif:PFAM:PF01225" FT misc_feature 116889..117437 FT /gene="murC" FT /locus_tag="ROD_00971" FT /note="HMMPfam hit to PF08245, Mur ligase, central, score FT 2.1e-34" FT /inference="protein motif:PFAM:PF08245" FT misc_feature 117495..117785 FT /gene="murC" FT /locus_tag="ROD_00971" FT /note="HMMPfam hit to PF02875, Mur ligase, C-terminal, FT score 4.5e-22" FT /inference="protein motif:PFAM:PF02875" FT CDS 117994..118914 FT /transl_table=11 FT /gene="ddlB" FT /locus_tag="ROD_00981" FT /product="D-alanine--D-alanine ligase B" FT /EC_number="6.3.2.4" FT /db_xref="GOA:D2TGM9" FT /db_xref="InterPro:IPR000291" FT /db_xref="InterPro:IPR005905" FT /db_xref="InterPro:IPR011095" FT /db_xref="InterPro:IPR011127" FT /db_xref="InterPro:IPR011761" FT /db_xref="InterPro:IPR013815" FT /db_xref="InterPro:IPR013816" FT /db_xref="InterPro:IPR013817" FT /db_xref="InterPro:IPR016185" FT /db_xref="UniProtKB/TrEMBL:D2TGM9" FT /protein_id="CBG86878.1" FT /translation="MADKIAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEV FT DVTQLKAMGFQKVFIALHGRGGEDGTLQGLLELIGLPYTGSGVMASAISMDKLRSKLLW FT QGAGLPVAPWVALTRAQFEKGLSEELVTQISALGLPLIVKPSREGSSVGMSKVAEYDAL FT QSALALAFQHDEEVLIEKWLSGPEFTVAILGEEILPTIRIQPAGTFYDYEAKYLSDETQ FT YFCPAGLETAQEALLRDLVRKAWSTLGCKGWGRIDAMLDSDGQFYLLEANTSPGMTSHS FT LVPMAAREKGLSFSQLVVRILELAD" FT misc_feature 118000..118278 FT /gene="ddlB" FT /locus_tag="ROD_00981" FT /note="HMMPfam hit to PF01820, D-alanine--D-alanine ligase, FT N-terminal, score 5.6e-55" FT /inference="protein motif:PFAM:PF01820" FT misc_feature 118180..118215 FT /note="PS00843 D-alanine--D-alanine ligase signature 1." FT /inference="protein motif:Prosite:PS00843" FT misc_feature 118234..118251 FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT /inference="protein motif:Prosite:PS00343" FT misc_feature 118279..118902 FT /gene="ddlB" FT /locus_tag="ROD_00981" FT /note="HMMPfam hit to PF07478, D-alanine--D-alanine ligase, FT C-terminal, score 5.4e-109" FT /inference="protein motif:PFAM:PF07478" FT misc_feature 118735..118821 FT /note="PS00844 D-alanine--D-alanine ligase signature 2." FT /inference="protein motif:Prosite:PS00844" FT CDS 118916..119746 FT /transl_table=11 FT /gene="ftsQ" FT /locus_tag="ROD_00991" FT /product="cell division protein FtsQ" FT /db_xref="GOA:D2TGN0" FT /db_xref="InterPro:IPR005548" FT /db_xref="InterPro:IPR013685" FT /db_xref="UniProtKB/TrEMBL:D2TGN0" FT /protein_id="CBG86879.1" FT /translation="MSQAALNTRNSDEEVSSSRRNNGTRLAGILFLLTVLCTVLVSGWV FT VLGWMEDAQRLPLSKLVLTGERHYTKNDDIRQSILALGAPGTFMTQDVNIIQSQIERLP FT WIKQASVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNAFSVPSDRTSKQILPMLYGP FT EGSASEVLQGYREMGQVLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLAR FT FVELYPVLQQQAQTEGKRISYVDLRYDSGAAVGWEPLPPEETNQQQNQAQAEQQ" FT misc_feature 118991..119059 FT /gene="ftsQ" FT /locus_tag="ROD_00991" FT /note="1 probable transmembrane helix predicted for FT ROD00991 by TMHMM2.0 at aa 26-48" FT misc_feature 119081..119293 FT /gene="ftsQ" FT /locus_tag="ROD_00991" FT /note="HMMPfam hit to PF08478, FT Polypeptide-transport-associated, FtsQ-type, score 9.8e-25" FT /inference="protein motif:PFAM:PF08478" FT misc_feature 119300..119656 FT /gene="ftsQ" FT /locus_tag="ROD_00991" FT /note="HMMPfam hit to PF03799, Cell division protein FtsQ, FT score 1.8e-35" FT /inference="protein motif:PFAM:PF03799" FT CDS 119743..121005 FT /transl_table=11 FT /gene="ftsA" FT /locus_tag="ROD_01001" FT /product="cell division protein FtsA" FT /db_xref="GOA:D2TGN1" FT /db_xref="InterPro:IPR001023" FT /db_xref="InterPro:IPR003494" FT /db_xref="InterPro:IPR020823" FT /db_xref="UniProtKB/TrEMBL:D2TGN1" FT /protein_id="CBG86880.1" FT /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMINIIGVGSCPSRG FT MDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEV FT TQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITC FT HNDMAKNIVKAVERCGLKVDQLIFAGLAASYSVLTEDERELGVCVVDIGGGTMDIAVYT FT GGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVG FT GRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQ FT IEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLSGEADVEK FT RVTASVGSWIKRLNSWLRKEF" FT misc_feature 119770..120330 FT /gene="ftsA" FT /locus_tag="ROD_01001" FT /note="HMMPfam hit to PF02491, Cell division protein FtsA, FT score 3e-79" FT /inference="protein motif:PFAM:PF02491" FT misc_feature 119833..119865 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 120358..120888 FT /gene="ftsA" FT /locus_tag="ROD_01001" FT /note="HMMPfam hit to PF02491, Cell division protein FtsA, FT score 2.1e-79" FT /inference="protein motif:PFAM:PF02491" FT CDS 121122..122273 FT /transl_table=11 FT /gene="ftsZ" FT /locus_tag="ROD_01011" FT /product="cell division protein FtsZ" FT /db_xref="GOA:D2TGN2" FT /db_xref="InterPro:IPR000158" FT /db_xref="InterPro:IPR003008" FT /db_xref="InterPro:IPR008280" FT /db_xref="InterPro:IPR018316" FT /db_xref="InterPro:IPR020805" FT /db_xref="InterPro:IPR024757" FT /db_xref="UniProtKB/TrEMBL:D2TGN2" FT /protein_id="CBG86881.1" FT /translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNTD FT AQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDREALRAALDGADMVFIAAGM FT GGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITI FT PNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMSEMGY FT AMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFETVGNT FT IRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQPVMDRYQ FT QHGMAPLTQEQKPVAKVVNDNTPQTAKEPDYLDIPAFLRKQAD" FT misc_feature 121152..121733 FT /gene="ftsZ" FT /locus_tag="ROD_01011" FT /note="HMMPfam hit to PF00091, Tubulin/FtsZ, GTPase, score FT 1.8e-93" FT /inference="protein motif:PFAM:PF00091" FT misc_feature 121248..121352 FT /note="PS01134 FtsZ protein signature 1." FT /inference="protein motif:Prosite:PS01134" FT misc_feature 121407..121472 FT /note="PS01135 FtsZ protein signature 2." FT /inference="protein motif:Prosite:PS01135" FT misc_feature 121737..122117 FT /gene="ftsZ" FT /locus_tag="ROD_01011" FT /note="HMMPfam hit to PF03953, Tubulin/FtsZ, C-terminal, FT score 2.1e-44" FT /inference="protein motif:PFAM:PF03953" FT CDS 122374..123291 FT /transl_table=11 FT /gene="lpxC" FT /locus_tag="ROD_01021" FT /product="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine FT deacetylase" FT /EC_number="3.5.1.-" FT /db_xref="GOA:D2TGN3" FT /db_xref="InterPro:IPR004463" FT /db_xref="InterPro:IPR011334" FT /db_xref="InterPro:IPR015870" FT /db_xref="InterPro:IPR020568" FT /db_xref="UniProtKB/TrEMBL:D2TGN3" FT /protein_id="CBG86882.1" FT /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLN FT PPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVDAPEIPIM FT DGSAAPFVYLLLDAGIEELSSAKKFVRIKETVRVEDGDKWAEFKPYNGFTLDFTIDFNH FT PAIDSSTQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYR FT VLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEA FT WEFVTFEDDAELPLAFKAPSTVLA" FT misc_feature 122377..123213 FT /gene="lpxC" FT /locus_tag="ROD_01021" FT /note="HMMPfam hit to PF03331, UDP-3-O-acyl FT N-acetylglucosamine deacetylase, score 2.9e-193" FT /inference="protein motif:PFAM:PF03331" FT CDS 123516..124073 FT /transl_table=11 FT /gene="secM" FT /locus_tag="ROD_01031" FT /product="secretion monitor precursor" FT /db_xref="GOA:D2TGN4" FT /db_xref="InterPro:IPR009502" FT /db_xref="UniProtKB/TrEMBL:D2TGN4" FT /protein_id="CBG86883.1" FT /translation="MCAKKRFEQHDWDGFNVSGILTRWRQLGRRYFWPHLLLGMVAASL FT GLPALSNAAEPNNAPAKATASSHDQHIRVNFSQLALLEASNRRPNFTVDYWHQHAIRTV FT IRHLSFAMAPQALPVAEETSPLQAHHLALLNTLSAMLTQEGSPAAMTPRVSYSHFAPLA FT AFTVPVWISQAQGIRAGPQRLS" FT sig_peptide 123516..123674 FT /gene="secM" FT /locus_tag="ROD_01031" FT /note="Signal peptide predicted for ROD01031 by SignalP 2.0 FT HMM (Signal peptide probability 0.863) with cleavage site FT probability 0.854 between residues 53 and 54" FT misc_feature 123606..123674 FT /gene="secM" FT /locus_tag="ROD_01031" FT /note="1 probable transmembrane helix predicted for FT ROD01031 by TMHMM2.0 at aa 31-53" FT misc_feature 123633..124070 FT /gene="secM" FT /locus_tag="ROD_01031" FT /note="HMMPfam hit to PF06558, Secretion monitor, score FT 5.9e-95" FT /inference="protein motif:PFAM:PF06558" FT CDS 124135..126840 FT /transl_table=11 FT /gene="secA" FT /locus_tag="ROD_01041" FT /product="preprotein translocase SecA subunit" FT /db_xref="GOA:D2TGN5" FT /db_xref="InterPro:IPR000185" FT /db_xref="InterPro:IPR004027" FT /db_xref="InterPro:IPR011115" FT /db_xref="InterPro:IPR011116" FT /db_xref="InterPro:IPR011130" FT /db_xref="InterPro:IPR014018" FT /db_xref="InterPro:IPR020937" FT /db_xref="UniProtKB/TrEMBL:D2TGN5" FT /protein_id="CBG86884.1" FT /translation="MLIKMLTKVFGSRNDRTLRRMRKVVGVINAMEPEMEKLSDEELKA FT KTAEFRARLEQGASVESLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNDRCIAEMRT FT GEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGMTVGINLPGMPA FT PAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTP FT LIISGPAEDSSEMYKKVNKIIPHLVRQEKEDSDTFQGEGHFSVDEKARQVNLTERGLVL FT IEELLVKEGIMDEGESLYSPGNIMLMHHVTAALRAHVLFTRDVDYIVKDGEVIIVDEHT FT GRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAF FT EFSSIYKLDTVVVPTNRPMIRKDMPDLVYMTEAEKIQAIIEDIKERTANGQPVLVGTIS FT IEKSEVVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPSAVTIATNMAGRGTDIMLGG FT SWQAEIAALENPTPEQIAQIKADWQVRHDAVLAAGGLHIIGTERHESRRIDNQLRGRSG FT RQGDPGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVE FT SRNFDIRKQLLEYDDVANDQRRAIYTQRNELLDVSDVSETINSIREDVFKATIDAYIPP FT QSLEEMWDIPGLQERLKNDFDLDMPIAEWLDKEPELHEETLRERILSQAIEVYQRKEEV FT VGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFAMFA FT AMLESLKYEVISTLSKVQVRMPEEVEAMELQRREEAERLAQMQQLSHQDDHAAAAADLA FT AQTGERKVGRNDPCPCGSGKKYKQCHGRLS" FT misc_feature 124150..125340 FT /gene="secA" FT /locus_tag="ROD_01041" FT /note="HMMPfam hit to PF07517, SecA DEAD-like, score FT 1e-216" FT /inference="protein motif:PFAM:PF07517" FT misc_feature 124816..125208 FT /gene="secA" FT /locus_tag="ROD_01041" FT /note="HMMPfam hit to PF01043, SecA preprotein FT cross-linking region, score 1.9e-83" FT /inference="protein motif:PFAM:PF01043" FT misc_feature 125632..125679 FT /note="PS01312 Protein secA signatures." FT /inference="protein motif:Prosite:PS01312" FT misc_feature 125686..125751 FT /note="Predicted helix-turn-helix motif with score FT 1222.000, SD 3.35 at aa 518-539, sequence FT SWQAEIAALENPTPEQIAQIKA" FT misc_feature 125983..126627 FT /gene="secA" FT /locus_tag="ROD_01041" FT /note="HMMPfam hit to PF07516, SecA Wing and Scaffold, FT score 5.2e-124" FT /inference="protein motif:PFAM:PF07516" FT misc_feature 126775..126837 FT /gene="secA" FT /locus_tag="ROD_01041" FT /note="HMMPfam hit to PF02810, SEC-C motif, score 2.8e-11" FT /inference="protein motif:PFAM:PF02810" FT CDS 126947..127345 FT /transl_table=11 FT /gene="mutT" FT /locus_tag="ROD_01051" FT /product="mutator protein FT (7,8-dihydro-8-oxoguanine-triphosphatase)" FT /EC_number="3.6.1.-" FT /db_xref="GOA:D2TGN6" FT /db_xref="InterPro:IPR000086" FT /db_xref="InterPro:IPR003561" FT /db_xref="InterPro:IPR015797" FT /db_xref="InterPro:IPR020084" FT /db_xref="InterPro:IPR020476" FT /db_xref="UniProtKB/TrEMBL:D2TGN6" FT /protein_id="CBG86885.1" FT /translation="MKTLQIAVGIIRNPQNEIFITRRAADAHMANKLEFPGGKIEAGET FT PEQTLSRELQEEVGITPANATLFEKLEYQFPDRHITLWFWLVESWQGEPWGKEGQSGNW FT IAADALSADDFPPANEPVIAKLKHASLA" FT misc_feature 126956..127333 FT /gene="mutT" FT /locus_tag="ROD_01051" FT /note="HMMPfam hit to PF00293, NUDIX hydrolase, core, score FT 3.8e-30" FT /inference="protein motif:PFAM:PF00293" FT misc_feature 127058..127117 FT /note="PS00893 mutT domain signature." FT /inference="protein motif:Prosite:PS00893" FT CDS complement(127445..127639) FT /transl_table=11 FT /locus_tag="ROD_01061" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TGN7" FT /db_xref="InterPro:IPR005584" FT /db_xref="InterPro:IPR013088" FT /db_xref="UniProtKB/TrEMBL:D2TGN7" FT /protein_id="CBG86886.1" FT /translation="MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEK FT RIPSSGDLSDSDDWSEEKE" FT misc_feature complement(127448..127627) FT /locus_tag="ROD_01061" FT /note="HMMPfam hit to PF03884, Protein of unknown function FT DUF329, score 7.8e-42" FT /inference="protein motif:PFAM:PF03884" FT CDS complement(127649..128392) FT /transl_table=11 FT /locus_tag="ROD_01071" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR009777" FT /db_xref="UniProtKB/TrEMBL:D2TGN8" FT /protein_id="CBG86887.1" FT /translation="MHTQVLFEHPLNEKMRTWLRIEFLIQQLSANLPVASHADALHFFR FT NVGDLLDVFERGEVRTELLKELERQQRKLQAWIEVPGVDQSRIEALRQQLKSAGSVLIS FT APRIGQFLREDRLIALVRQRLSIPGGCCSFDLPTLHMWLHLPQAQRDAQVEAWLASLNP FT LNQALTLILDLIRHSAPFRKQTSLNGFYQDNGEDADLLRLNLPLDIQLYPQISGHKSRF FT AIRFMPIDSENGVVPERLDFELACC" FT misc_feature complement(127652..128386) FT /locus_tag="ROD_01071" FT /note="HMMPfam hit to PF07072, Protein of unknown function FT DUF1342, score 4.1e-164" FT /inference="protein motif:PFAM:PF07072" FT CDS complement(128392..129012) FT /transl_table=11 FT /gene="coaE" FT /locus_tag="ROD_01081" FT /product="dephospho-CoA kinase" FT /EC_number="2.7.1.24" FT /db_xref="GOA:D2TGN9" FT /db_xref="InterPro:IPR001977" FT /db_xref="UniProtKB/TrEMBL:D2TGN9" FT /protein_id="CBG86888.1" FT /translation="MRYTVALTGGIGSGKSTVANAFADLGVQIVDADIIARQVVAPGQP FT ALEAIASRFGKALIGADGTLQRRLLRERIFANPQEKAWLNALLHPLIHQETQRQFRQAT FT SSYVLWVVPLLVENGLHSKANRVLVVDVSAETQLSRTMLRDDVTRAHVEQILAAQATRE FT ARLAVADDVIDNNGAPESIKPDVARLHALYLQLASQFVSQEKP" FT misc_feature complement(128473..129006) FT /gene="coaE" FT /locus_tag="ROD_01081" FT /note="HMMPfam hit to PF01121, Dephospho-CoA kinase, score FT 2e-103" FT /inference="protein motif:PFAM:PF01121" FT misc_feature complement(128737..128826) FT /note="PS01294 Uncharacterized protein family UPF0038 FT signature." FT /inference="protein motif:Prosite:PS01294" FT sig_peptide complement(128944..129012) FT /gene="coaE" FT /locus_tag="ROD_01081" FT /note="Signal peptide predicted for ROD01081 by SignalP 2.0 FT HMM (Signal peptide probability 0.627) with cleavage site FT probability 0.304 between residues 23 and 24" FT misc_feature complement(128965..128988) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 129238..130281 FT /transl_table=11 FT /gene="guaC" FT /locus_tag="ROD_01091" FT /product="GMP reductase" FT /EC_number="1.7.1.7" FT /db_xref="GOA:D2TGP0" FT /db_xref="InterPro:IPR001093" FT /db_xref="InterPro:IPR005993" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR015875" FT /db_xref="UniProtKB/TrEMBL:D2TGP0" FT /protein_id="CBG86889.1" FT /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSEVELERQYTFKHSGQSWS FT GVPIIAANMDTVGTFEMAKALAAFDILTAVHKHYSVEDWSAFIEGASASVLRHVMVSTG FT TSDADFDKTKQILALNPELNFVCIDVANGYSEHFVQFVSKAREAWPNKTICAGNVVTGE FT MCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVSDGGC FT TTPGDVAKAFGGGADFVMLGGMLAGHDESGGKIVDENGEKFMLFYGMSSESAMTRHVGG FT VAQYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQE FT NRIFNSL" FT misc_feature 129259..130278 FT /gene="guaC" FT /locus_tag="ROD_01091" FT /note="HMMPfam hit to PF00478, IMP dehydrogenase/GMP FT reductase, score 1.2e-159" FT /inference="protein motif:PFAM:PF00478" FT misc_feature 129763..129801 FT /note="PS00487 IMP dehydrogenase / GMP reductase FT signature." FT /inference="protein motif:Prosite:PS00487" FT CDS complement(130353..131555) FT /transl_table=11 FT /gene="hofC" FT /locus_tag="ROD_01101" FT /product="protein transport protein HofC" FT /db_xref="GOA:D2TGP1" FT /db_xref="InterPro:IPR001992" FT /db_xref="InterPro:IPR003004" FT /db_xref="InterPro:IPR018076" FT /db_xref="UniProtKB/TrEMBL:D2TGP1" FT /protein_id="CBG86890.1" FT /translation="MSANKLWRWQGIDNGGSPGEGTLWAENRALLMLALQQCGITPLRV FT KRLRVNRALWRSDKCAEVIQQLATLLQAGLTLSDGLWLLAGQHPDKQWQALLESLAREL FT ENGAPLSSALAQWPDIFPPLYLAMIRTGELTGKLDVCCSELARQQKAQKQLRDKVAKAL FT RYPTIILTMAVMVVLAMLHFVLPEFAAIYRTFNTPLPALTQWIIAVANGSARWGWLVIL FT TGVALTAVAAGLRHHVAWQVLRQRWLLRAPVVGRLLRGQKLTQIFTILALTQSAGISFL FT PALESVRETLRCPYWTQRISQVQDDISRGIPVWQAFKNAQEFTPLCLQLVRTGEAAGSL FT DAMLHNLARHHSESTLALADSLAALLEPALLVITGLIIGTLVVAMYLPIFHLGDAMSGM FT G" FT misc_feature complement(join(130386..130454,130842..130910, FT 131001..131069)) FT /gene="hofC" FT /locus_tag="ROD_01101" FT /note="3 probable transmembrane helices predicted for FT ROD01101 by TMHMM2.0 at aa 163-185, 216-238 and 368-390" FT misc_feature complement(130392..130760) FT /gene="hofC" FT /locus_tag="ROD_01101" FT /note="HMMPfam hit to PF00482, Bacterial type II secretion FT system protein, score 1.5e-14" FT /inference="protein motif:PFAM:PF00482" FT misc_feature complement(130998..131369) FT /gene="hofC" FT /locus_tag="ROD_01101" FT /note="HMMPfam hit to PF00482, Bacterial type II secretion FT system protein, score 9.9e-22" FT /inference="protein motif:PFAM:PF00482" FT misc_feature complement(130998..131084) FT /note="PS00874 Bacterial type II secretion system protein F FT signature." FT /inference="protein motif:Prosite:PS00874" FT CDS complement(131545..132930) FT /transl_table=11 FT /gene="hofB" FT /locus_tag="ROD_01111" FT /product="protein transport protein HofB" FT /db_xref="GOA:D2TGP2" FT /db_xref="InterPro:IPR001482" FT /db_xref="InterPro:IPR007831" FT /db_xref="UniProtKB/TrEMBL:D2TGP2" FT /protein_id="CBG86891.1" FT /translation="MNTTQLKALCQRYQGILLDADSEAVHVAVVDAPSHQLLDALHFAT FT TKRIEIVCWTRQQMEGHLHQPQQTLPAVIPESSLSAATLLDKTLQAALTSRASDIHIEP FT AEHHFRIRLRIDGVLHSLPDIAKETGVALTARLKVLSHLDIAEHRLPQDGQFTVELNGA FT AVSFRIATLPCRQGEKVVLRLLHQVNQALEVTALGMHDTQLSAFNHALQQPQGLVLVTG FT PTGSGKTVTLYSALQSRNATEVNLCSVEDPVEIPLEGINQTQIHPRAGLTFQSVLRALL FT RQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTCEALVRLQQMGVARWMLSS FT ALTLVVAQRLVRKLCPHCRRLTDDPVRLPQAVCAMPLPRWLAPGCEHCYHGYYGRTALF FT EVLPISAGLRQQIANGATAEALEGYARQAGMLTLFESGCRAVDQGLTTFEELVRILGIP FT NER" FT misc_feature complement(131869..132705) FT /gene="hofB" FT /locus_tag="ROD_01111" FT /note="HMMPfam hit to PF00437, Bacterial type II secretion FT system protein E, score 3.4e-129" FT /inference="protein motif:PFAM:PF00437" FT misc_feature complement(132046..132090) FT /note="PS00662 Bacterial type II secretion system protein E FT signature." FT /inference="protein motif:Prosite:PS00662" FT misc_feature complement(132244..132267) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(132927..133379) FT /transl_table=11 FT /gene="ppdD" FT /locus_tag="ROD_01121" FT /product="prepilin peptidase dependent protein D precursor" FT /db_xref="InterPro:IPR001120" FT /db_xref="InterPro:IPR012902" FT /db_xref="UniProtKB/TrEMBL:D2TGP3" FT /protein_id="CBG86892.1" FT /translation="MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDILQT FT FVPYRTAVELCALEHGGVATCDAGSNGIPAPTTTRYVSAMSVAKGVVSMSGQESLNGLS FT VVMTPVWDNANGITGWTRSCAIQNDGALQQACEDVFRFDANAGGSE" FT misc_feature complement(133293..133361) FT /gene="ppdD" FT /locus_tag="ROD_01121" FT /note="1 probable transmembrane helix predicted for FT ROD01121 by TMHMM2.0 at aa 7-29" FT misc_feature complement(133296..133367) FT /gene="ppdD" FT /locus_tag="ROD_01121" FT /note="HMMPfam hit to PF07963, Prepilin-type FT cleavage/methylation, N-terminal, score 1.9e-08" FT /inference="protein motif:PFAM:PF07963" FT misc_feature complement(133305..133367) FT /note="PS00409 Prokaryotic N-terminal methylation site." FT /inference="protein motif:Prosite:PS00409" FT CDS complement(133578..134513) FT /transl_table=11 FT /gene="nadC" FT /locus_tag="ROD_01131" FT /product="nicotinate-nucleotide pyrophosphorylase FT [carboxylating]" FT /db_xref="GOA:D2TGP4" FT /db_xref="InterPro:IPR002638" FT /db_xref="InterPro:IPR004393" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR022412" FT /db_xref="UniProtKB/TrEMBL:D2TGP4" FT /protein_id="CBG86893.1" FT /translation="MFPPYDSLAIWSFIMPPRRYNPDYRRDALLERINLDIPAAVAQAL FT REDLGGEVDAGNDITAQLLPENTRAHATVITRENGVFCGKRWVEEVFIQLAGDDVTLIW FT HVEDGDSISASQPLFELEGPARILLTGERTALNFVQTLSGVASEVRKYVDLLAGTKTQL FT LDTRKTLPGLRTALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSVRQAVEKAFWLHP FT DVPVEVEVENLDELDEALKAGADIIMLDNFETEQMREAVKRANGQARLEVSGNVTDATL FT REFAETGVDFISVGALTKHVRALDLSMRFR" FT misc_feature complement(133587..134081) FT /gene="nadC" FT /locus_tag="ROD_01131" FT /note="HMMPfam hit to PF01729, Quinolinate phosphoribosyl FT transferase, score 3.2e-99" FT /inference="protein motif:PFAM:PF01729" FT misc_feature complement(134085..134354) FT /gene="nadC" FT /locus_tag="ROD_01131" FT /note="HMMPfam hit to PF02749, Quinolinate phosphoribosyl FT transferase, score 1.4e-42" FT /inference="protein motif:PFAM:PF02749" FT CDS 134559..135122 FT /transl_table=11 FT /gene="ampD" FT /locus_tag="ROD_01141" FT /product="N-acetyl-anhydromuramyl-L-alanine-amidase" FT /db_xref="GOA:D2TGP5" FT /db_xref="InterPro:IPR002502" FT /db_xref="UniProtKB/TrEMBL:D2TGP5" FT /protein_id="CBG86894.1" FT /translation="MLLDKGWLAEARRVPSPHYDCRPDDENPSLLVVHNISLPPGEFGG FT PWIDALFSGTIDPAAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSHYRG FT RERCNDFSIGIELEGTDTLAYTDAQYQQLAAITRTLITHYPAIADNTTGHCDIAPERKT FT DPGPAFDWTRFRALVTPSSDKEMT" FT misc_feature 134607..135089 FT /gene="ampD" FT /locus_tag="ROD_01141" FT /note="HMMPfam hit to PF01510, N-acetylmuramoyl-L-alanine FT amidase, family 2, score 5.7e-60" FT /inference="protein motif:PFAM:PF01510" FT CDS 135119..135973 FT /transl_table=11 FT /gene="ampE" FT /locus_tag="ROD_01151" FT /product="AmpE protein" FT /db_xref="InterPro:IPR004485" FT /db_xref="UniProtKB/TrEMBL:D2TGP6" FT /protein_id="CBG86895.1" FT /translation="MTLFTTLLVLLIERLFKLGEHWQFDHRLEAFFRRVKRFSMVRTLG FT MTLIAMALTFLLLRALDGLLFNVPTIVAWILIGLLCIGAGKVRMHYHAYLTAASRDDAH FT ARTAMASELTMIHGVPPGCDEREFLRELQNALLWINFRFYLAPLFWLIVGGTVGPVLLV FT GYAFLRAWQSWLARYLTPHERLQSGIDAILHVLDWIPVRLAGVVYALIGHGEKALPAWF FT ASLTDLHTAQYQVVTRLAQFSLAREPHTDKVGTPKAAVSMAKKTSLVGVVAIAFLTIYG FT ALV" FT misc_feature join(135233..135292,135305..135373,135554..135622, FT 135914..135967) FT /gene="ampE" FT /locus_tag="ROD_01151" FT /note="4 probable transmembrane helices predicted for FT ROD01151 by TMHMM2.0 at aa 39-58, 63-85, 146-168 and FT 266-283" FT CDS complement(136206..137156) FT /transl_table=11 FT /locus_tag="ROD_01161" FT /product="putatuve glycosysl hydrolase" FT /db_xref="GOA:D2TGP7" FT /db_xref="InterPro:IPR006710" FT /db_xref="InterPro:IPR016828" FT /db_xref="InterPro:IPR023296" FT /db_xref="UniProtKB/TrEMBL:D2TGP7" FT /protein_id="CBG86896.1" FT /translation="MPNWPNPFIEQRADPFILRDGSDYYFIASVPEYDRLEIRRAASLE FT GLRNAEPVVVWRKPETGPMCELIWAPEIHRINGKWYIYFAAAHTQALDKLGMFQHRMYA FT LECADADPLTGLWREKGQIKTPFDTFALDATTFHHQGKQWYLWAQKSPHIAGNSNIYLA FT ELENPWTLKGEPVMLSQPEYDWECRGFWVNEGPAVLTHGDRLFISYSASATDENYCMGL FT LWIDMNADPQDPANWHKSPRPVFATSYENRQYGPGHNSFTQTPEGEDVLVYHARNYTEI FT EGDPLYDPNRHTRLKLVRWDENGMPDFGIPPADTL" FT misc_feature complement(136239..137147) FT /locus_tag="ROD_01161" FT /note="HMMPfam hit to PF04616, Glycoside hydrolase, family FT 43, score 2.4e-127" FT /inference="protein motif:PFAM:PF04616" FT CDS complement(137156..138562) FT /transl_table=11 FT /locus_tag="ROD_01171" FT /product="putative symporter" FT /db_xref="GOA:D2TGP8" FT /db_xref="InterPro:IPR001927" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="UniProtKB/TrEMBL:D2TGP8" FT /protein_id="CBG86897.1" FT /translation="MDKGKLSVREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAPA FT LVGVLLLSVRVIDAVTDPVMGAIADRTQSKYGRFRPWLLWIAFPYALFSILMFTTPDWS FT YNSKVIYAFVTYFLLSITYTAINIPYCSLGGVITNDPKERVACQSYRFVLVGIATLLLS FT LTLLPMVDWFGGGDKAKGYQMAMTVLAIIGMCMFLFCFATVRERVRPAVPTHDDMKNDF FT KDVWKNDQWVRILLLTLCNVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIG FT SMLAKVLTDRWCKLKVFFWTNIALALFSCAFYFFDPKTTALIVVLYFLLNILHQIPSPL FT HWSLMADVDDYGEWKTGKRITGISFSGNLFFLKLGLAIAGAMVGFLLSWYGYDAGAKAQ FT SDTAINGIVLLFTVIPGVGYLITAGVVRLLKVDRELMKQIQDDLEKRRVNYRELNEYQE FT LKATESVRKA" FT misc_feature complement(join(137276..137344,137402..137470, FT 137531..137599,137612..137680,137699..137767, FT 137795..137863,137960..138013,138041..138109, FT 138170..138238,138266..138319,138380..138448, FT 138461..138529)) FT /locus_tag="ROD_01171" FT /note="12 probable transmembrane helices predicted for FT ROD01171 by TMHMM2.0 at aa 12-34, 39-61, 82-99, 109-131, FT 152-174, 184-201, 234-256, 266-288, 295-317, 322-344, FT 365-387 and 407-429" FT misc_feature complement(137399..138508) FT /locus_tag="ROD_01171" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 1.9e-10" FT /inference="protein motif:PFAM:PF07690" FT misc_feature complement(137633..137665) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(138722..140095) FT /transl_table=11 FT /gene="aroP" FT /locus_tag="ROD_01181" FT /product="aromatic amino acid transport protein" FT /db_xref="GOA:D2TGP9" FT /db_xref="InterPro:IPR002293" FT /db_xref="InterPro:IPR004840" FT /db_xref="InterPro:IPR004841" FT /db_xref="UniProtKB/TrEMBL:D2TGP9" FT /protein_id="CBG86898.1" FT /translation="MMDSQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAG FT PGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGGFAGFASGWNYWVLYV FT LVAMAELTAVGKYIQFWYPEIPTWVSAAAFFILINAINLTNVKVFGEMEFWFAIIKVIA FT VVAMILFGGWLLFSGNGGPQATVRNLWEQGGFLPHGMTGLVMMMAIIMFSFGGLELVGI FT TAAEADNPEQSIPKATNQVIYRILIFYVGSLAVLLSLLPWTRVTADTSPFVLIFHELGD FT TFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALLSVDKRGVPVNTILVS FT ALVTALCVLINYMAPESAFGLLMALVVSALVINWAMISLAHIKFRRAKQQQGVKTRFPA FT LLYPLGNWICLLFMAAVLVIMLITPGMAISVYLIPVWLLILGVGYLCKQKTAKTVKAH" FT misc_feature complement(138725..140041) FT /gene="aroP" FT /locus_tag="ROD_01181" FT /note="HMMPfam hit to PF00324, Amino acid FT permease-associated region, score 1.1e-176" FT /inference="protein motif:PFAM:PF00324" FT misc_feature complement(join(138758..138817,138830..138898, FT 138956..139024,139034..139102,139181..139249, FT 139307..139375,139433..139501,139568..139636, FT 139673..139741,139769..139837,139898..139957, FT 139970..140038)) FT /gene="aroP" FT /locus_tag="ROD_01181" FT /note="12 probable transmembrane helices predicted for FT ROD01181 by TMHMM2.0 at aa 20-42, 47-66, 87-109, 119-141, FT 154-176, 199-221, 241-263, 283-305, 332-354, 358-380, FT 400-422 and 427-446" FT misc_feature complement(139874..139966) FT /note="PS00218 Amino acid permeases signature." FT /inference="protein motif:Prosite:PS00218" FT CDS 140658..141422 FT /transl_table=11 FT /gene="pdhR" FT /locus_tag="ROD_01191" FT /product="pyruvate dehydrogenase complex repressor" FT /db_xref="GOA:D2TGQ0" FT /db_xref="InterPro:IPR000524" FT /db_xref="InterPro:IPR011711" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TGQ0" FT /protein_id="CBG86899.1" FT /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFD FT VSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHLESQFDLLETR FT HALEGIAAYYAALRSTSEDKTRIRELHHAIELAQQSGDLDAESDAVLQYQIAVTEAAHN FT VVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGNPEEAREASH FT RHLAFIEEILLDRSREESRRERALRRLEQRKN" FT misc_feature 140688..140879 FT /gene="pdhR" FT /locus_tag="ROD_01191" FT /note="HMMPfam hit to PF00392, Bacterial regulatory protein FT GntR, HTH, score 3.9e-34" FT /inference="protein motif:PFAM:PF00392" FT misc_feature 140757..140831 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT /inference="protein motif:Prosite:PS00043" FT misc_feature 140760..140825 FT /note="Predicted helix-turn-helix motif with score FT 1327.000, SD 3.71 at aa 35-56, sequence FT PPERELAKQFDVSRPSLREAIQ" FT misc_feature 140952..141338 FT /gene="pdhR" FT /locus_tag="ROD_01191" FT /note="HMMPfam hit to PF07729, GntR, C-terminal, score FT 2.6e-32" FT /inference="protein motif:PFAM:PF07729" FT CDS 141581..144244 FT /transl_table=11 FT /gene="aceE" FT /locus_tag="ROD_01201" FT /product="pyruvate dehydrogenase E1 component" FT /EC_number="1.2.4.1" FT /db_xref="GOA:D2TGQ1" FT /db_xref="InterPro:IPR004660" FT /db_xref="InterPro:IPR005474" FT /db_xref="InterPro:IPR009014" FT /db_xref="InterPro:IPR015941" FT /db_xref="UniProtKB/TrEMBL:D2TGQ1" FT /protein_id="CBG86900.1" FT /translation="MSERFQNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLSEAR FT KGGVKVAAGAGASNYINTIAVEDEPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLEL FT GGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTEEQM FT DNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSK FT QTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEG FT IFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFG FT KYPETAALVADWTDEQIWALNRGGHDPKKVYAALKKAQETKGKATVILAHTIKGYGMGD FT SAEGKNIAHQVKKMNMDGVRYVRDRFNVPVSDADLEKLPYITFPEGSDEHKYLHERRQA FT LHGYLPSRQPNFTEKLELPTLEDFGALLEEQNKEISTTIAFVRALNVMLKNKSIKDRLV FT PIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAG FT SSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLN FT GEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLN FT ENYHMPAMPEGAEEGIRKGIYKLDTLEGNKGKVQLLGSGSILRHVREAAEILAKEYGVG FT SDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPAVASTDYMKLFAEQV FT RTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGELAKRGEIDKKVVADA FT IAKFNIDAEKVNPRLA" FT misc_feature 142667..142768 FT /gene="aceE" FT /locus_tag="ROD_01201" FT /note="HMMPfam hit to PF00456, Transketolase, N-terminal, FT score 7e-05" FT /inference="protein motif:PFAM:PF00456" FT CDS 144259..145869 FT /transl_table=11 FT /gene="aceF" FT /locus_tag="ROD_01211" FT /product="dihydrolipoamide acetyltransferase component (E2) FT of pyruvate dehydrogenase" FT /EC_number="2.3.1.12" FT /db_xref="GOA:D2THC6" FT /db_xref="InterPro:IPR000089" FT /db_xref="InterPro:IPR001078" FT /db_xref="InterPro:IPR003016" FT /db_xref="InterPro:IPR004167" FT /db_xref="InterPro:IPR006256" FT /db_xref="InterPro:IPR011053" FT /db_xref="InterPro:IPR023213" FT /db_xref="UniProtKB/TrEMBL:D2THC6" FT /protein_id="CBG86901.1" FT /translation="MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASME FT VPSPQAGVVKEIKVSVGDKTETGKLIMIFDSADGAADAAPAPAEEKKEAAPAKAEAAPA FT AAAPAATGAKEVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAG FT TVKEIKISTGDKVKTGSLIMIFEVEGAAPAAAPAKQEAAAPAPAAKAEAPAAAAKAEGK FT SAFAENDAYVHATPLIRRLAREFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAP FT AAASGGGLPGMLPWPKVDFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDI FT TDLEAFRKQQNAEAEKRKLDVKFTPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKY FT INIGVAVDTPNGLVVPVFKDVNKKSITELSRELTTISKKARDGKLTAGEMQGGCFTISS FT IGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPRLMMPISLSFDHRVIDGADG FT ARFITIINNMLSDIRRLVM" FT misc_feature 144265..144480 FT /gene="aceF" FT /locus_tag="ROD_01211" FT /note="HMMPfam hit to PF00364, Biotin/lipoyl attachment, FT score 2.5e-28" FT /inference="protein motif:PFAM:PF00364" FT misc_feature 144331..144420 FT /note="PS00189 2-oxo acid dehydrogenases acyltransferase FT component lipoyl binding site." FT /inference="protein motif:Prosite:PS00189" FT misc_feature 144598..144813 FT /gene="aceF" FT /locus_tag="ROD_01211" FT /note="HMMPfam hit to PF00364, Biotin/lipoyl attachment, FT score 3.9e-28" FT /inference="protein motif:PFAM:PF00364" FT misc_feature 144664..144753 FT /note="PS00189 2-oxo acid dehydrogenases acyltransferase FT component lipoyl binding site." FT /inference="protein motif:Prosite:PS00189" FT misc_feature 144904..144927 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 144958..145068 FT /gene="aceF" FT /locus_tag="ROD_01211" FT /note="HMMPfam hit to PF02817, E3 binding, score 2e-18" FT /inference="protein motif:PFAM:PF02817" FT misc_feature 145165..145866 FT /gene="aceF" FT /locus_tag="ROD_01211" FT /note="HMMPfam hit to PF00198, Catalytic domain of FT components of various dehydrogenase complexes, score FT 6.5e-111" FT /inference="protein motif:PFAM:PF00198" FT CDS 146068..147492 FT /transl_table=11 FT /gene="lpdA" FT /locus_tag="ROD_01221" FT /product="dihydrolipoyl dehydrogenase (E3 component of FT pyruvate and 2-oxoglutarate dehydrogenase complexes)" FT /EC_number="1.8.1.4" FT /db_xref="GOA:D2THC7" FT /db_xref="InterPro:IPR001327" FT /db_xref="InterPro:IPR004099" FT /db_xref="InterPro:IPR006258" FT /db_xref="InterPro:IPR012999" FT /db_xref="InterPro:IPR013027" FT /db_xref="InterPro:IPR016156" FT /db_xref="InterPro:IPR023753" FT /db_xref="UniProtKB/TrEMBL:D2THC7" FT /protein_id="CBG86902.1" FT /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVC FT LNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVITQLTGGLAGM FT AKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRVW FT DSTDALELKEVPKRMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKDIVKVF FT TKRISKKFNLMLETKVTAVEAKEDGIYVSMEGKKAPAEAQRYDAVLVAIGRVPNGKNLD FT AGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKH FT YFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKL FT IFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEV FT FEGSITDLPNPKAKKK" FT misc_feature 146089..147024 FT /gene="lpdA" FT /locus_tag="ROD_01221" FT /note="HMMPfam hit to PF07992, FAD-dependent pyridine FT nucleotide-disulphide oxidoreductase, score 1.1e-76" FT /inference="protein motif:PFAM:PF07992" FT misc_feature 146191..146223 FT /note="PS00076 Pyridine nucleotide-disulphide FT oxidoreductases class-I active site." FT /inference="protein motif:Prosite:PS00076" FT misc_feature 146596..146883 FT /gene="lpdA" FT /locus_tag="ROD_01221" FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, NAD-binding region, FT score 1.3e-24" FT /inference="protein motif:PFAM:PF00070" FT misc_feature 147106..147435 FT /gene="lpdA" FT /locus_tag="ROD_01221" FT /note="HMMPfam hit to PF02852, Pyridine FT nucleotide-disulphide oxidoreductase dimerisation region, FT score 2.5e-52" FT /inference="protein motif:PFAM:PF02852" FT CDS complement(147571..148362) FT /transl_table=11 FT /locus_tag="ROD_01231" FT /product="putative exported protein" FT /db_xref="InterPro:IPR021556" FT /db_xref="UniProtKB/TrEMBL:D2THC8" FT /protein_id="CBG86903.1" FT /translation="MKKMLFSALLLSLPLLSHAQQMFATPDEAASAFASAVASKNDAQL FT TALLGDNWRQFLPPDGADPQAVARFNRDWKISHRIVRQGNVAYLNVGQQNWQLPIPVVK FT SDTGWHFDMSAAQDEILTRTIGRNELSAIQAMRAYVDAQYDYRQRKQMFATKLISSEGQ FT QDGLYWPVQPGERPSPLGPAFSPDMHSEGYHGYHFRIIASNSSRGFALLAWPVTWGETG FT VMSFVVNQDDKVYQADLGKETEKKAAAITQYSDQQPWQPVE" FT sig_peptide complement(148306..148362) FT /locus_tag="ROD_01231" FT /note="Signal peptide predicted for ROD01231 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.993 between residues 19 and 20" FT CDS complement(148375..149991) FT /transl_table=11 FT /locus_tag="ROD_01241" FT /product="putative exported protein" FT /db_xref="InterPro:IPR021728" FT /db_xref="UniProtKB/TrEMBL:D2THC9" FT /protein_id="CBG86904.1" FT /translation="MTLSFKPHVLALVCSAGLFAASGVIYVKSRTPEAPSQPVPVTTPA FT PAPAAPVVQPAFTTAQIDQWIAPIALYPDPLLSQVLMAATYPANVVQAVQWSRDNPTLQ FT GDAAIQAVSGQPWDPSVKSLVAFPQLMALMGENPQWVQDLGDAFLAQPQDVMDAVQRLR FT QLAQQTGSLQSTPQQTVTSTPKKSVATAQPAPAARTASATASTPTVIKIEPADPQVVYV FT PSYNPATVYGTWPNTAYPPVYLPPPPGEQFASSFVKGFGYSLGVATTYALFSNIDWDDD FT DDHHHHHDDDHHHDDHDHHHDGYQHNGDNININVNNFNRITGQHLQEQNLTWRHNPAYR FT DGVPYHNSATAQRFHQTNVSGGLSATRQPTAATRDSQRQAAMAQLQQRHPTAAAQQQSP FT SRDARRKAASQQLDQIARRNNYRGYDTDRASAPHQAIHKPTAVPLQQRREALKTRAQPH FT PVTQQQRDNARQRIAASTPEQRQTFRQNHANAFSGNDSRSPDWQSQQRRGQESRRVGHL FT SGEQRAAAREHLSERHEFRHR" FT sig_peptide complement(149932..149991) FT /locus_tag="ROD_01241" FT /note="Signal peptide predicted for ROD01241 by SignalP 2.0 FT HMM (Signal peptide probability 0.992) with cleavage site FT probability 0.580 between residues 20 and 21" FT CDS 150393..152990 FT /transl_table=11 FT /gene="acnB" FT /locus_tag="ROD_01251" FT /product="aconitate hydratase 2 (citrate hydro-lyase 2)" FT /EC_number="4.2.1.3" FT /db_xref="GOA:D2THD0" FT /db_xref="InterPro:IPR001030" FT /db_xref="InterPro:IPR004406" FT /db_xref="InterPro:IPR015928" FT /db_xref="InterPro:IPR015929" FT /db_xref="InterPro:IPR015930" FT /db_xref="InterPro:IPR015931" FT /db_xref="InterPro:IPR015933" FT /db_xref="InterPro:IPR015937" FT /db_xref="InterPro:IPR018136" FT /db_xref="UniProtKB/TrEMBL:D2THD0" FT /protein_id="CBG86905.1" FT /translation="MLEEYRKHVAERAAEGIVPKPLDATQMAALVELLKNPPAGEEEFL FT LDLLINRVPPGVDEAAYVKAGFLAAVAKGETTSPLVTPEKAIELLGTMQGGYNIHPLID FT ALDNDKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNAFAKQVMHSWADAEWFLSRPELA FT EKMTVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGAVGPIKQ FT IEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPYVPNKRGGGLVLGGKIAPI FT FFNTMEDAGALPVEVDVSNLNMGDVIDVYPYKGEVRNHESGELLATFALKTDVLIDEVR FT AGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESSRGFSLAQKMVGRACGVAGVR FT PGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSSDLVMQSFCHTAAYPKPVDVTTHH FT TLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAF FT AAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSG FT RILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGY FT GDRRTLERRIQGMEKWLADPQLLEADADAEYAAVIDIDLADIKEPILCAPNDPDDARLL FT SDVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGY FT YSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVFLASAELAA FT VAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFDQLSQYTEKADGVIFQTAV" FT misc_feature 150396..151538 FT /gene="acnB" FT /locus_tag="ROD_01251" FT /note="HMMPfam hit to PF06434, Aconitase B, N-terminal, FT bacterial, score 4.1e-290" FT /inference="protein motif:PFAM:PF06434" FT misc_feature 151539..152846 FT /gene="acnB" FT /locus_tag="ROD_01251" FT /note="HMMPfam hit to PF00330, Aconitase/3-isopropylmalate FT dehydratase large subunit, alpha/beta/alpha, score 6.4e-11" FT /inference="protein motif:PFAM:PF00330" FT misc_feature 152496..152549 FT /note="PS00450 Aconitase family signature 1." FT /inference="protein motif:Prosite:PS00450" FT misc_feature 152673..152714 FT /note="PS01244 Aconitase family signature 2." FT /inference="protein motif:Prosite:PS01244" FT CDS 153192..153554 FT /transl_table=11 FT /locus_tag="ROD_01261" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR008249" FT /db_xref="UniProtKB/TrEMBL:D2THD1" FT /protein_id="CBG86906.1" FT /translation="MDYEFLRDVTGRVLVRMSMGHEVVGHWFNEEVKENLTLLDEVEQA FT AQAVKGSERSWQRAGHEYTLWMDGEEVMIRANQLEFTGDEMEEGMNYYDEESLSLCGVE FT DFLQVVKAYRDFLRQS" FT misc_feature 153192..153545 FT /locus_tag="ROD_01261" FT /note="HMMPfam hit to PF06062, Uncharacterised conserved FT protein UCP006287, score 1.5e-74" FT /inference="protein motif:PFAM:PF06062" FT CDS 153736..154689 FT /transl_table=11 FT /locus_tag="ROD_01271" FT /product="2-keto-3-deoxygluconate permease" FT /db_xref="GOA:D2THD2" FT /db_xref="InterPro:IPR004684" FT /db_xref="UniProtKB/TrEMBL:D2THD2" FT /protein_id="CBG86907.1" FT /translation="MNIKKAIERVPGGMMVVPLVIGAIINTFAPQALEIGGFTTALFKN FT GAAPLIGAFLLCMGAGISVKAAPQALLQGGTITLTKLLVAIAIGLGVEHLFGAEGIFGL FT SGVAIIAAMSNSNGGLYAALVGEFGNERDVGAISILSLNDGPFFTMIALGAAGMANIPI FT MALVAVLIPLVVGMILGNLDPHMRDFLTKGGPLLIPFFAFALGAGVNLEMLLQGGLAGV FT LLGVLTTFVGGFFNIRADRLVGGSGIAGAAASSTAGNAVATPLAIAQADPSLAQVAAAA FT APLIAASVITTAILTPILTSWVAKKQARQNVKEKKA" FT misc_feature 153736..154659 FT /locus_tag="ROD_01271" FT /note="HMMPfam hit to PF03812, 2-keto-3-deoxygluconate FT permease, score 1.3e-96" FT /inference="protein motif:PFAM:PF03812" FT misc_feature join(153772..153840,153868..153927,153946..154005, FT 154033..154101,154135..154203,154213..154281, FT 154300..154368,154378..154446,154465..154533, FT 154576..154644) FT /locus_tag="ROD_01271" FT /note="10 probable transmembrane helices predicted for FT ROD01271 by TMHMM2.0 at aa 13-35, 45-64, 71-90, 100-122, FT 134-156, 160-182, 189-211, 215-237, 244-266 and 281-303" FT CDS 154686..155957 FT /transl_table=11 FT /locus_tag="ROD_01281" FT /product="conserved hypothetical protein" FT /note="Note the database hits to type III effectors" FT /db_xref="InterPro:IPR010737" FT /db_xref="UniProtKB/TrEMBL:D2THD3" FT /protein_id="CBG86908.1" FT /translation="MKMIVIADDFTGSNDTGVQLAKKGARTEVMLTPEQKPSRRADVLV FT INTESRAIPAEQAAKAVQQALAPWCEGDRMPLVYKKIDSTFRGNVGAEVTAAMRAARRR FT LAVIAAAIPAAGRTTRDGLCLVNGTPLLETEFASDPKTPILSSRIAELVALQSDVPVHE FT VSLDAVRRGELSALLAAYAAEGECMVVADAVEDRDLSLIAHAVCEQKEMPLLVGAAGLA FT NALPVRTFMQAKQELPVLVVAGSMSEATRRQVEKALCHGRAKVVDIDASRLASAQAEQE FT IASVVEQACALLGQRHHTILRTSRSAEDRQMIDSLCRELGVSRQQLGEQLSQRLGKITL FT RIIERSRIGGLFLTGGDIATAVASALGAEGYRIQSEVASCIPCGTFVNSEIDDLPVITK FT AGGFGSDSTLCDALYFIEEMYRGN" FT misc_feature 155151..155810 FT /locus_tag="ROD_01281" FT /note="HMMPfam hit to PF07005, Type III effector FT Hrp-dependent outers, score 4.9e-06" FT /inference="protein motif:PFAM:PF07005" FT CDS 155947..156930 FT /transl_table=11 FT /locus_tag="ROD_01291" FT /product="4-hydroxythreonine-4-phosphate dehydrogenase" FT /db_xref="GOA:D2THD4" FT /db_xref="InterPro:IPR005255" FT /db_xref="UniProtKB/TrEMBL:D2THD4" FT /protein_id="CBG86909.1" FT /translation="MVTKTIAITMGDPAGIGPEIIVKALGEEELNGAPLVVVGCLQTLK FT RLQAKGLAEGVTFRAIEQVADARFAPGVIHVIDEPLAQPEALEPGKVQAQAGDLAYRCV FT KRATELAMKGDVHAIATAPLNKEALHLAGHNYPGHTELLATLTDSRDYAMVLYTDRLKV FT IHVSTHIALRKFLDTLNGQRVETVIGIADRFLKRVGFAHPRIAVAGVNPHAGENGLFGD FT EEIRIVAPAIENMKAQGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLGFY FT DGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKLAMQLA" FT misc_feature 156016..156918 FT /locus_tag="ROD_01291" FT /note="HMMPfam hit to PF04166, Pyridoxal phosphate (active FT vitamin B6) biosynthesis PdxA, score 1.5e-115" FT /inference="protein motif:PFAM:PF04166" FT misc_feature 156034..156066 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 156940..157719 FT /transl_table=11 FT /locus_tag="ROD_01301" FT /product="putative transcriptional regulator" FT /db_xref="GOA:D2THD5" FT /db_xref="InterPro:IPR001034" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR014036" FT /db_xref="InterPro:IPR018356" FT /db_xref="UniProtKB/TrEMBL:D2THD5" FT /protein_id="CBG86910.1" FT /translation="MKGQHRLDKIVAYLKNHTLVTVEQLVDAVEASPATIRRDLIKLDE FT QGVISRSHGGVALRRFEPAQPTTNEKQLRSPAEKRAIARFAASMVRPGDAVVLDAGTTM FT LELAKCLTHLPLRVITVDLHIALFLCEFRQIEVTIIGGRIDDSSQSCIGESGRKMLRSV FT YPDIAFMSCNTWSMEKGVTTPTEDKAGLKQEIIANAQRKVLLADSSKYGAHSLFNVTPL FT SRFTDVVTDINLPHSAQDELKALPVALTLVQPEPSEF" FT misc_feature 156955..157113 FT /locus_tag="ROD_01301" FT /note="HMMPfam hit to PF08220, Bacterial regulatory FT protein, DeoR N-terminal, score 5.9e-18" FT /inference="protein motif:PFAM:PF08220" FT misc_feature 156955..157059 FT /note="PS00894 Bacterial regulatory proteins, deoR family FT signature." FT /inference="protein motif:Prosite:PS00894" FT misc_feature 157165..157632 FT /locus_tag="ROD_01301" FT /note="HMMPfam hit to PF00455, Bacterial regulatory FT protein, DeoR, score 1.2e-48" FT /inference="protein motif:PFAM:PF00455" FT CDS complement(158031..158825) FT /transl_table=11 FT /gene="speD" FT /locus_tag="ROD_01311" FT /product="S-adenosylmethionine decarboxylase proenzyme" FT /EC_number="4.1.1.50" FT /db_xref="GOA:D2THD6" FT /db_xref="InterPro:IPR003826" FT /db_xref="InterPro:IPR009165" FT /db_xref="InterPro:IPR016067" FT /db_xref="UniProtKB/TrEMBL:D2THD6" FT /protein_id="CBG86911.1" FT /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNA FT NRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPLLIDKTEHPGPLPET FT VVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTI FT DYRVRGFTRDINGMKHFIDHEINSIQNFMSEDMKSLYDMVDVNVYQENIFHTKMLLKEF FT DLKHYMFHTRPEDLTEAERQEITTALWKEMREIYYGRNIPAV" FT misc_feature complement(158319..158714) FT /gene="speD" FT /locus_tag="ROD_01311" FT /note="HMMPfam hit to PF02675, S-adenosylmethionine FT decarboxylase related, score 2.1e-78" FT /inference="protein motif:PFAM:PF02675" FT CDS complement(158841..159707) FT /transl_table=11 FT /gene="speE" FT /locus_tag="ROD_01321" FT /product="spermidine synthase" FT /EC_number="2.5.1.16" FT /db_xref="GOA:D2THD7" FT /db_xref="InterPro:IPR001045" FT /db_xref="UniProtKB/TrEMBL:D2THD7" FT /protein_id="CBG86912.1" FT /translation="MAENPQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGR FT VMALDGVVQTTERDEFIYHEMMTHVPLFAHGHARHVLIIGGGDGAMLREVTRHKNVETI FT TMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTQQTFDVIISDCTDPI FT GPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQDEALDSHRKLSHYFADVGFYQAA FT IPTYYGGIMTFAWATDNEALRHLSTEIIQARFHTSGLKCRYYNPAIHTAAFALPQYLQD FT ALTSSSS" FT misc_feature complement(158976..159692) FT /gene="speE" FT /locus_tag="ROD_01321" FT /note="HMMPfam hit to PF01564, Spermine synthase, score FT 1.1e-133" FT /inference="protein motif:PFAM:PF01564" FT misc_feature complement(159270..159305) FT /note="PS00136 Serine proteases, subtilase family, aspartic FT acid active site." FT /inference="protein motif:Prosite:PS00136" FT misc_feature complement(159426..159467) FT /note="PS01330 Spermidine/spermine synthases family FT signature." FT /inference="protein motif:Prosite:PS01330" FT CDS complement(159812..160120) FT /transl_table=11 FT /locus_tag="ROD_01331" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR019114" FT /db_xref="UniProtKB/TrEMBL:D2THD8" FT /protein_id="CBG86913.1" FT /translation="MAVCANSYALSESEAEDMADLTAVFVFLKNDCGYQNLPNGQIRRA FT LVFFAQQNQWDLSNYDTFDMKSLGEDSYRDLSGIGIPVAKKCKALARDSLSLLAYVK" FT CDS 160327..161877 FT /transl_table=11 FT /gene="cueO" FT /locus_tag="ROD_01341" FT /product="blue copper oxidase precursor (copper efflux FT oxidase)" FT /db_xref="GOA:D2THD9" FT /db_xref="InterPro:IPR001117" FT /db_xref="InterPro:IPR002355" FT /db_xref="InterPro:IPR006311" FT /db_xref="InterPro:IPR008972" FT /db_xref="InterPro:IPR011706" FT /db_xref="InterPro:IPR011707" FT /db_xref="UniProtKB/TrEMBL:D2THD9" FT /protein_id="CBG86914.1" FT /translation="MQRRDFLKYSVALGMASALPLWSRAAFAAGRPALPVPQLLTADAR FT NRISLMVQAGQSTFSGKTATTWGYNGSLLGPALKLQKGKAVTVDIHNQLAEETTVHWHG FT LEVPGEVDGGPQGIIPAGGKRTVTFTPQQRAATCWFHPHQHGKTGHQVAMGLAGLVIIE FT DEEMHKLLLPKQWGIDDVPVIVQDKRFTDAGQIDYQLDVMTAAVGWFGDTLLTNGAIYP FT QHAAPRGWLRLRLLNGCNARSLNFAASDNRPLYVIASDGGLLAEPVKVNELPVLMGERF FT EVLVDISDGKPFDLVTLPVSQMGMAVAPFDKPHPVMRVQPVAVNASGMLPDTLATMPGL FT PPLEGLTTRTLQLSMDPMLDMMGMQKLMEKYGDQAMAGMSHGQMQGHMQHGRMGEMHHG FT GHFDFHNANKINGVAFDMNKPMFAASKGQYERWVISGVGDMMLHPFHIHGTQFRILSEN FT GQPPAAHRAGWKDTVHVEGGVSEVLVRFEHEAPKEFAYMAHCHLLEHEDTGMMAGFTV" FT sig_peptide 160327..160410 FT /gene="cueO" FT /locus_tag="ROD_01341" FT /note="Signal peptide predicted for ROD01341 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 28 and 29" FT misc_feature 160477..160827 FT /gene="cueO" FT /locus_tag="ROD_01341" FT /note="HMMPfam hit to PF07732, Multicopper oxidase, type 3, FT score 4.1e-47" FT /inference="protein motif:PFAM:PF07732" FT misc_feature 161458..161874 FT /gene="cueO" FT /locus_tag="ROD_01341" FT /note="HMMPfam hit to PF07731, Multicopper oxidase, type 2, FT score 3e-20" FT /inference="protein motif:PFAM:PF07731" FT misc_feature 161821..161856 FT /note="PS00080 Multicopper oxidases signature 2." FT /inference="protein motif:Prosite:PS00080" FT repeat_region complement(161908..163279) FT /note="Insertion sequence ISCro5. Has 13 bp perfect, FT subterminal inverted repeats but no direct repeats. 1 of 5 FT 100% identical ISCro5 elements in CR chromosome, ISCro5 FT includes 7 bp 5' and 3 bp 3' outside of the inverted FT repeats, common to the IS1111 subgroup of the IS110 family. FT Each IS element is flanked by the same 4 bp sequence 5' and FT 7 bp sequence 3' which likely represents its target FT sequence" FT repeat_region 161911..161923 FT /note="13 bp subterminal inverted repeat of ISCro5" FT CDS complement(162185..163195) FT /transl_table=11 FT /locus_tag="ROD_01351" FT /product="ISCro5 transposase" FT /db_xref="GOA:D2THE0" FT /db_xref="InterPro:IPR002525" FT /db_xref="InterPro:IPR003346" FT /db_xref="InterPro:IPR003583" FT /db_xref="UniProtKB/TrEMBL:D2THE0" FT /protein_id="CBG86915.1" FT /translation="MNIKRIGLDLAKLVFQLHGVDHHERVVLRKTLRRSQMLVFFARLE FT PCLIGIEACGSSHYWARELTRLGHSVRIIPPRFVKPYLKGNKNDANDAEAICEAVSRPG FT MRYVAVKSEAQQSMQAEHRVRARLLRDRTALSNEIRGMLGEFGLVLPVGLAALRRALPE FT ILSQQEQWDNRFIRLLCELAEELQILDDRLARYDRRLKQLAQDDDRIRRLQEISGIGPV FT TASALVAAVGNARQFKNGREMAAWLGLVPGQHSSGGKNRLGHISKRGDSYLRTLLIHGA FT RAVLNACGNKEDRRSQWLQSVAERRNRNVATVAMANKNARIAWAVLSREEEYRVM" FT misc_feature complement(162302..162565) FT /locus_tag="ROD_01351" FT /note="HMMPfam hit to PF02371, Transposase, FT IS116/IS110/IS902, score 2.7e-31" FT /inference="protein motif:PFAM:PF02371" FT repeat_region complement(163260..163272) FT /note="13 bp subterminal inverted repeat of ISCro5" FT CDS complement(163358..165748) FT /transl_table=11 FT /gene="gcd" FT /locus_tag="ROD_01361" FT /product="quinoprotein glucose dehydrogenase" FT /EC_number="1.1.5.2" FT /db_xref="GOA:D2THE1" FT /db_xref="InterPro:IPR001479" FT /db_xref="InterPro:IPR002372" FT /db_xref="InterPro:IPR011047" FT /db_xref="InterPro:IPR017511" FT /db_xref="InterPro:IPR018391" FT /db_xref="InterPro:IPR019551" FT /db_xref="InterPro:IPR019556" FT /db_xref="UniProtKB/TrEMBL:D2THE1" FT /protein_id="CBG86916.1" FT /translation="MAENNARSPRLLVTLTALFAALCGLYLLIGGGWLVAIGGSWYYPI FT AGLAMLGVAWLLWRSRRTALWLYAALLLATMIWGVWEVGFDFWALTPRSDILVFFGIWL FT ILPFVWHRLMVPSRGAVAALVAALLISGGILTWAGFNDPQEIDGALSAESTPAQAISPV FT ADGDWPAYGRNQEGQRYSPLKQINADNVHKLKEAWVFRTGDLKQPDDPGELTNEVTPIK FT VGDTLYLCTAHQRLFALEAATGKEKWHYDPELKTNESFQHVTCRGVSYHEATAGNASPE FT VIADCPRRIILPVNDGRLIALNAETGKLCETFGNKGVLNLQTNMPDQTPGLYEPTSPPI FT ITDKTIVIAGSVTDNFSTRETSGVIRGFDVNNGKLLWAFDPGAKDPNAIPSDEHTFTFN FT SPNSWAPAAYDAKLDLVYLPMGVSTPDIWGGHRTPEQERYASSILALNATTGKLAWSYQ FT TVHHDLWDMDLPAQPTLADITVNGQTVPVIYAPAKTGNIFVLDRRNGELVVPAPETPVP FT QGAAKGDYVSKTQPFSELSFRPKKDLSGADMWGATMFDQLVCRVMFHQLRYEGIFTPPS FT EQGTLVFPGNLGMFEWGGISVDPNRQVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGT FT GTEAGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEVVWKKRIGTPQDS FT MPFPMPVPLPFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSNGEKLWQARLPAGG FT QATPMTYEVNGKQYVVISAGGHGSFGTKMGDYIVAYALPDDEK" FT misc_feature complement(163472..163588) FT /gene="gcd" FT /locus_tag="ROD_01361" FT /note="HMMPfam hit to PF01011, Pyrrolo-quinoline quinone, FT score 2.2e-08" FT /inference="protein motif:PFAM:PF01011" FT misc_feature complement(163655..163771) FT /gene="gcd" FT /locus_tag="ROD_01361" FT /note="HMMPfam hit to PF01011, Pyrrolo-quinoline quinone, FT score 4.3e-06" FT /inference="protein motif:PFAM:PF01011" FT misc_feature complement(164180..164293) FT /gene="gcd" FT /locus_tag="ROD_01361" FT /note="HMMPfam hit to PF01011, Pyrrolo-quinoline quinone, FT score 0.00093" FT /inference="protein motif:PFAM:PF01011" FT misc_feature complement(164342..164449) FT /gene="gcd" FT /locus_tag="ROD_01361" FT /note="HMMPfam hit to PF01011, Pyrrolo-quinoline quinone, FT score 0.0021" FT /inference="protein motif:PFAM:PF01011" FT misc_feature complement(164474..164539) FT /note="PS00364 Bacterial quinoprotein dehydrogenases FT signature 2." FT /inference="protein motif:Prosite:PS00364" FT misc_feature complement(164576..164692) FT /gene="gcd" FT /locus_tag="ROD_01361" FT /note="HMMPfam hit to PF01011, Pyrrolo-quinoline quinone, FT score 0.0004" FT /inference="protein motif:PFAM:PF01011" FT misc_feature complement(164774..164887) FT /gene="gcd" FT /locus_tag="ROD_01361" FT /note="HMMPfam hit to PF01011, Pyrrolo-quinoline quinone, FT score 5.3e-05" FT /inference="protein motif:PFAM:PF01011" FT misc_feature complement(164963..165076) FT /gene="gcd" FT /locus_tag="ROD_01361" FT /note="HMMPfam hit to PF01011, Pyrrolo-quinoline quinone, FT score 3e-08" FT /inference="protein motif:PFAM:PF01011" FT misc_feature complement(165164..165250) FT /note="PS00363 Bacterial quinoprotein dehydrogenases FT signature 1." FT /inference="protein motif:Prosite:PS00363" FT misc_feature complement(join(165332..165391,165410..165463, FT 165506..165559,165578..165631,165644..165712)) FT /gene="gcd" FT /locus_tag="ROD_01361" FT /note="5 probable transmembrane helices predicted for FT ROD01361 by TMHMM2.0 at aa 13-35, 40-57, 64-81, 96-113 and FT 120-139" FT CDS 165954..166490 FT /transl_table=11 FT /gene="hpt" FT /locus_tag="ROD_01371" FT /product="hypoxanthine phosphoribosyltransferase" FT /EC_number="2.4.2.8" FT /db_xref="GOA:D2THE2" FT /db_xref="InterPro:IPR000836" FT /db_xref="InterPro:IPR005904" FT /db_xref="UniProtKB/TrEMBL:D2THE2" FT /protein_id="CBG86917.1" FT /translation="MKHTVEVMIPEAEIKARIAELGRQITQRYKDSGSEMVLVGLLRGS FT FMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDS FT GNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFVGFSIPDEFVVGYGIDYAQR FT YRHLPYVGKVVLLDE" FT misc_feature 165960..166400 FT /gene="hpt" FT /locus_tag="ROD_01371" FT /note="HMMPfam hit to PF00156, Phosphoribosyltransferase, FT score 9.1e-38" FT /inference="protein motif:PFAM:PF00156" FT misc_feature 166236..166274 FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT /inference="protein motif:Prosite:PS00103" FT CDS complement(166550..167212) FT /transl_table=11 FT /gene="can" FT /locus_tag="ROD_01381" FT /product="carbonic anhydrase 2" FT /EC_number="4.2.1.1" FT /db_xref="GOA:D2THE3" FT /db_xref="InterPro:IPR001765" FT /db_xref="InterPro:IPR015892" FT /db_xref="UniProtKB/TrEMBL:D2THE3" FT /protein_id="CBG86918.1" FT /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDS FT RVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHSGCGGI FT QAAVENPELGLINNWLLHIRDIWLKHSSLLGEMPEERRLDALYELNVMEQVYNLGHSTI FT MQSAWKRGQKVTIHGWAYSINDGLLRDLDVTATNRETLENRYHKGVSALGKKYINHE" FT misc_feature complement(166637..167125) FT /gene="can" FT /locus_tag="ROD_01381" FT /note="HMMPfam hit to PF00484, Carbonic anhydrase, score FT 2.5e-62" FT /inference="protein motif:PFAM:PF00484" FT misc_feature complement(166907..166969) FT /note="PS00705 Prokaryotic-type carbonic anhydrases FT signature 2." FT /inference="protein motif:Prosite:PS00705" FT misc_feature complement(167066..167089) FT /note="PS00704 Prokaryotic-type carbonic anhydrases FT signature 1." FT /inference="protein motif:Prosite:PS00704" FT CDS 167321..168247 FT /transl_table=11 FT /locus_tag="ROD_01391" FT /product="ABC transporter, ATP-binding protein" FT /db_xref="GOA:D2THE4" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2THE4" FT /protein_id="CBG86919.1" FT /translation="MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGKS FT TTIGIISSLVNKTSGRVCVFGYDLEKDIVNAKRQLGLVPQEFNFNPFETVQQIVVNQAG FT YYGVERKEAVARSEKYLKQLDLWEKRNERARMLSGGMKRRLMIARALMHEPKLLILDEP FT TAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKS FT LLSKLKSETFILDLAPRSPLPKLNGYQYRLVDTSTLEVEVLREQGINSVFSQLSEQGIQ FT VLSMRNKANRLEELFVSLVHEKQGDRA" FT misc_feature 167411..167956 FT /locus_tag="ROD_01391" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 3.5e-53" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 167432..167455 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 167729..167773 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT CDS 168244..169014 FT /transl_table=11 FT /locus_tag="ROD_01401" FT /product="ABC transporter, permease protein" FT /db_xref="GOA:D2THE5" FT /db_xref="InterPro:IPR000412" FT /db_xref="InterPro:IPR013525" FT /db_xref="InterPro:IPR013526" FT /db_xref="UniProtKB/TrEMBL:D2THE5" FT /protein_id="CBG86920.1" FT /translation="MMQLYWVALKSIWAKEINRFMRIWVQTLVPPVITMTLYFIIFGNL FT IGSRIGEMHGFSYMQFIVPGLIMMAVITNAYANVASSFFSAKFQRNIEELLVAPVPTHV FT IIAGFVGGGVARGLCVGVLVTAVSLFFVPFQVHSWLFVAMTLVLTAILFSLAGLLNAVF FT AKTFDDISLIPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGIH FT DVPLVTTFGVLLIFIIAFYLLCWTLIQRGRGLRS" FT misc_feature 168262..168900 FT /locus_tag="ROD_01401" FT /note="HMMPfam hit to PF01061, ABC-2 type transporter, FT score 2.3e-48" FT /inference="protein motif:PFAM:PF01061" FT misc_feature join(168301..168369,168427..168495,168553..168621, FT 168664..168732,168751..168819,168919..168987) FT /locus_tag="ROD_01401" FT /note="6 probable transmembrane helices predicted for FT ROD01401 by TMHMM2.0 at aa 20-42, 62-84, 104-126, 141-163, FT 170-192 and 226-248" FT misc_feature 168775..168888 FT /note="PS00890 ABC-2 type transport system integral FT membrane proteins signature." FT /inference="protein motif:Prosite:PS00890" FT CDS 169120..169560 FT /transl_table=11 FT /locus_tag="ROD_01411" FT /product="PTS system IIA component" FT /db_xref="GOA:D2THE6" FT /db_xref="InterPro:IPR004701" FT /db_xref="UniProtKB/TrEMBL:D2THE6" FT /protein_id="CBG86921.1" FT /translation="MLGWVITCHDDRAQELLERLEKRYGPLTQCRAVNYWQGLSANMLS FT RIMCDALHETDSGEGVIFLTDISGAAPYRVASLLSHKHPLCEVISGVSFSLLEQMLLLR FT ETMNSAAFRDRIVALGAPEVTSLWHQQQKNPPFVLLHDLYAC" FT misc_feature 169123..169470 FT /locus_tag="ROD_01411" FT /note="HMMPfam hit to PF03610, Phosphotransferase system, FT fructose subfamily IIA component, score 2e-26" FT /inference="protein motif:PFAM:PF03610" FT CDS 169646..170872 FT /transl_table=11 FT /locus_tag="ROD_01421" FT /product="putative polysaccharide deacetylase" FT /db_xref="GOA:D2THE7" FT /db_xref="InterPro:IPR002509" FT /db_xref="InterPro:IPR011330" FT /db_xref="UniProtKB/TrEMBL:D2THE7" FT /protein_id="CBG86922.1" FT /translation="MMKYLVLLLCWLSTAVSAALPARYMQTTENAAIWAQIGDKMITVG FT HVRSGQILSVIPVAADYYEFSFGFGTGFIDKQHLGPVQGKQRVADSLGDLNKPLSNQNL FT ITWQATPVYNAPNVGSAPFGVLSENLRYPIVSKLKDRLNQTWYQIRIADRLAWISALDA FT QEDRGMPVLTYHHILRDEENTRFRHTSTTTSVRAFSNQMTWLRDRGYATLTMAQLEGYV FT RNQLNLPAKAVAITFDDGLKSVSRYAYPVLKQYGMKATAFIITSRIKGRPQKWDPRSLQ FT FMSVSELKGIQDVFDLQSHTHFLHRVDGDRHPILLSRSEHNILFDFKRSRRVLSRFNSQ FT ALFLSYPFGGYNSKAVEAAKDAGFHLAVTTVKGKVKPGDNPFLLKRLYILRTDSLEMMS FT RLISNQPQG" FT sig_peptide 169646..169699 FT /locus_tag="ROD_01421" FT /note="Signal peptide predicted for ROD01421 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.945 between residues 18 and 19" FT misc_feature 170321..170746 FT /locus_tag="ROD_01421" FT /note="HMMPfam hit to PF01522, Polysaccharide deacetylase, FT score 6.1e-23" FT /inference="protein motif:PFAM:PF01522" FT misc_feature 170687..170773 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT CDS complement(170876..171256) FT /transl_table=11 FT /gene="panD" FT /locus_tag="ROD_01431" FT /product="aspartate L-decarboxylase" FT /EC_number="4.1.1.11" FT /db_xref="GOA:D2THE8" FT /db_xref="InterPro:IPR003190" FT /db_xref="InterPro:IPR009010" FT /db_xref="UniProtKB/TrEMBL:D2THE8" FT /protein_id="CBG86923.1" FT /translation="MIRKMLQGKLHRVKVTQADLHYEGSCAIDQDFLDAAGILENEAID FT IWNVSNGNRFSTYAIAAERGSRIISVNGAAAHCANVGDIVIIASFVTMTDEEARRWQPK FT VAYFEGDNEMKRTAKAIPVQVA" FT misc_feature complement(170909..171256) FT /gene="panD" FT /locus_tag="ROD_01431" FT /note="HMMPfam hit to PF02261, Aspartate decarboxylase, FT score 2e-84" FT /inference="protein motif:PFAM:PF02261" FT misc_feature complement(171110..171154) FT /note="PS00678 Trp-Asp (WD) repeats signature." FT /inference="protein motif:Prosite:PS00678" FT CDS complement(171400..172254) FT /transl_table=11 FT /gene="panC" FT /locus_tag="ROD_01441" FT /product="pantoate--beta-alanine ligase" FT /EC_number="6.3.2.1" FT /db_xref="GOA:D2THE9" FT /db_xref="InterPro:IPR003721" FT /db_xref="InterPro:IPR004821" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:D2THE9" FT /protein_id="CBG86924.1" FT /translation="MLIIETLPLLRQHIRRARQEGKRIALVPTMGNLHDGHLKLVDEAK FT ARADIVVVSIFVNPMQFDRPDDLARYPRTLQEDCEKLNKRKVDVVFAPAADQIYPQGTE FT GQTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLVGPDIACFGEKDFQQLALIRKMV FT ADMGYDIEIVGVPIIRAKDGLALSSRNGYLTAEQRKIAPGLYKAMCGIGEKLQAGEREL FT DELIALAEKELNEKGFRADDIQIRDADTLLELTESSQRAVILAAAWLGQARLIDNQIVT FT LTQ" FT misc_feature complement(171415..172251) FT /gene="panC" FT /locus_tag="ROD_01441" FT /note="HMMPfam hit to PF02569, Pantoate-beta-alanine FT ligase, score 5.8e-172" FT /inference="protein motif:PFAM:PF02569" FT CDS complement(172318..173109) FT /transl_table=11 FT /gene="panB" FT /locus_tag="ROD_01451" FT /product="3-methyl-2-oxobutanoate hydroxymethyltransferase" FT /EC_number="2.1.2.11" FT /db_xref="GOA:D2THF0" FT /db_xref="InterPro:IPR003700" FT /db_xref="InterPro:IPR015813" FT /db_xref="UniProtKB/TrEMBL:D2THF0" FT /protein_id="CBG86925.1" FT /translation="MKPTTLSLLQKCKQEKKRFATITAYDYSFAKLFAEEGINVMLVGD FT SLGMTVQGHDSTLPVTVEDIAYHTHAVRRGAPNCLLLADLPFMAYATPQQACENAAIVM FT RAGANMVKIEGGAWLVDTVRMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDAGQRLL FT DDALALEAAGAQLIVLECVPVALAKRVTDALSIPVIGIGAGNVTDGQILVMHDAFGITG FT GHIPKFAKNFLSEAGDMRAAVRQYIAEVESGLYPGEEHSFH" FT misc_feature complement(172333..173106) FT /gene="panB" FT /locus_tag="ROD_01451" FT /note="HMMPfam hit to PF02548, Ketopantoate FT hydroxymethyltransferase, score 2.8e-168" FT /inference="protein motif:PFAM:PF02548" FT CDS complement(173228..173707) FT /transl_table=11 FT /gene="folK" FT /locus_tag="ROD_01461" FT /product="2-amino-4-hydroxy-6-hydroxymethyldihydropteridi FT ne pyrophosphokinase" FT /EC_number="2.7.6.3" FT /db_xref="GOA:D2THF1" FT /db_xref="InterPro:IPR000550" FT /db_xref="UniProtKB/TrEMBL:D2THF1" FT /protein_id="CBG86926.1" FT /translation="MTPAYIAIGSNLASPLEQVNAAITALGDIPHSRIIAVSSFYRTPP FT LGPQDQPDYLNAAVALETDLEPEALLDHTQRIELQQGRVRKAERWGPRTLDLDIMLFGD FT RIINSERLTVPHYDMHNRGFMLWPLFEIAPDLRFPQGESLQHLLAGLGAGKPDRW" FT misc_feature complement(173309..173695) FT /gene="folK" FT /locus_tag="ROD_01461" FT /note="HMMPfam hit to PF01288, FT 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK, FT score 1e-74" FT /inference="protein motif:PFAM:PF01288" FT misc_feature complement(173408..173443) FT /note="PS00794 FT 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase FT signature." FT /inference="protein motif:Prosite:PS00794" FT CDS complement(173704..175122) FT /transl_table=11 FT /gene="pcnB" FT /locus_tag="ROD_01471" FT /product="poly(A) polymerase" FT /EC_number="2.7.7.19" FT /db_xref="GOA:D2THF2" FT /db_xref="InterPro:IPR002646" FT /db_xref="InterPro:IPR010206" FT /db_xref="UniProtKB/TrEMBL:D2THF2" FT /protein_id="CBG86927.1" FT /translation="MTLPRCTIFTRVANFCRKVLSREESEAEVAVARPHMTVIPREQHA FT ISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR FT NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGSIEE FT DAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRF FT AAKLDMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQSGYGYETYLKLREYSLFQP FT LFPTITRYFTENGDSPMERIIAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPLLEMAQKI FT AQESGLAYYDAFALAMNEVLDEACRSLAIPKRLTALTRDIWQLQLRMSRRQGKRAWKLM FT EHPKFRAAYDLLALRAEAENNPELQRLAQWWGEFQVSAPPEQKGMLNELDEDPAPRRRH FT RRPRKRSPRREGSA" FT misc_feature complement(174523..174918) FT /gene="pcnB" FT /locus_tag="ROD_01471" FT /note="HMMPfam hit to PF01743, Polynucleotide FT adenylyltransferase region, score 6.2e-74" FT /inference="protein motif:PFAM:PF01743" FT CDS complement(175207..176103) FT /transl_table=11 FT /gene="gluQ" FT /locus_tag="ROD_01481" FT /product="glutamyl-Q tRNA(Asp) synthetase" FT /EC_number="6.1.1.-" FT /db_xref="GOA:D2THF3" FT /db_xref="InterPro:IPR000924" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR020058" FT /db_xref="InterPro:IPR022380" FT /db_xref="UniProtKB/TrEMBL:D2THF3" FT /protein_id="CBG86928.1" FT /translation="MTDSHYIGRFAPSPSGELHFGSLIAALGSYLQARARNGIWRVRIE FT DIDPPREVPGAADAILRQLEHYGLHWNGEVLWQSRRHEAYREALAWLYDQGLSYYCTCT FT RARIQSIGGIYDGHCRELCNGPQQAAVRIKQQHPVTRFYDRLRGEIQADERLAREDFII FT HRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQQFGWTPPDYVHLPLAL FT NAHGAKLSKQNHAPALPPGDPRPVLLAALRFLGQHTEAEWQALPVEQLLRLAVTHWRLT FT AVPESAYVNPPFSNASC" FT misc_feature complement(175225..175245) FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT /inference="protein motif:Prosite:PS00092" FT misc_feature complement(175231..176079) FT /gene="gluQ" FT /locus_tag="ROD_01481" FT /note="HMMPfam hit to PF00749, Glutamyl/glutaminyl-tRNA FT synthetase, class Ic, score 7.7e-29" FT /inference="protein motif:PFAM:PF00749" FT CDS complement(176176..176649) FT /transl_table=11 FT /gene="dksA" FT /locus_tag="ROD_01491" FT /product="dosage-dependent dnaK suppressor protein" FT /db_xref="GOA:D2TI33" FT /db_xref="InterPro:IPR000962" FT /db_xref="InterPro:IPR012784" FT /db_xref="InterPro:IPR020458" FT /db_xref="UniProtKB/TrEMBL:D2TI33" FT /protein_id="CBG86929.1" FT /translation="MLRRSNMQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLSH FT FRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKK FT IEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG" FT misc_feature complement(176194..176406) FT /gene="dksA" FT /locus_tag="ROD_01491" FT /note="HMMPfam hit to PF01258, Zinc finger, DksA/TraR FT C4-type, score 3.4e-36" FT /inference="protein motif:PFAM:PF01258" FT misc_feature complement(176218..176292) FT /note="PS01102 Prokaryotic dksA/traR C4-type zinc finger." FT /inference="protein motif:Prosite:PS01102" FT CDS complement(176809..177513) FT /transl_table=11 FT /gene="sfsA" FT /locus_tag="ROD_01501" FT /product="sugar fermentation stimulation protein" FT /db_xref="InterPro:IPR005224" FT /db_xref="UniProtKB/TrEMBL:D2TI34" FT /protein_id="CBG86930.1" FT /translation="MQFTPPLQRATLVQRYKRFLADVITPEGVELTIHCPNTGAMTGCA FT DPGDTVWYSTSENTKRKYPHTWELTETRNGALICVNTLWANRLTKEAIEQGQVSELSGY FT SVLRSEVKYGAERSRIDFMLQEDLRPDCYIEVKSVTLAENEKGYFPDAITQRGQKHLRE FT LMNVAAEGKRAVIFFAVLHSAITRFSPARHIDAKYAQLLNEAQRKGVEVLAYKAELSAD FT SMTLMESLPVTL" FT misc_feature complement(176821..177477) FT /gene="sfsA" FT /locus_tag="ROD_01501" FT /note="HMMPfam hit to PF03749, Sugar fermentation FT stimulation protein, score 2e-106" FT /inference="protein motif:PFAM:PF03749" FT misc_feature complement(177382..177414) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(177526..178056) FT /transl_table=11 FT /gene="ligT" FT /locus_tag="ROD_01511" FT /product="2'-5' RNA ligase" FT /EC_number="6.5.1.-" FT /db_xref="GOA:D2TI35" FT /db_xref="InterPro:IPR004175" FT /db_xref="InterPro:IPR009097" FT /db_xref="InterPro:IPR014051" FT /db_xref="UniProtKB/TrEMBL:D2TI35" FT /protein_id="CBG86931.1" FT /translation="MSEPKRLFFAIELPADVREQIVAWRAAHFPGEAGRPVAADNLHLT FT LAFLGEVSADKQKALAALAGRIRQPGFTLTLDDAGQWLRSRVVWLGTRRSPRGLLQLAD FT MLRAQAARSGCYQSPRPFHPHITLLRDASHAVALPPPGFCWSFPVSEFVLYASSFTRGR FT TRYTPLQRWTLVK" FT misc_feature complement(177559..177789) FT /gene="ligT" FT /locus_tag="ROD_01511" FT /note="HMMPfam hit to PF02834, Phosphoesterase, HXTX, score FT 2.5e-10" FT /inference="protein motif:PFAM:PF02834" FT misc_feature complement(177790..178026) FT /gene="ligT" FT /locus_tag="ROD_01511" FT /note="HMMPfam hit to PF02834, Phosphoesterase, HXTX, score FT 2.6e-20" FT /inference="protein motif:PFAM:PF02834" FT CDS 178085..180559 FT /transl_table=11 FT /gene="hrpB" FT /locus_tag="ROD_01521" FT /product="ATP-dependent helicase" FT /EC_number="3.6.1.-" FT /db_xref="GOA:D2TI36" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR007502" FT /db_xref="InterPro:IPR010225" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR013689" FT /db_xref="InterPro:IPR014001" FT /db_xref="UniProtKB/TrEMBL:D2TI36" FT /protein_id="CBG86932.1" FT /translation="MLQCSAKNVNPPELFVTSLPVAAVLPELLAALDRSPQVLLSAPTG FT AGKSTWLPLQFLTHKGIEGRIILLEPRRLAARNVAQRLAEQLNEQPGGTVGYRMRAQSC FT VGPATRLEVVTEGVLTRMLQRNPELNGVGLVILDEFHERSLQADLALALLLDVQQGLRD FT DLKLLIMSATLDNERLRQCLPDAPAVVSEGRAYPVERRYHPLSPQLRFDEAVAVATAEL FT LRHEAGSLLLFLPGVGEIQRVREQLRDRVGSDVLLCPLYGALPLNEQRKAILPAPQGSR FT KVVLATNIAETSLTIEGIRLVVDCAQERVARFDARTGLTRLITQRVSQASMTQRAGRAG FT RLEPGICLHLIAKEQAERAAAQGEPEILQSDLSGLLMELLQWGCRDPAQLTWLDRPPAI FT HLQAAKRLLQMLGALEGDRLSAVGQKMAALGNDPRLAAMLVSASDPDEAATAARLAAIL FT EEPPRMGNTDLGVAFSRTQPGWQQRSQQLLKRLKAGRGEADASHIAPLLARAFADRIAR FT RRSQDGRYQLANGMGAALDADDALGRHEWLIAPLLLQGSASPDARILLALPLDIDALVQ FT RCPALLQQSDTVEWDEAQGTLKAWRRMRIGQLTVKVQPLAKPSEEELHLAMLNGIRDKG FT LGVLNWTPAAEQLRLRLQCAAKWLPEYDWPAVDEQTLLAALESWLLPHMSGVHSLKSLK FT SLDVHQALLGLLDYPRQQRLVSSLPTHYTVPTGSRIAIRYHEDNPPGLAVRMQEMFGEA FT STPTIAEGRVPLVLELLSPAQRPLQITRDLSAFWQGSYREVQKEMKGRYPKHVWPDDPA FT NTAPTRRTKKYS" FT misc_feature 178139..178627 FT /gene="hrpB" FT /locus_tag="ROD_01521" FT /note="HMMPfam hit to PF00270, DNA/RNA helicase, DEAD/DEAH FT box type, N-terminal, score 3.3e-07" FT /inference="protein motif:PFAM:PF00270" FT misc_feature 178208..178231 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 178829..179113 FT /gene="hrpB" FT /locus_tag="ROD_01521" FT /note="HMMPfam hit to PF00271, DNA/RNA helicase, FT C-terminal, score 7.1e-12" FT /inference="protein motif:PFAM:PF00271" FT misc_feature 179291..179470 FT /gene="hrpB" FT /locus_tag="ROD_01521" FT /note="HMMPfam hit to PF04408, Helicase-associated region, FT score 1.1e-09" FT /inference="protein motif:PFAM:PF04408" FT misc_feature 180119..180517 FT /gene="hrpB" FT /locus_tag="ROD_01521" FT /note="HMMPfam hit to PF08482, RNA helicase, ATP-dependent, FT HrpB type, C-terminal, score 3.7e-92" FT /inference="protein motif:PFAM:PF08482" FT CDS 180691..183225 FT /transl_table=11 FT /gene="mrcB" FT /locus_tag="ROD_01531" FT /product="penicillin-binding protein 1B [includes: FT penicillin-insensitive transglycosylase; penicillin FT sensitive transpeptidase]" FT /EC_number="2.4.1.129" FT /EC_number="3.4.-.-" FT /db_xref="GOA:D2TI37" FT /db_xref="InterPro:IPR001264" FT /db_xref="InterPro:IPR001460" FT /db_xref="InterPro:IPR011813" FT /db_xref="InterPro:IPR012338" FT /db_xref="UniProtKB/TrEMBL:D2TI37" FT /protein_id="CBG86933.1" FT /translation="MAGNDREPIGRKGKPSRPVKQKVSRRQLRDDEYDDEYDDDYEDEE FT PMPRKGKGKGRKPRGKRGWLWLLLKIAIVFLVLFAIYGVYLDQKIRSRIDGKVWQLPAA FT VYGRMVNLEPDMSVSKNEMVRLLEATQYRQVTKMTRPGEFTVQANSIEMIRRPFDFPDS FT KEGQVRARLTFDDGHLNTIVNMDNNRQFGFFRLDPRLITMLSSPNGEQRLFVPRSGFPD FT LLVDTLLATEDRHFYEHDGVSLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLTSER FT SYWRKANEAYMALLMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEE FT LSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLG FT VQPRGGVISPQPAFMQMVRQELQAKLGDKVKDLSGVKIFTTFDPVAQDAAEKAAVEGIP FT ALKKQRKLSDLETAIVVVDRFSGEVRAMVGGAEPQFAGYNRAMQARRSIGSLAKPATYL FT TALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDERRYSESGKVMLVDALTRSMNVPT FT VNLGMALGLPAVTDTWTKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAP FT LSALRSVIAEDGAVLYQSFPQAERAVPAQAAYMTLWTMQQVVQRGTGRQLGAKYPGLHL FT AGKTGTTNNNVDTWFAGIDGSQVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTA FT LTLTPPEDIVDMGVDYDGNFVCSGGMRTLPVWTSDPDALCQQGEMQQQQQQPSGNPFDQ FT SSQPQQQQQPPQEEKKDSDGVAGWIKDMFGGN" FT misc_feature 180880..180948 FT /gene="mrcB" FT /locus_tag="ROD_01531" FT /note="1 probable transmembrane helix predicted for FT ROD01531 by TMHMM2.0 at aa 64-86" FT misc_feature 181270..181785 FT /gene="mrcB" FT /locus_tag="ROD_01531" FT /note="HMMPfam hit to PF00912, Glycosyl transferase, family FT 51, score 1.7e-83" FT /inference="protein motif:PFAM:PF00912" FT misc_feature 182101..182931 FT /gene="mrcB" FT /locus_tag="ROD_01531" FT /note="HMMPfam hit to PF00905, Penicillin-binding protein, FT transpeptidase, score 1.2e-19" FT /inference="protein motif:PFAM:PF00905" FT misc_feature 182761..182784 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 183532..185787 FT /transl_table=11 FT /gene="fhuA" FT /locus_tag="ROD_01541" FT /product="ferrichrome-iron TonB-dependent receptor" FT /db_xref="GOA:D2TI38" FT /db_xref="InterPro:IPR000531" FT /db_xref="InterPro:IPR010105" FT /db_xref="InterPro:IPR010916" FT /db_xref="InterPro:IPR010917" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:D2TI38" FT /protein_id="CBG86934.1" FT /translation="MARLKTAQPNSSLRKLAVVVATAVSGMSVYAQAAVQPKEETITVT FT AAPAPQESAWGPAATIAARQSATATKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALS FT YTPGVAVGTRGASNTYDYLIIRGFAADGQSQNNYLNGLKMQGNFYNDAVIDPYMLERAE FT VMRGPVSVLYGKSNPGGLLNMVSKRPTTEPLKEVQFKMGTNSLFQTGFDFSDALNDDGV FT YSYRLTGLARSANAQQQGAEEQRYAIAPSFSWRPDDKTNFTFLSYFQNEPETGYYGWLP FT KEGTVSTLPNGKRLSTDFNEGANNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRYAQNKV FT AQKSVYGYGMCSDPMYSSNPDSSPCASVSQSEWGHTLTRQYVVDNEKLENFAVDTQLQS FT KFATGSVDHTLLTGVDFMRMRNDIDSWFGYVGSVTPSDIYNLDRSDFDFNSRDPDTSGP FT YQILNKQKQTGLYVQDQMQWDKVLVTLGGRYDWAKQDSLNRVSGTTDSREDKEFTWRGG FT INYLFDNGVTPYFSYSESFEPASQTGASGNIFAPSKGKQYEAGVKYVPNDRPIVITGAV FT YQLTKSNNLMSDPTPGSFFSIEGGEIRSRGVEIEAKAALSASVNVVGSYTYTDAEYTTD FT TRYKGNTPAQVPEHMASLWGDYTFFDGALSGLTLGAGGRYSGSSYGDPANSFKVGSYTV FT VDALVRYDLARLGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF" FT misc_feature 183532..183672 FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT /inference="protein motif:Prosite:PS00430" FT sig_peptide 183532..183630 FT /gene="fhuA" FT /locus_tag="ROD_01541" FT /note="Signal peptide predicted for ROD01541 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.983 between residues 33 and 34" FT misc_feature 183754..184074 FT /gene="fhuA" FT /locus_tag="ROD_01541" FT /note="HMMPfam hit to PF07715, TonB-dependent receptor, FT plug, score 1.7e-21" FT /inference="protein motif:PFAM:PF07715" FT misc_feature 185068..185784 FT /gene="fhuA" FT /locus_tag="ROD_01541" FT /note="HMMPfam hit to PF00593, TonB-dependent receptor, FT beta-barrel, score 6e-27" FT /inference="protein motif:PFAM:PF00593" FT misc_feature 185731..185784 FT /note="PS01156 TonB-dependent receptor proteins signature FT 2." FT /inference="protein motif:Prosite:PS01156" FT CDS 185835..186632 FT /transl_table=11 FT /gene="fhuC" FT /locus_tag="ROD_01551" FT /product="ferrichrome transport ATP-binding protein" FT /db_xref="GOA:D2TI39" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TI39" FT /protein_id="CBG86935.1" FT /translation="MQEQTHHPDTTFALRDVTFRVPGRTLLHPLSLTFPVGKVTGLIGH FT NGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRE FT LVAIGRYPWHGALGRFGIADREKVEEAITLVGLKPLAHRLVDSLSGGERQRAWIAMLVA FT QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVIAVLHDINMAARYCDYLVALR FT GGEMIAEGTPAALMRGETLEQIYGIPMGILPHPAGAAPVSFVY" FT misc_feature 185943..186506 FT /gene="fhuC" FT /locus_tag="ROD_01551" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 8.5e-59" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 185964..185987 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 186276..186320 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT CDS 186632..187522 FT /transl_table=11 FT /gene="fhuD" FT /locus_tag="ROD_01561" FT /product="ferrichrome-binding periplasmic protein" FT /db_xref="GOA:D2TI40" FT /db_xref="InterPro:IPR002491" FT /db_xref="InterPro:IPR008091" FT /db_xref="UniProtKB/TrEMBL:D2TI40" FT /protein_id="CBG86936.1" FT /translation="MSGLHHLTRRRLLTAMALSPLLWQMRPARAASIDLQRIVALEWLP FT VELLLALGVTPYGVADIPNYRLWVNEPPLPASVIDVGLRTEPNLELLTEMKPSFMVWSA FT GYGPSPEKLARIAPGRGFNFSDGKQPLAVARQSLLELGQLLNLAPAATRHLSEFDQFIA FT SRKPRFARRGERPLLLITQLDARHMLVFGPNCLFQAVLDEYGIRNAWQGETNFWGSTVV FT GIDRLAAYKDADVLCFDHGDNKEMDSLVRTPLWQAMPFVRAGRFQRVPAVWFYGATLSA FT MRFVRILDQALGGKA" FT sig_peptide 186632..186721 FT /gene="fhuD" FT /locus_tag="ROD_01561" FT /note="Signal peptide predicted for ROD01561 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 30 and 31" FT misc_feature 186734..187447 FT /gene="fhuD" FT /locus_tag="ROD_01561" FT /note="HMMPfam hit to PF01497, Periplasmic binding protein, FT score 4.6e-11" FT /inference="protein motif:PFAM:PF01497" FT misc_feature 187292..187321 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT /inference="protein motif:Prosite:PS00339" FT CDS 187519..189501 FT /transl_table=11 FT /gene="fhuB" FT /locus_tag="ROD_01571" FT /product="ferrichrome transport system permease protein" FT /db_xref="GOA:D2TI41" FT /db_xref="InterPro:IPR000522" FT /db_xref="UniProtKB/TrEMBL:D2TI41" FT /protein_id="CBG86937.1" FT /translation="MSKRIALLPASLLALLFFVAAGLSWTNLSVALPRSQWQQALWSPD FT IDSIGQMIFYYSLLPRLVISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGVT FT VTTLWAIPGMMAAQFAALAGACIVGALVFGVAWGKRLSPVTLILAGLVVSLYCGAVNQL FT LVLFHHDQLQSMFLWSTGTLTQTDWSGVQRLWPQLLGGVVLTLLLLRPLTLMGLDDGVA FT RNLGLALSLARLAALTLAIVLSALLVNAVGIIGFIGLFAPLLAKMLGARRLLARLMLAP FT LIGALILWLSDQIILWLSRVWMEVSTGSVTALIGAPLLLWLLPRLRSMSAPDMNVSNRV FT ATERRHVAGYALAGLIILLLGAWVALSLGRDVHGWSWASGALLDELMPWRWPRILAALI FT AGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGDAFGWLLPAGSLGA FT AATLLVIMIAAGRGGFSPQRMLLAGMALSTAFTMLLMMLQASGDPRMASVLTWISGSTY FT NASGEQALRTGIVMVILLALTPLCRRWLTILTLGGDTARAVGMALTPSRIGLLLLAASL FT TATATMTIGPLSFVGLMAPHIARMLGFRRTMPHIVMSGLVGGLLLVFADWCGRMVLFPY FT QIPAGILSTFIGAPYFIYLLRKQSR" FT sig_peptide 187519..187596 FT /gene="fhuB" FT /locus_tag="ROD_01571" FT /note="Signal peptide predicted for ROD01571 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.307 between residues 26 and 27" FT misc_feature join(187531..187599,187687..187755,187792..187851, FT 187861..187929,187948..188016,188230..188298, FT 188335..188391,188419..188487,188557..188625, FT 188683..188751,188788..188844,188854..188922, FT 188956..189015,189217..189285,189319..189387, FT 189415..189483) FT /gene="fhuB" FT /locus_tag="ROD_01571" FT /note="16 probable transmembrane helices predicted for FT ROD01571 by TMHMM2.0 at aa 5-27, 57-79, 92-111, 115-137, FT 144-166, 238-260, 273-291, 301-323, 347-369, 389-411, FT 424-442, 446-468, 480-499, 567-589, 601-623 and 633-655" FT misc_feature 187558..188493 FT /gene="fhuB" FT /locus_tag="ROD_01571" FT /note="HMMPfam hit to PF01032, Bacterial transport system FT permease protein, score 1.5e-42" FT /inference="protein motif:PFAM:PF01032" FT misc_feature 187864..187896 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 188674..189489 FT /gene="fhuB" FT /locus_tag="ROD_01571" FT /note="HMMPfam hit to PF01032, Bacterial transport system FT permease protein, score 1.3e-62" FT /inference="protein motif:PFAM:PF01032" FT misc_feature 188713..188745 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(189597..190877) FT /transl_table=11 FT /gene="hemL" FT /locus_tag="ROD_01581" FT /product="glutamate-1-semialdehyde 2,1-aminomutase" FT /EC_number="5.4.3.8" FT /db_xref="GOA:D2TI42" FT /db_xref="InterPro:IPR004639" FT /db_xref="InterPro:IPR005814" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015422" FT /db_xref="InterPro:IPR015424" FT /db_xref="UniProtKB/TrEMBL:D2TI42" FT /protein_id="CBG86938.1" FT /translation="MSKSENLFSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLY FT DVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAALVTELVP FT TMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQP FT NSPGVPADFAKHTLTCTYNDLDSVRAAFTQFPQEIACIIVEPVAGNMNCIPPLPEFLPG FT LRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVTPDLTCLGKIIGGGMPVGAFGGRRE FT VMEALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHDTLDELTTRLAEGLLEAAQ FT EAHIPLVVNHVGGMFGIFFTDAQSVTCYQDVMACDVERFKRFFHLMLEEGVYLAPSAFE FT AGFMSVAHSMEDINNTIDAARRVFAKL" FT misc_feature complement(189795..190775) FT /gene="hemL" FT /locus_tag="ROD_01581" FT /note="HMMPfam hit to PF00202, Aminotransferase class-III, FT score 1.6e-92" FT /inference="protein motif:PFAM:PF00202" FT misc_feature complement(189945..189977) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(190068..190178) FT /note="PS00600 Aminotransferases class-III FT pyridoxal-phosphate attachment site." FT /inference="protein motif:Prosite:PS00600" FT CDS 191046..192467 FT /transl_table=11 FT /gene="clcA" FT /locus_tag="ROD_01591" FT /product="H(+)/Cl(-) exchange transporter" FT /db_xref="GOA:D2TI43" FT /db_xref="InterPro:IPR001807" FT /db_xref="InterPro:IPR014743" FT /db_xref="InterPro:IPR023861" FT /db_xref="UniProtKB/TrEMBL:D2TI43" FT /protein_id="CBG86939.1" FT /translation="MKTETPSFEAQQIVRLRRRDQIRRLLERDKTPLAILCMAAVVGTI FT TGIVGVAFEKAVTWVQNMRIGALASVADHAWLLWPLAFILSGLLAMVGYFLVRKFAPEA FT GGSGIPEIEGALEELRPVRWWRVLPVKFIGGMGTLGAGMVLGREGPTVQLGGNIGRMVL FT DIFRMRSAEARHTLLATGAAAGLSAAFNAPLAGILFIIEEMRPQFRYNLISIKAVFTGV FT IMSSVVFRIFNGESPIIEIGKLSNAPVNTLWLYLVLGMIFGCVGPVFNKLVLRTQDMFQ FT RFHGGNITKWVLMGGVIGGLCGILGLIEPEAAGGGFNLIPIAAAGNFSVGLLLFIFIAR FT VITTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAVSFPHYQLEAGTFAIAGMGALMA FT ASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILARTLAKQEA FT EQAAKSQAAAAGENT" FT misc_feature join(191136..191204,191268..191336,191415..191483, FT 191580..191648,191673..191741,191799..191867, FT 191904..191972,192000..192068,192105..192173, FT 192216..192284,192297..192365) FT /gene="clcA" FT /locus_tag="ROD_01591" FT /note="11 probable transmembrane helices predicted for FT ROD01591 by TMHMM2.0 at aa 31-53, 75-97, 124-146, 179-201, FT 210-232, 252-274, 287-309, 319-341, 354-376, 391-413 and FT 418-440" FT misc_feature 191298..192365 FT /gene="clcA" FT /locus_tag="ROD_01591" FT /note="HMMPfam hit to PF00654, Chloride channel, core, FT score 8e-119" FT /inference="protein motif:PFAM:PF00654" FT misc_feature 191805..191837 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 192549..192893 FT /transl_table=11 FT /locus_tag="ROD_01601" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TI44" FT /db_xref="InterPro:IPR000361" FT /db_xref="InterPro:IPR016092" FT /db_xref="InterPro:IPR017870" FT /db_xref="InterPro:IPR023063" FT /db_xref="UniProtKB/TrEMBL:D2TI44" FT /protein_id="CBG86940.1" FT /translation="MSDDVALPLQFTEAAANKVKSLIADEDNPNLKLRVYITGGGCSGF FT QYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFVVTNPNAKS FT TCGCGSSFSI" FT misc_feature 192573..192848 FT /locus_tag="ROD_01601" FT /note="HMMPfam hit to PF01521, HesB/YadR/YfhF, score FT 2.6e-42" FT /inference="protein motif:PFAM:PF01521" FT misc_feature 192831..192884 FT /note="PS01152 Hypothetical hesB/yadR/yfhF family FT signature." FT /inference="protein motif:Prosite:PS01152" FT CDS complement(193014..193637) FT /transl_table=11 FT /locus_tag="ROD_01611" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR005115" FT /db_xref="UniProtKB/TrEMBL:D2TI45" FT /protein_id="CBG86941.1" FT /translation="MLVYWLDIIGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGT FT IRDMALDNGPVFWVKDPTDLVVAMVTSMLTILLVRQPRRLPKWMLPVLDAVGLAVFVGI FT GVNKAFIADSGPLVAICMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGSVHAT FT AFYTFAIPLETASMMGMVVTLCIRLAAIRWHLKLPTFALDESGR" FT misc_feature complement(193113..193370) FT /locus_tag="ROD_01611" FT /note="HMMPfam hit to PF03458, Protein of unknown function FT UPF0126, score 7.3e-32" FT /inference="protein motif:PFAM:PF03458" FT misc_feature complement(join(193122..193190,193224..193292, FT 193320..193376,193401..193454,193497..193550, FT 193569..193628)) FT /locus_tag="ROD_01611" FT /note="6 probable transmembrane helices predicted for FT ROD01611 by TMHMM2.0 at aa 4-23, 30-47, 62-79, 88-106, FT 116-138 and 150-172" FT misc_feature complement(193374..193631) FT /locus_tag="ROD_01611" FT /note="HMMPfam hit to PF03458, Protein of unknown function FT UPF0126, score 5.4e-39" FT /inference="protein motif:PFAM:PF03458" FT CDS complement(193672..194472) FT /transl_table=11 FT /gene="btuF" FT /locus_tag="ROD_01621" FT /product="vitamin B12-binding protein" FT /db_xref="GOA:D2TI46" FT /db_xref="InterPro:IPR002491" FT /db_xref="InterPro:IPR023544" FT /db_xref="UniProtKB/TrEMBL:D2TI46" FT /protein_id="CBG86942.1" FT /translation="MANSLSRALAALLLWLPVSLCAAPRVITLSPANTELAFAAGITPV FT AVSSYSDYPPAARDIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVNQLTSLGIRV FT MWVDAASIEQIAQTLRKLAAWSPQPEKAQHAARRLLDDYQQLKSEYADRSKKRLFLQFG FT INPPFTSAKGSIQNEVLELCGGENIFADSRVPWPQVSREQVLARAPQAIVVAGNAEETL FT KIKQYWGNQLKIPVIPLTSDWFERASPRIILAAKQLCTALSQVN" FT misc_feature complement(193744..194403) FT /gene="btuF" FT /locus_tag="ROD_01621" FT /note="HMMPfam hit to PF01497, Periplasmic binding protein, FT score 1.5e-46" FT /inference="protein motif:PFAM:PF01497" FT sig_peptide complement(194407..194472) FT /gene="btuF" FT /locus_tag="ROD_01621" FT /note="Signal peptide predicted for ROD01621 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.997 between residues 22 and 23" FT CDS complement(194465..195163) FT /transl_table=11 FT /gene="mtn" FT /locus_tag="ROD_01631" FT /product="MTA/SAH nucleosidase (5'-methylthioadenosine FT nucleosidase)" FT /EC_number="3.2.2.9" FT /db_xref="GOA:D2TI47" FT /db_xref="InterPro:IPR000845" FT /db_xref="InterPro:IPR010049" FT /db_xref="InterPro:IPR018017" FT /db_xref="UniProtKB/TrEMBL:D2TI47" FT /protein_id="CBG86943.1" FT /translation="MKIGIIGAMEEEVTLLRDKIENRQTFSRGGCEIYTGQLNGTDVAL FT LKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTA FT FGYEFGQLPGCPAGFKADEKLVAAAESCIAQLNLNAVRGLIVSGDAFINGSVGLTRIRH FT NFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMV FT ETLVQKLAHG" FT misc_feature complement(194486..195160) FT /gene="mtn" FT /locus_tag="ROD_01631" FT /note="HMMPfam hit to PF01048, Nucleoside phosphorylase, FT score 4.3e-110" FT /inference="protein motif:PFAM:PF01048" FT CDS 195244..196761 FT /transl_table=11 FT /gene="dgt" FT /locus_tag="ROD_01641" FT /product="deoxyguanosinetriphosphate triphosphohydrolase" FT /EC_number="3.1.5.1" FT /db_xref="GOA:D2TI48" FT /db_xref="InterPro:IPR003607" FT /db_xref="InterPro:IPR006261" FT /db_xref="InterPro:IPR006674" FT /db_xref="InterPro:IPR020779" FT /db_xref="InterPro:IPR023279" FT /db_xref="InterPro:IPR023293" FT /db_xref="UniProtKB/TrEMBL:D2TI48" FT /protein_id="CBG86944.1" FT /translation="MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPAI FT RRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEVLSRLKEMKLLAQYGLDELTG FT PFESIVEMSCLMHDIGNPPFGHFGEAAINDWFRQRLHPADAESQPLTEDRCKVASLRLR FT EGEESLNDLRRKVRQDLCHFEGNAQGIRLVQTLMRMNLTWAQVGGILKYTRPAWWRGET FT PATHNYLMKKPGYYLSEESYIARLRRELDLALYSRFPLTWIMEAADDISYCVADLEDAV FT EKRIFSAEQLYHHLQEAWGVHEKGSLFALVVENAWEKSRANTLSRSTEDQFFMYLRVNT FT LNKLVPYAAQRFIDNLEQIFAGTFNQALLEDGSSFSRLLKLYKNVAIKHVFSHPEVEQL FT ELQGYRVISGLLDIYRPLLSLPLADFSELVEKERLMRFPIESRLFQKLSTRHRLAYIEA FT VSKLAPDSLEYPVMEYYYRCRLIQDYISGMTDLYAWDEYRRLMAVEQ" FT misc_feature 195439..195801 FT /gene="dgt" FT /locus_tag="ROD_01641" FT /note="HMMPfam hit to PF01966, Metal-dependent FT phosphohydrolase, HD region, subdomain, score 2.8e-09" FT /inference="protein motif:PFAM:PF01966" FT CDS 196891..198306 FT /transl_table=11 FT /gene="htrA" FT /gene_synonym="degP" FT /locus_tag="ROD_01651" FT /product="protease Do precursor" FT /EC_number="3.4.21.-" FT /db_xref="GOA:D2TI49" FT /db_xref="InterPro:IPR001254" FT /db_xref="InterPro:IPR001478" FT /db_xref="InterPro:IPR001940" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR011782" FT /db_xref="UniProtKB/TrEMBL:D2TI49" FT /protein_id="CBG86945.1" FT /translation="MKKTTLAMSALALSLGLALSPLSATAAETASATTSQQMPSLAPML FT EKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGGQQ FT QKFMALGSGVIIDAAKGYVVTNNHVVDNATVIKVQLSDGRKFDAKVVGKDPRSDIALIQ FT IQDPKNLTAIKLADSDTLRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFI FT QTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTAQMVEFG FT QVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVMPNSSAAKAGIKAGDVITSLNGKP FT ISSFAALRAQVGTMPVGSKITLGLLRDGKPVTVNLELQQSSQNQVDSSSIFSGIEGAEM FT SNKGQDKGVVVNNVKANSPAAQIGLKKGDVIVGANQQRVKNIAELRKILDSKPSVLALN FT IQRGDSSIYLLMQ" FT sig_peptide 196891..196968 FT /gene="htrA" FT /gene_synonym="degP" FT /locus_tag="ROD_01651" FT /note="Signal peptide predicted for ROD01651 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.994 between residues 26 and 27" FT misc_feature 197194..197712 FT /gene="htrA" FT /gene_synonym="degP" FT /locus_tag="ROD_01651" FT /note="HMMPfam hit to PF00089, Peptidase S1 and S6, FT chymotrypsin/Hap, score 2.4e-34" FT /inference="protein motif:PFAM:PF00089" FT misc_feature 197716..197985 FT /gene="htrA" FT /gene_synonym="degP" FT /locus_tag="ROD_01651" FT /note="HMMPfam hit to PF00595, PDZ/DHR/GLGF, score 3.2e-22" FT /inference="protein motif:PFAM:PF00595" FT misc_feature 198034..198270 FT /gene="htrA" FT /gene_synonym="degP" FT /locus_tag="ROD_01651" FT /note="HMMPfam hit to PF00595, PDZ/DHR/GLGF, score 2e-16" FT /inference="protein motif:PFAM:PF00595" FT CDS 198456..199613 FT /transl_table=11 FT /gene="cdaR" FT /locus_tag="ROD_01661" FT /product="carbohydrate diacid regulator" FT /db_xref="InterPro:IPR008599" FT /db_xref="UniProtKB/TrEMBL:D2TI50" FT /protein_id="CBG86946.1" FT /translation="MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIG FT ELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPEHLRKY FT GELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQP FT RVVAVVEVDSGQLGVDSAMAELQQLQNALTTPERNNLIAIVSLTEMVVLKPALNQFGRW FT DAEDHRKRVEQLISRMKENGQLRFRVALGNYFTGPGSIARSYRTARTTMMVGKQRMPES FT RSYFYQDLMLPVLLDSLRGGWQANELARPLTRLKAMDNNGLLRRTLTAWFRHNVQPLAT FT SKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEQR" FT misc_feature 198471..199385 FT /gene="cdaR" FT /locus_tag="ROD_01661" FT /note="HMMPfam hit to PF05651, Putative sugar diacid FT recognition, score 1e-170" FT /inference="protein motif:PFAM:PF05651" FT misc_feature 199386..199451 FT /note="Predicted helix-turn-helix motif with score FT 1014.000, SD 2.64 at aa 311-332, sequence FT LTRLKAMDNNGLLRRTLTAWFR" FT CDS 199618..199896 FT /transl_table=11 FT /locus_tag="ROD_01671" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TI51" FT /protein_id="CBG86947.1" FT /translation="MFVDGAFCLMALRLSGLGTENVFVDGGFCLMALRLSDLGTENVFV FT DGVFCLMALRLSGLRTVMFCRPDKTLASPSGNGEQAWGDSQTSERKR" FT CDS complement(199923..200309) FT /transl_table=11 FT /locus_tag="ROD_01681" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR020911" FT /db_xref="UniProtKB/TrEMBL:D2TI52" FT /protein_id="CBG86948.1" FT /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDRGEFFAKS FT VKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYVIDELDQICQRDRSEVDLKRKILDDL FT RHLESVVANKITEIEADLEKLTRK" FT CDS complement(200420..201244) FT /transl_table=11 FT /gene="dapD" FT /locus_tag="ROD_01691" FT /product="2,3,4,5-tetrahydropyridine-2-carboxylate FT N-succinyltransferase" FT /EC_number="2.3.1.117" FT /db_xref="GOA:D2TI53" FT /db_xref="InterPro:IPR001451" FT /db_xref="InterPro:IPR005664" FT /db_xref="InterPro:IPR011004" FT /db_xref="InterPro:IPR018357" FT /db_xref="InterPro:IPR023180" FT /db_xref="UniProtKB/TrEMBL:D2TI53" FT /protein_id="CBG86949.1" FT /translation="MQQLQNVIETAFERRAEITPANVDTVTREAVNQVISLLDSGALRV FT AEKIDGQWVTHQWLKKAVLLSFRINDNQVIDGAESRYFDKVPMKFADYDEARFQKEGFR FT VVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVG FT IGGVLEPLQANPTIIEDHCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEV FT HYGRVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID" FT misc_feature complement(200597..200650) FT /gene="dapD" FT /locus_tag="ROD_01691" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 2.7" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(200651..200704) FT /gene="dapD" FT /locus_tag="ROD_01691" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 2" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(200747..200800) FT /gene="dapD" FT /locus_tag="ROD_01691" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.82" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(200759..200845) FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT /inference="protein motif:Prosite:PS00101" FT misc_feature complement(200801..200854) FT /gene="dapD" FT /locus_tag="ROD_01691" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 30" FT /inference="protein motif:PFAM:PF00132" FT CDS complement(201275..203947) FT /transl_table=11 FT /gene="glnD" FT /locus_tag="ROD_01701" FT /product="[protein-PII] uridylyltransferase" FT /EC_number="2.7.7.59" FT /db_xref="GOA:D2TI54" FT /db_xref="InterPro:IPR002912" FT /db_xref="InterPro:IPR002934" FT /db_xref="InterPro:IPR003607" FT /db_xref="InterPro:IPR006674" FT /db_xref="InterPro:IPR010043" FT /db_xref="InterPro:IPR013546" FT /db_xref="InterPro:IPR023279" FT /db_xref="UniProtKB/TrEMBL:D2TI54" FT /protein_id="CBG86950.1" FT /translation="MNTLPEQHANTALPTLPGQPQNPGAWPRDDLTISGIKSHIDTFQQ FT WLGDAFDGGVSAEQLIEARTEFIDQLLQRLWIEAGFGQIADLALVAVGGYGRGELHPLS FT DIDLLILSRKKLPDAQAQKVGELLTLLWDVRLEVGHSVRTLEECLLEGLSDLTVATNLI FT ETRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSS FT PGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTQAERAELNECLHILWRIRFALHLVVS FT RYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLFDEAILA FT LPADEKPRPIDDDFQLRGTLIDLRHDDLFIREPEAILRMFYTMVRNSAITGIYSTTLRH FT LRHARRHLNQPLCYIPEARSLFLSMLRHPGAISRGLLPMHRHSVLWAYMPQWSHIVGQM FT QFDLFHAYTVDEHTIRVMLKLESFAREETRQRHPLCVDLWPRLRQPELIFIAALFHDIA FT KGRGGDHSVLGAQDVLKFAELHGLNSRETQLVAWLVRQHLLMSVTAQRRDIQDPEVIKQ FT FAEEVQTEHRLRFLVCLTVADICATNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDM FT RERVRHHQLQALALLRMDNIDEAALHHIWSRCRANYFVRHSPNQLAWHARHLLQHDLSK FT PLILLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFI FT VLEPDGSPLSSDRHEAIRFGLEQAITQRSWQPPQPRRQPAKLRHFTVDTEVTFLPTHTD FT RKSFLELIALDQPGLLARVGQIFADLGISLHGARITTIGERVEDLFIIATADRRALNNE FT LQQEVHQRLTEALNPNDKG" FT misc_feature complement(201317..201505) FT /gene="glnD" FT /locus_tag="ROD_01701" FT /note="HMMPfam hit to PF01842, Amino acid-binding ACT, FT score 8.4e-10" FT /inference="protein motif:PFAM:PF01842" FT misc_feature complement(201632..201826) FT /gene="glnD" FT /locus_tag="ROD_01701" FT /note="HMMPfam hit to PF01842, Amino acid-binding ACT, FT score 3.2e-06" FT /inference="protein motif:PFAM:PF01842" FT misc_feature complement(202142..202546) FT /gene="glnD" FT /locus_tag="ROD_01701" FT /note="HMMPfam hit to PF01966, Metal-dependent FT phosphohydrolase, HD region, subdomain, score 2.5e-21" FT /inference="protein motif:PFAM:PF01966" FT misc_feature complement(202748..203377) FT /gene="glnD" FT /locus_tag="ROD_01701" FT /note="HMMPfam hit to PF08335, GlnD FT PII-uridylyltransferase, score 4.6e-117" FT /inference="protein motif:PFAM:PF08335" FT misc_feature complement(203441..203728) FT /gene="glnD" FT /locus_tag="ROD_01701" FT /note="HMMPfam hit to PF01909, DNA polymerase, beta-like FT region, score 1.5e-12" FT /inference="protein motif:PFAM:PF01909" FT CDS complement(204056..204850) FT /transl_table=11 FT /gene="map" FT /locus_tag="ROD_01711" FT /product="methionine aminopeptidase" FT /db_xref="GOA:D2TI55" FT /db_xref="InterPro:IPR000994" FT /db_xref="InterPro:IPR001714" FT /db_xref="InterPro:IPR002467" FT /db_xref="UniProtKB/TrEMBL:D2TI55" FT /protein_id="CBG86951.1" FT /translation="MAISIKTPEEIEKMRVAGRLAAEVLEMIEPYIKPGVSTGELDRLC FT NDYIVNEQHAISACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDD FT YHGDTSKMFIVGKPTILGERLCRVTQESLYLALRMVKPGIRLRTLGAAIQKYAEGEGFS FT VVREYCGHGIGRGFHEEPQVLHYDADDGGVVLQPGMTFTIEPMLNAGDYRIRTMKDGWT FT VKTKDRSLSAQYEHTIVVTENGCEILTLRKDDAIPAIITHDE" FT misc_feature complement(204101..204817) FT /gene="map" FT /locus_tag="ROD_01711" FT /note="HMMPfam hit to PF00557, Peptidase M24, catalytic FT core, score 2.5e-106" FT /inference="protein motif:PFAM:PF00557" FT misc_feature complement(204293..204349) FT /note="PS00680 Methionine aminopeptidase subfamily 1 FT signature." FT /inference="protein motif:Prosite:PS00680" FT misc_RNA 205134..205271 FT /note="Rfam:RF00127;t44;Score=110.41;positions 1 to 60" FT CDS 205298..206023 FT /transl_table=11 FT /gene="rpsB" FT /locus_tag="ROD_01721" FT /product="30S ribosomal protein S2" FT /db_xref="GOA:D2TI56" FT /db_xref="InterPro:IPR001865" FT /db_xref="InterPro:IPR005706" FT /db_xref="InterPro:IPR018130" FT /db_xref="InterPro:IPR023591" FT /db_xref="UniProtKB/TrEMBL:D2TI56" FT /protein_id="CBG86952.1" FT /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEK FT TVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKEAANSCDQFFVNHRWLGGMLTNW FT KTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFV FT IDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVSLYLGAVAATVR FT EGRSQDLASQAEESFVEAE" FT misc_feature 205313..205348 FT /note="PS00962 Ribosomal protein S2 signature 1." FT /inference="protein motif:Prosite:PS00962" FT misc_feature 205322..205972 FT /gene="rpsB" FT /locus_tag="ROD_01721" FT /note="HMMPfam hit to PF00318, Ribosomal protein S2, score FT 6.5e-131" FT /inference="protein motif:PFAM:PF00318" FT misc_feature 205769..205843 FT /note="PS00963 Ribosomal protein S2 signature 2." FT /inference="protein motif:Prosite:PS00963" FT CDS 206159..207010 FT /transl_table=11 FT /gene="tsf" FT /locus_tag="ROD_01731" FT /product="elongation factor Ts" FT /db_xref="GOA:D2TI57" FT /db_xref="InterPro:IPR000449" FT /db_xref="InterPro:IPR001816" FT /db_xref="InterPro:IPR009060" FT /db_xref="InterPro:IPR014039" FT /db_xref="InterPro:IPR018101" FT /db_xref="UniProtKB/TrEMBL:D2TI57" FT /protein_id="CBG86953.1" FT /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSG FT AIKAAKKAGNVAADGVIKTKIEGNTAFILEVNCQTDFVAKDGGFQAFADKVLDAAVAGK FT ITDVEVLKAQFEEERVALVAKIGENINIRRIASLEGDVLGSYQHGARIGVLVAAKGADE FT ELVKQLAMHVAASKPEFVKPEDVSADVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKK FT FTGEVSLTGQPFVMDPSKSVGQLLKEHNADVTGFIRFEVGEGIEKVETDFAAEVAAMSK FT QS" FT misc_feature 206168..206290 FT /gene="tsf" FT /locus_tag="ROD_01731" FT /note="HMMPfam hit to PF00627, FT Ubiquitin-associated/translation elongation factor EF1B, FT N-terminal, score 6.2e-13" FT /inference="protein motif:PFAM:PF00627" FT misc_feature 206192..206239 FT /note="PS01126 Elongation factor Ts signature 1." FT /inference="protein motif:Prosite:PS01126" FT misc_feature 206327..206947 FT /gene="tsf" FT /locus_tag="ROD_01731" FT /note="HMMPfam hit to PF00889, Translation elongation FT factor EFTs/EF1B, dimerisation, score 2.8e-107" FT /inference="protein motif:PFAM:PF00889" FT misc_feature 206381..206413 FT /note="PS01127 Elongation factor Ts signature 2." FT /inference="protein motif:Prosite:PS01127" FT CDS 207163..207888 FT /transl_table=11 FT /gene="pyrH" FT /locus_tag="ROD_01741" FT /product="uridylate kinase" FT /EC_number="2.7.4.-" FT /db_xref="GOA:D2TI58" FT /db_xref="InterPro:IPR001048" FT /db_xref="InterPro:IPR011817" FT /db_xref="InterPro:IPR015963" FT /db_xref="UniProtKB/TrEMBL:D2TI58" FT /protein_id="CBG86954.1" FT /translation="MATNAKPVYKRILLKLSGEALQGSEGFGIDASILDRMAQEIKELV FT ELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARL FT MSAIPLNGVCDNYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADVVLK FT ATKVDGVFTTDPAKDPSATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNK FT PGALRRVVMGEKEGTLITE" FT misc_feature 207190..207819 FT /gene="pyrH" FT /locus_tag="ROD_01741" FT /note="HMMPfam hit to PF00696, FT Aspartate/glutamate/uridylate kinase, score 2.6e-63" FT /inference="protein motif:PFAM:PF00696" FT CDS 208189..208746 FT /transl_table=11 FT /gene="frr" FT /locus_tag="ROD_01751" FT /product="ribosome recycling factor" FT /db_xref="GOA:D2TI59" FT /db_xref="InterPro:IPR002661" FT /db_xref="InterPro:IPR023584" FT /db_xref="UniProtKB/TrEMBL:D2TI59" FT /protein_id="CBG86955.1" FT /translation="MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYY FT GTPTPLPQLASVTVEDSRTLKINVFDRSLSAAVEKAIMASDLGLNPSSAGSDIRVPLPP FT LTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKEKEISEDDDRRSQDDIQKL FT TDAAIKKVEAALADKEAELMQF" FT misc_feature 208243..208737 FT /gene="frr" FT /locus_tag="ROD_01751" FT /note="HMMPfam hit to PF01765, Ribosome recycling factor, FT score 1.9e-101" FT /inference="protein motif:PFAM:PF01765" FT CDS 208854..210050 FT /transl_table=11 FT /gene="dxr" FT /locus_tag="ROD_01761" FT /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" FT /EC_number="1.1.1.267" FT /db_xref="GOA:D2TI60" FT /db_xref="InterPro:IPR003821" FT /db_xref="InterPro:IPR013512" FT /db_xref="InterPro:IPR013644" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TI60" FT /protein_id="CBG86956.1" FT /translation="MKHITILGSTGSIGCSTLDVVRQNPGDYRVVALVAGKNVTRMVEQ FT CLEFSPRYAVMDDEASAKLLKNTLQQHGSRTDVLSGQQAACEMAALDEVDQVMAAIVGA FT AGLLPTLAAIRAGKTILLANKESLVTCGRLFMEAVKHSKARLLPVDSEHNAIFQSMPQP FT IQHNLGYADLEQNGVMSVLLTGSGGPFRETPLRDLASMTPDRACRHPNWSMGRKISVDS FT ATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIA FT HTMAWPNRVTSGVKPLDFCKLSALTFSAPDYQRYPCLKLAMEAFEQGQAATTALNAANE FT IVVAAFLAEDIRFTDIADLNLGVLEQMELQEPQSVDDVLRVDAIAREVARKQVMRLAS" FT misc_feature 208863..209249 FT /gene="dxr" FT /locus_tag="ROD_01761" FT /note="HMMPfam hit to PF02670, 1-deoxy-D-xylulose FT 5-phosphate reductoisomerase, N-terminal, score 2.9e-80" FT /inference="protein motif:PFAM:PF02670" FT misc_feature 208866..208898 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 209187..209210 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 209289..209570 FT /gene="dxr" FT /locus_tag="ROD_01761" FT /note="HMMPfam hit to PF08436, 1-deoxy-D-xylulose FT 5-phosphate reductoisomerase, C-terminal, score 5.6e-59" FT /inference="protein motif:PFAM:PF08436" FT CDS 210239..210997 FT /transl_table=11 FT /gene="uppS" FT /locus_tag="ROD_01771" FT /product="undecaprenyl pyrophosphate synthetase" FT /EC_number="2.5.1.31" FT /db_xref="GOA:D2TI61" FT /db_xref="InterPro:IPR001441" FT /db_xref="InterPro:IPR018520" FT /db_xref="UniProtKB/TrEMBL:D2TI61" FT /protein_id="CBG86957.1" FT /translation="MLSATQPVSENLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAG FT AKSVRRAVSFAANNGIDALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNV FT RLRIIGDTSRFNSRLQERIRKSEALTARNTGLTLNIAANYGGRWDIVQGVRKLAEQVQE FT GVLRPDQIDEEMLNQQICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPD FT FDEQDFEGALHAFANRERRFGGTEPGDDKA" FT misc_feature 210305..210970 FT /gene="uppS" FT /locus_tag="ROD_01771" FT /note="HMMPfam hit to PF01255, FT Di-trans-poly-cis-decaprenylcistransferase, score 1.7e-150" FT /inference="protein motif:PFAM:PF01255" FT misc_feature 210803..210856 FT /note="PS01066 Undecaprenyl pyrophosphate synthetase family FT signature." FT /inference="protein motif:Prosite:PS01066" FT CDS 211010..211867 FT /transl_table=11 FT /gene="cdsA" FT /locus_tag="ROD_01781" FT /product="phosphatidate cytidylyltransferase" FT /EC_number="2.7.7.41" FT /db_xref="GOA:D2TI62" FT /db_xref="InterPro:IPR000374" FT /db_xref="UniProtKB/TrEMBL:D2TI62" FT /protein_id="CBG86958.1" FT /translation="MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLFVCMLAAWEWGQ FT LSGFATRTQRVWLAVLCGLLLALMLFLLPEYHHNIRQPLVEVSLWASLGWWGVALLLVF FT FYPGSAAIWRNSKTLRIIFGVLTIVPFFWGMLALRAWHYDDNHYSGALWLLYVMILVWG FT ADSGAYMFGKLFGKHKLAPKVSPGKTWQGFFGGLATAAVISWGYSMWANLDVAPVTLLI FT CSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLV FT FKTL" FT sig_peptide 211010..211096 FT /gene="cdsA" FT /locus_tag="ROD_01781" FT /note="Signal peptide predicted for ROD01781 by SignalP 2.0 FT HMM (Signal peptide probability 0.954) with cleavage site FT probability 0.751 between residues 29 and 30" FT misc_feature 211016..211852 FT /gene="cdsA" FT /locus_tag="ROD_01781" FT /note="HMMPfam hit to PF01148, Phosphatidate FT cytidylyltransferase, score 1.4e-83" FT /inference="protein motif:PFAM:PF01148" FT misc_feature join(211028..211132,211175..211231,211268..211327, FT 211370..211438,211457..211525,211583..211642, FT 211661..211729,211787..211855) FT /gene="cdsA" FT /locus_tag="ROD_01781" FT /note="8 probable transmembrane helices predicted for FT ROD01781 by TMHMM2.0 at aa 7-41, 56-74, 87-106, 121-143, FT 150-172, 192-211, 218-240 and 260-282" FT misc_feature 211724..211804 FT /note="PS01315 Phosphatidate cytidylyltransferase FT signature." FT /inference="protein motif:Prosite:PS01315" FT CDS 211879..213231 FT /transl_table=11 FT /gene="ecfE" FT /locus_tag="ROD_01791" FT /product="protease" FT /EC_number="3.4.24.-" FT /db_xref="GOA:D2TI63" FT /db_xref="InterPro:IPR001478" FT /db_xref="InterPro:IPR004387" FT /db_xref="InterPro:IPR008915" FT /db_xref="UniProtKB/TrEMBL:D2TI63" FT /protein_id="CBG86959.1" FT /translation="MLSILWNLAAFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFG FT KALWRRTDRSGTEYVIALIPLGGYVKMLDERAEPVIPELRHHAFNNKTVGQRAAIIAAG FT PVANFLFAIFAYWLVFIIGVPGVRPVVGEITPNSIAAEAQITPGTELKAVDGIETPDWD FT AVRLQLVAKIGDEQTTLSVAPFGSNQRQEKTLDLRHWAFEPDKEDPVSSLGIRPRGPQI FT EPVLSEVQAQSAASKAGLQAGDRIVKVDGQPLTKWVNFVTLVRDNPGKPLALEIERQGS FT ALSLTLIPETKPGNGKAEGFAGVVPKIIPLPDEYKTVRQYGPFSAIAQATEKTWQLMKL FT TVSMLGKLITGDVKLNNLSGPISIAQGAGMSAEFGVIYYLMFLALISVNLGIINLFPLP FT VLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSILLVLLMGLALFNDFSRL" FT misc_feature join(211882..211941,212170..212238,213004..213072, FT 213154..213213) FT /gene="ecfE" FT /locus_tag="ROD_01791" FT /note="4 probable transmembrane helices predicted for FT ROD01791 by TMHMM2.0 at aa 2-21, 98-120, 376-398 and FT 426-445" FT misc_feature 211906..213216 FT /gene="ecfE" FT /locus_tag="ROD_01791" FT /note="HMMPfam hit to PF02163, Peptidase M50, score FT 3.3e-95" FT /inference="protein motif:PFAM:PF02163" FT misc_feature 211933..211962 FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT /inference="protein motif:Prosite:PS00142" FT misc_feature 212485..212709 FT /gene="ecfE" FT /locus_tag="ROD_01791" FT /note="HMMPfam hit to PF00595, PDZ/DHR/GLGF, score 2.5e-13" FT /inference="protein motif:PFAM:PF00595" FT CDS 213263..215692 FT /transl_table=11 FT /locus_tag="ROD_01801" FT /product="outer membrane protein assembly factor" FT /db_xref="GOA:D2TI64" FT /db_xref="InterPro:IPR000184" FT /db_xref="InterPro:IPR010827" FT /db_xref="InterPro:IPR016474" FT /db_xref="InterPro:IPR023707" FT /db_xref="UniProtKB/TrEMBL:D2TI64" FT /protein_id="CBG86960.1" FT /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLS FT MPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKS FT VKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRV FT DLKLVFQEGVSAKIQQINIVGNHAFSTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGD FT LETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNVTEGDQYTLSGVQVSGNLAGHS FT AEIESLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSQPEINDADKTVKLRVN FT VDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVD FT TDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGYAVGI FT NGTKNDYQTYSELSITNPYFTVDGVSLGGRIFYNDFRADDADLSDYTNKSYGTDVTLGF FT PINEYNTLRAGLGYVHNRLSNMQPQLAMWRYLNSMGQYPDPTNDSNSFTADDFTFNYGW FT TYNKLDRGFFPTEGTRINLNGKVTIPGSDNEYYKATLDTATYVPIDDDHKWVVLGRTRW FT GYGDGIGSKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYLPASSRHDGDDDYDNECAST FT NTAPCQSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWDMGTVWDTNWDSSGY FT SGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW" FT sig_peptide 213263..213322 FT /locus_tag="ROD_01801" FT /note="Signal peptide predicted for ROD01801 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.980 between residues 20 and 21" FT misc_feature 213332..213535 FT /locus_tag="ROD_01801" FT /note="HMMPfam hit to PF07244, Surface antigen variable FT number, score 3.2e-11" FT /inference="protein motif:PFAM:PF07244" FT misc_feature 213536..213778 FT /locus_tag="ROD_01801" FT /note="HMMPfam hit to PF07244, Surface antigen variable FT number, score 2.6e-16" FT /inference="protein motif:PFAM:PF07244" FT misc_feature 213785..214051 FT /locus_tag="ROD_01801" FT /note="HMMPfam hit to PF07244, Surface antigen variable FT number, score 9.1e-19" FT /inference="protein motif:PFAM:PF07244" FT misc_feature 214058..214294 FT /locus_tag="ROD_01801" FT /note="HMMPfam hit to PF07244, Surface antigen variable FT number, score 4.7e-16" FT /inference="protein motif:PFAM:PF07244" FT misc_feature 214301..214525 FT /locus_tag="ROD_01801" FT /note="HMMPfam hit to PF07244, Surface antigen variable FT number, score 1.1e-21" FT /inference="protein motif:PFAM:PF07244" FT misc_feature 214604..215689 FT /locus_tag="ROD_01801" FT /note="HMMPfam hit to PF01103, Bacterial surface antigen FT (D15), score 1.7e-76" FT /inference="protein motif:PFAM:PF01103" FT CDS 215815..216300 FT /transl_table=11 FT /gene="skp" FT /locus_tag="ROD_01811" FT /product="chaperone protein" FT /db_xref="GOA:D2TI65" FT /db_xref="InterPro:IPR005632" FT /db_xref="InterPro:IPR024930" FT /db_xref="UniProtKB/TrEMBL:D2TI65" FT /protein_id="CBG86961.1" FT /translation="MKKWLLAAGLGLAMVTSAQAADKIAIVNMGSLFQQVAQKTGVSKT FT LENEFKSRASELQRMETDLQSKMQRLQSMKAGSERTKLEKDVMAQRQTFSQKAQAFEQD FT RARRSNEERGKLVTRIQSAVKSVASSQSIDLVVDANTVAYNSSDVKDITADVLKQVK" FT sig_peptide 215815..215874 FT /gene="skp" FT /locus_tag="ROD_01811" FT /note="Signal peptide predicted for ROD01811 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 20 and 21" FT misc_feature 215833..216297 FT /gene="skp" FT /locus_tag="ROD_01811" FT /note="HMMPfam hit to PF03938, Outer membrane chaperone Skp FT (OmpH), score 1.2e-37" FT /inference="protein motif:PFAM:PF03938" FT CDS 216304..217329 FT /transl_table=11 FT /gene="lpxD" FT /locus_tag="ROD_01821" FT /product="UDP-3-O-[3-hydroxymyristoyl] glucosamine FT N-acyltransferase" FT /note="unknown EC_number=2.3.1.-." FT /db_xref="GOA:D2TI66" FT /db_xref="InterPro:IPR001451" FT /db_xref="InterPro:IPR007691" FT /db_xref="InterPro:IPR011004" FT /db_xref="InterPro:IPR018357" FT /db_xref="InterPro:IPR020573" FT /db_xref="UniProtKB/TrEMBL:D2TI66" FT /protein_id="CBG86962.1" FT /translation="MPSIRLSDLAEQLDAELHGDGDIVITGVASMQSAQTGHITFMVNP FT KYREHLALCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAKDIAPSA FT VVDATATLGNHVSIGANAVIESGVELGDNVVIGAGCFVGKNTKIGAGSRLWANVTVYHD FT IQIGENCLIQSGTVIGADGFGYANDRGNWVKIPQLGRVIIGDRVEIGACTTIDRGALDD FT TVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICD FT KVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKAIERKVNQQ FT D" FT misc_feature 216364..216573 FT /gene="lpxD" FT /locus_tag="ROD_01821" FT /note="HMMPfam hit to PF04613, UDP-3-O-[3-hydroxymyristoyl] FT glucosamine N-acyltransferase, LpxD, score 3.3e-33" FT /inference="protein motif:PFAM:PF04613" FT misc_feature 216601..216687 FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT /inference="protein motif:Prosite:PS00101" FT misc_feature 216628..216681 FT /gene="lpxD" FT /locus_tag="ROD_01821" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.14" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 216682..216735 FT /gene="lpxD" FT /locus_tag="ROD_01821" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.0058" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 216691..216777 FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT /inference="protein motif:Prosite:PS00101" FT misc_feature 216736..216789 FT /gene="lpxD" FT /locus_tag="ROD_01821" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.051" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 216790..216843 FT /gene="lpxD" FT /locus_tag="ROD_01821" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.019" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 216901..216954 FT /gene="lpxD" FT /locus_tag="ROD_01821" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.3" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 216967..217020 FT /gene="lpxD" FT /locus_tag="ROD_01821" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.021" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 216976..217062 FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT /inference="protein motif:Prosite:PS00101" FT misc_feature 217021..217074 FT /gene="lpxD" FT /locus_tag="ROD_01821" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 1" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 217075..217128 FT /gene="lpxD" FT /locus_tag="ROD_01821" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 16" FT /inference="protein motif:PFAM:PF00132" FT CDS 217433..217888 FT /transl_table=11 FT /gene="fabZ" FT /locus_tag="ROD_01831" FT /product="(3r)-hydroxymyristol acyl carrier protein FT dehydratase (ec 4.2.1.-)" FT /EC_number="4.2.1.-" FT /db_xref="GOA:D2TI67" FT /db_xref="InterPro:IPR010084" FT /db_xref="InterPro:IPR013114" FT /db_xref="UniProtKB/TrEMBL:D2TI67" FT /protein_id="CBG86963.1" FT /translation="MTTNTHTLHIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNVS FT VNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRP FT VVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA" FT misc_feature 217481..217858 FT /gene="fabZ" FT /locus_tag="ROD_01831" FT /note="HMMPfam hit to PF07977, FT Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FT FabA/FabZ, score 3.7e-68" FT /inference="protein motif:PFAM:PF07977" FT CDS 217892..218680 FT /transl_table=11 FT /gene="lpxA" FT /locus_tag="ROD_01841" FT /product="acyl-[acyl-carrier-protein]--UDP-N-acetylglucos FT amine O-acyltransferase" FT /EC_number="2.3.1.129" FT /db_xref="GOA:D2TI68" FT /db_xref="InterPro:IPR001451" FT /db_xref="InterPro:IPR010137" FT /db_xref="InterPro:IPR011004" FT /db_xref="InterPro:IPR018357" FT /db_xref="UniProtKB/TrEMBL:D2TI68" FT /protein_id="CBG86964.1" FT /translation="MIDKSAFIHPTAIVEEGASVGANVHIGPFCLVGPHVEIGEGTVLK FT SHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQ FT GGGLTKVGSDNLLMINAHVAHDCTIGDRCILANNATLAGHVSLDDYVIIGGMTAVHQFC FT IIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFTREAITAIRNAYKAL FT YRSGKTLEEAKPDIAELAKQHPEVQPFSDFFARSTRGLIR" FT misc_feature 217940..217993 FT /gene="lpxA" FT /locus_tag="ROD_01841" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.089" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 217949..218035 FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT /inference="protein motif:Prosite:PS00101" FT misc_feature 217994..218047 FT /gene="lpxA" FT /locus_tag="ROD_01841" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.46" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 218048..218101 FT /gene="lpxA" FT /locus_tag="ROD_01841" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.84" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 218138..218191 FT /gene="lpxA" FT /locus_tag="ROD_01841" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 7.5" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 218213..218266 FT /gene="lpxA" FT /locus_tag="ROD_01841" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 85" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 218267..218320 FT /gene="lpxA" FT /locus_tag="ROD_01841" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.1" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 218339..218392 FT /gene="lpxA" FT /locus_tag="ROD_01841" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.2" FT /inference="protein motif:PFAM:PF00132" FT misc_feature 218348..218434 FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT /inference="protein motif:Prosite:PS00101" FT misc_feature 218381..218413 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 218552..218575 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 218680..219828 FT /transl_table=11 FT /gene="lpxB" FT /locus_tag="ROD_01851" FT /product="lipid-A-disaccharide synthase" FT /EC_number="2.4.1.182" FT /db_xref="GOA:D2TI69" FT /db_xref="InterPro:IPR003835" FT /db_xref="UniProtKB/TrEMBL:D2TI69" FT /protein_id="CBG86965.1" FT /translation="MANPRPLTIALVAGETSGDILGAGLIRALKARVPHARFVGVAGPR FT MQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTRRFTALQPDVFVGIDAPDFNI FT TLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRSTDMVLAFLPFEKAFYDKYNVPCRF FT IGHTMADAMPLDPDKNAARDAIGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQR FT YPDLEVVVPLVNARRREQFEKIKAETAPELHVHLLDGMGREAMVASDAALLASGTAALE FT CMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEPQKLAQA FT LLPLLAKGETSHAMHDTFRELHQQIRCNADEQAADAVLELAQ" FT misc_feature 218704..219810 FT /gene="lpxB" FT /locus_tag="ROD_01851" FT /note="HMMPfam hit to PF02684, Glycosyl transferase, family FT 19, score 1.5e-214" FT /inference="protein motif:PFAM:PF02684" FT CDS 219825..220421 FT /transl_table=11 FT /gene="rnhB" FT /locus_tag="ROD_01861" FT /product="ribonuclease HII" FT /EC_number="3.1.26.4" FT /db_xref="GOA:D2TI70" FT /db_xref="InterPro:IPR001352" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR022898" FT /db_xref="InterPro:IPR024567" FT /db_xref="UniProtKB/TrEMBL:D2TI70" FT /protein_id="CBG86966.1" FT /translation="MIEFVYPHTRLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLND FT SKKLSEKRRLALYQEIKEKALSWSLGRAEPHEIDKLNILHATMLAMQRAVAGLHIAPEY FT VLIDGNRCPALPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDSVFPQYGFAQHK FT GYPTAFHLEALAAHGATEHHRRSFGPVKRALGLAS" FT misc_feature 219861..220394 FT /gene="rnhB" FT /locus_tag="ROD_01861" FT /note="HMMPfam hit to PF01351, Ribonuclease HII/HIII, score FT 7.3e-94" FT /inference="protein motif:PFAM:PF01351" FT CDS 220446..223928 FT /transl_table=11 FT /gene="dnaE" FT /locus_tag="ROD_01871" FT /product="DNA polymerase III alpha subunit" FT /EC_number="2.7.7.7" FT /db_xref="GOA:D2TI71" FT /db_xref="InterPro:IPR003141" FT /db_xref="InterPro:IPR004013" FT /db_xref="InterPro:IPR004365" FT /db_xref="InterPro:IPR004805" FT /db_xref="InterPro:IPR011708" FT /db_xref="InterPro:IPR016195" FT /db_xref="UniProtKB/TrEMBL:D2TI71" FT /protein_id="CBG86967.1" FT /translation="MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFT FT NLCGLVKFYGAGHSAGIKPIVGADFHVQSELMGDELTHLTVLAANNTGYQNLTLLISKA FT YQRGYGAAGPVIDRDWLIELNEGLILLSGGRMGDVGRGLLRGNSALVEECVAFYEQHFP FT DRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSADFDAHEIRVAIHDG FT FTLDDPKRPRNYSPQQYMRTEEEMCELFSDIPEALENSVEIARRCNVTVRLGEYFLPQF FT PTGDMTTEDFLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGY FT FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM FT PDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDR FT ISKLVPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVI FT APTKITDFAPLYCDEQGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRR FT EKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALV FT ALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIA FT QVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAG FT YGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKIL FT PPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDT FT KKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEE FT PEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTE FT RGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRIL FT IVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEP FT HRSGTIPVHLYYQRADARARLRFGAAWRVSPSDRLLNDLRGLIGSEQVELEFD" FT misc_feature 220464..221063 FT /gene="dnaE" FT /locus_tag="ROD_01871" FT /note="HMMPfam hit to PF02811, PHP, C-terminal, score FT 2.4e-60" FT /inference="protein motif:PFAM:PF02811" FT misc_feature 221157..222650 FT /gene="dnaE" FT /locus_tag="ROD_01871" FT /note="HMMPfam hit to PF07733, Bacterial DNA polymerase FT III, alpha subunit, score 0" FT /inference="protein motif:PFAM:PF07733" FT misc_feature 223440..223664 FT /gene="dnaE" FT /locus_tag="ROD_01871" FT /note="HMMPfam hit to PF01336, Nucleic acid binding, FT OB-fold, tRNA/helicase-type, score 7.9e-13" FT /inference="protein motif:PFAM:PF01336" FT CDS 223941..224900 FT /transl_table=11 FT /gene="accA" FT /locus_tag="ROD_01881" FT /product="acetyl-coenzyme A carboxylase carboxyl FT transferase subunit alpha" FT /EC_number="6.4.1.2" FT /db_xref="GOA:D2TI72" FT /db_xref="InterPro:IPR001095" FT /db_xref="InterPro:IPR011763" FT /db_xref="UniProtKB/TrEMBL:D2TI72" FT /protein_id="CBG86968.1" FT /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLRE FT KSVELTRKIFADLGAWQVAQLARHPQRPYTLDYVRLAFEEFDELAGDRAYADDKAIVGG FT IARLEGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMEMAERFKMPIVTFIDT FT PGAYPGVGAEERGQSEAIARNLREMSRLSVPVICTVIGEGGSGGALAIGVGDKVNMLQY FT STYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIQEPLGGAHRNPEA FT MAASLKAQLLEDLADLDVLSTDDLKNRRYQRLMSYGYA" FT misc_feature 223950..224393 FT /gene="accA" FT /locus_tag="ROD_01881" FT /note="HMMPfam hit to PF03255, Acetyl-CoA carboxylase, FT alpha subunit, score 9e-102" FT /inference="protein motif:PFAM:PF03255" FT CDS join(225082..225405,228114..229544) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_01891" FT /product="putative polysaccharide degrading enzyme FT (pseudogene)" FT /note="pseudogene, disrupted by ISCro1 insertion" FT repeat_region 225396..225404 FT /note="9 bp direct repeat flanking ISCro1" FT repeat_region 225405..228103 FT /note="Insertion sequence ISCro1. 1 of 21 intact ISCro1 FT elements in CR chromosome, all have 30 bp inverted repeats FT which contain 12 mismatches, and are flanked by direct FT repeats of varying length. This element has 9 bp direct FT repeats" FT repeat_region 225405..225434 FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT CDS 225458..226135 FT /transl_table=11 FT /locus_tag="ROD_01901" FT /product="ISCro1 transposase A" FT /db_xref="GOA:D2TGY6" FT /db_xref="InterPro:IPR002514" FT /db_xref="UniProtKB/TrEMBL:D2TGY6" FT /protein_id="CBG86970.1" FT /translation="MSIIFSGHYRMEYRTWITEALRLHFEEHLPRVVAGRRLGVPKSTV FT CSMFVRFRRAGLSWPLPAGMSEQELDACLYGQFSTVPVVRPESTVISETPVVKKRPRRP FT NFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQYRKGGLLPSGKNMPALLP FT VTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRLKGKLTPALLQTLIREIKG FT SSH" FT misc_feature 225542..225607 FT /note="Predicted helix-turn-helix motif with score FT 1051.000, SD 2.77 at aa 29-50, sequence FT LPRVVAGRRLGVPKSTVCSMFV" FT misc_feature 225764..226018 FT /locus_tag="ROD_01901" FT /note="HMMPfam hit to PF01527, Transposase IS3/IS911, score FT 2e-22" FT /inference="protein motif:PFAM:PF01527" FT CDS 226135..226482 FT /transl_table=11 FT /locus_tag="ROD_01911" FT /product="ISCro1 transposase B" FT /db_xref="InterPro:IPR008878" FT /db_xref="UniProtKB/TrEMBL:D2TGY5" FT /protein_id="CBG86971.1" FT /translation="MISLPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFI FT FRGRRGDQIKVLWADSDGLCLFTKRLERGRFIWPVTRDGKVHLTPAQLSMLLEGINWKH FT PKRTERAGIRI" FT misc_feature 226150..226476 FT /locus_tag="ROD_01911" FT /note="HMMPfam hit to PF05717, Transposase (putative), IS66 FT Orf2 like, score 5.7e-70" FT /inference="protein motif:PFAM:PF05717" FT CDS 226502..228073 FT /transl_table=11 FT /locus_tag="ROD_01921" FT /product="ISCro1 transposase C" FT /db_xref="InterPro:IPR004291" FT /db_xref="InterPro:IPR024463" FT /db_xref="InterPro:IPR024474" FT /db_xref="UniProtKB/TrEMBL:D2TGY4" FT /protein_id="CBG86972.1" FT /translation="MDTSLAHENARLRALLQTQQDTIRQMAEYNRLLSQRVAAYASEIN FT RLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETLGEQYDPALPSAL FT RQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIETQR FT PKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQSEIYRRQGVEL FT SRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYV FT RDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYESGRITEAA FT CMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSAEQRLAARKARAASLMQ FT SLYDWIQTQMKTLSRHSDTAKAFAYLLKQWDSLNVYCSNGWVEIDNNIAENALRGVAVG FT RKNWLFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWK FT VDLSSQ" FT misc_feature 226913..227509 FT /locus_tag="ROD_01921" FT /note="HMMPfam hit to PF03050, Transposase, IS66, score FT 4.4e-129" FT /inference="protein motif:PFAM:PF03050" FT repeat_region complement(228074..228103) FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT repeat_region 228104..228112 FT /note="9 bp direct repeat flanking ISCro1" FT misc_feature 228372..228809 FT /locus_tag="ROD_01891" FT /note="HMMPfam hit to PF00182, Glycoside hydrolase, family FT 19, catalytic, score 1.4e-30" FT /inference="protein motif:PFAM:PF00182" FT misc_feature 229089..229337 FT /locus_tag="ROD_01891" FT /note="HMMPfam hit to PF00801, PKD, score 0.00016" FT /inference="protein motif:PFAM:PF00801" FT misc_feature 229377..229475 FT /locus_tag="ROD_01891" FT /note="HMMPfam hit to PF02839, Carbohydrate-binding family FT V/XII, score 0.002" FT /inference="protein motif:PFAM:PF02839" FT CDS 229624..231762 FT /transl_table=11 FT /gene="ldcC" FT /locus_tag="ROD_01941" FT /product="lysine decarboxylase, constitutive" FT /EC_number="4.1.1.18" FT /db_xref="GOA:D2TI76" FT /db_xref="InterPro:IPR000310" FT /db_xref="InterPro:IPR005308" FT /db_xref="InterPro:IPR008286" FT /db_xref="InterPro:IPR011193" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015422" FT /db_xref="InterPro:IPR015424" FT /db_xref="UniProtKB/TrEMBL:D2TI76" FT /protein_id="CBG86973.1" FT /translation="MNIIAIMGPHGVFYKDEPIKELERALQAQGFQIIWPQNSVDLLKF FT IEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLYAFINTHSTMDVSVHDMRMALWFFE FT YALGQAEDIATRIRQYTDEYLDNITPPFTKALFTYVKEGKYTFCTPGHMAGTAYQKSPP FT GCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTST FT SNKIVGMYAAPTGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPRREFT FT RESIENKVAETPQAQWPVHAVITNSTYDGLLYNTNWIKQTLDVPSIHFDSAWVPYTHFH FT PIYQGKSGMSGERVPGKVIFETQSTHKMLAALSQASLIHIKGEYDEDTFNEAFMMHTST FT SPSYPIVASIETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEE FT VDAAECWPVAPGEEWYGFNDADHDHMFLDPVKVTILTPGMDEQGNMSDEGIPAALVAKF FT LDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRVKNMLPDLYAE FT DPDFYRNMRIQDLAQGIHKLIRQHDLPGLMLRAFDTLPEMMMTPHQAWQRQIRGDVETV FT TLDQLVGRVSANMILPYPPGVPLLMPGEMITEQSRAVLDFLLMLCSVGHHYPGFETDIH FT GAKQDEEGVYRVRVLKNI" FT misc_feature 229663..229995 FT /gene="ldcC" FT /locus_tag="ROD_01941" FT /note="HMMPfam hit to PF03709, Orn/Lys/Arg decarboxylase, FT N-terminal, score 6.4e-42" FT /inference="protein motif:PFAM:PF03709" FT misc_feature 230011..231309 FT /gene="ldcC" FT /locus_tag="ROD_01941" FT /note="HMMPfam hit to PF01276, Orn/Lys/Arg decarboxylase, FT major region, score 8.4e-287" FT /inference="protein motif:PFAM:PF01276" FT misc_feature 230707..230751 FT /note="PS00703 Orn/Lys/Arg decarboxylases family 1 FT pyridoxal-P attachment site." FT /inference="protein motif:Prosite:PS00703" FT misc_feature 231331..231735 FT /gene="ldcC" FT /locus_tag="ROD_01941" FT /note="HMMPfam hit to PF03711, Orn/Lys/Arg decarboxylase, FT C-terminal, score 1.1e-84" FT /inference="protein motif:PFAM:PF03711" FT CDS 231795..232217 FT /transl_table=11 FT /locus_tag="ROD_01951" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:D2TI77" FT /protein_id="CBG86974.1" FT /translation="MQITNNGDNDAMLGLKQVHHIAIIATDYAVSKAFYCDILGFTLLS FT EAWRAERDSWKGDLALNGQYVIELFSFPFPPPRPSRPEACGLRHLAFSVDDIEQAIAHL FT EAHEVKCEPVRIDPFTGKRFTFFNDPDGLPLELYEQ" FT misc_feature 231843..232205 FT /locus_tag="ROD_01951" FT /note="HMMPfam hit to PF00903, Glyoxalase/bleomycin FT resistance protein/dioxygenase, score 1.7e-31" FT /inference="protein motif:PFAM:PF00903" FT CDS 232279..233577 FT /transl_table=11 FT /gene="tilS" FT /locus_tag="ROD_01961" FT /product="tRNA(Ile)-lysidine synthase" FT /EC_number="6.3.4.-" FT /db_xref="GOA:D2TI78" FT /db_xref="InterPro:IPR011063" FT /db_xref="InterPro:IPR012094" FT /db_xref="InterPro:IPR012795" FT /db_xref="InterPro:IPR012796" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR015262" FT /db_xref="InterPro:IPR020825" FT /db_xref="UniProtKB/TrEMBL:D2TI78" FT /protein_id="CBG86975.1" FT /translation="MTTLTLNTSLFNRPQILVAFSGGLDSTVLLHQLVQWRALRPELRL FT RAIHIHHGLSPHADEWVAHCEAVCARWQVPLMVRRVQLADEGLGIEALARQARYQAFAQ FT ALAPGEILATAQHLDDQCETFLLALKRGSGPAGLSAMAEVSAFADSRLVRPLLTQSRTA FT LEQWAREHSLCWIEDESNQDDAYDRNFLRLRVLPLLQQRWPHFAQATARSAALCAEQES FT LLDELLAEELSGCMTTNGTLRLSPLMAMHDVRRAALIRRWLAARNAPMPSRDGLARIWQ FT EVALAREDASPCLCFGEYEVRRYQGQLWWVKSRPGQSETVLRWADWQTPLRLPAGLGTA FT ALIPGGELRKPLDDEPVTLRFKAPGMLHIVGRHGGRKLKKIWQELGIPPWRRDTTPLLF FT YGETLIAAAGVFVTHEGVAVEDDGVQLLWQEGE" FT misc_feature 232321..232860 FT /gene="tilS" FT /locus_tag="ROD_01961" FT /note="HMMPfam hit to PF01171, PP-loop, score 5.5e-87" FT /inference="protein motif:PFAM:PF01171" FT misc_feature 232960..233562 FT /gene="tilS" FT /locus_tag="ROD_01961" FT /note="HMMPfam hit to PF09179, Protein of unkown function FT DUF1946, PP-loop ATpase, score 2.9e-89" FT /inference="protein motif:PFAM:PF09179" FT misc_feature 233422..233490 FT /note="PS00334 Myb DNA-binding domain repeat signature 2." FT /inference="protein motif:Prosite:PS00334" FT CDS complement(233662..233922) FT /transl_table=11 FT /gene="rof" FT /locus_tag="ROD_01971" FT /product="Rho-binding antiterminator" FT /db_xref="InterPro:IPR009778" FT /db_xref="InterPro:IPR023534" FT /db_xref="UniProtKB/TrEMBL:D2TI79" FT /protein_id="CBG86976.1" FT /translation="MSMNETYQPINCDDYDNLELACQHHLLLTLELKDGEVLQAKANDL FT VSRKNVEYLITDVAGETRELRLDRIASFSHPEIGTVVVSES" FT misc_feature complement(233674..233898) FT /gene="rof" FT /locus_tag="ROD_01971" FT /note="HMMPfam hit to PF07073, Modulator of Rho-dependent FT transcription termination, score 2.2e-43" FT /inference="protein motif:PFAM:PF07073" FT CDS complement(233909..234127) FT /transl_table=11 FT /locus_tag="ROD_01982" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR009624" FT /db_xref="UniProtKB/TrEMBL:D2TI80" FT /protein_id="CBG86977.1" FT /translation="MLTGGHVEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAA FT DSALSESVREKAAYAAANLLVSDYVNE" FT misc_feature complement(233912..234109) FT /locus_tag="ROD_01982" FT /note="HMMPfam hit to PF06786, Protein of unknown function FT UPF0253, score 1.1e-41" FT /inference="protein motif:PFAM:PF06786" FT CDS 234298..234843 FT /transl_table=11 FT /locus_tag="ROD_01981" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR009822" FT /db_xref="UniProtKB/TrEMBL:D2TI81" FT /protein_id="CBG86978.1" FT /translation="MALKATIYKAVVNVADLDRNQFLDAPLTLARHPSETQERMMLRLL FT AWIKYADERLQFTRGLSAEDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAQEVAL FT FTYNSRAAQIWWQQQQSKCAQFTNLTVWYLDDEQLAQLSEFAGRTMALQATIQDGAIWL FT SDAQNNLEIHLTAWQQPG" FT misc_feature 234298..234840 FT /locus_tag="ROD_01981" FT /note="HMMPfam hit to PF07152, YaeQ, score 6.2e-122" FT /inference="protein motif:PFAM:PF07152" FT CDS 234840..235259 FT /transl_table=11 FT /locus_tag="ROD_01991" FT /product="putative peptidyl-tRNA hydrolase" FT /db_xref="GOA:D2TI82" FT /db_xref="InterPro:IPR000352" FT /db_xref="UniProtKB/TrEMBL:D2TI82" FT /protein_id="CBG86979.1" FT /translation="MIVISRTVSIAEDELEITAIRAQGAGGQHVNKASTAIHLRFDIRA FT SGLPEYYKERLLAASHHLISPDGIIIIKAQEYRSQTLNREAALARLVAVIKELTVEQKS FT RRATRPTRASKERRLVSKAQKSTVKALRGKVRRVD" FT misc_feature 234840..235235 FT /locus_tag="ROD_01991" FT /note="HMMPfam hit to PF00472, Class I peptide chain FT release factor, score 1.4e-37" FT /inference="protein motif:PFAM:PF00472" FT misc_feature 234900..234950 FT /note="PS00745 Prokaryotic-type class I peptide chain FT release factors signature." FT /inference="protein motif:Prosite:PS00745" FT CDS 235293..235994 FT /transl_table=11 FT /gene="cutF" FT /locus_tag="ROD_02001" FT /product="copper homeostasis protein (lipoprotein nlpE)" FT /db_xref="InterPro:IPR007298" FT /db_xref="UniProtKB/TrEMBL:D2TI83" FT /protein_id="CBG86980.1" FT /translation="MKKTLISAIAVLSLFTLFGCNNRSEVDVLQPTRAAELKPMQQSWR FT GILPCADCEGIETSLFLEKDGTWVMNQRYLGAREEPSSFASYGTWARTADKLVLTDSNG FT EKTYYRAKGDSLEMLDRDGNPIQSQFNYTLAPVKAILPVTPMAMRGMYFYMADAATFTD FT CATGRRVSVANNAELERGYLAARGAGEKPVLLTVEGHFTLEANPDTGAPVKTLKADKEI FT KFISGQDCNSK" FT misc_feature 235293..235955 FT /gene="cutF" FT /locus_tag="ROD_02001" FT /note="HMMPfam hit to PF04170, Copper resistance FT lipoprotein NlpE, score 5e-124" FT /inference="protein motif:PFAM:PF04170" FT sig_peptide 235293..235349 FT /gene="cutF" FT /locus_tag="ROD_02001" FT /note="Signal peptide predicted for ROD02001 by SignalP 2.0 FT HMM (Signal peptide probability 0.987) with cleavage site FT probability 0.616 between residues 19 and 20" FT misc_feature 235320..235352 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 235644..235694 FT /note="PS00283 Soybean trypsin inhibitor (Kunitz) protease FT inhibitors family signature." FT /inference="protein motif:Prosite:PS00283" FT CDS 236570..237907 FT /transl_table=11 FT /locus_tag="ROD_02011" FT /product="putative exported protein" FT /db_xref="InterPro:IPR005594" FT /db_xref="UniProtKB/TrEMBL:D2TI84" FT /protein_id="CBG86981.1" FT /translation="MNKKLIALAILFAMGSAHACENTEDCKAAVDDVYEAINTKMQPKQ FT ENESAAVWGEKYANWLGRVNEVAERRLGTTFDNLGDIARWEIANSKTGSSANADSGENG FT NTGATDTNTKNPTGDFIEPELETAYVTAGQAQAGDRAAIAQAQDYADSVATEVENKTKD FT YAAQVATETAATAANNAIGLAAQVATETAATAENNAKGYAANVATAAESKAKQYATSVA FT TDAASTAQTNAEGYAAQVATETAATAENNAKGYASQIATKAADSAKNAAETHADKAATE FT AKSAAVKEAKDDARAQVTAAEKRSNAHADATAKKAEVNANDYTDQQMATAEEYATTLAH FT STIRYANQSLQESKSYTDRVARGLQKQINHNGKAIKRLGASAQATANLHYNANHNGYAI FT AVGEYNSETALAGGLQFNTGKSTAVTVQGSYDAESFGGSVGLHGDW" FT sig_peptide 236570..236626 FT /locus_tag="ROD_02011" FT /note="Signal peptide predicted for ROD02011 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 19 and 20" FT CDS 238563..239669 FT /transl_table=11 FT /gene="ompN" FT /locus_tag="ROD_02021" FT /product="outer membrane protein n, non-specific porin" FT /db_xref="GOA:D2TI85" FT /db_xref="InterPro:IPR001702" FT /db_xref="InterPro:IPR001897" FT /db_xref="InterPro:IPR023614" FT /db_xref="UniProtKB/TrEMBL:D2TI85" FT /protein_id="CBG86982.1" FT /translation="MKKVLMMAIPALLAAGSVHAAEIYNKDGNKLDLYGKVDARHTFSD FT AKSKDGDATYVRLGFKGETQINRDLTGYGQWEYNIQGNKTEDEGADTATRLAFAGLNAG FT DAGTFDYGRNYGVIYDVVAITDMLPVFGGDSYSASDNFMTGRANGLATYRNSNFFGLVE FT GLGFALQYQGKNGAVGENINGRGKVLAQNGEGWGSSVSYDMPYGVSAVVAYSNSHRTGK FT QRTETFNDAKHAEAWATGLKYDANSVYLAANYAETRNMTAMAGSVLSDLELSAVTDKTK FT NLEVVAQYQFDSGLRPSIAYLQSKAQKDGYDYTQVKYIEAGATYYFNKNMSVYGDYKFN FT LLNKNNSDVKNLGLTTDNEIGIGAIYQF" FT sig_peptide 238563..238622 FT /gene="ompN" FT /locus_tag="ROD_02021" FT /note="Signal peptide predicted for ROD02021 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 20 and 21" FT misc_feature 238599..238631 FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT /inference="protein motif:Prosite:PS00626" FT misc_feature 238638..239666 FT /gene="ompN" FT /locus_tag="ROD_02021" FT /note="HMMPfam hit to PF00267, Porin, Gram-negative type, FT score 2.6e-166" FT /inference="protein motif:PFAM:PF00267" FT repeat_region 239703..239712 FT /note="10 bp direct repeat flanking ISCro6" FT repeat_region 239713..241128 FT /note="Insertion sequence ISCro6. Flanked by 18 bp inverted FT repeats which contain 3 mismatches, and 10 bp direct FT repeats. 1 of 6 ISCro6 elements in CR chromosome, of which FT two are intact, two have been disrupted by ISCro1 FT insertion, and two have frameshift mutated transposases" FT /note="The transposase of this copy has been truncated by a FT frameshift mutation" FT repeat_region 239713..239730 FT /note="18 bp terminal inverted repeat of ISCro6, contains 3 FT mismatches" FT CDS join(239802..239942,239944..241116) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_02031" FT /product="ISCro6 transposase (pseudogene)" FT /note="pseudogene, truncated by frameshift mutation" FT misc_feature 240187..240858 FT /locus_tag="ROD_02031" FT /note="HMMPfam hit to PF01609, Transposase, IS4-like, score FT 3.5e-20" FT /inference="protein motif:PFAM:PF01609" FT repeat_region complement(241111..241128) FT /note="18 bp terminal inverted repeat of ISCro6, contains 3 FT mismatches" FT repeat_region 241129..241138 FT /note="10 bp direct repeat flanking ISCro6" FT CDS complement(241198..242916) FT /transl_table=11 FT /gene="proS" FT /locus_tag="ROD_02041" FT /product="prolyl-tRNA synthetase" FT /db_xref="GOA:D2TI86" FT /db_xref="InterPro:IPR002314" FT /db_xref="InterPro:IPR002316" FT /db_xref="InterPro:IPR004154" FT /db_xref="InterPro:IPR004500" FT /db_xref="InterPro:IPR006195" FT /db_xref="InterPro:IPR007214" FT /db_xref="InterPro:IPR023717" FT /db_xref="UniProtKB/TrEMBL:D2TI86" FT /protein_id="CBG86984.1" FT /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPT FT GLRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPF FT VLGPTHEEVITDLVRNELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSF FT HTSQESLQETYDAMYAAYSKIFTRIGLEFRAVQADTGSIGGSASHEFQVLAQSGEDDII FT FSDTSDYAANIELAEAVAPKAPRAAATQEMTLVDTPDAKTIAELVEQYNLPIENTVKTL FT LVKAAEGSSSPLVALLVRGDHELNEVKAEKLPQVASPLTFATEAEIRAVVNAGPGSLGP FT VNMPVPVIIDRTVAAMSDFAAGANVDGKHYFGINWDRDVATPIVADIRNVVAGDPSPDG FT QGTLLIKRGIEVGHIFQLGTKYSEALKAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQ FT NYDERGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRAQGIEVLLDDRKERPG FT VMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVSFLVNANKG" FT misc_feature complement(241210..241494) FT /gene="proS" FT /locus_tag="ROD_02041" FT /note="HMMPfam hit to PF03129, Anticodon-binding, score FT 3.6e-26" FT /inference="protein motif:PFAM:PF03129" FT misc_feature complement(241756..242184) FT /gene="proS" FT /locus_tag="ROD_02041" FT /note="HMMPfam hit to PF04073, YbaK/prolyl-tRNA synthetase FT associated region, score 5.6e-07" FT /inference="protein motif:PFAM:PF04073" FT misc_feature complement(242260..242772) FT /gene="proS" FT /locus_tag="ROD_02041" FT /note="HMMPfam hit to PF00587, Aminoacyl-tRNA synthetase, FT class II (G, H, P and S), score 1.2e-66" FT /inference="protein motif:PFAM:PF00587" FT misc_feature complement(242440..242502) FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT /inference="protein motif:Prosite:PS00179" FT CDS complement(243027..243734) FT /transl_table=11 FT /locus_tag="ROD_02051" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR001378" FT /db_xref="InterPro:IPR023370" FT /db_xref="UniProtKB/TrEMBL:D2TI87" FT /protein_id="CBG86985.1" FT /translation="MSHFQFEQIGVIRSPYKEKFAVPRQPGLVKSARGELHLLPPYNQA FT DAVRGLDAFSHLWVLFIFHQTMEGGWRPTVRPPRLGGNARMGIFATRSTFRPNPVGMSL FT VELNAIVCQKDKVILKLGSLDLVDGTPVIDIKPYLPFAESLPEASASYAQHAPLAEMSV FT SFTDEIERQLPVLEKRYPQLKTFICEVLAQDPRPAYRKGEETGKTYAVWLHDFNVRWRV FT TDAGFEVFALEPR" FT misc_feature complement(243303..243683) FT /locus_tag="ROD_02051" FT /note="HMMPfam hit to PF01980, Protein of unknown function FT UPF0066, score 7.6e-54" FT /inference="protein motif:PFAM:PF01980" FT CDS complement(243731..244135) FT /transl_table=11 FT /gene="rcsF" FT /locus_tag="ROD_02061" FT /product="RcsF, phosphorelay glucose and zinc sensor" FT /db_xref="UniProtKB/TrEMBL:D2TI88" FT /protein_id="CBG86986.1" FT /translation="MRALPICLLALVLSGCSMLSRSPVETVKSTPTPPKAVPEKPKAPR FT VAPVRIYTNAEALVGKPFRDLGEVSGESCQATNQDSPPNIPTARKRMQINASKMKANAV FT LLHSCEVTSGTPGCYRQAVCIGSALNISAK" FT sig_peptide complement(244079..244135) FT /gene="rcsF" FT /locus_tag="ROD_02061" FT /note="Signal peptide predicted for ROD02061 by SignalP 2.0 FT HMM (Signal peptide probability 0.897) with cleavage site FT probability 0.413 between residues 19 and 20" FT misc_feature complement(244088..244120) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(244253..245068) FT /transl_table=11 FT /gene="metQ" FT /locus_tag="ROD_02071" FT /product="D-methionine ABC transporter, substrate-binding FT lipoprotein" FT /db_xref="InterPro:IPR004478" FT /db_xref="InterPro:IPR004872" FT /db_xref="UniProtKB/TrEMBL:D2TI89" FT /protein_id="CBG86987.1" FT /translation="MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGSEQQV FT AEVAQKVAKEKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLV FT AAGNTFVYPIAGYSKKIKSLDELQPGAQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGL FT LPTSLDIAENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQINLTPAKDGIFVED FT KDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW" FT misc_feature complement(244256..244972) FT /gene="metQ" FT /locus_tag="ROD_02071" FT /note="HMMPfam hit to PF03180, NLPA lipoprotein, score FT 2.4e-148" FT /inference="protein motif:PFAM:PF03180" FT misc_feature complement(245000..245032) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT sig_peptide complement(245003..245068) FT /gene="metQ" FT /locus_tag="ROD_02071" FT /note="Signal peptide predicted for ROD02071 by SignalP 2.0 FT HMM (Signal peptide probability 0.995) with cleavage site FT probability 0.719 between residues 22 and 23" FT CDS complement(245110..245763) FT /transl_table=11 FT /gene="metI" FT /locus_tag="ROD_02081" FT /product="D-methionine ABC transporter, permease protein" FT /db_xref="GOA:D2TI90" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TI90" FT /protein_id="CBG86988.1" FT /translation="MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQ FT IIENAKLYRILSAVVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFI FT ARMVENALLEIPVGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLITLVGYSAM FT GGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVVLVYLIQFTGDRIVRSVTHK" FT misc_feature complement(245116..245727) FT /gene="metI" FT /locus_tag="ROD_02081" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 3.5e-22" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(join(245155..245223,245266..245334, FT 245452..245520,245533..245601,245638..245706)) FT /gene="metI" FT /locus_tag="ROD_02081" FT /note="5 probable transmembrane helices predicted for FT ROD02081 by TMHMM2.0 at aa 20-42, 55-77, 82-104, 144-166 FT and 181-203" FT misc_feature complement(245344..245430) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT CDS complement(245756..246787) FT /transl_table=11 FT /gene="metN" FT /locus_tag="ROD_02091" FT /product="D-methionine ABC transporter, ATP-binding FT protein" FT /db_xref="GOA:D2TI91" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR012692" FT /db_xref="InterPro:IPR017871" FT /db_xref="InterPro:IPR017908" FT /db_xref="InterPro:IPR018449" FT /db_xref="UniProtKB/TrEMBL:D2TI91" FT /protein_id="CBG86989.1" FT /translation="MIKLSNITKVFQQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKS FT TLIRCVNLLERPTEGSVLVDGQELTTLSEAELTKARRQIGMIFQHFNLLSSRTVFGNVA FT LPLELDNTPKEESKRRVTELLDLVGLGDKHDSYPANLSGGQKQRVAIARALASQPKVLL FT CDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ FT DTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYLQRLKVEPAAGSVPMLRMEFTGQSVDAP FT LLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQETQAAIAWLQEHHVKVEVL FT GYV" FT misc_feature complement(246137..246697) FT /gene="metN" FT /locus_tag="ROD_02091" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 8.5e-76" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(246323..246367) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(246653..246676) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 246979..247545 FT /transl_table=11 FT /gene="gmhB" FT /locus_tag="ROD_02101" FT /product="D,D-heptose 1,7-bisphosphate phosphatase" FT /EC_number="3.1.3.-" FT /db_xref="GOA:D2TI92" FT /db_xref="InterPro:IPR004446" FT /db_xref="InterPro:IPR006543" FT /db_xref="InterPro:IPR006549" FT /db_xref="InterPro:IPR013954" FT /db_xref="InterPro:IPR023214" FT /db_xref="UniProtKB/TrEMBL:D2TI92" FT /protein_id="CBG86990.1" FT /translation="MAKSVPAIFLDRDGTINVDHGYVHEIDDFEFIEGVIDAMRELKTM FT GFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEYR FT QVCDCRKPHPGMLISARDFLHIDMAASYMVGDKLEDMQAAEAAGVGTKVLVRTGKPVTA FT EAENAADWVISSLAELPAAIKKQQK" FT misc_feature 247075..247449 FT /gene="gmhB" FT /locus_tag="ROD_02101" FT /note="HMMPfam hit to PF00702, Haloacid dehalogenase-like FT hydrolase, score 5.8e-08" FT /inference="protein motif:PFAM:PF00702" FT rRNA 247916..249457 FT /note="16S rRNA" FT tRNA 249629..249701 FT /locus_tag="ROD_t01" FT /product="transfer RNA-Glu" FT /anticodon=(pos:249663..249665,aa:Glu) FT /note="tRNA Glu anticodon TTC, Cove score 56.72" FT rRNA 250022..253008 FT /note="23S rRNA" FT rRNA 253208..253323 FT /note="5S rRNA" FT tRNA 253378..253451 FT /locus_tag="ROD_t02" FT /product="transfer RNA-Asp" FT /anticodon=(pos:253412..253414,aa:Asp) FT /note="tRNA Asp anticodon GTC, Cove score 80.06" FT CDS complement(254140..257151) FT /transl_table=11 FT /locus_tag="ROD_02111" FT /product="putative adhesin autotransporter" FT /db_xref="GOA:D2TI93" FT /db_xref="InterPro:IPR004899" FT /db_xref="InterPro:IPR005546" FT /db_xref="InterPro:IPR006315" FT /db_xref="InterPro:IPR011050" FT /db_xref="InterPro:IPR012332" FT /db_xref="UniProtKB/TrEMBL:D2TI93" FT /protein_id="CBG86991.1" FT /translation="MNASFKPTKIALFISALISSAAFAATPASVIIDSSTAAAGRIVNL FT PSGSNVSFINVSVDDALVTMGDNTTITSGGDYPDDSRTFNPGYYIKATAGTVDFGKNFS FT LNYTFDYNVNSNYRGAAAYIYGTGVLKAENLTINAANSVVEDYDLVNSILMMDDARVDL FT KGTTNLFTGNIETNEDSILNVENINLTYIDSDPLSNRGHHAALSLEGKESNFTGTVNIK FT SVLASDGSLQGIDITGNTATFSGATNLDLDTAQGSISGVEMIDTIYHLSGNFSNSTPEY FT LTNIVKFNELNIKGINHGPDGQAAYVRGFTSHSQKGTTDVAINKLTIDIASNYSATGIN FT LGDSDAMGSAKYRINDANIKVSGGEQATLTGYLSSRGEWADTDTIIGNINIQSLGGKDT FT ILLRQNGTNDIFTGDVTLGSQTSYDSVNGTLYSIFGRSYDSTGSIGTTNIINNNKLVAW FT GKMYSGEGHTINIISGDNSYIHGDTEITDSGAINMRLKGGNSRWDMTGNSTITNLMLEN FT STLNFMPPAAQTRSLTRAASTFKTLTINGDYIGNNGNVVMNTQLGDDASPTDRLVVSGN FT TSGTTNVKVVNAGGAGALTTNGIELITVAGTSGGEFKQDGRIVAGAYDYTLARGEGANE FT KNWYLTSGLSTEPQPDPASPVDPTEPVIPQAPAKPEPQTPREHAVRPEAGLYGMNLQAA FT NTMFNTRLHDRLGETHYVDALTGEQAVTSLWLRNVGGHTRQHDGSGQLDMQANRYVMQL FT GGDIAQWSSDNTDRFHLGLMAGYANQKARAENQRNGNRADSRISGYSVGLYGTWLQDNA FT THEGAYVDTWAQYSWFDNSVNGRGIDEATKEYDSSGFTVSVESGYTWKLADISERNALY FT IQPKAQVTWMGVKADEHKEANGTRVEGKGDGNIQTRLGVRLYGQGHNPMDDKTGRTFQP FT FVEANWIHNTRDFGVSLNDQNVELTGTRNIGELKAGVEGQLTKNVALWGNIAQQVGDKG FT YSDTSAMVGIKASF" FT misc_feature complement(254170..255000) FT /locus_tag="ROD_02111" FT /note="HMMPfam hit to PF03797, Autotransporter beta-domain, FT score 2.3e-42" FT /inference="protein motif:PFAM:PF03797" FT misc_feature complement(255226..255624) FT /locus_tag="ROD_02111" FT /note="HMMPfam hit to PF03212, Pertactin, score 2.3e-07" FT /inference="protein motif:PFAM:PF03212" FT sig_peptide complement(257080..257151) FT /locus_tag="ROD_02111" FT /note="Signal peptide predicted for ROD02111 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT CDS 258055..258858 FT /transl_table=11 FT /gene="dkgA" FT /locus_tag="ROD_02121" FT /product="2,5-diketo-D-gluconic acid reductase A" FT /db_xref="GOA:D2TI94" FT /db_xref="InterPro:IPR001395" FT /db_xref="InterPro:IPR018170" FT /db_xref="InterPro:IPR020471" FT /db_xref="InterPro:IPR023210" FT /db_xref="UniProtKB/TrEMBL:D2TI94" FT /protein_id="CBG86992.1" FT /translation="MTVPAFGLGTFRLKDDVVIASVKTALELGYRAVDTAQIYDNEAAV FT GQAIAESSVPRGDLYITTKIWTENLSKEKLIPSLKESLNKLRTDYVDLTLIHWPSPGDA FT VSLEETMQALLEAKAQGLTREIGISNFTIPLMEKAIAAAGVENIATNQIELSPYLQNGK FT VVEWAKQHGIHITSYMTLAYGKALKDDVIARIAAKHNATPAQVILAWAMGEGYSVIPSS FT TKRENLASNLLAQELQLDAEDKEAIAALDCNDRLVSPEGLAPQWD" FT misc_feature 258055..258810 FT /gene="dkgA" FT /locus_tag="ROD_02121" FT /note="HMMPfam hit to PF00248, Aldo/keto reductase, score FT 4.8e-88" FT /inference="protein motif:PFAM:PF00248" FT misc_feature 258139..258192 FT /note="PS00798 Aldo/keto reductase family signature 1." FT /inference="protein motif:Prosite:PS00798" FT misc_feature 258394..258447 FT /note="PS00062 Aldo/keto reductase family signature 2." FT /inference="protein motif:Prosite:PS00062" FT CDS complement(258863..259780) FT /transl_table=11 FT /locus_tag="ROD_02131" FT /product="LysR-family transcriptional regulator" FT /db_xref="GOA:D2TI95" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TI95" FT /protein_id="CBG86993.1" FT /translation="MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKL FT GVSLLNRTTRQLSLTEEGERYFRRVQSVLQEMAAAETEIMETRTTPRGLLRIDAATPVV FT LHFLMPLIKPFRERYPDITLSLVSSETFINLIERKVDVAIRAGKLTDSSLRARPLFTSY FT RKIIASPEYIARFGRPETVEDLKQHLCLGFSEPVSLNTWPVACCDGQLHEIECGISSNS FT GETLKQLCLTGNGIACLSDYMIDREIARGELVELMADKRLPVEMPFSAVYYSDRAVSTR FT IRAFIDFLSEHVKTAPEGAAVKKG" FT misc_feature complement(258899..259519) FT /locus_tag="ROD_02131" FT /note="HMMPfam hit to PF03466, LysR, substrate-binding, FT score 9.9e-51" FT /inference="protein motif:PFAM:PF03466" FT misc_feature complement(259589..259768) FT /locus_tag="ROD_02131" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 1.3e-19" FT /inference="protein motif:PFAM:PF00126" FT misc_feature complement(259634..259726) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature complement(259664..259729) FT /note="Predicted helix-turn-helix motif with score FT 1503.000, SD 4.31 at aa 18-39, sequence FT GSFSRAAEQLGQANSAVSRAVK" FT CDS 260045..260845 FT /transl_table=11 FT /locus_tag="ROD_02141" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TI96" FT /db_xref="InterPro:IPR005135" FT /db_xref="InterPro:IPR022958" FT /db_xref="UniProtKB/TrEMBL:D2TI96" FT /protein_id="CBG86994.1" FT /translation="MRKNTYAMRYVAGQPAERILPPGSFSGIGQALPAGAPLSSEDRIR FT ILVWNIFKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATTNYLAADQVPAFVLP FT QHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNFSLG FT VDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRR FT RAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDP" FT misc_feature 260174..260821 FT /locus_tag="ROD_02141" FT /note="HMMPfam hit to PF03372, FT Endonuclease/exonuclease/phosphatase, score 3.7e-22" FT /inference="protein motif:PFAM:PF03372" FT CDS 260921..261691 FT /transl_table=11 FT /locus_tag="ROD_02151" FT /product="putative methyltransferase" FT /db_xref="GOA:D2TI97" FT /db_xref="InterPro:IPR013216" FT /db_xref="UniProtKB/TrEMBL:D2TI97" FT /protein_id="CBG86995.1" FT /translation="MTTHSHHDNVEKQFGSQASAYLTSAVHASGRDLTRLAERLSSSPS FT ARVLDMGCGAGHASFVAAQKVNQVVAYDLSAQMLEVVAQAAQERGLTNIVTRQGYAESL FT PFEAGAFDIVISRYSAHHWHDVGQALREVNRVLKPGGVLIVMDIMSPGHPVRDIWLQTV FT EALRDTSHVRNYSSGEWLSLINEANLITDSVVTDRMALEFSSWVARMRTPAALVDAIRI FT YQESASTEVKAYFGLQDDGSFSSDTIMVEAHKAA" FT misc_feature 261065..261355 FT /locus_tag="ROD_02151" FT /note="HMMPfam hit to PF08241, Methyltransferase type 11, FT score 2.1e-35" FT /inference="protein motif:PFAM:PF08241" FT CDS complement(261741..263108) FT /transl_table=11 FT /gene="mltD" FT /locus_tag="ROD_02161" FT /product="membrane-bound lytic murein transglycosylase D FT precursor" FT /EC_number="3.2.1.-" FT /db_xref="GOA:D2TIZ4" FT /db_xref="InterPro:IPR000189" FT /db_xref="InterPro:IPR002482" FT /db_xref="InterPro:IPR008258" FT /db_xref="InterPro:IPR018392" FT /db_xref="InterPro:IPR023346" FT /db_xref="UniProtKB/TrEMBL:D2TIZ4" FT /protein_id="CBG86996.1" FT /translation="MKAKAILLASVLLVGCQSSQHAGNVQQHAQSLSAAGQGEAGKFTS FT QARWMDDGTSLAPDQDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPY FT MYWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRSY FT DARRDVVASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDFW FT SLPLPRETKLYVPKMLALSDILKNSKRYGVNLPTPDESRALARVRLNSPVEMAQVADMA FT GMPVSKLKTFNAGVKGSTLGLSGPQYVMVPKKHAAQLRESLASGEIAAVQSTLIADNSP FT LNSRSYTVRSGDTLSGIASRLGVSTKDLQQWNKLRGSSLKVGQSLTVGAGSSAQRLANN FT SDSITYRVRKGDSLSSIARRHGVNIKDVMRWNSDTANLQPGDQLTLFVKNSSAPDS" FT misc_feature complement(261771..261896) FT /gene="mltD" FT /locus_tag="ROD_02161" FT /note="HMMPfam hit to PF01476, Peptidoglycan-binding LysM, FT score 2e-13" FT /inference="protein motif:PFAM:PF01476" FT misc_feature complement(261945..262073) FT /gene="mltD" FT /locus_tag="ROD_02161" FT /note="HMMPfam hit to PF01476, Peptidoglycan-binding LysM, FT score 2.6e-17" FT /inference="protein motif:PFAM:PF01476" FT misc_feature complement(261990..262055) FT /note="Predicted helix-turn-helix motif with score FT 1013.000, SD 2.64 at aa 352-373, sequence FT DTLSGIASRLGVSTKDLQQWNK" FT misc_feature complement(262446..262796) FT /gene="mltD" FT /locus_tag="ROD_02161" FT /note="HMMPfam hit to PF01464, Lytic transglycosylase-like, FT catalytic, score 1.1e-39" FT /inference="protein motif:PFAM:PF01464" FT misc_feature complement(262653..262739) FT /note="PS00922 Prokaryotic transglycosylases signature." FT /inference="protein motif:Prosite:PS00922" FT misc_feature complement(262824..263108) FT /gene="mltD" FT /locus_tag="ROD_02161" FT /note="HMMPfam hit to PF06474, MLTD-N, score 4.3e-39" FT /inference="protein motif:PFAM:PF06474" FT sig_peptide complement(263043..263108) FT /gene="mltD" FT /locus_tag="ROD_02161" FT /note="Signal peptide predicted for ROD02161 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.988 between residues 22 and 23" FT misc_feature complement(263061..263093) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(263180..263935) FT /transl_table=11 FT /gene="gloB" FT /locus_tag="ROD_02171" FT /product="probable hydroxyacylglutathione hydrolase" FT /EC_number="3.1.2.6" FT /db_xref="GOA:D2TIZ5" FT /db_xref="InterPro:IPR001279" FT /db_xref="InterPro:IPR017782" FT /db_xref="UniProtKB/TrEMBL:D2TIZ5" FT /protein_id="CBG86997.1" FT /translation="MNLNSIPAFQDNYIWVLSDNQSRCLIVDPGDAAPVLQAIAENQWQ FT PEAILLTHHHHDHVGGVKALVQKFPHLVVYGPAETQDKGATRIVNDGDSILILGHEFRI FT FATPGHTSGHICYFSHPYLFCGDTLFSGGCGRLFEGTASQMYQSLKKIAALPDDTLICC FT AHEYTLANMKFALSILPHDSFINDYYLKVNELRAKKQMTLPVILKNERQNNIFLRTEDA FT DLIKEINKETILQQPEQRFAWLRSKKDSF" FT misc_feature complement(263441..263905) FT /gene="gloB" FT /locus_tag="ROD_02171" FT /note="HMMPfam hit to PF00753, Beta-lactamase-like, score FT 1.2e-37" FT /inference="protein motif:PFAM:PF00753" FT CDS 263969..264703 FT /transl_table=11 FT /locus_tag="ROD_02181" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TIZ6" FT /db_xref="InterPro:IPR013216" FT /db_xref="UniProtKB/TrEMBL:D2TIZ6" FT /protein_id="CBG86998.1" FT /translation="MKPARNPKTVVAPERWGDMPWGEYYRQALEQQLNPWFAKMYGFHL FT LKVGNLSAEINSEACAVSHQVSVSIGGSPVQVQADPLFLPFAPKSVDVCLLAHALPWCT FT DPHRLLREADRVLIDDGWLVLSGFNPVSLMGLRKLVPVLRKTPPYNSRMFTLMRQLDWL FT SLLNFEVLHYSRFHVLPWKKNGGKMLSAHLPALGCMQLIVARKRTIPLTLNPMKQSKAK FT ARIPQAVGATRQYRKPDDQAST" FT misc_feature 264065..264343 FT /locus_tag="ROD_02181" FT /note="HMMPfam hit to PF08241, Methyltransferase type 11, FT score 4e-06" FT /inference="protein motif:PFAM:PF08241" FT CDS complement(264688..265155) FT /transl_table=11 FT /gene="rnhA" FT /locus_tag="ROD_02191" FT /product="ribonuclease HI" FT /EC_number="3.1.26.4" FT /db_xref="GOA:D2TIZ7" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR022892" FT /db_xref="UniProtKB/TrEMBL:D2TIZ7" FT /protein_id="CBG86999.1" FT /translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSEGYTLTTNN FT RMELMATIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLW FT KRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTQEDIGYQVEA" FT misc_feature complement(264730..265152) FT /gene="rnhA" FT /locus_tag="ROD_02191" FT /note="HMMPfam hit to PF00075, Ribonuclease H, score FT 1.2e-70" FT /inference="protein motif:PFAM:PF00075" FT CDS 265219..265950 FT /transl_table=11 FT /gene="dnaQ" FT /locus_tag="ROD_02201" FT /product="DNA polymerase III epsilon subunit" FT /db_xref="GOA:D2TIZ8" FT /db_xref="InterPro:IPR006054" FT /db_xref="InterPro:IPR006055" FT /db_xref="InterPro:IPR006309" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013520" FT /db_xref="UniProtKB/TrEMBL:D2TIZ8" FT /protein_id="CBG87000.1" FT /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTG FT NNFHIYLKPDRLVDPEAFGVHGIADEFLLDKPTFADVADEFLDYIRGAELVIHNASFDI FT GFMDYEFSKLNRDIPKTSSFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHG FT ALLDAQILADVYLAMTGGQTSMTFAMEGETQQQQGEETIQRLVRQARKLRVVFASDEEV FT AAHEARLDLVEKKGGSCLWRA" FT misc_feature 265240..265743 FT /gene="dnaQ" FT /locus_tag="ROD_02201" FT /note="HMMPfam hit to PF00929, Exonuclease, RNase T and DNA FT polymerase III, score 1.5e-54" FT /inference="protein motif:PFAM:PF00929" FT tRNA 266085..266158 FT /locus_tag="ROD_t03" FT /product="transfer RNA-Asp" FT /anticodon=(pos:266119..266121,aa:Asp) FT /note="tRNA Asp anticodon GTC, Cove score 80.06" FT CDS complement(267608..268378) FT /transl_table=11 FT /locus_tag="ROD_02211" FT /product="putative carbon-nitrogen hydrolase" FT /db_xref="GOA:D2TIZ9" FT /db_xref="InterPro:IPR001110" FT /db_xref="InterPro:IPR003010" FT /db_xref="UniProtKB/TrEMBL:D2TIZ9" FT /protein_id="CBG87001.1" FT /translation="MPGLKITLLQQPLAWLDGPANLRHFDRQLELITGRDLIVLPEMFT FT TGFAMEAAQNSLSQQALSGWMREKAQQCNAMIAGSAALQTSSGAVNRFLLVEPQGEIHF FT YDKRHLFRMADEHRHYLPGNRRVVVEWRGWRILPQVCYDLRFPVWSRNLNDYDLALYVA FT NWPAPRSLHWQTLLSARAIENQAYVAGCNRVGTDGNGHHYRGDSRVINPQGEVIATADA FT HQATRIDAELSLSALKEYRENFPAWQDADGFTLR" FT misc_feature complement(267881..268366) FT /locus_tag="ROD_02211" FT /note="HMMPfam hit to PF00795, Nitrilase/cyanide hydratase FT and apolipoprotein N-acyltransferase, score 2.3e-07" FT /inference="protein motif:PFAM:PF00795" FT CDS complement(268487..270931) FT /transl_table=11 FT /gene="fadE" FT /locus_tag="ROD_02221" FT /product="acyl-CoA dehydrogenase" FT /EC_number="1.3.99.-" FT /db_xref="GOA:D2TJ00" FT /db_xref="InterPro:IPR006090" FT /db_xref="InterPro:IPR006091" FT /db_xref="InterPro:IPR006092" FT /db_xref="InterPro:IPR009075" FT /db_xref="InterPro:IPR009100" FT /db_xref="InterPro:IPR013786" FT /db_xref="InterPro:IPR015396" FT /db_xref="UniProtKB/TrEMBL:D2TJ00" FT /protein_id="CBG87002.1" FT /translation="MMILSILATIVLLGALFYHRVSLLLSSLILLAWTAALGAAGVWNI FT WLLVPLAIILLPFNLTPMRKSMISVPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQ FT GKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHR FT FFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTQEQK FT DHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYIT FT LAPIATVLGLAFKLSDPEKLLGGEEELGITCALIPTSTPGVEIGRRHFPLNVPFQNGPT FT RGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGLKSVAMATGAYAHI FT RRQFKISIGKMEGIEEPLARIAGNAYVMDAAATLITYGIMLGEKPAVLSAIVKYHCTHR FT GQRSIIDAMDITGGKGIMLGESNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCH FT PYVLEEMAAAQNNDVNAFDKLLFKHIGHVGSNTVRSFWLGLTRGLTSASPTGDATKRYY FT QHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDVLSQLYLASAVLKRYDDEGRHE FT ADLPLVHWGVQDALYQAEQAMDDLLQNFPNRLVAGLLNAALFPTGRHYLAPSDKLDHKV FT AKILQVPSATRDRIGRGQYLKPSEHNPPGLLEEALRDVMAAEPVHQRICKEIGKNLPFT FT RLDELAQNALAKGLIDKEEAAILVKAEESRLRSINVDDFDADALATQPVKLPEKVRKVE FT AA" FT misc_feature complement(268556..269392) FT /gene="fadE" FT /locus_tag="ROD_02221" FT /note="HMMPfam hit to PF09317, Protein of unknown function FT DUF1974, score 4.1e-185" FT /inference="protein motif:PFAM:PF09317" FT misc_feature complement(269432..269854) FT /gene="fadE" FT /locus_tag="ROD_02221" FT /note="HMMPfam hit to PF00441, Acyl-CoA FT oxidase/dehydrogenase, type 1, score 1.3e-09" FT /inference="protein motif:PFAM:PF00441" FT misc_feature complement(270233..270478) FT /gene="fadE" FT /locus_tag="ROD_02221" FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal, score 7.5e-06" FT /inference="protein motif:PFAM:PF02771" FT misc_feature complement(join(270749..270817,270836..270904)) FT /gene="fadE" FT /locus_tag="ROD_02221" FT /note="2 probable transmembrane helices predicted for FT ROD02221 by TMHMM2.0 at aa 10-32 and 39-61" FT sig_peptide complement(270815..270931) FT /gene="fadE" FT /locus_tag="ROD_02221" FT /note="Signal peptide predicted for ROD02221 by SignalP 2.0 FT HMM (Signal peptide probability 0.988) with cleavage site FT probability 0.510 between residues 39 and 40" FT CDS 271170..271748 FT /transl_table=11 FT /gene="gmhA" FT /locus_tag="ROD_02231" FT /product="phosphoheptose isomerase" FT /EC_number="5.3.1.-" FT /db_xref="GOA:D2TJ01" FT /db_xref="InterPro:IPR001347" FT /db_xref="InterPro:IPR004515" FT /db_xref="InterPro:IPR020620" FT /db_xref="UniProtKB/TrEMBL:D2TJ01" FT /protein_id="CBG87003.1" FT /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGG FT KVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYDYVFSRY FT VEAVGREGDVLLGISTSGNSGNVIKAIAAAREKGMKVIALTGKDGGKMAGTADIEIRVP FT HFGYADRIQEIHIKVIHILIQLIEKEMVK" FT misc_feature 271497..271661 FT /gene="gmhA" FT /locus_tag="ROD_02231" FT /note="HMMPfam hit to PF01380, Sugar isomerase (SIS), score FT 1.8e-05" FT /inference="protein motif:PFAM:PF01380" FT CDS 271848..272615 FT /transl_table=11 FT /locus_tag="ROD_02241" FT /product="putative amidotransferase" FT /db_xref="GOA:D2TJ02" FT /db_xref="InterPro:IPR000583" FT /db_xref="InterPro:IPR017932" FT /db_xref="UniProtKB/TrEMBL:D2TJ02" FT /protein_id="CBG87004.1" FT /translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKG FT CRTFKDPLPGFNSPIARLVQEYPIKSCSVVAHIRQANRGKVALENTHPFTRELWGRNWT FT YAHNGQLSGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMTAVFRYIAALA FT DELREKGVFNMLLSDGRYVMAYCSTHLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDV FT VTVLATQPLTGNETWQKIMPGEWALFCLGERIV" FT misc_feature 271851..272498 FT /locus_tag="ROD_02241" FT /note="HMMPfam hit to PF00310, Glutamine amidotransferase, FT class-II, score 3.4e-37" FT /inference="protein motif:PFAM:PF00310" FT CDS complement(272586..273326) FT /transl_table=11 FT /locus_tag="ROD_02251" FT /product="putative lipoprotein" FT /db_xref="GOA:D2TJ03" FT /db_xref="InterPro:IPR005490" FT /db_xref="UniProtKB/TrEMBL:D2TJ03" FT /protein_id="CBG87005.1" FT /translation="MRKIALFIAMLLIPCVSFAGLLGSSSPTTPISKEYKQQLMGSPVY FT IQIFKEERTLDLYVKMGEQYQLLDSYKICNYSGGLGPKQRQGDFKSPEGFYSVQRNQLK FT PDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGACVSVGCYAMTDSGIDEIFQFVTGALV FT FGQPSVQVSIYPFRMTDANMQRHKYSYYKDFWTQLKPGYDYFEQTRKPPTVSVVDGRYV FT VSKPLSHEVVQPQLASNYTLPETK" FT misc_feature complement(272640..273215) FT /locus_tag="ROD_02251" FT /note="HMMPfam hit to PF06104, Protein of unknown function FT DUF949, bacterial, score 2.1e-149" FT /inference="protein motif:PFAM:PF06104" FT misc_feature complement(272898..272930) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(273249..273317) FT /locus_tag="ROD_02251" FT /note="1 probable transmembrane helix predicted for FT ROD02251 by TMHMM2.0 at aa 4-26" FT sig_peptide complement(273270..273326) FT /locus_tag="ROD_02251" FT /note="Signal peptide predicted for ROD02251 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.898 between residues 19 and 20" FT CDS 273662..274426 FT /transl_table=11 FT /gene="yafL" FT /locus_tag="ROD_02261" FT /product="putative exported protein" FT /db_xref="InterPro:IPR000064" FT /db_xref="UniProtKB/TrEMBL:D2TJ04" FT /protein_id="CBG87006.1" FT /translation="MKFSSFAPRLMLPGLFSLCVVFSPDCAAVIKHPASHLNQSYAAKL FT RQRNRERLLGKYHALMQKKAHYIVEGDAASKRALRQHNRQLIKQHPEWFPGPLKASDSR FT WRALAENSHFLSSDHLHNMTEVAIHRLEQQLGKPYLWGGASPEQGFDCSGLVFYAYNKI FT LAAKLPRTANEMYHYRRATIVADRDLRRGDLLFFHVHSREIADHMGVYLGNGEFIESPR FT TGETIRVSHLADPFWQAHYLGARRILTEETII" FT sig_peptide 273662..273742 FT /gene="yafL" FT /locus_tag="ROD_02261" FT /note="Signal peptide predicted for ROD02261 by SignalP 2.0 FT HMM (Signal peptide probability 0.984) with cleavage site FT probability 0.620 between residues 27 and 28" FT misc_feature 274067..274399 FT /gene="yafL" FT /locus_tag="ROD_02261" FT /note="HMMPfam hit to PF00877, NLP/P60, score 3.9e-50" FT /inference="protein motif:PFAM:PF00877" FT CDS complement(274826..276919) FT /transl_table=11 FT /gene="lfhA" FT /locus_tag="ROD_02271" FT /product="lateral flagellar export/assembly protein" FT /db_xref="GOA:D2TJ05" FT /db_xref="InterPro:IPR001712" FT /db_xref="InterPro:IPR006301" FT /db_xref="UniProtKB/TrEMBL:D2TJ05" FT /protein_id="CBG87007.1" FT /translation="MPKTIKQLMALLRNGNIGVPLVILSILAMVILPLPPALLDILFTF FT NIVLAVMVLLVSVSARRPLEFSLFPTILLITTLMRLTLNVASTRVVLLHGHMGAGAAGK FT VIESFGQVVIGGNFVVGFVVFIILMIINFIVVTKGAERISEVSARFTLDAMPGKQMAID FT ADLNAGLINQQQAQARRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIG FT IFKYDLSAEAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDISSDVRSQLL FT ASPSVLYTATTIMLVLAVVPGMPHFPFLVFSGLLGFTAWRMSKRPAAAEAEEKSLETLS FT KTIAETTEQQVSWETIPLIEPISLSLGYKLVALVDKAKGNPLTQRIRGVRQVISDTNGV FT LLPEIRIRENFRLKPSQYAIFINGIKADEADIPSDKLMALPSSETYGEIDGILGHDPAY FT GMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKVVRSYIPELFNYDDITQLHNRLSS FT MAPRLAEDLSAALNYSQMLKVYRALLTEGVSLRDIVTIATVLVASSAVTKDPILLAADV FT RLALRRSITHPFVRKGELAVYTLNNELENLLSSVVNQAQQAGKVMLDSVPVDPNMLNQF FT QNNMPQVKEQMKAAGKEPVLLVAPQLRPLLARYARLFAPGLHVLSYNEVADDLQLKIMG FT SLS" FT misc_feature complement(274850..276847) FT /gene="lfhA" FT /locus_tag="ROD_02271" FT /note="HMMPfam hit to PF00771, Bacterial type III secretion FT FHIPEP, score 1.2e-268" FT /inference="protein motif:PFAM:PF00771" FT misc_feature complement(join(276002..276070,276131..276199, FT 276242..276310,276512..276580,276656..276724, FT 276743..276811,276824..276883)) FT /gene="lfhA" FT /locus_tag="ROD_02271" FT /note="7 probable transmembrane helices predicted for FT ROD02271 by TMHMM2.0 at aa 13-32, 37-59, 66-88, 114-136, FT 204-226, 241-263 and 284-306" FT misc_feature complement(276425..276496) FT /note="PS00994 Bacterial export FHIPEP family signature." FT /inference="protein motif:Prosite:PS00994" FT CDS complement(276903..278042) FT /transl_table=11 FT /gene="lfhB" FT /locus_tag="ROD_02281" FT /product="lateral flagellar export/assembly protein" FT /db_xref="GOA:D2TJ06" FT /db_xref="InterPro:IPR006135" FT /db_xref="InterPro:IPR006136" FT /db_xref="UniProtKB/TrEMBL:D2TJ06" FT /protein_id="CBG87008.1" FT /translation="MADSSSEEKTEKPSAQKLRKAREEGQIPRSKDMGLAASLFAAFMV FT ISSSFPWYEDFVRESFVSVHQYAQEINNPAIVGQFLQHHLLIMAKFILTLLPMPAAALA FT ASLIPGGWLFLPKKMLPDFSKVNPLKGIGRLFSAEHLVETGKMMVKAVVILVMLWLSLR FT NNFASFLGLQALWFKQAVSDGLALYSSVMRNFVILFVFFAVIDVPLAKKMFTKGLKMTK FT QEVKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKADVVITNPTHYAVALQYDQSR FT AAAPFVVAKGTDEIALYIRQVAAESQVEVVEFPKLARSVYYTTQINQQIPFQLYRAIAH FT VLTYVLQMKHWRDGTQPRPLLNRHISIPKEVLKLDAENN" FT misc_feature complement(277005..278030) FT /gene="lfhB" FT /locus_tag="ROD_02281" FT /note="HMMPfam hit to PF01312, Type III secretion exporter, FT score 4.1e-105" FT /inference="protein motif:PFAM:PF01312" FT misc_feature complement(join(277413..277472,277515..277583, FT 277698..277766,277884..277943)) FT /gene="lfhB" FT /locus_tag="ROD_02281" FT /note="4 probable transmembrane helices predicted for FT ROD02281 by TMHMM2.0 at aa 34-53, 93-115, 154-176 and FT 191-210" FT CDS complement(278032..278814) FT /transl_table=11 FT /gene="lfiR" FT /locus_tag="ROD_02291" FT /product="flagellar biosynthetic protein" FT /db_xref="GOA:D2TJ07" FT /db_xref="InterPro:IPR002010" FT /db_xref="UniProtKB/TrEMBL:D2TJ07" FT /protein_id="CBG87009.1" FT /translation="MRESDITQLANLVLGLWFPFVRIMAFIRYVPVFDNAALTIRVRII FT LSLALAIVITPMIPHPVPDSLLSMNSLILTAEQILWGMLFGLMFQFLFLALQLAGQILS FT FNMGMSMAVMNDPGSGASTTVLAELINVYAVILFFAMDGHLLLVSVLYKGFTYWPIGNA FT LHPQSLRTLALAFSWVLGSAMLLALPTTFIMLIVQGCFGLLNRVAPPLNLYSLGFPINM FT LAGLICFATLLYNLPDHYLHLANFILKQLDALKGHYGG" FT misc_feature complement(278059..278796) FT /gene="lfiR" FT /locus_tag="ROD_02291" FT /note="HMMPfam hit to PF01311, Type III secretion system FT inner membrane R protein, score 3.9e-31" FT /inference="protein motif:PFAM:PF01311" FT misc_feature complement(join(278116..278184,278203..278271, FT 278362..278430,278515..278583,278626..278685, FT 278719..278787)) FT /gene="lfiR" FT /locus_tag="ROD_02291" FT /note="6 probable transmembrane helices predicted for FT ROD02291 by TMHMM2.0 at aa 10-32, 44-63, 78-100, 129-151, FT 182-204 and 211-233" FT misc_feature complement(278215..278247) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(278816..279088) FT /transl_table=11 FT /gene="lfiQ" FT /locus_tag="ROD_02301" FT /product="lateral flagellar export/assembly protein" FT /db_xref="GOA:D2TJ08" FT /db_xref="InterPro:IPR002191" FT /db_xref="UniProtKB/TrEMBL:D2TJ08" FT /protein_id="CBG87010.1" FT /translation="MLTIDVAADIVASGIKVVIILVSLLVVPSLLVGLLVSIFQAVTQI FT NEQTLSFLPRLIVTLVVLGVCGKWMIVQLDDLCIHLFTQAATLVQ" FT misc_feature complement(278849..279076) FT /gene="lfiQ" FT /locus_tag="ROD_02301" FT /note="HMMPfam hit to PF01313, Bacterial export protein FT FliQ, family 3, score 6e-13" FT /inference="protein motif:PFAM:PF01313" FT misc_feature complement(join(278867..278935,278972..279040)) FT /gene="lfiQ" FT /locus_tag="ROD_02301" FT /note="2 probable transmembrane helices predicted for FT ROD02301 by TMHMM2.0 at aa 17-39 and 52-74" FT CDS complement(279100..279858) FT /transl_table=11 FT /gene="lfiP" FT /locus_tag="ROD_02311" FT /product="lateral flagellar export/assembly protein" FT /db_xref="GOA:D2TJ09" FT /db_xref="InterPro:IPR005837" FT /db_xref="InterPro:IPR005838" FT /db_xref="UniProtKB/TrEMBL:D2TJ09" FT /protein_id="CBG87011.1" FT /translation="MKRSATLTLALGIALFALSPFACAQGGEIPLLNVVTHGASQEYSV FT KIQVLILMTLVGLLPTLVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALCLTML FT VMRPIWLNIYDRAVVPFENDQMTLSDALSTAATPLKRFMLAQTNKKAMAQIMTIADVKG FT DAADQDLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSL FT PFKLMLFVLIDGWSLTVGTLTSSIRGLGLG" FT misc_feature complement(279130..279705) FT /gene="lfiP" FT /locus_tag="ROD_02311" FT /note="HMMPfam hit to PF00813, Type III secretion system FT inner membrane P protein, score 3.9e-95" FT /inference="protein motif:PFAM:PF00813" FT misc_feature complement(join(279151..279219,279238..279306, FT 279526..279585,279622..279714,279772..279840)) FT /gene="lfiP" FT /locus_tag="ROD_02311" FT /note="5 probable transmembrane helices predicted for FT ROD02311 by TMHMM2.0 at aa 7-29, 49-79, 92-111, 185-207 and FT 214-236" FT misc_feature complement(279154..279192) FT /note="PS01061 Flagella transport protein fliP family FT signature 2." FT /inference="protein motif:Prosite:PS01061" FT misc_feature complement(279289..279336) FT /note="PS01060 Flagella transport protein fliP family FT signature 1." FT /inference="protein motif:Prosite:PS01060" FT misc_feature complement(279589..279717) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT /inference="protein motif:Prosite:PS00041" FT sig_peptide complement(279787..279858) FT /gene="lfiP" FT /locus_tag="ROD_02311" FT /note="Signal peptide predicted for ROD02311 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.869 between residues 24 and 25" FT CDS complement(279855..280226) FT /transl_table=11 FT /gene="lfiN" FT /locus_tag="ROD_02321" FT /product="lateral flagellar C-ring switch protein" FT /db_xref="GOA:D2TJ10" FT /db_xref="InterPro:IPR001172" FT /db_xref="InterPro:IPR001543" FT /db_xref="UniProtKB/TrEMBL:D2TJ10" FT /protein_id="CBG87012.1" FT /translation="MSKQEDILEQGFELTTEAPAAPANSATEALVTRLEDRFSESMSLL FT KRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVVVNE FT KYGLRVLEFNTQEINDLAP" FT misc_feature complement(279876..280106) FT /gene="lfiN" FT /locus_tag="ROD_02321" FT /note="HMMPfam hit to PF01052, Surface presentation of FT antigens (SPOA) protein, score 1.9e-16" FT /inference="protein motif:PFAM:PF01052" FT CDS complement(280219..281085) FT /transl_table=11 FT /gene="lfiM" FT /locus_tag="ROD_02331" FT /product="lateral flagellar C-ring switch protein" FT /db_xref="GOA:D2TJ11" FT /db_xref="InterPro:IPR001543" FT /db_xref="UniProtKB/TrEMBL:D2TJ11" FT /protein_id="CBG87013.1" FT /translation="MLKYSQTPGIFKLEGNRLGRPYHRLPSLFTGNFDTIESHLGNYFL FT KKHRTNITLKKINCEMDVINKSAELMISQMGHLAFDIDRSLLLTLLGNFYGLDASLTEI FT NSQDNLPTKTETRLKSRLAMDIGALIFNKNTSGVPLALKLDSSTVQTHWAYQLTFVLGD FT NEDGGFRILLDDAHTDYILNLIRRSEHNQGKPAADKAAVAVEKKKLVKEIIHTLPLKMQ FT VKIAELPLSVADLATIRPGDILPFTLPDSFPVSIGKSELFTALIVEDKDKLFLSELMSK FT TSEKSYE" FT misc_feature complement(280240..280458) FT /gene="lfiM" FT /locus_tag="ROD_02331" FT /note="HMMPfam hit to PF01052, Surface presentation of FT antigens (SPOA) protein, score 0.041" FT /inference="protein motif:PFAM:PF01052" FT CDS 281695..282681 FT /transl_table=11 FT /gene="lafK" FT /locus_tag="ROD_02351" FT /product="lateral flagellar RpoN-interacting regulatory FT protein" FT /db_xref="GOA:D2TJ12" FT /db_xref="InterPro:IPR002078" FT /db_xref="InterPro:IPR002197" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR009057" FT /db_xref="UniProtKB/TrEMBL:D2TJ12" FT /protein_id="CBG87014.1" FT /translation="MFELIAEASSSINAFSLARRVAAFNVPVLIQGETGTGKECVAKFI FT HAIAFGQNENAPYIGVNCAAIPENMLEATLFGYDKGAFTGAVATVPGKMELANNGTLLL FT DEIGDMPLALQAKILRVLQEQQVERLGSNRQIKLNFRLIACTNKNLEAEVAAGRFREDL FT YYRLSVVPVNIPPLRERTQDIIPLAESFIKKYSTVLVKNIRLSESTRRALLNYSWPGNV FT RQLENAIQRGMILNRDGVIYPDTLGLPSSKTCDSVEAEWQTPPRLPVNGNGNLGQHGRS FT AQYQYIADLMRKYHGNKNKIADLLGITPRALRYRLASMRKQGIEVYS" FT misc_feature 281704..282372 FT /gene="lafK" FT /locus_tag="ROD_02351" FT /note="HMMPfam hit to PF00158, RNA polymerase sigma factor FT 54, interaction, score 6.6e-128" FT /inference="protein motif:PFAM:PF00158" FT misc_feature 281776..281817 FT /note="PS00675 Sigma-54 interaction domain ATP-binding FT region A signature." FT /inference="protein motif:Prosite:PS00675" FT misc_feature 281917..281964 FT /note="PS00225 Crystallins beta and gamma 'Greek key' motif FT signature." FT /inference="protein motif:Prosite:PS00225" FT misc_feature 281968..282015 FT /note="PS00676 Sigma-54 interaction domain ATP-binding FT region B signature." FT /inference="protein motif:Prosite:PS00676" FT misc_feature 282346..282375 FT /note="PS00688 Sigma-54 interaction domain C-terminal part FT signature." FT /inference="protein motif:Prosite:PS00688" FT misc_feature 282529..282651 FT /gene="lafK" FT /locus_tag="ROD_02351" FT /note="HMMPfam hit to PF02954, Helix-turn-helix, Fis-type, FT score 1.1e-07" FT /inference="protein motif:PFAM:PF02954" FT misc_feature 282580..282645 FT /note="Predicted helix-turn-helix motif with score FT 1653.000, SD 4.82 at aa 296-317, sequence FT GNKNKIADLLGITPRALRYRLA" FT CDS 282718..283074 FT /transl_table=11 FT /gene="lfiE" FT /locus_tag="ROD_02361" FT /product="lateral flagellar basal body component protein" FT /db_xref="GOA:D2TJ13" FT /db_xref="InterPro:IPR001624" FT /db_xref="UniProtKB/TrEMBL:D2TJ13" FT /protein_id="CBG87015.1" FT /translation="MSITNIQPAGTMQAQMLREMQQMQAVARTPVLSSMQISAAGEASS FT TVSFHRIMQGALSHVDQFQQAAEEKQTAIDMGKSDDLAGAMIASQQASLSFSALVQVRN FT KIATGFNDLMSMSI" FT misc_feature 282784..283071 FT /gene="lfiE" FT /locus_tag="ROD_02361" FT /note="HMMPfam hit to PF02049, Flagellar hook-basal body FT complex protein FliE, score 9e-12" FT /inference="protein motif:PFAM:PF02049" FT CDS 283079..284743 FT /transl_table=11 FT /gene="lfiF" FT /locus_tag="ROD_02371" FT /product="lateral flagellar M-ring protein" FT /db_xref="GOA:D2TJ14" FT /db_xref="InterPro:IPR000067" FT /db_xref="InterPro:IPR006182" FT /db_xref="InterPro:IPR013556" FT /db_xref="UniProtKB/TrEMBL:D2TJ14" FT /protein_id="CBG87016.1" FT /translation="MNELIKKLTHSFPAFAFRLDGNRRWMLLAAAAVAATAIIVSLLWN FT SNHGYVSLYGRQENLPVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMALAAKGV FT QALLPNGYELMDKDEVLGSSQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALNEES FT SFVVSDRPQNSASVVVRLHYGAKLDMDQVNAIVHLVSGSIPGLKATQVSVVDQAGNLLT FT DGTGAGEAVAATTRKHDQILQDIQDKTRASVANVLDSLVGPGNYRISVMPDLDLSDIDE FT TREHYGNEPKVNREENVQDSDTNQIAMGIPGSLSNRPPVAPNQVTNNASATTAESNPPQ FT ALSKHSESKRDYSYDRSVQHIQYPGFTVKRLKVAVVLNQEAPALKNWTPEQTRQLTDLL FT NNAAGIDTQRGDNLSLSLLRFVPPKTPVEPVIPLWKDESVLAWARMIGCGLLALLLLLF FT VVRPMMKRLTAVRQSLPALEKVAASVPAIEPQFAAAEDDRKSIELPSFPGDDSLPPQSS FT GLEVKLEFLQKLAMSDTDRVAEVLRQWITSNERIDNK" FT sig_peptide 283079..283189 FT /gene="lfiF" FT /locus_tag="ROD_02371" FT /note="Signal peptide predicted for ROD02371 by SignalP 2.0 FT HMM (Signal peptide probability 0.603) with cleavage site FT probability 0.241 between residues 37 and 38" FT misc_feature 283133..283768 FT /gene="lfiF" FT /locus_tag="ROD_02371" FT /note="HMMPfam hit to PF01514, Secretory protein YscJ/FliF, FT score 2.1e-51" FT /inference="protein motif:PFAM:PF01514" FT misc_feature join(283151..283210,284399..284458) FT /gene="lfiF" FT /locus_tag="ROD_02371" FT /note="2 probable transmembrane helices predicted for FT ROD02371 by TMHMM2.0 at aa 25-44 and 441-460" FT misc_feature 283847..284338 FT /gene="lfiF" FT /locus_tag="ROD_02371" FT /note="HMMPfam hit to PF08345, Flagellar M-ring C-terminal, FT score 3.8e-54" FT /inference="protein motif:PFAM:PF08345" FT CDS 284721..285572 FT /pseudo FT /transl_table=11 FT /gene="lfiG" FT /locus_tag="ROD_02381" FT /product="lateral flagellar C-ring switch protein FT (fragment)" FT /note="pseudogene, C-terminus missing, truncated by FT prophage CRP28 insertion" FT misc_feature complement(285573..325997) FT /note="prophage CRP28" FT CDS complement(285654..286226) FT /transl_table=11 FT /locus_tag="ROD_02391" FT /product="putative phage tail fibre protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ15" FT /protein_id="CBG87018.1" FT /translation="MMQIKEITSPRYTESGAIDCDVLFEEMEAPVPYTATPDDTAKTGQ FT QIWQELQSGKWGEITPFTASPELIAAAKDAKKREIEAWRTEQEAQPFTFEWNGHTWNAG FT PDSMTRLYPVVMAAKSDTARTALAWGDADNQQVKLSMPELEELAAAMAQAQVERNDEIY FT QRQREMKEELNNLDDLRSIRAMTISSS" FT CDS complement(286223..287839) FT /transl_table=11 FT /locus_tag="ROD_02401" FT /product="putative phage tail fibre protein" FT /db_xref="InterPro:IPR013609" FT /db_xref="InterPro:IPR013783" FT /db_xref="UniProtKB/TrEMBL:D2TJ16" FT /protein_id="CBG87019.1" FT /translation="MSVLISGALINGAGVPMAGCKIYLDALVNTSEVVTESFAVIETDA FT AGQYAFEAQKGKYTVHIKQKNGPKCCVGDISVYDDSKPGTLNDFLTALDEGDLKPDVVK FT RFEEMVAQAQQSAEAAAESEQQAGQHVADAQQIKSDCETLADNVQQNTNAVEENTQRVE FT QLASEVGLHAGQVQQGVQNVTDAVKKAQQAAKNSADSATDSKNSADNAALSEQNAQKHA FT QKAEQHEQQTKQYAQDAATAAESAENAKGEIDEILDGGYLKIKNNFQEIVDAGPSALAQ FT AQWNLQISGVKNKQVIATPYTWPSRTEYEQRVHLPLAGAYGFGYTFEDKSQGRINLNEG FT YTGSWWSQWVKPGRYYVTTSDKQYLTPDGGTYGVVDALWLNGSGYNDASKVLKILAFYD FT NDGYLHIGRRAGQSNGSISWRKLASLSDVRAMLYSYIYNNYNREWRDPELGGLILASYQ FT GTADGDTNIKVSRGQTYPGSRLAPVAIECPFTPSGTYAATPRFYITGCKSKSLPGTYIS FT LSGAPTTYSDQAFVALFMRIA" FT misc_feature complement(287438..287839) FT /locus_tag="ROD_02401" FT /note="HMMPfam hit to PF08400, Prophage tail fibre FT N-terminal, score 2.5e-59" FT /inference="protein motif:PFAM:PF08400" FT CDS complement(287885..288460) FT /transl_table=11 FT /locus_tag="ROD_02411" FT /product="putative phage tail fibre assembly protein" FT /db_xref="InterPro:IPR003458" FT /db_xref="UniProtKB/TrEMBL:D2TJ17" FT /protein_id="CBG87020.1" FT /translation="MTFKMSAEAQTIRVFNYLDGTNEFIGESDAYIPPHTGLPANSTDI FT APPDIPAGFAAVFNADEMKWHLMEDHRGKTVYSTETGVAVTVSELGSLPENVTSVSPDG FT EYQRWNGSQWVTDEEARRNALINQAAEKKAGLLKQMGEQIAVLQDAVDFGEATPEEQEQ FT LTALRKLRIKLNRIQPENAPDIDWSDFE" FT misc_feature complement(287900..288304) FT /locus_tag="ROD_02411" FT /note="HMMPfam hit to PF02413, Phage tail assembly FT chaperone gp38, score 2.9e-41" FT /inference="protein motif:PFAM:PF02413" FT CDS complement(288460..289443) FT /transl_table=11 FT /locus_tag="ROD_02421" FT /product="putative phage tail fibre protein" FT /note="similar to Mu protein S (tail fibre)" FT /db_xref="GOA:D2TJ18" FT /db_xref="InterPro:IPR005003" FT /db_xref="InterPro:IPR005068" FT /db_xref="InterPro:IPR011083" FT /db_xref="UniProtKB/TrEMBL:D2TJ18" FT /protein_id="CBG87021.1" FT /translation="MQNLMPPVNTPDKLFHDGDPTQGIEGTIVYAEYMNNHQAATRDLQ FT QEVINVLKEAGVTPDPKKQNQLVEALALYVGKKVPDASLTKKGIVQLSSATDSDSEELA FT ATPKAIKALAEKIADLQGTALPVGTPIPWPSDSVPSGYALMQGQSFDKGSYPKLAVAYP FT SGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASNTDLGTKTTSSFDYGTKTV FT STFNHGTKSTNNTGNHTHSVGGVYGGDSVGGKQRVQASGSNQISSTAGAHAHTVDIGQH FT NHTVGIGAHAHTVALGAHGHTITVNPTGNTENTVKNIAYNYIVRLA" FT misc_feature complement(288550..288591) FT /locus_tag="ROD_02421" FT /note="HMMPfam hit to PF03335, Phage tail fiber repeat, FT score 0.31" FT /inference="protein motif:PFAM:PF03335" FT misc_feature complement(288604..288645) FT /locus_tag="ROD_02421" FT /note="HMMPfam hit to PF03335, Phage tail fiber repeat, FT score 0.52" FT /inference="protein motif:PFAM:PF03335" FT misc_feature complement(288706..288747) FT /locus_tag="ROD_02421" FT /note="HMMPfam hit to PF03335, Phage tail fiber repeat, FT score 1.3" FT /inference="protein motif:PFAM:PF03335" FT misc_feature complement(288832..288873) FT /locus_tag="ROD_02421" FT /note="HMMPfam hit to PF03335, Phage tail fiber repeat, FT score 0.77" FT /inference="protein motif:PFAM:PF03335" FT misc_feature complement(288919..289062) FT /locus_tag="ROD_02421" FT /note="HMMPfam hit to PF07484, Phage Tail Collar, score FT 1.6e-19" FT /inference="protein motif:PFAM:PF07484" FT misc_feature complement(289066..289197) FT /locus_tag="ROD_02421" FT /note="HMMPfam hit to PF03406, Phage tail fiber repeat 2, FT score 6.6e-12" FT /inference="protein motif:PFAM:PF03406" FT CDS complement(289443..290015) FT /transl_table=11 FT /locus_tag="ROD_02431" FT /product="hypothetical prophage protein" FT /note="similar to Mu protein gp48" FT /db_xref="InterPro:IPR018755" FT /db_xref="UniProtKB/TrEMBL:D2TJ19" FT /protein_id="CBG87022.1" FT /translation="MNMVDLFRAMLPPVSYDQNGKYISAELMAEANVMEAVKASAARVL FT AQITPLQASMTLSDWERVYGVVPREGATQQERRQNILVKMAATGGLSIPYFKSLAASLG FT YTITITEPRAFRVGINRCGDRLLIPEIRWVWQVNVIGTKTPVYRFRTGASATGEPLTAF FT GESILENTFKDLKPAFTDCYFTYEVEE" FT CDS complement(290019..291098) FT /transl_table=11 FT /locus_tag="ROD_02441" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR006949" FT /db_xref="UniProtKB/TrEMBL:D2TJ20" FT /protein_id="CBG87023.1" FT /translation="MPFPVPGVAENTERQLRDIANALPGETIDTGADSDYRIRANAVSG FT VADGLYMHQGWILRQVFPDTADPEYLELHCRTRNVFRKKATASSGPVVITGTPGKTLPA FT GAEIRGEGVSVTTTADCTVGDEGSAEVTVKSTATGAQTNASATQTATLVSPPEGINSTV FT TIKSLTGGTDRESDADLLARYLDILRRPPAGGNKYDYKRWALEVDGVTSAYVEPLRRGL FT GTVDVAITSANDLPSQELINAVLAHIEEVRPVTARDTMVLAPTKKAVDFVVRVKTSGLT FT VEQIKPQITDVITDFMNRLEPGQELIISQLETQISLISGVSDRRIITPADNVKAIINAS FT TWEWLRPGNIDIQSFPREG" FT misc_feature complement(290157..290900) FT /locus_tag="ROD_02441" FT /note="HMMPfam hit to PF04865, Phage baseplate assembly FT predicted J-like, score 1.3e-62" FT /inference="protein motif:PFAM:PF04865" FT CDS complement(291098..291448) FT /transl_table=11 FT /locus_tag="ROD_02451" FT /product="hypothetical prophage protein" FT /db_xref="GOA:D2TJ21" FT /db_xref="InterPro:IPR010877" FT /db_xref="InterPro:IPR015801" FT /db_xref="UniProtKB/TrEMBL:D2TJ21" FT /protein_id="CBG87024.1" FT /translation="MDQTISPATGDYERRRIYTLHNAVYLRLATPLGSYWADASLGSRL FT HELKREKDVSRVHRLAAQYASQALQPLLDDGRAKSITVDTKAGQRGWLLLLITVTDNAG FT TPQTFEHPVRIM" FT misc_feature complement(291104..291397) FT /locus_tag="ROD_02451" FT /note="HMMPfam hit to PF07409, Phage GP46, score 2.4e-31" FT /inference="protein motif:PFAM:PF07409" FT CDS complement(291502..292152) FT /transl_table=11 FT /locus_tag="ROD_02461" FT /product="putative phage base plate assembly protein" FT /db_xref="InterPro:IPR013046" FT /db_xref="InterPro:IPR014462" FT /db_xref="UniProtKB/TrEMBL:D2TJ22" FT /protein_id="CBG87025.1" FT /translation="MWDKVNQRVQQALAAVRQAFRVVTGTVDSSTKVQLLQLNGLAGEQ FT LDGAEYFQHYGLTTSPPPGSMGIAVPLNGNTSHTVVVATEHGAYRLTELKPGEVALYTD FT EGAKIVLKRGRVIETECDVYRVKCKRYEVEAEENATFTTPLLTASDRLTVEGKITGNGG FT MAISGGKGYTATFEGDINHVGGVITSVDVTINGVKIGTHKHPTPHGMSDTPVN" FT misc_feature complement(291517..292095) FT /locus_tag="ROD_02461" FT /note="HMMPfam hit to PF06890, Bacteriophage Mu Gp45, score FT 5.4e-64" FT /inference="protein motif:PFAM:PF06890" FT CDS complement(292152..293363) FT /transl_table=11 FT /locus_tag="ROD_02471" FT /product="putative phage tail protein" FT /db_xref="InterPro:IPR023399" FT /db_xref="UniProtKB/TrEMBL:D2TJ23" FT /protein_id="CBG87026.1" FT /translation="MPTQNNDDKISLVIAGRSHSDWSSYRIDSDFLKAADGWQLQLGLP FT EKVFPADIVRGAPVRLQVGDETVLSGRVDSVRRSVSRQSCTLTLSGRDDAAILVDCAAP FT VFSANQLTLDEVIDRIVRPLGIQRIRIQASGVSRNDKVVIEPGMRAWDALAKAAAGRGL FT WPWFEPDGTLVVGGPDYTTTPVDTLIMKLDGTGNNVMELDDTRSINGCFSELTVLAQSH FT ARRADSKKQVAVVPLDIWNEDGSVRTLSGQDSGNTGSGQTGIHNMKAVATDPTVDYYRP FT QIITQGDTSNMEQVNWRAKKMMSDARLSGLDIVALVAGHRTADGVLWQPGQRVRIVSEP FT HGIDAIFFLMGREFSGGRNGQTTRLRFKEDGVWIPDAFPREKKRHHRRGKKKKEVAIVK FT VWEK" FT misc_feature complement(292224..293345) FT /locus_tag="ROD_02471" FT /note="HMMPfam hit to PF06893, Bacteriophage Mu P, score FT 2.1e-87" FT /inference="protein motif:PFAM:PF06893" FT CDS complement(293347..294696) FT /transl_table=11 FT /locus_tag="ROD_02481" FT /product="putative phage DNA circularisation protein" FT /db_xref="InterPro:IPR009826" FT /db_xref="UniProtKB/TrEMBL:D2TJ24" FT /protein_id="CBG87027.1" FT /translation="MGWAENLQNASFRGVQFDVLNTDEQISRDHAVYEYPFVDGADLHD FT LGRKARPFRMTAFLWGEYYEYKLEKLIAALDEGGDGELIHPVYGSVPSVIVTGYSIRHD FT AESPDSCTIDMSFLENRTGSALFSTPLPELFAQQLFEELDKLLAQLSELFDAVTAPLKT FT INSVIKKIQTVRATLVNTLLTFKSDFLSSIDNMMSLASEPGKFIGGLAEVLEIHTSDVG FT HAVPVLERTDSATTTGLTGEDSVASSATVMTCWNEVMADMDELVALPVALVSGDKTPSV FT ALPPDASVEDVQDVKAAYAVLAASELASVATAILSDEAQSEQLIPADIGRLVGDVRTRL FT QAAITLFRERYESERERITETVSPLGLMYPGIIQSMKNVAASVQDVGLLVLSRRPPLTQ FT KQVQADSCLLLLAWQWYGDYSRAAELQRLNPQLRDPNNITAGMVINAYAK" FT misc_feature complement(294412..294690) FT /locus_tag="ROD_02481" FT /note="HMMPfam hit to PF07157, DNA circulation, N-terminal, FT score 2.7e-31" FT /inference="protein motif:PFAM:PF07157" FT CDS complement(294696..296978) FT /transl_table=11 FT /locus_tag="ROD_02491" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR010090" FT /db_xref="UniProtKB/TrEMBL:D2TJ25" FT /protein_id="CBG87028.1" FT /translation="MAGNFKVGMTLTAKDEASQVLEKGQKQVIKATEGVTKATRKAGAE FT QKRTEQESINSTKKAAKEIQRAARARETLGIRAEREIRREIYLTVASYNRLARAGFESA FT QEQERAMQATREKARALKRELDGVTQAQMKMAKTPVIPEQGRFARAAAFGGNAVTTGAG FT IAAGAAIMAQPVKKQMSYERQLTMMANTAFSDGGLEGRQSGREKLKNSIRAAVTYGGGT FT KEDAADAMNEMLASGAFSWDTANNLLPQIMKFATASGASPRDLVTMAAKAKQTFGLTDN FT DLPAMFNMAIAAGKAGNFELRDMAEHLGPQMALAGNAGMKGLDGFQKLLAFNEVAGIAA FT GSSSEAGNNVVNLLAKLFSSESATRAKSITIDGKGIDLPGTLTRAMENGIDPIEAFSRL FT ADKVAANNKQYQELQKRLAATKDKGQQDKILESMAKILEGFGVGELVGDMQALKAILAY FT RNNPEYRKQVEAEISQQRTLPEGQRAGDVDFKFISDTNDFKTGQAKNTLEFSQMDSMKK FT LADASGAVADAISWAGEEFPGLTTAVVGATTAIEAMTAAALTWAGIKILTGSKPGGKAG FT EVVGDVIENTVKKGKGFKFPGIAGGLLSFGSTVTALATATSPEEDAAVEGSEERWKNIR FT AKYPQWLIDAAREKYQPWWQFGEGYSTENEKWIQQYLDELKKTGVIAGDSLPTPEQVRQ FT QAGMAAPEPASKPPGRINQPEYLTHWGPPASPINFTTQLVLDGQVVAEAVNKYNLQDGN FT RGTGGTY" FT CDS complement(297141..297518) FT /transl_table=11 FT /locus_tag="ROD_02501" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ26" FT /protein_id="CBG87029.1" FT /translation="MINTQTGELSDGVVFNGTVHKNFELRLPVMRDNGQALEETEERFQ FT TVDGFAADYYYRCAVMAATLVRLGDIPQEELTADLLHDNMTPDDFNILLASRNVLKVKR FT NGGNPGSPDSGSQSSSSGATE" FT CDS complement(297521..297895) FT /transl_table=11 FT /locus_tag="ROD_02511" FT /product="hypothetical prophage protein" FT /note="similar to Mu tail tube protein M" FT /db_xref="UniProtKB/TrEMBL:D2TJ27" FT /protein_id="CBG87030.1" FT /translation="MSIKEYVGSIVLEVDSQEIEITDFDVQINTGRKLVKTMNKTGRAK FT GFARGIATYDISVSAVIPDTNEPDWENLEGVKISIYPLSNSGKRTSYLDCFTVEVGEKY FT TVDSEAKIDIKMAALRKVTG" FT CDS complement(297908..299329) FT /transl_table=11 FT /locus_tag="ROD_02521" FT /product="putative phage tail sheath protein" FT /db_xref="InterPro:IPR007067" FT /db_xref="UniProtKB/TrEMBL:D2TJ28" FT /protein_id="CBG87031.1" FT /translation="MSEIQFDTISGGIRKPGVHFEFNTRLAVNTLPGNEQRVLVIGPML FT SGGTATPLNAVSVYSEDEADLYFGAGSLAAAMARAAINANSYLQLDVIGIADSGAGQAA FT TGAVTVSGTAISSGTLSVWVAGEQVTVDVETGDEPSKIIPALVEAMTQTPSLLVTGEYK FT SEASQLTVTTRTKGAWGNDITLSASTTAGGLTVSATPMANGEMDPDIQPALDAVFAAGH FT NILICPFSTTPALAALKQHLEKTGNAMEQRGAIGCAGWTGSLGNGITLAAGVNSGRVSV FT PWYRGSVKLPAVLAAIYGAVMAGEEDPARPLNSLALSGLDVVAMSQRESRNEQENALHN FT GLTPVEVGPGNTVQIVRAVSTYTVNAQGVTDVSLLDITSIRTLDYTRKACRERISLRFP FT REKLSIRTIAKVESELYDVLIKLEEAEILENVEANKAKLRVQRNGKDANRLDCVVPADV FT VNGLHVFAGRIDMIL" FT misc_feature complement(297911..299320) FT /locus_tag="ROD_02521" FT /note="HMMPfam hit to PF06274, Bacteriophage Mu tail FT sheath, score 4.4e-151" FT /inference="protein motif:PFAM:PF06274" FT CDS complement(299322..299555) FT /transl_table=11 FT /locus_tag="ROD_02522" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ29" FT /protein_id="CBG87032.1" FT /translation="MKVKAAPGMKFPMEDNARKYITTEAVTVENTAYYRRAVQDGDLIL FT VKAEPETTVTAEQDAVQVKAKAKREKQVDSDE" FT CDS complement(299545..300198) FT /transl_table=11 FT /locus_tag="ROD_02531" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR014972" FT /db_xref="UniProtKB/TrEMBL:D2TJ30" FT /protein_id="CBG87033.1" FT /translation="MITDIERALVERLRCGLGHMVQDVRTYAGELDEDPGRIVRSLPAA FT WVTFGGIVKTERYSTSRRKYIATGRFVVVVGDYNTRSEQSARQGGTVRDEVGTNQLVES FT VRRLLTGQDLGLEIDYFEPGRVRTLFNTGVAERAMSVFACEFDTRWVEHALENGKWPER FT GAEADRLFNRYHGRLSDPDPELLNLGIRYQMQDSDAEISGLTELREQQHEQNEG" FT misc_feature complement(299749..300120) FT /locus_tag="ROD_02531" FT /note="HMMPfam hit to PF08873, Protein of unknown function FT DUF1834, score 2.2e-54" FT /inference="protein motif:PFAM:PF08873" FT CDS complement(300195..300626) FT /transl_table=11 FT /locus_tag="ROD_02541" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR009752" FT /db_xref="UniProtKB/TrEMBL:D2TJ31" FT /protein_id="CBG87034.1" FT /translation="MSYATPEQFIRAFSEREARTLTDEDMTGFIDEEKLASALARASAQ FT IDGYLVGRYRTPWPDSPGILVGYCCDIARYHLATDYRICSEEIQMRYRDAIRFLEKVAA FT GQINLGRDTSGSVIQSSSQVRIRSGSRQFGRESTRGGAF" FT misc_feature complement(300216..300620) FT /locus_tag="ROD_02541" FT /note="HMMPfam hit to PF07030, Protein of unknown function FT DUF1320, score 1.2e-34" FT /inference="protein motif:PFAM:PF07030" FT CDS complement(300630..300962) FT /transl_table=11 FT /locus_tag="ROD_02551" FT /product="hypothetical prophage protein" FT /note="similar to Mu protein gp35" FT /db_xref="UniProtKB/TrEMBL:D2TJ32" FT /protein_id="CBG87035.1" FT /translation="MEKVIEITARREGFRRCGVAHSATTKEWPVDAFTPEQLAVLKADP FT MLIVVERDKASGQNDTARGDELAAQLDAERQKVSELTAQLEEERGKVRELTAALKAAQK FT ADKKEK" FT CDS complement(300966..301874) FT /transl_table=11 FT /locus_tag="ROD_02561" FT /product="putative phage major capsid protein" FT /db_xref="InterPro:IPR018774" FT /db_xref="UniProtKB/TrEMBL:D2TJ33" FT /protein_id="CBG87036.1" FT /translation="MIVNAKNLNQIFINLKTTYQKAFDQTPTDWQKVAMEVPSGSKEND FT YSWLSRFPKMREWVGDKNVKSLEAFNYTIRNKDWEATVEVDRNDIEDDQIMGYALQARD FT AGQSAAELPADIVASLINNGFTSPCYDGQMFFDTDHLVAGKSVSNKGTKKLKVGSLAEA FT KASYGAARTAMRSLKDDEGASLRIRPNLLVVPPALEDDANYLMTAEKFPDGTPNPYRNT FT AEVLVMPELTSDSAWFLFDTSRSVKPLIFQQRKKPVFVEQTDYNSDNVFMRKKFRFGAE FT ARCNGGYGFWQMAFGSDGTTE" FT CDS complement(301885..302280) FT /transl_table=11 FT /locus_tag="ROD_02571" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ34" FT /protein_id="CBG87037.1" FT /translation="MDRNTPYRDGELNPVPVAAATEIFGGHMVAVNASGYAVPASATAS FT QITLGVSDSWADNSTGSDGDVTVLVRCGKDFLMVNSTSDPVTQSQVGKLCYVEDSVTVA FT KTDNSSARPVAGKVIGICGDGVWVHFS" FT CDS complement(302281..303450) FT /transl_table=11 FT /locus_tag="ROD_02581" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR012106" FT /db_xref="UniProtKB/TrEMBL:D2TJ35" FT /protein_id="CBG87038.1" FT /translation="MLNTLNSTPFSPSVIMPRMKMNIAALSLEITKATHSEIQLFPAGE FT FSAVDGRPHTDEVESGKWVLTAELAAQLVAQVAARATPFVIDYEHQTLRAVNNGKPAPA FT AGWFSQVEWREGAGLYATGVEWTENAAAMIAAGEYKFISPVFAYNKRGEVLELLHAALT FT NTPALDGMDAVMLAAASRLASLSTETETTTVDEELLNDLLSSLRWMLNLPVTSTAEDIK FT NELQKVVDLISNGQGTAAASVSLLALLNQKDEQIASLSANAYDPTKHIPLTAYEELQER FT YAVLAQQSGEAEAGALIQAALSDGRLLPTLEDWAKDYARRDINGFKTWLDKTTPLAALS FT STQTGGKPPKTPSPAPAQIKTGDDVDVDIAICSMMGVDPEDVARYAGDK" FT CDS complement(303606..304157) FT /transl_table=11 FT /locus_tag="ROD_02591" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR006522" FT /db_xref="UniProtKB/TrEMBL:D2TJ36" FT /protein_id="CBG87039.1" FT /translation="MSTGKLDIKIDLSAYNTTLGKLIRSVKDRRDLMTALAGSMLDAVE FT TNLEQQGRPKWMGWSPAYAKRRGPGQILQKSGRLAASIRSAVNNNEATVGTNVRYARIH FT NEGGEIRHQARTQNLYFKQYKNGSVSTRFVKKRNSNFVQSATVGAYTVNMPARPFLQLV FT QDDIDELENTANRYFARVID" FT misc_feature complement(303621..304130) FT /locus_tag="ROD_02591" FT /note="HMMPfam hit to PF05069, Phage virion morphogenesis FT (putative tail completion) protein, score 2.8e-26" FT /inference="protein motif:PFAM:PF05069" FT CDS complement(304154..305320) FT /transl_table=11 FT /locus_tag="ROD_02601" FT /product="putative head assembly protein" FT /db_xref="InterPro:IPR006528" FT /db_xref="InterPro:IPR020388" FT /db_xref="UniProtKB/TrEMBL:D2TJ37" FT /protein_id="CBG87040.1" FT /translation="MPTADDVDLGYAYTLKPEEAITYFESKGYVIGFRWHDVKDIAHAR FT AFTVAGVLKLDVLKDIRDGLTAAIADGGTFREFAAQLEPLLESKGWLGKRLIVDEDTGE FT LHGRQLTPRRLRTIFDTNIQSSYNAGRYQQQMANVADRPYFERVAVMDLHTRPKHAALN FT GFTARADDPVWAFLYPPDGYHCRCRIRARSASDVEKYGLTVQSSEGRLVEVEQEYGQPG FT QTIRTMGLKMPDGSVYTADPGFGFNPGKVAWQPELEKYDYRSARQYVTGTLTGPDFARG FT LANVSELDARQRYPLAIRSPEQVAATGAARQTVNLTADVMKRLSATDTPPTAADYVLMQ FT QTIERAEHVTQDGNAWRYALQSGDRWSVATVEDDVLTDWVMQDTPEAS" FT misc_feature complement(304751..305146) FT /locus_tag="ROD_02601" FT /note="HMMPfam hit to PF04233, Phage putative head FT morphogenesis protein, SPP1 gp7, score 2e-43" FT /inference="protein motif:PFAM:PF04233" FT CDS complement(305307..306902) FT /transl_table=11 FT /locus_tag="ROD_02611" FT /product="putative phage portal protein" FT /db_xref="InterPro:IPR009279" FT /db_xref="UniProtKB/TrEMBL:D2TJ38" FT /protein_id="CBG87041.1" FT /translation="MAQLVDIYGRPLKREALKTTQSVRVAERLRIYPDHPSRGLNIRKL FT PRILEAAERGYLPAQAMLFADMEERDGHLFAEMEKRKKALLTLDWSVEPPRNASKAEKE FT LAAAVDEWLHGIPDMEDIILNGMSSVGYGFSCQEISWAFVDKTWLPDAVTLRPHNWFIT FT LPEHNDELRLDDGNRGEDGKDGSALWPFGWLVHRYNARSGFLGSSGLFRVLVWPYLFKN FT FALRDMAEFLEIYGLPARIAYYAQGTSDEDRDNILEALVNLGHEAVAALPQGNEIEFKE FT AASGGPEAFMSMVEWAERTTSKVILGSTLTSQADGKTSTNALGNVHNEVRHDILAADAR FT QLSGMFSSLIQMMASLNGWQDIPPRRLPRLVFDVQQEADIKGVADAVNVLVNNVGMKDI FT PVSWVRKKTGIPTPKDGEEVLVPVAQRLPVQAGLSQLRERLNVAALSQQDNGEDDPAQR FT AIDRAELPAEAIAQGMNELVAPLVQAIQEGRDADEAMNVLAEAWPELPDETLRQLLTQA FT FFVADIWGRLNADS" FT misc_feature complement(305316..306902) FT /locus_tag="ROD_02611" FT /note="HMMPfam hit to PF06074, Protein of unknown function FT DUF935, score 8.9e-182" FT /inference="protein motif:PFAM:PF06074" FT CDS complement(306902..308542) FT /transl_table=11 FT /locus_tag="ROD_02621" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR006517" FT /db_xref="UniProtKB/TrEMBL:D2TJ39" FT /protein_id="CBG87042.1" FT /translation="MAKRKLSIKEFQRSLQEYIANLRQTIEAECLGFDVNPQATQARRA FT AVCDPVTGYDYFVENYFPHYVRNPAKSELHKYLFSRLPQVVASPAPENDAIAAPRGEAK FT STLVTQLFTLWTIIRAIKHYPVIIMDSIDQAYPMLEAIKAELEFNPRLKNDFPEVCGQG FT RVWRMGTIVTANNIKVTVAGSGKKLRGLRHGPYRPDLIILDDIENDEMVRNPEQRDKLH FT DWLTKTVMPLGEAGGKTDIIYIGTILHYDSVLSRTLNNPMWKTARFKAVIQWPANMKLW FT DEWEELIRNKQPEAAEALYRQNEAEMLAGSVVSWAARPLLALMKIRVRDGHDTFDSEYQ FT NDPVSGEDALFAGCIKFWVNRLDEWVFYGAVDPSLGKKNKNRDPSAILVGGFNRFTGIL FT DVVEADIRRRLPNKLIEDVIKYQREYHCLCWSFESVQFQEFLRTVLVERSAALGVPVPA FT LPVIPLEDKALRIESLQPHMANGLIRISHTHQTLIDQLRHYPKADHDDGPDCLHMLWTL FT AVSRSAKFQIHTPRSTGRDRGGRFGSGGW" FT CDS complement(308544..309284) FT /transl_table=11 FT /gene="dam" FT /locus_tag="ROD_02631" FT /product="putative prophage DNA adenine methylase" FT /note="Note the prosite PS00092 N-6 Adenine-specific DNA FT methylases signature" FT /db_xref="GOA:D2TJ40" FT /db_xref="InterPro:IPR001091" FT /db_xref="InterPro:IPR002052" FT /db_xref="InterPro:IPR002941" FT /db_xref="UniProtKB/TrEMBL:D2TJ40" FT /protein_id="CBG87043.1" FT /translation="MQKQIIGNATLYCGDVLDVLPALSERFDAVITDPPYSSGGTHKSD FT RSMAPSDKYVGHTQYAEFTGDNRDQRSWAFWCSMWISHALHRLNPGGYFMVFSDWRQLP FT ALTDAFQAGGVLWRGLVVWDKTQASRAPHTGYFRHQAEYVVWGSNGKLDKCPHGGPFPG FT VITQRVVPSEKLHMTAKPVQLMAELVKPLAPDAHVLDPFMGSGTTAIPVLARGGRFTGI FT EMTNQYFDIACARIEKAQAEAAQV" FT misc_feature complement(308583..308774) FT /gene="dam" FT /locus_tag="ROD_02631" FT /note="HMMPfam hit to PF01555, DNA methylase N-4/N-6, score FT 1.6e-09" FT /inference="protein motif:PFAM:PF01555" FT misc_feature complement(309177..309197) FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT /inference="protein motif:Prosite:PS00092" FT CDS complement(309331..309831) FT /transl_table=11 FT /locus_tag="ROD_02641" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR014926" FT /db_xref="UniProtKB/TrEMBL:D2TJ41" FT /protein_id="CBG87044.1" FT /translation="MAWSQDIRDKVRNGYIFDQLPLDIVAMKYAVPHDTARRWKTQAMK FT NGDDWDKLRAAHALAGDGLESVARTVLISLVVKCQTTLERLNQNPDIPPQESVELLASL FT SDSLSKAVASSKKILPETDRLATALEVVQRLGAFIKERHPAQYAAFLEVLEGFAKELED FT NFS" FT misc_feature complement(309337..309831) FT /locus_tag="ROD_02641" FT /note="HMMPfam hit to PF08822, Protein of unknown function FT DUF1804, score 1.3e-71" FT /inference="protein motif:PFAM:PF08822" FT CDS complement(309831..310151) FT /transl_table=11 FT /locus_tag="ROD_02651" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ42" FT /protein_id="CBG87045.1" FT /translation="MKQKENTAIALVEAAVPGRPFKFGLTQVVALHVSGECGEIKARTQ FT YADGENRYLVYYQDARKAAQLKWFGESMLEMIEDVRHPGMPVFAVTELPDDATVSDTRK FT GV" FT CDS complement(310172..310354) FT /transl_table=11 FT /locus_tag="ROD_02661" FT /product="putative prophage exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ43" FT /protein_id="CBG87046.1" FT /translation="MTRQHWTHRTPRKAARCVLALFLMMLLPLGCTDINRAGQLFDAAA FT QVCRIIDGIRQCSQN" FT sig_peptide complement(310265..310354) FT /locus_tag="ROD_02661" FT /note="Signal peptide predicted for ROD02661 by SignalP 2.0 FT HMM (Signal peptide probability 0.913) with cleavage site FT probability 0.863 between residues 30 and 31" FT CDS complement(310351..310896) FT /transl_table=11 FT /locus_tag="ROD_02671" FT /product="putative phage lysozyme" FT /note="86% ID to ROD36701" FT /db_xref="InterPro:IPR008565" FT /db_xref="InterPro:IPR018537" FT /db_xref="UniProtKB/TrEMBL:D2TJ44" FT /protein_id="CBG87047.1" FT /translation="MKSKDDIFDEVLGKEGGYVNHPDDKGGPTKWGITEKVARAHGYRG FT DMRDLTREQALDILEADYWYGPRFDQVAALSPDIAAELCDTGVNMGPSVASKMLQRWLN FT VFNLRGRLYPDMDADGRIGPRTISALRAFLNNRGQDGERVMLTALNCTQGDRYLELAEK FT REANESFVYGWLEERVAV" FT misc_feature complement(310360..310881) FT /locus_tag="ROD_02671" FT /note="HMMPfam hit to PF05838, Protein of unknown function FT DUF847, score 5.4e-97" FT /inference="protein motif:PFAM:PF05838" FT CDS complement(310880..311176) FT /transl_table=11 FT /locus_tag="ROD_02681" FT /product="putative prophage membrane protein" FT /db_xref="InterPro:IPR008473" FT /db_xref="UniProtKB/TrEMBL:D2TJ45" FT /protein_id="CBG87048.1" FT /translation="MESSLAGIVNVWLCLAIVLGLFVYRRHGAAHKPMITWLAYWLMLG FT YIIIPFRWLSGTYTHSSWLVVALNLVFCALIVWAHGNLSKILSLLRHPHEIKR" FT misc_feature complement(310907..311161) FT /locus_tag="ROD_02681" FT /note="HMMPfam hit to PF05449, Protein of unknown function FT DUF754, score 1.3e-19" FT /inference="protein motif:PFAM:PF05449" FT misc_feature complement(join(310934..311002,311015..311068, FT 311105..311164)) FT /locus_tag="ROD_02681" FT /note="3 probable transmembrane helices predicted for FT ROD02681 by TMHMM2.0 at aa 5-24, 37-54 and 59-81" FT CDS complement(311166..311558) FT /transl_table=11 FT /locus_tag="ROD_02691" FT /product="putative prophage membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ46" FT /protein_id="CBG87049.1" FT /translation="MSEPLSGGGAVAVTIGGASVFGLLTNTDFGVVVGAFAGALFVVTQ FT QKEIPVWRMAIHLLVAFVVGVLGAGVAASLMQWLTHYNDKPLDALCAVGVSALSIKILT FT FLYQQEISSLFGLFSRLRGGGGGNGK" FT misc_feature complement(join(311328..311396,311433..311501)) FT /locus_tag="ROD_02691" FT /note="2 probable transmembrane helices predicted for FT ROD02691 by TMHMM2.0 at aa 20-42 and 55-77" FT CDS complement(311741..312046) FT /transl_table=11 FT /locus_tag="ROD_02701" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ47" FT /protein_id="CBG87050.1" FT /translation="MGLRKKETLMTNYTALGEYTAYSEQARDAAGRRFAYMKNLASQLN FT RMAEQPDMVVQEEALQCAIADIIASENEMRAALEKANASAPLCNKPLITPDSLSRF" FT CDS complement(join(312049..312060,313502..313954)) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_02721" FT /product="hypothetical prophage protein (pseudogene)" FT /note="pseudogene, disrupted by ISCro3 insertion. Last 4 aa FT at C-terminus separated from N-terminus by IS element. FT Intact gene found in EPEC E2348/69 prophage PP9" FT repeat_region 312060..312070 FT /note="11 bp direct repeat flanking ISCro3" FT repeat_region 312071..313500 FT /note="Insertion sequence ISCro3. 1 of 11 intact ISCro3 FT elements in CR chromosome, all have 18 bp inverted repeats FT containing 2 bp mismatches, and are flanked by direct FT repeats of varying length. This element has 11 bp direct FT repeats" FT repeat_region 312071..312088 FT /note="18 bp terminal inverted repeat of ISCro3, contains 2 FT mismatches" FT CDS 312154..313491 FT /transl_table=11 FT /locus_tag="ROD_02711" FT /product="ISCro3 transposase" FT /db_xref="GOA:D2THB0" FT /db_xref="InterPro:IPR002559" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR014736" FT /db_xref="InterPro:IPR024473" FT /db_xref="UniProtKB/TrEMBL:D2THB0" FT /protein_id="CBG87052.1" FT /translation="MPLLNDLLDFSDHPLMPPPSAQLFAQHLPVEWIQHCLTLSAHATV FT RRRRLPGDMVIWMVVAMAFFRNESITDVVRRLNLSADGEAGMNLLARSAVTQARQRVGA FT APVEWLFRQTAQTWGTERYQKDDWHGLQLFAIDGAQFRTPDEPELREHYGSANTSTERQ FT SAYPVMRLVALMNLGSHILLDAATAPYRRSETLLAHSMLVTIPDNSITLFDKLFYSADL FT LLSLNRQGCNRHWLLPAWKNIAAETEESYGPGDRLLKLKVSPQARKKNPSLPEYWYARA FT VTYELNGVEKTVLTSLQADRYKAREVAELYHSRWEIEVGFRNLKSSLLNNALVLRSRKV FT ELLEQEVWGMLLAYNLIRREATKATEKHKKAASEISFKFAFQFIATEMIVLGNTVSPGT FT IPKRLEHLRGALEAVFITKRPRPSRPRAVKISKTRYPVKRNAAPLK" FT misc_feature 312550..313221 FT /locus_tag="ROD_02711" FT /note="HMMPfam hit to PF01609, Transposase, IS4-like, score FT 3.6e-29" FT /inference="protein motif:PFAM:PF01609" FT repeat_region complement(313483..313500) FT /note="18 bp terminal inverted repeat of ISCro3, contains 2 FT mismatches" FT repeat_region 313501..313511 FT /note="11 bp direct repeat flanking ISCro3" FT CDS complement(314050..314463) FT /transl_table=11 FT /locus_tag="ROD_02731" FT /product="hypothetical prophage protein" FT /note="similar to Mu protein gp16" FT /db_xref="InterPro:IPR009363" FT /db_xref="UniProtKB/TrEMBL:D2TJ49" FT /protein_id="CBG87053.1" FT /translation="MLKKMIGAIKAGQAYLGWDDALYRQTLARLTGKTSTTRCNLDELR FT IIREYMHEQGFPRKAPAGKGRRPRVAMSRKSVLSKIEALLADAGRSWAYAEGLASHMYK FT QHVIEWLTDDQLFGVMVALTKDARKRARAARKQ" FT misc_feature complement(314062..314463) FT /locus_tag="ROD_02731" FT /note="HMMPfam hit to PF06252, Protein of unknown function FT DUF1018, score 9.3e-20" FT /inference="protein motif:PFAM:PF06252" FT CDS complement(314435..314713) FT /transl_table=11 FT /locus_tag="ROD_02732" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ50" FT /protein_id="CBG87054.1" FT /translation="MKIEQIGMAAFRQQAESGGVDEFVVQRFGGVYHLFAVNRRAGVSY FT FLQERRGDYKTWLSLDRAAAFLSGIGVSRFTVRFEDNKHAEKDDRGH" FT CDS complement(314794..315057) FT /transl_table=11 FT /locus_tag="ROD_02733" FT /product="putative prophage membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ51" FT /protein_id="CBG87055.1" FT /translation="MNNGCLVAVVFIVFGACFFLVDNTTHTTTNEQESPHCVVRKNFSQ FT RTITHCDDGSATVTDGDKFIYCSTGKNGSPSCHEVTLGDGDK" FT misc_feature complement(314995..315048) FT /locus_tag="ROD_02733" FT /note="1 probable transmembrane helix predicted for FT ROD02733 by TMHMM2.0 at aa 4-21" FT misc_feature complement(315007..315039) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(315054..315173) FT /transl_table=11 FT /locus_tag="ROD_02751" FT /product="putative prophage exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ52" FT /protein_id="CBG87056.1" FT /translation="MKFSESRSNNTMKTIKVLILVIASIVSFVFGAMTERGAL" FT misc_feature complement(315072..315125) FT /locus_tag="ROD_02751" FT /note="1 probable transmembrane helix predicted for FT ROD02751 by TMHMM2.0 at aa 17-34" FT sig_peptide complement(315081..315173) FT /locus_tag="ROD_02751" FT /note="Signal peptide predicted for ROD02751 by SignalP 2.0 FT HMM (Signal peptide probability 0.998) with cleavage site FT probability 0.998 between residues 31 and 32" FT CDS complement(315182..315592) FT /transl_table=11 FT /locus_tag="ROD_02761" FT /product="putative prophage exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ53" FT /protein_id="CBG87057.1" FT /translation="MKKMVFVAALLTVTQQAQASAVIVASAAATTAAVAAANSANIASQ FT QERDAANASASALPISVKGSKQHLGFITCGKRSYEAVGSLGCTVYGDSESREIPWKTWP FT GYVLGSKLPASYEVNAVSFDHYNGVATVYFTY" FT sig_peptide complement(315536..315592) FT /locus_tag="ROD_02761" FT /note="Signal peptide predicted for ROD02761 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.944 between residues 19 and 20" FT CDS complement(315605..315781) FT /transl_table=11 FT /locus_tag="ROD_02762" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ54" FT /protein_id="CBG87058.1" FT /translation="MKNRKAKILLARRNGVGVWRWLRISNRRVRLTGCCGVMLHSCCKK FT PSAAQNRRKNHGM" FT CDS complement(315778..315954) FT /transl_table=11 FT /locus_tag="ROD_02763" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ55" FT /protein_id="CBG87059.1" FT /translation="MKNRKAIRLLLQRPVCVVELVISNHKIAVLHPFGQVAFTVNRKPT FT ASQNRRKKGYAVR" FT CDS complement(315959..316147) FT /transl_table=11 FT /locus_tag="ROD_02771" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ56" FT /protein_id="CBG87060.1" FT /translation="MNQQTRISDKSLTRLIADADKVLERNTPVADEEWWQDFRAAMLEL FT QERRRADSTESVVNTGE" FT CDS complement(316144..316434) FT /transl_table=11 FT /locus_tag="ROD_02781" FT /product="putative prophage membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ57" FT /protein_id="CBG87061.1" FT /translation="MVIDKTITIDVAMNTGLALIGYGYITFMSFRWLISSVFKQCERRR FT CKDKRVKALNAFNDAFDIDRMQQGDPARVITRGDVVILVYRSEKNEQEAAQ" FT misc_feature complement(316324..316392) FT /locus_tag="ROD_02781" FT /note="1 probable transmembrane helix predicted for FT ROD02781 by TMHMM2.0 at aa 15-37" FT CDS complement(316424..316654) FT /transl_table=11 FT /locus_tag="ROD_02791" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ58" FT /protein_id="CBG87062.1" FT /translation="MNIEFYNYGTKAKIIVTCWLWEFRRYNRVVDAALFVAPEVHHESG FT GGLLMRTVITGKTVPMLRAFKVAKQEAGNGH" FT CDS complement(316651..316878) FT /transl_table=11 FT /locus_tag="ROD_02801" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ59" FT /protein_id="CBG87063.1" FT /translation="MAFKLLSVTEAIYQPPGERHEYRMNDGSAAVEFPKYPGASRWRFY FT DSAGHRIIKRTVHNAMKAAVERHKRRFNCK" FT CDS complement(316881..317591) FT /transl_table=11 FT /locus_tag="ROD_02811" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR016868" FT /db_xref="InterPro:IPR024498" FT /db_xref="UniProtKB/TrEMBL:D2TJ60" FT /protein_id="CBG87064.1" FT /translation="MKDKYIAKIKKLLRLARGTSSPEEAANAIAKAQAYMRQHGISEND FT AELFDIQEAASAGAPSDASTPPRYMHILCDLVCKAFGVECYISGEYRASGSLKRYVRFY FT GHDSRPEIAAYAFDVLSRQMMAERKKYQDKHCKRCGPSTRVARGDQFCEGWVFGTRDVI FT AVYDVSPEEKSRLELYRKNLHNTKGLRDGDMRTAKACRGAEFAATAGFIAGKNARLHQG FT VNGQSNRPLALGRA" FT CDS complement(317774..317905) FT /transl_table=11 FT /locus_tag="ROD_02821" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ61" FT /protein_id="CBG87065.1" FT /translation="MTAITGKLNVVVNKSVFNFICIWRKPAGAGLRLNQREFIYEYR" FT repeat_region 317930..317938 FT /note="9 bp direct repeat flanking IS102" FT repeat_region 317939..318995 FT /note="Insertion sequence IS102 first identified in FT Escherichia coli pSC101 (IS5 family). 100% ID at DNA level FT (blastn), 100% ID at protein level (tblastx). Has 18 bp FT perfect inverted repeats and is flanked by 9 bp direct FT repeats. 1 of 12 identical IS102 elements in CR chromosome" FT repeat_region 317939..317956 FT /note="18 bp terminal inverted repeat of IS102" FT CDS 317971..318939 FT /transl_table=11 FT /locus_tag="ROD_02831" FT /product="IS102 transposase" FT /db_xref="InterPro:IPR002559" FT /db_xref="UniProtKB/TrEMBL:D2TIM3" FT /protein_id="CBG87066.1" FT /translation="MKDQITHPPDNTDHSVAKQKFRITNWSTYNKALINRGSLTFWLDD FT EAIQAWYESATPSSRGRPQRYSDLAITTVLVIKRVFRLTLRAAQGFIDSIFALMNVPLR FT CPDYTSVSKRAKSVNVSFKTSTRGEIAHLVIDSTGLKVFGEGEWKVRKHGKERRRIWRK FT LHLAVDSNTHEVVCADLSLNNVTDSEAFPGLIRQTHRKIRAAAADGAYDTRLCHDELRR FT KKISALIPPRKGAGYWPGEYADRNRAVANQRMTGSNARWKWTTDYNRRSIAETAMYRVK FT QLFGGSLTLRDYDGQVAEAMALVRALNKMTKAGMPESVRIA" FT misc_feature 318364..318903 FT /locus_tag="ROD_02831" FT /note="HMMPfam hit to PF01609, Transposase, IS4-like, score FT 9.3e-30" FT /inference="protein motif:PFAM:PF01609" FT repeat_region complement(318978..318995) FT /note="18 bp terminal inverted repeat of IS102" FT repeat_region 318996..319004 FT /note="9 bp direct repeat flanking IS102" FT CDS complement(318997..319485) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_02841" FT /product="hypothetical prophage protein (fragment)" FT /note="pseudogene, C-terminus missing, truncated by IS102 FT insertion" FT CDS complement(319561..319752) FT /transl_table=11 FT /locus_tag="ROD_02842" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ63" FT /protein_id="CBG87068.1" FT /translation="MNAKNFNQLYPVGTRFTHTDSAVFGCGRVVKTVAPARDFKCGCVV FT EINVEPYFVKVETLKAPH" FT CDS complement(319733..319966) FT /transl_table=11 FT /locus_tag="ROD_02851" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ64" FT /protein_id="CBG87069.1" FT /translation="MHQDIKEYRAGNSCAAYSLGASRAEQRGDYAEAEKLWRKAAQSPC FT STLRRIWAEHRAEFCANAHLKGWRPRHECEEL" FT CDS complement(319968..320612) FT /transl_table=11 FT /locus_tag="ROD_02861" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR021505" FT /db_xref="UniProtKB/TrEMBL:D2TJ65" FT /protein_id="CBG87070.1" FT /translation="MTTENKVKQYTKTQAPEGYWVDARGVMTPESLIKDIDRDREQLVG FT ELVEMVIAASASLRELKLRAFGDIQAFIDLSAEKYGAVKGGKKGNITLYSFDGRYKIQR FT AMQDRIAFDERIQTAKSLIDDCLADWTEGARPEIKAIISEAFSTDKEGNINTGRVLALR FT RLEIEDERWNNAMTLIGEAVQVIGSKSYIRVYERVGDSDEYRAIPLDIAGV" FT CDS complement(320642..320857) FT /transl_table=11 FT /locus_tag="ROD_02871" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ66" FT /protein_id="CBG87071.1" FT /translation="MAVKLEVIIYTNEKGCVLTQTTGSYSKDGASEKEFQVATRLHDVI FT KETLRNDYNGVNLFSENVAPCAHNTN" FT CDS complement(320847..321038) FT /transl_table=11 FT /locus_tag="ROD_02881" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ67" FT /protein_id="CBG87072.1" FT /translation="MSLELELTFSLDRPGKPEKTVATYQLPPDVTGEQVSDIIIKTHCF FT MNEIIFKSFDFKGEKHGG" FT CDS complement(321054..321320) FT /transl_table=11 FT /locus_tag="ROD_02891" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ68" FT /protein_id="CBG87073.1" FT /translation="MQRRNVNSLMENKTMDKQTINAVRSRARVAIHTTGGRVTGQHHRL FT PVVYACPPVGGPVWPVTEIIQTFSGLRRVVKTSCIDGCTVVWQ" FT CDS complement(321320..321670) FT /transl_table=11 FT /locus_tag="ROD_02901" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ69" FT /protein_id="CBG87074.1" FT /translation="MTGVLRMEKMALRNEIRALQSIGRNGCVYSNGTPGEIIPFVDCFV FT PGELRIDLYSREREINGTGNTSDDWDVDECCARLMIIPFEQTLQGFRRAYRLARMCARL FT PRYQSRLAFALR" FT CDS complement(321667..322560) FT /transl_table=11 FT /locus_tag="ROD_02911" FT /product="putative phage transposase" FT /db_xref="UniProtKB/TrEMBL:D2TJ70" FT /protein_id="CBG87075.1" FT /translation="MSLITQLNDVMARCGYTQTHVGRAIGRSSAVINQYLQGKYVGDVT FT DVEERISSFVSRELEKQSNRRVKAQFVSTKIADNGLEMLSYAHAYCEICVLHGEAGLGK FT TMILREYAARNRDAILIEADTGYTARALLGELCRQLGVKVRGNIHELIDVCVRELRDSG FT RLLMVDEAELLPYRALEVLRRLHDKAGIGIVLAGMPRLVTNLKGNRGEFAQLYSRVGVA FT LDMGNTLSPEDFTPIATELMPEAETPEIGEALYTYSRGNARRLFKLVRGVYRMSDVTKV FT PVSVEAIEKFSKMLIK" FT misc_feature complement(322246..322269) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(322450..322515) FT /note="Predicted helix-turn-helix motif with score FT 1173.000, SD 3.18 at aa 16-37, sequence FT YTQTHVGRAIGRSSAVINQYLQ" FT CDS complement(322578..324620) FT /transl_table=11 FT /locus_tag="ROD_02921" FT /product="putative phage transposase" FT /db_xref="GOA:D2TJ71" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR003314" FT /db_xref="InterPro:IPR009061" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR015378" FT /db_xref="UniProtKB/TrEMBL:D2TJ71" FT /protein_id="CBG87076.1" FT /translation="MFYSANELAGLPGLPGTVQGVRWTLNRITETHPEWKRKREGTKAF FT EYHIDCLPAEAQKVLRKRLTHQVLEDTQLPAVVEQKAVKNVTVRDELEVMVKCPELALR FT EVQALTDKQKAIADARILLATEVHKLREYAGMSRTAAVKHIVDGIRQGALPERIIEAAG FT TANARQGKRTGVSWGSLQEWYSAWLMARGDANQLLALLAPGHHKGTPWEQVWWLSDFFM FT FYRSWKRPTVEYAYREFSAWWHEKHANDAGMLAALPSVHAVRRVLSSVPVIVKERFRST FT GSAWRSLNPFVRRDWTSLPVNAVWVGDGHCMKMTAFNPLTGNIFRPEVTLVMDAGQRFV FT VGWSLSLSENVIAVADALRYGMAQHGIPLIYYSDNGGGEKNRVLDADITGILPRLGVEH FT HTGIPGNPQGRGVIERLNKEIPRDVALSFRTYCSKGADKETVMMQQRIMQSAIKATHKG FT KELTKRQVKARDEIPTFEQLMAAIELEVRRYNNRPHSSLPRKEDGEHYSPAAYRRKLIK FT EQNVEIDFLSPEELHEMFRPEVTRKTFRGEIQLFNNIYYSYDLAAEHGNEVRVSYDIHD FT ANSVIVRRADGSYICDAIWNGNKVDAFAKPVIEQKLEKRVRGRIARATQKIEEAKRELT FT PAITQKPDFNFGFGLERKEEKKKEELYFFASERDRNLKKDGTNNR" FT misc_feature complement(322842..323030) FT /locus_tag="ROD_02921" FT /note="HMMPfam hit to PF09299, Transposase-like, Mu, FT C-terminal, score 4e-23" FT /inference="protein motif:PFAM:PF09299" FT misc_feature complement(323361..323609) FT /locus_tag="ROD_02921" FT /note="HMMPfam hit to PF00665, Integrase, catalytic core, FT score 2.5e-10" FT /inference="protein motif:PFAM:PF00665" FT misc_feature complement(324441..324605) FT /locus_tag="ROD_02921" FT /note="HMMPfam hit to PF02316, Transposase MuA/Repressor FT CI, DNA-binding, score 3.6e-07" FT /inference="protein motif:PFAM:PF02316" FT CDS complement(324620..324856) FT /transl_table=11 FT /gene="ner" FT /locus_tag="ROD_02931" FT /product="putative prophage transcriptional regulator" FT /note="similar to Mu DNA-binding protein Ner" FT /db_xref="GOA:D2TJ72" FT /db_xref="InterPro:IPR010982" FT /db_xref="UniProtKB/TrEMBL:D2TJ72" FT /protein_id="CBG87077.1" FT /translation="MMVRNEVMNKDWHREYIVAAVHTKGFTLRELSERAGLKKDSLKNA FT LYRSCPKYERIIADAIGVEPAEIWPSRYASKAA" FT misc_feature complement(324716..324781) FT /note="Predicted helix-turn-helix motif with score FT 1039.000, SD 2.73 at aa 26-47, sequence FT FTLRELSERAGLKKDSLKNALY" FT CDS 325039..325686 FT /transl_table=11 FT /gene="cI" FT /locus_tag="ROD_02941" FT /product="putative phage repressor protein" FT /db_xref="GOA:D2TJ73" FT /db_xref="InterPro:IPR010744" FT /db_xref="UniProtKB/TrEMBL:D2TJ73" FT /protein_id="CBG87078.1" FT /translation="MTRNDDAFSFVDRGKESFRERLVKLIGNRSVRTAASDWGIPPSTL FT NNYIHKGTEPSFKIACLISDKEQVSLNWLAYGEEPTAKEGSLSNQTAQPSPDITNELVN FT ELLKRASTEVKEQLISAICDMGIKGILERLQQPTKQTKQADSDLDELENAIRRLNIRES FT LKDTICMALAGNEETDKEILRRIESRIRAGSPGGHTVATPEQETKPVSKKSA" FT misc_feature 325087..325284 FT /gene="cI" FT /locus_tag="ROD_02941" FT /note="HMMPfam hit to PF07022, Bacteriophage CI repressor, FT score 0.002" FT /inference="protein motif:PFAM:PF07022" FT misc_feature 325123..325188 FT /note="Predicted helix-turn-helix motif with score 999.000, FT SD 2.59 at aa 29-50, sequence RSVRTAASDWGIPPSTLNNYIH" FT CDS 325998..327251 FT /pseudo FT /transl_table=11 FT /gene="lfiI" FT /locus_tag="ROD_02951" FT /product="lateral flagellar export/assembly protein FT (fragment)" FT /note="pseudogene, N-terminus missing, truncated by FT prophage CRP28 insertion" FT misc_feature 326349..326984 FT /gene="lfiI" FT /locus_tag="ROD_02951" FT /note="HMMPfam hit to PF00006, ATPase, F1/V1/A1 complex, FT alpha/beta subunit, nucleotide-binding, score 2.6e-117" FT /inference="protein motif:PFAM:PF00006" FT CDS 327257..327700 FT /transl_table=11 FT /gene="lfiJ" FT /locus_tag="ROD_02961" FT /product="lateral flagellar export/assembly protein" FT /db_xref="GOA:D2TJ74" FT /db_xref="InterPro:IPR012823" FT /db_xref="UniProtKB/TrEMBL:D2TJ74" FT /protein_id="CBG87080.1" FT /translation="MRQIIDTLAQLQRLRDKAVKDMTAQLAKQQQLCAGYENNIKALGY FT LIQKTSAGAGAPCVESLKNVTDYKGTLRKVIAWQEQEKTLAKIKEGRIQKNLVAAACQE FT KVVAMTLDEKRNELRDEAFAKEQKAVDEIAGQCWLRNKQLGQR" FT CDS 327697..328095 FT /transl_table=11 FT /gene="tagD" FT /locus_tag="ROD_02971" FT /product="glycerol-3-phosphate cytidylyltransferase" FT /db_xref="GOA:D2TJ75" FT /db_xref="InterPro:IPR004820" FT /db_xref="InterPro:IPR004821" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:D2TJ75" FT /protein_id="CBG87081.1" FT /translation="MKTVITFGTFDVFHVGHLKILQRASALGERLVVGVSSDALNIRKK FT GRAPVYSQSDRMDILAGIKGVDEVFLEESLEQKADYIRRFQADILVMGDDWRGKFDNLS FT WLCKVVYFPRTPSVSTTSIIEVIRIQQD" FT misc_feature 327709..328074 FT /gene="tagD" FT /locus_tag="ROD_02971" FT /note="HMMPfam hit to PF01467, Cytidylyltransferase, score FT 8.7e-21" FT /inference="protein motif:PFAM:PF01467" FT CDS complement(328076..328849) FT /transl_table=11 FT /locus_tag="ROD_02981" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR008441" FT /db_xref="UniProtKB/TrEMBL:D2TJ76" FT /protein_id="CBG87082.1" FT /translation="MHIYTYWVNQPGSSMPDYLKLCMQTWIKAIPGVKIVIINHDNIRQ FT YLPGTLLSEAFFNLPLAMQSDVVSVWVLLSRGGMFIDVDTIMTANPFATGAFNEATLYA FT FGYQQRQQIHLAILFCQRRQNPLLYQWITEIGKRLAQPLPSPLPWDWVGNSIINPLLRK FT DEMKPHYEILEAQAFGNILELSVADENPWNRYIKFWFTPPAQPLNELLARVKGGMISLH FT NSWTPEIYRTATLQDIIKSKDSLMLSHLLVNLAGF" FT CDS complement(join(328900..330585,330589..331428)) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_03001" FT /product="putative glysosyltransferase (pseudogene)" FT /note="pseudogene, truncated by premature stop codon" FT misc_feature complement(330889..331374) FT /locus_tag="ROD_03001" FT /note="HMMPfam hit to PF00535, Glycosyl transferase, family FT 2, score 1.5e-17" FT /inference="protein motif:PFAM:PF00535" FT CDS complement(331504..332448) FT /transl_table=11 FT /gene="lafV" FT /locus_tag="ROD_03011" FT /product="lateral flagellar associated protein" FT /db_xref="GOA:D2TJ77" FT /db_xref="UniProtKB/TrEMBL:D2TJ77" FT /protein_id="CBG87084.1" FT /translation="MKMIECYEPDFVRTFLSRHPGSPLHTRQVWQDEIRHSLTLTDAAS FT CEAAFGNPHAFALHTSQCEAMPDGQPLSLREQTLNQAALNAVTLPALQPELRLYALGIL FT LSYSEKLPGNSEETLAQIASLPTSLANLARSGKLQQQFALLPSVPQLQCRLITLLGGQE FT FDWQTLPDGARKISLPLQVSLLALQDANSEALLQQQLQAQWQETHERYFAHEAWIFSNY FT LIYRLYHDMFPQHDGEGVAGRYFALACDFFLIRTLFSLWTLDGSSLSHADIFALFALFE FT RWRHSESAAFLRRQAESRLPTDHLLSAFSLLIC" FT CDS complement(332585..333013) FT /transl_table=11 FT /gene="lfgN" FT /locus_tag="ROD_03021" FT /product="lateral flagellar chaperone protein" FT /db_xref="GOA:D2TJ78" FT /db_xref="InterPro:IPR007809" FT /db_xref="UniProtKB/TrEMBL:D2TJ78" FT /protein_id="CBG87085.1" FT /translation="MSTRLQQVKMLLQGIREDDTLYDGLRNLLEQQRLCMIRRASEELL FT AVNETIHSHYELLKENSRQRRTLLQLLGVSASRAGMEEVFSWLPAPQKSAARSGWQRLE FT HKAERCKAYNEKNGDLLIRQYVFIQSFLGTEADFIYQP" FT CDS complement(333029..333316) FT /transl_table=11 FT /gene="lfgM" FT /locus_tag="ROD_03031" FT /product="lateral flagellar anti-sigma factor 28 protein" FT /db_xref="GOA:D2TJ79" FT /db_xref="InterPro:IPR007412" FT /db_xref="UniProtKB/TrEMBL:D2TJ79" FT /protein_id="CBG87086.1" FT /translation="MKITPTLSGNRPTPAAADAGNSSKNSAARGAVSATSLSADDITQA FT GLQSAQQALNDDGQGDIDYDKVAQMQAALAAGELSVDTDQLAGDMLNFFR" FT misc_feature complement(333032..333316) FT /gene="lfgM" FT /locus_tag="ROD_03031" FT /note="HMMPfam hit to PF04316, Anti-sigma-28 factor, FlgM, FT score 9.5e-08" FT /inference="protein motif:PFAM:PF04316" FT CDS complement(333412..334182) FT /transl_table=11 FT /gene="lfgA" FT /locus_tag="ROD_03041" FT /product="lateral flagellar P-ring addition protein" FT /db_xref="GOA:D2TJ80" FT /db_xref="InterPro:IPR013974" FT /db_xref="InterPro:IPR017585" FT /db_xref="UniProtKB/TrEMBL:D2TJ80" FT /protein_id="CBG87087.1" FT /translation="MTIQSRRRKTIFRLMTETLLALMLVSPLHAAIRPVQHSAREQINA FT LVLSASGQEIDALARRQQWHDYRYTFNVFIPSAIATAALCPGTPHVTPTSAAEMALSRM FT NFTVSCPGKGGWKVNVAVRPDVYVPVVMPKSLIARDTVITADDVLLKRYNVSGQRSGLL FT MDLNEAIGMTSKRPLQPGKPLNRAQLVAPVLVKRDQPVMIVSRLGGITAAMPGVALKNG FT RKGEVIKIRNAASQRIISGVVDDAGVVSPLNTSG" FT misc_feature complement(333613..333801) FT /gene="lfgA" FT /locus_tag="ROD_03041" FT /note="HMMPfam hit to PF08666, SAF domain, score 1.5e-06" FT /inference="protein motif:PFAM:PF08666" FT misc_feature complement(333910..333978) FT /gene="lfgA" FT /locus_tag="ROD_03041" FT /note="1 probable transmembrane helix predicted for FT ROD03041 by TMHMM2.0 at aa 69-91" FT sig_peptide complement(334093..334182) FT /gene="lfgA" FT /locus_tag="ROD_03041" FT /note="Signal peptide predicted for ROD03041 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.999 between residues 30 and 31" FT CDS 334265..334612 FT /transl_table=11 FT /gene="lfgB" FT /locus_tag="ROD_03051" FT /product="lateral flagellar rod protein" FT /db_xref="GOA:D2TJ81" FT /db_xref="InterPro:IPR006300" FT /db_xref="InterPro:IPR019776" FT /db_xref="UniProtKB/TrEMBL:D2TJ81" FT /protein_id="CBG87088.1" FT /translation="MGISFQQALGVHPQAVKLRLERTELLTANLANVDTPNFKAKDIDF FT AAEMQRASRTNVMPEVDVKYRVPMQPSEDGNTVELNTEQARFSQNSMDYQSSLTFLNLQ FT ISGIKEAIEGK" FT misc_feature 334307..334369 FT /note="PS00588 Flagella basal body rod proteins signature." FT /inference="protein motif:Prosite:PS00588" FT CDS 334615..335046 FT /transl_table=11 FT /gene="lfgC" FT /locus_tag="ROD_03061" FT /product="lateral flagellar basal-body rod protein" FT /db_xref="GOA:D2TJ82" FT /db_xref="InterPro:IPR001444" FT /db_xref="InterPro:IPR006299" FT /db_xref="InterPro:IPR010930" FT /db_xref="UniProtKB/TrEMBL:D2TJ82" FT /protein_id="CBG87089.1" FT /translation="MSFTDIYQISGSAMTAQTIRLNTVASNLANAEAPASSEAQAYKAR FT SPVFAAVYNNSLTGAHHRHAIDGASVQVQDVLQSGGAVKRYEPHHPMADNNGYVWYPDV FT NVVEQMADMMSASRDFETNVDVLNNVKSMQQSLLKLGEA" FT misc_feature 334918..335034 FT /gene="lfgC" FT /locus_tag="ROD_03061" FT /note="HMMPfam hit to PF06429, Protein of unknown function FT DUF1078, C-terminal, score 0.00019" FT /inference="protein motif:PFAM:PF06429" FT CDS 335046..335858 FT /transl_table=11 FT /gene="lfgD" FT /locus_tag="ROD_03071" FT /product="lateral flagellar rod protein" FT /db_xref="GOA:D2TJ83" FT /db_xref="InterPro:IPR005648" FT /db_xref="UniProtKB/TrEMBL:D2TJ83" FT /protein_id="CBG87090.1" FT /translation="MNALALYTRSQALSAAQEPTAVADNHVDAATSDASSASSTTVTSD FT NSSTTGTATTTTSTESSGVETFLTLFVAEIQNQDPTDPADPTDYIDQLSSMAQVAMMEE FT MSVQANTNAVLMSNIQVMALGNLVGDDIMVQTTTLQVSDSAIEGRVTLDDACTTVDLHF FT IDAAGDDYTVSLLPEGGTSVGPGQVDFDINPADYGIPPGDYDLSVVTNTGEEEVPVEVS FT GEVKDVRIPLDGSTPVLNIDGVGEVPFTMISQFGVPDADNGSDSSDAI" FT misc_feature 335160..335606 FT /gene="lfgD" FT /locus_tag="ROD_03071" FT /note="HMMPfam hit to PF03963, Flagellar hook capping FT protein, score 2e-11" FT /inference="protein motif:PFAM:PF03963" FT CDS 335884..337086 FT /transl_table=11 FT /gene="lfgE" FT /locus_tag="ROD_03081" FT /product="lateral flagellar hook protein" FT /db_xref="GOA:D2TJ84" FT /db_xref="InterPro:IPR001444" FT /db_xref="InterPro:IPR010930" FT /db_xref="InterPro:IPR011491" FT /db_xref="InterPro:IPR020013" FT /db_xref="UniProtKB/TrEMBL:D2TJ84" FT /protein_id="CBG87091.1" FT /translation="MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTDFSAMYAD FT SQAMGVSVAGTAQSIARGGSMVSTGNALDLAINNGGFFVMCDSAGNITYTRAGSFETDK FT NGYIVNASGACLQGYPVDGSGTLQTGTVTDLQIQTGNIPAQATSNMTFTANFDASDETV FT DRSTMPFDLSNSDSYTDSYTTTVYDSLGNEHSVCQYFTKTDDNSWEVQYSFDGQMESGV FT EPVTLTFDPNTGKLTSPTSPVSVEFETGAAAPIDMTFDYSSCTQYGSDFSVTTNSANGY FT ASATQNGVQVDDDGKVYATYSNGERMLQGQIVLATFPNENGLEAVSGTAWVQTGESGSA FT LIGVPGSGSCGTLSSGMLESSNVDITTELVELMTAQRNYQANTKVISTSTQLDDALFQA FT M" FT misc_feature 335890..335982 FT /gene="lfgE" FT /locus_tag="ROD_03081" FT /note="HMMPfam hit to PF00460, Flagellar basal body rod FT protein, score 1.4e-06" FT /inference="protein motif:PFAM:PF00460" FT misc_feature 336196..336228 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 336391..336726 FT /gene="lfgE" FT /locus_tag="ROD_03081" FT /note="HMMPfam hit to PF07559, Flagellar basal body FlaE, FT score 1.2e-24" FT /inference="protein motif:PFAM:PF07559" FT misc_feature 336901..336933 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 336964..337080 FT /gene="lfgE" FT /locus_tag="ROD_03081" FT /note="HMMPfam hit to PF06429, Protein of unknown function FT DUF1078, C-terminal, score 1.7e-15" FT /inference="protein motif:PFAM:PF06429" FT CDS join(337098..337622,337626..337832) FT /pseudo FT /transl_table=11 FT /gene="lfgF" FT /locus_tag="ROD_03091" FT /product="lateral flagellar rod protein (pseudogene)" FT /note="pseudogene, truncated by premature stop codon" FT misc_feature 337110..337202 FT /gene="lfgF" FT /locus_tag="ROD_03091" FT /note="HMMPfam hit to PF00460, Flagellar basal body rod FT protein, score 1.9e-07" FT /inference="protein motif:PFAM:PF00460" FT CDS 337866..338651 FT /transl_table=11 FT /gene="lfgG" FT /locus_tag="ROD_03111" FT /product="lateral flagellar rod protein" FT /db_xref="GOA:D2TJ85" FT /db_xref="InterPro:IPR001444" FT /db_xref="InterPro:IPR010930" FT /db_xref="InterPro:IPR012834" FT /db_xref="InterPro:IPR019776" FT /db_xref="InterPro:IPR020013" FT /db_xref="UniProtKB/TrEMBL:D2TJ85" FT /protein_id="CBG87093.1" FT /translation="MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLF FT YQTQEAPGAMLDQNNIMPTGMQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQ FT VQKANGDIAYTRDGNLQINADGVLTNSQGLPLQPEIDVPAGATSVAFGEDGTVTAILPG FT DSDPTELGQLTLVNFANPAGLSAEGDNLYLETAASGQPTEGIPGEDGLGTLQGNALEGS FT NVDIVNEMVAMITVQRAYEMNAKMVSAADDMLQFISQTL" FT misc_feature 337878..337970 FT /gene="lfgG" FT /locus_tag="ROD_03111" FT /note="HMMPfam hit to PF00460, Flagellar basal body rod FT protein, score 4.2e-13" FT /inference="protein motif:PFAM:PF00460" FT misc_feature 337896..337958 FT /note="PS00588 Flagella basal body rod proteins signature." FT /inference="protein motif:Prosite:PS00588" FT misc_feature 338529..338645 FT /gene="lfgG" FT /locus_tag="ROD_03111" FT /note="HMMPfam hit to PF06429, Protein of unknown function FT DUF1078, C-terminal, score 7.8e-17" FT /inference="protein motif:PFAM:PF06429" FT CDS 338708..339373 FT /transl_table=11 FT /gene="lfgH" FT /locus_tag="ROD_03121" FT /product="lateral flagellar L-ring protein" FT /db_xref="GOA:D2TJ86" FT /db_xref="InterPro:IPR000527" FT /db_xref="UniProtKB/TrEMBL:D2TJ86" FT /protein_id="CBG87094.1" FT /translation="MKNYLWLIALLPLLSGCESQTLLVKKNDEFFAPPKAEAPPPAAGR FT AGGVFETGYNWSLTADRRAYRVGDILTVLLEESTQSSKQAKTNFGKNNTVDIGAPTFFG FT HTKKNLSGSIDANRDFDGSATSQQQNSLRGEITVSVHSVQPNGILEIRGEKWLTLNQGD FT EYIRLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLFNHPLFPI" FT sig_peptide 338708..338764 FT /gene="lfgH" FT /locus_tag="ROD_03121" FT /note="Signal peptide predicted for ROD03121 by SignalP 2.0 FT HMM (Signal peptide probability 0.640) with cleavage site FT probability 0.484 between residues 19 and 20" FT misc_feature 338726..338758 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 338762..339367 FT /gene="lfgH" FT /locus_tag="ROD_03121" FT /note="HMMPfam hit to PF02107, Flagellar L-ring protein, FT score 1.2e-40" FT /inference="protein motif:PFAM:PF02107" FT CDS 339373..340509 FT /transl_table=11 FT /gene="lfgI" FT /locus_tag="ROD_03131" FT /product="lateral flagellar P-ring protein" FT /db_xref="GOA:D2TJ87" FT /db_xref="InterPro:IPR001782" FT /db_xref="UniProtKB/TrEMBL:D2TJ87" FT /protein_id="CBG87095.1" FT /translation="MQESEMQHTSGRWMQALYGVAIALTLALPGMAQAQSLESLVNVQG FT VRENQLVGYSLVVGLDGTGDKNQVKFTNQTITNMLRQFGVQLPNKIDPKVKNVAAVAVS FT AVLPPMYSRGQTIDVTVSSIGDAKSLRGGTLLLTQLHGADGEVYALAQGSVVVGGMNAT FT GASGSSVTVNTPTAGLIPNGATVEREIPSDFQMGDTITLNLKRPSFKDANNIAGAINAV FT FGGIATAQSSTNVVVRAPTSPGARVAFMSQLDDVQVQAEKVRARVVFNSRTGTVVMGDG FT IALHAAAVSHGSLTVSINETSNVSQPNALAGGRTAVTPQSNIAVNHARPGMISLPESSS FT LKTLVNALNSLGATPDDIMSILQALHEAGALDADLEVI" FT sig_peptide 339373..339474 FT /gene="lfgI" FT /locus_tag="ROD_03131" FT /note="Signal peptide predicted for ROD03131 by SignalP 2.0 FT HMM (Signal peptide probability 0.972) with cleavage site FT probability 0.958 between residues 34 and 35" FT misc_feature 339409..339468 FT /gene="lfgI" FT /locus_tag="ROD_03131" FT /note="1 probable transmembrane helix predicted for FT ROD03131 by TMHMM2.0 at aa 13-32" FT misc_feature 339490..340506 FT /gene="lfgI" FT /locus_tag="ROD_03131" FT /note="HMMPfam hit to PF02119, Flagellar P-ring protein, FT score 8.4e-163" FT /inference="protein motif:PFAM:PF02119" FT CDS 340509..340823 FT /transl_table=11 FT /gene="lfgJ" FT /locus_tag="ROD_03141" FT /product="lateral flagellar peptidoglycan hydrolase" FT /db_xref="GOA:D2TJ88" FT /db_xref="InterPro:IPR019301" FT /db_xref="UniProtKB/TrEMBL:D2TJ88" FT /protein_id="CBG87096.1" FT /translation="MSQFKVDHGGGVSGHDALMGPQIRNHDMQKAAEQFEAIFLRNMLK FT EMRKTNEIFDSKDNPFNSDSVRMMQGFYDDQLCNTLAQQHGIGIAAMIVKQLSGHHSKG FT " FT CDS 340923..342290 FT /transl_table=11 FT /gene="lfgK" FT /locus_tag="ROD_03151" FT /product="lateral flagellar hook associated protein 1" FT /db_xref="GOA:D2TJ89" FT /db_xref="InterPro:IPR002371" FT /db_xref="InterPro:IPR010930" FT /db_xref="UniProtKB/TrEMBL:D2TJ89" FT /protein_id="CBG87097.1" FT /translation="MDMINIGYSGASTAQVELNVTAQNTANAMTDGYTRQVAVVSSIGA FT SAGSPNSAGNGVQVDSIRRVSNQYQVNQVWYAASDYGYYSTRQEYLTQLETVLSDENSS FT LSGGFDNFFAALNEATTSPDDAALREQVLSESGALALRIDNTLAYIDSQSDEIVSQEQA FT MVTQINTLTSGIANYNKQIAQAEANGDNASALYDARDQMVEQLSGIMDVQVNIDDKGNY FT NVTLTNGQPLVSGQQSSTIALETSADGSRSMSLTFAGTTASMTTDTGGSLGALFDYQNQ FT VLTPLSDTINSMAAQFADAVNSQLAQGYDLNGNPGEPLFIYDAASSDGPLVVNPDITAD FT KLAFSSSPDESGNSDNLQALIAISTRPLEIANLGEVSVGEACSAIISNIGIFSQQNQTE FT AQAAANVYSEAQNQQSSVSMDEEAVNLITYQQIYEANLKVISAGAEIFDSVLEMCN" FT misc_feature 340932..341024 FT /gene="lfgK" FT /locus_tag="ROD_03151" FT /note="HMMPfam hit to PF00460, Flagellar basal body rod FT protein, score 0.00016" FT /inference="protein motif:PFAM:PF00460" FT misc_feature 342165..342281 FT /gene="lfgK" FT /locus_tag="ROD_03151" FT /note="HMMPfam hit to PF06429, Protein of unknown function FT DUF1078, C-terminal, score 2.1e-13" FT /inference="protein motif:PFAM:PF06429" FT CDS 342305..343234 FT /transl_table=11 FT /gene="lfgL" FT /locus_tag="ROD_03161" FT /product="lateral flagellar hook associated protein 3" FT /db_xref="GOA:D2TJ90" FT /db_xref="InterPro:IPR001029" FT /db_xref="InterPro:IPR013384" FT /db_xref="UniProtKB/TrEMBL:D2TJ90" FT /protein_id="CBG87098.1" FT /translation="MRVTAQQSYVSMTRNFNDLSGDLAHVVTQMATGKSILLPSDDPIA FT STRITQLNRQQSAIEQYQNNIDSASAGMSQQESILDGVNNALLSVRDDLLEAANGTNTA FT DSLASLGQDIASLTESMVAALNYQDEDGHYVFGGTVNDKPPILAVDDDGDGVTDSYSYQ FT GNGDHRQTTVSNGVEVDTNVAVSDFFGSSLDVLNTLNALSQELQDPSLDPADPQIQSDI FT ASAIDVVDQAADSLNASVASLGETQNTMTMLSGAQTDIATSNDQLIGSLSDLDYGPASI FT TFTGLEMAMEATLKTYSKVSELNLFSVL" FT misc_feature 342383..342796 FT /gene="lfgL" FT /locus_tag="ROD_03161" FT /note="HMMPfam hit to PF00669, Flagellin, N-terminal, score FT 2.5e-05" FT /inference="protein motif:PFAM:PF00669" FT CDS 343303..344304 FT /transl_table=11 FT /gene="lafW" FT /locus_tag="ROD_03171" FT /product="lateral flagellar putative hook associated FT protein" FT /db_xref="GOA:D2TJ91" FT /db_xref="UniProtKB/TrEMBL:D2TJ91" FT /protein_id="CBG87099.1" FT /translation="MQVGLNTSSLSAGGALSSPVGQHAVAQNTPVRQKPSVVASDYPAS FT PLIATRPQRYSVQLNDQITTLQQADHYLGQLEQQLLDYRHTTRRGGQGPQQKGTEIARL FT LEQRVTLAGGAVDRQLKPVLQGEARVVFHAPELVQMVQERAPGGKMFRISDGRQTQLAA FT VAVGEENDGGQYRVMMNNALRRVGIQLHERHGSVAFSTAEAKWPQIAQTLSVHQEGETP FT SSFTPLNAFAEPSLADDLLQSVRQGGSRSGDAVQQALDTIGEQRAQMAVQQEKARQLID FT KMARFPQAESAVQASTTLGGVLDNASHNYQILAQAVNGQARLSSQTVRNLLR" FT sig_peptide 343303..343380 FT /gene="lafW" FT /locus_tag="ROD_03171" FT /note="Signal peptide predicted for ROD03171 by SignalP 2.0 FT HMM (Signal peptide probability 0.977) with cleavage site FT probability 0.542 between residues 26 and 27" FT CDS complement(344301..344774) FT /transl_table=11 FT /locus_tag="ROD_03181" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ92" FT /protein_id="CBG87100.1" FT /translation="MKCLNAIKPLFPVLLLSALPVSFCAMANIENTVIANYDLATGKSS FT HYDLLISQNGAESTVTVLPFGMSDNSPSIFKVSTCINRFAGTTKQGEFRFSAAETNKND FT VRLSNIGYFVNEHNLRTWWIRLNDKQNLMFNEDVGGMMIANAGLFNNQLCPLD" FT misc_feature complement(344304..344315) FT /note="PS00294 Prenyl group binding site (CAAX box)." FT /inference="protein motif:Prosite:PS00294" FT sig_peptide complement(344694..344774) FT /locus_tag="ROD_03181" FT /note="Signal peptide predicted for ROD03181 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 27 and 28" FT CDS complement(344752..345729) FT /transl_table=11 FT /gene="lafZ" FT /locus_tag="ROD_03191" FT /product="lateral flagellar transmembrane regulator" FT /db_xref="GOA:D2TJ93" FT /db_xref="InterPro:IPR001867" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR016032" FT /db_xref="UniProtKB/TrEMBL:D2TJ93" FT /protein_id="CBG87101.1" FT /translation="MNIAQVDKTMSIVVNNWRMDSSLNALIHCETGETRRLGEYHFILL FT ETLAKNADSVLSRSYLMAEVWKNRIVGGNSLPTAIHALRVAIDDDGKQQEIIKTIPKKG FT YLFNKDYLTIEYSSEAAEHVVLSENKNKENLTTTDFTAAEATAPWPLTADEAADQQLPS FT TAVVPPPAEPSRRRNTLFIGAGIAVIALFLLSLIYYFQAPTTPVSPDSPRLVKETFDHA FT DNMEIYHLYTSTTNKKSTSLLAQHISPAIARINELLKARNAKLTLYYKFALNKFTLDMV FT LDNQCDSKWQLALNFENWQNKDNETNTVMYQEVEKMLNEMPECN" FT misc_feature complement(345124..345192) FT /gene="lafZ" FT /locus_tag="ROD_03191" FT /note="1 probable transmembrane helix predicted for FT ROD03191 by TMHMM2.0 at aa 180-202" FT misc_feature complement(345409..345636) FT /gene="lafZ" FT /locus_tag="ROD_03191" FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C-terminal, score 8.4e-12" FT /inference="protein motif:PFAM:PF00486" FT CDS 346129..346272 FT /transl_table=11 FT /locus_tag="ROD_03201" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TJ94" FT /protein_id="CBG87102.1" FT /translation="MGNMKSRPFVALARFSLAIRAVANGENFFCADFKFSAGEVVFTGY FT RS" FT sig_peptide 346129..346197 FT /locus_tag="ROD_03201" FT /note="Signal peptide predicted for ROD03201 by SignalP 2.0 FT HMM (Signal peptide probability 0.855) with cleavage site FT probability 0.565 between residues 23 and 24" FT CDS 346300..347205 FT /transl_table=11 FT /gene="lafA" FT /locus_tag="ROD_03211" FT /product="lateral flagellar flagellin" FT /db_xref="GOA:D2TJ95" FT /db_xref="InterPro:IPR001029" FT /db_xref="InterPro:IPR001492" FT /db_xref="UniProtKB/TrEMBL:D2TJ95" FT /protein_id="CBG87103.1" FT /translation="MLSINTNNASMAAVNAINKSNSSLSTSMERLATGNRINSSADDAA FT GKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDEMSDVLGRMKDLATQAANGTYN FT DDDLQAMQDEFDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGEAGLFQSAVTFQVGAES FT SDTMTVDISSQLGTLVDDLSAVSASFVADQAGGTTISGGTELTASGSANSMISTISTAM FT DDVSKIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQT FT GITMLKQSNSMSSMVSSLLQ" FT misc_feature 346381..346824 FT /gene="lafA" FT /locus_tag="ROD_03211" FT /note="HMMPfam hit to PF00669, Flagellin, N-terminal, score FT 1.5e-42" FT /inference="protein motif:PFAM:PF00669" FT misc_feature 346921..347136 FT /gene="lafA" FT /locus_tag="ROD_03211" FT /note="HMMPfam hit to PF00700, Flagellin, C-terminal, score FT 5.6e-23" FT /inference="protein motif:PFAM:PF00700" FT CDS 347410..348729 FT /transl_table=11 FT /gene="lafB" FT /locus_tag="ROD_03221" FT /product="lateral flagellar hook associated protein 2" FT /db_xref="GOA:D2TJ96" FT /db_xref="InterPro:IPR003481" FT /db_xref="InterPro:IPR010809" FT /db_xref="UniProtKB/TrEMBL:D2TJ96" FT /protein_id="CBG87104.1" FT /translation="MINPRTIAQEIAYADVATQAANLQKQQSELDAESNGLDTLSSALN FT DFQTAIDALNSDTDGPVTFSATANNDSATITANSQAQAGTYSFYVEQLAQAQQSTFDLS FT DDTFSATGTFELTMGDSTMDIDLAAADQNGDGDGYIDASELVSAINHSDDNPGVSAALV FT KTDGATTIMLTSETTGAQSAFSVSISGHDASGDTSATAPTLTEMTAAQDAIIHLGSATG FT PAITNSTNTFNDVIPGVSMTFSEVTGENDDLTTFTVAEDSSGTQAKVQTFVDAYNTLVD FT TVDSLTSSGSDSTSAGIFAGDSGLKSLTSQLDDLAHASYGGVSIVDYGITLDAHGHLQI FT DSDAFNEAMEENPEGLTAIFVGDDSMVAQMDELMESYLDSSNGILTLRQQNIDDQQDKI FT QSEADRLTETYNNNYERYVEEYTNTLIEVYTMQTSMAAFM" FT misc_feature 347413..347703 FT /gene="lafB" FT /locus_tag="ROD_03221" FT /note="HMMPfam hit to PF02465, Flagellar hook-associated FT protein 2, N-terminal, score 5.7e-09" FT /inference="protein motif:PFAM:PF02465" FT misc_feature 348037..348681 FT /gene="lafB" FT /locus_tag="ROD_03221" FT /note="HMMPfam hit to PF07195, Flagellar hook-associated 2, FT C-terminal, score 8.8e-54" FT /inference="protein motif:PFAM:PF07195" FT CDS 348763..349155 FT /transl_table=11 FT /gene="lafC" FT /locus_tag="ROD_03231" FT /product="lateral flagellar chaperone protein" FT /db_xref="GOA:D2TJ97" FT /db_xref="InterPro:IPR003713" FT /db_xref="UniProtKB/TrEMBL:D2TJ97" FT /protein_id="CBG87105.1" FT /translation="MYDTQDGYSQYKEIDLAARTAAASPLELVLVLFSGLMDELERAKS FT HIENKRFEKKAQSINKCIDILNALTSSLEFETGGELVVNLSRLYDHCVFRLYEASGELS FT LEKIDEVILILSNLREGWDGLSEKLG" FT misc_feature 348772..349149 FT /gene="lafC" FT /locus_tag="ROD_03231" FT /note="HMMPfam hit to PF02561, Flagellar protein FliS, FT score 1.1e-20" FT /inference="protein motif:PFAM:PF02561" FT CDS 349160..349477 FT /transl_table=11 FT /gene="lafD" FT /locus_tag="ROD_03241" FT /product="lateral flagellar chaperone protein" FT /db_xref="GOA:D2TJ98" FT /db_xref="UniProtKB/TrEMBL:D2TJ98" FT /protein_id="CBG87106.1" FT /translation="MDRESQQRQLFALIDAMNEALDKQRWRRLPALRQQLMRQFAQYQA FT QESSETELRAVKERLRAAFADLIERRSERAALLKARMDKHQQLQEGVLAYSMMTLISEK FT A" FT CDS 349474..350625 FT /transl_table=11 FT /gene="lafE" FT /locus_tag="ROD_03251" FT /product="lateral flagellar hook length control protein" FT /db_xref="GOA:D2TJ99" FT /db_xref="InterPro:IPR021136" FT /db_xref="UniProtKB/TrEMBL:D2TJ99" FT /protein_id="CBG87107.1" FT /translation="MNPVLLAASGALADTVPEKGATPAPNGAQRAGTFSLSPTATGEAA FT ERLRGAKINQQRAHNGEREQVNDPAAMQVLMALLLTPPTQPAEQMPLPGGEIVKMLAAG FT QTQAGVATAGLRQLADALTQKGSDGQQNPRDLASLLPTLQEVLATLSQQTPQAGATPEQ FT QAALATFSAQNLRAIAPGQPSTSQQFAARAKQTDGSVAPRPLAMKKNDDVTLHAPAAQN FT LLNVAVQNPQPLNATVSHSITVAHVSLPTAISGDELGEKLTALLKDRIQFQIGQQQQIS FT TIRLDPPSLGKLEIAVQLDAGKLMVHIGASQSDVCRSLQQFSNDLRQHLTAQNFMEVNV FT QVSSEGQSQQQQQPGHQQEEVLSALSLSDEPQFQQNESVLIKV" FT misc_feature 350239..350505 FT /gene="lafE" FT /locus_tag="ROD_03251" FT /note="HMMPfam hit to PF02120, Flagellar hook-length FT control protein, score 8.3e-13" FT /inference="protein motif:PFAM:PF02120" FT CDS 350633..351097 FT /transl_table=11 FT /gene="lafF" FT /locus_tag="ROD_03261" FT /product="lateral flagellar associated protein" FT /db_xref="GOA:D2TJA0" FT /db_xref="InterPro:IPR005503" FT /db_xref="UniProtKB/TrEMBL:D2TJA0" FT /protein_id="CBG87108.1" FT /translation="MKRIVMASVISSIMALVVGGGAGWGVYHFAGNGKTATAAHAEAVE FT KMDESKSIFVSLQETIVTLHDNDGADHYMSAELVMVVASEKESEQIKQQEPLYQSIAVE FT RLSEMKYEEIRALKISEIRKLIAEALQKELKDRKIAAPYKDILVKKVVFQ" FT sig_peptide 350633..350692 FT /gene="lafF" FT /locus_tag="ROD_03261" FT /note="Signal peptide predicted for ROD03261 by SignalP 2.0 FT HMM (Signal peptide probability 0.979) with cleavage site FT probability 0.449 between residues 20 and 21" FT misc_feature 350645..350713 FT /gene="lafF" FT /locus_tag="ROD_03261" FT /note="1 probable transmembrane helix predicted for FT ROD03261 by TMHMM2.0 at aa 5-27" FT misc_feature 350648..351094 FT /gene="lafF" FT /locus_tag="ROD_03261" FT /note="HMMPfam hit to PF03748, Flagellar basal FT body-associated protein FliL, score 2.6e-05" FT /inference="protein motif:PFAM:PF03748" FT CDS 351118..351834 FT /transl_table=11 FT /gene="lafS" FT /locus_tag="ROD_03271" FT /product="lateral flagellar sigma factor 28 protein" FT /db_xref="GOA:D2TJY1" FT /db_xref="InterPro:IPR000943" FT /db_xref="InterPro:IPR007627" FT /db_xref="InterPro:IPR007630" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR012845" FT /db_xref="InterPro:IPR013324" FT /db_xref="InterPro:IPR013325" FT /db_xref="InterPro:IPR014284" FT /db_xref="UniProtKB/TrEMBL:D2TJY1" FT /protein_id="CBG87109.1" FT /translation="MLQDAYESEEFSATPVLTPQQESHYLQAYLPLVRKVVRQLAPQCT FT CVIDRQDMEQTALLGLLNAIRRYGMPDEGFAGYAIHRIRGAILDELRSLDWRPRLLRQK FT YHQIKDLIRDMRKQLGREPEWQELSQTGLTPEDYLEFQQLEGAETLASLDELLSGEGHG FT ALPEGRGLEEQFVNQEMLSYALGQLSEKEGLVLSMYYQHDMNLKEIALVLGLTEARICQ FT MNKKITQKIRDCLYPD" FT misc_feature 351190..351408 FT /gene="lafS" FT /locus_tag="ROD_03271" FT /note="HMMPfam hit to PF04542, RNA polymerase sigma-70 FT region 2, score 1.1e-12" FT /inference="protein motif:PFAM:PF04542" FT misc_feature 351667..351816 FT /gene="lafS" FT /locus_tag="ROD_03271" FT /note="HMMPfam hit to PF04545, RNA polymerase sigma-70 FT region 4, score 2e-12" FT /inference="protein motif:PFAM:PF04545" FT misc_feature 351727..351792 FT /note="Predicted helix-turn-helix motif with score FT 1465.000, SD 4.18 at aa 204-225, sequence FT MNLKEIALVLGLTEARICQMNK" FT CDS 351863..352726 FT /transl_table=11 FT /gene="lafT" FT /locus_tag="ROD_03281" FT /product="lateral flagellar motor protein A" FT /db_xref="GOA:D2TJY2" FT /db_xref="InterPro:IPR000540" FT /db_xref="InterPro:IPR002898" FT /db_xref="InterPro:IPR022522" FT /db_xref="UniProtKB/TrEMBL:D2TJY2" FT /protein_id="CBG87110.1" FT /translation="MQKVLGLLVVLGCVFGGYFEAGGQLIAIWQPAEIVIILGAGFGAM FT IIGNPKHVLKEIAHQIKGVIGKKQLGPEFQRQLLMCLYELLEMVQNGGLRMLDQHIEQP FT EESTVFQKYPQVLTQKRLVTFIADNFRLMAMGKIDAHELEGILDQELDTVEEELLAPSR FT SLQRTAEAMPGFGICAAVLGIIITMQSIDGSIALIGLKVAAALVGTFLGVFFCYCLMDP FT LANSMEQQARAEHSLLECVRTVLVAQAGGKPTLLAVDAGRKLLHLASKPTFANLDAWVN FT AMLEQE" FT sig_peptide 351863..351922 FT /gene="lafT" FT /locus_tag="ROD_03281" FT /note="Signal peptide predicted for ROD03281 by SignalP 2.0 FT HMM (Signal peptide probability 0.603) with cleavage site FT probability 0.481 between residues 20 and 21" FT misc_feature join(351875..351928,351938..352006,352376..352435, FT 352445..352513) FT /gene="lafT" FT /locus_tag="ROD_03281" FT /note="4 probable transmembrane helices predicted for FT ROD03281 by TMHMM2.0 at aa 5-22, 26-48, 172-191 and FT 195-217" FT misc_feature 352205..352591 FT /gene="lafT" FT /locus_tag="ROD_03281" FT /note="HMMPfam hit to PF01618, MotA/TolQ/ExbB proton FT channel, score 0.001" FT /inference="protein motif:PFAM:PF01618" FT misc_feature 352475..352528 FT /note="PS01307 Flagellar motor protein motA family FT signature." FT /inference="protein motif:Prosite:PS01307" FT CDS 352729..353724 FT /transl_table=11 FT /gene="lafU" FT /locus_tag="ROD_03291" FT /product="lateral flagellar motor protein B" FT /db_xref="GOA:D2TJY3" FT /db_xref="InterPro:IPR006665" FT /db_xref="UniProtKB/TrEMBL:D2TJY3" FT /protein_id="CBG87111.1" FT /translation="MRKAANRRDRGAKTTIIRRQIKKNHGGHHGGAWKVAFADFTLAMM FT ALFMTLWIVNSVSKTERENIVAALHGQSIFNGGGLAPLNKIGKQTIVPGASSKSVTRSR FT PDKASPAKEEVKVSEEVAKKAKDVNEKTALLKKKSATELGELATSIQSIARKAHMETNL FT EMEIVPQGLRVLIKDDKNRNMFERGSARIMPFFQSLLTELAPVFDSLDNKIIITGHTDA FT MAYKSDIYNNWNLSGDRALSARRVLEQAGMPEDKVMQVSAMADQMLLDAKNPESAGNRR FT IEIMVLTKSASDTLYQYFGQHGEKVVQPLVDKLDKQQQVTSLRHRPPTAQ" FT misc_feature 352822..352890 FT /gene="lafU" FT /locus_tag="ROD_03291" FT /note="1 probable transmembrane helix predicted for FT ROD03291 by TMHMM2.0 at aa 32-54" FT misc_feature 353278..353568 FT /gene="lafU" FT /locus_tag="ROD_03291" FT /note="HMMPfam hit to PF00691, Outer membrane protein, FT OmpA/MotB, C-terminal, score 5.3e-21" FT /inference="protein motif:PFAM:PF00691" FT CDS 353776..354417 FT /transl_table=11 FT /locus_tag="ROD_03301" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TJY4" FT /protein_id="CBG87112.1" FT /translation="MIDASEIIPLDIHDGQIADAVCQGAHYDAHSGVWYVEPHELTDAL FT RNFAYDAVDFNIVAPYYLVITSKVQCSSCRQPTDIIAVMFTRYLKKSQDGRRWLSVTGN FT SFLFHINQLPEAIRKNIKAKNYYPDKSKTSGLRYWMNHCEVCGERLSDYALFCVEEDLF FT KRMPVERLLKADIRKVKRMFVCQAGNPADDSRPCPVNFTCEARFRLRGPR" FT CDS 354499..355554 FT /transl_table=11 FT /gene="dbh" FT /locus_tag="ROD_03311" FT /product="DNA polymerase IV" FT /EC_number="2.7.7.7" FT /db_xref="GOA:D2TJY5" FT /db_xref="InterPro:IPR001126" FT /db_xref="InterPro:IPR017961" FT /db_xref="InterPro:IPR017962" FT /db_xref="InterPro:IPR017963" FT /db_xref="InterPro:IPR022880" FT /db_xref="InterPro:IPR024728" FT /db_xref="UniProtKB/TrEMBL:D2TJY5" FT /protein_id="CBG87113.1" FT /translation="MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTAN FT YPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASEHIREIFSRYTSRIEPLSLDE FT AYLDVTDSTHCHGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYV FT ITPEDVSDFLRTLPLAKIPGVGKVSAAKLEEMGLRTCGDVQQCDLALLLKRFGKFGRII FT RERSQGIDERDVNSERLRKSVGVERTMAEDIHHWPECEAIIERLYPELERRLAKVKPDL FT LIARQGVKLKFNDFQQTTQEHVWPQLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD FT PQLERQLLLGL" FT misc_feature 354517..355521 FT /gene="dbh" FT /locus_tag="ROD_03311" FT /note="HMMPfam hit to PF00817, UMUC-like DNA-repair FT protein, score 1.5e-137" FT /inference="protein motif:PFAM:PF00817" FT CDS complement(355648..357105) FT /transl_table=11 FT /gene="pepD" FT /locus_tag="ROD_03321" FT /product="aminoacyl-histidine dipeptidase" FT /EC_number="3.4.13.3" FT /db_xref="GOA:D2TJY6" FT /db_xref="InterPro:IPR001160" FT /db_xref="InterPro:IPR002933" FT /db_xref="InterPro:IPR011650" FT /db_xref="UniProtKB/TrEMBL:D2TJY6" FT /protein_id="CBG87114.1" FT /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGF FT HVERDQVGNILIRKPATAGMEDRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEW FT VKARGTTLGADNGIGMASALAVLTDDSVVHGPLEVLLTMTEEAGMDGAFGLQANWLQAD FT ILINTDSEEEGEIYMGCAGGIDFTSNLKLAREAVPAGFQSFKLTLKGLKGGHSGGEIHV FT GLGNANKLLVRFLAGHAEELDLRLVDFNGGTLRNAIPREAFATVAVAADKVDTLKARVS FT AYQDILKNELAEKEKNLALLLDAAVNDKAALTAQSRDSFIRLLNATPNGVIRNSDVAKG FT VVETSLNVGVVTMTDDNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGGYPGW FT QPDASSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHS FT PDEQVHIESVAHYWTLLTELLKAIPAK" FT misc_feature complement(355663..356892) FT /gene="pepD" FT /locus_tag="ROD_03321" FT /note="HMMPfam hit to PF01546, Peptidase M20, score FT 1.4e-09" FT /inference="protein motif:PFAM:PF01546" FT misc_feature complement(356221..356490) FT /gene="pepD" FT /locus_tag="ROD_03321" FT /note="HMMPfam hit to PF07687, Peptidase M20, dimerisation, FT score 1.2e-15" FT /inference="protein motif:PFAM:PF07687" FT CDS 357370..357828 FT /transl_table=11 FT /gene="gpt" FT /locus_tag="ROD_03331" FT /product="xanthine phosphoribosyltransferase" FT /EC_number="2.4.2.22" FT /db_xref="GOA:D2TJY7" FT /db_xref="InterPro:IPR000836" FT /db_xref="InterPro:IPR023747" FT /db_xref="UniProtKB/TrEMBL:D2TJY7" FT /protein_id="CBG87115.1" FT /translation="MSEKYVVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGAL FT LARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMY FT PKAHFVTIFAKPAGRPLVDDYVIDIPQDTWIEQPWDMGVVFVPPISGR" FT misc_feature 357370..357759 FT /gene="gpt" FT /locus_tag="ROD_03331" FT /note="HMMPfam hit to PF00156, Phosphoribosyltransferase, FT score 3.1e-19" FT /inference="protein motif:PFAM:PF00156" FT misc_feature 357619..357657 FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT /inference="protein motif:Prosite:PS00103" FT CDS 357928..359172 FT /transl_table=11 FT /gene="frsA" FT /locus_tag="ROD_03341" FT /product="esterase" FT /EC_number="3.1.-.-" FT /db_xref="GOA:D2TJY8" FT /db_xref="InterPro:IPR010520" FT /db_xref="UniProtKB/TrEMBL:D2TJY8" FT /protein_id="CBG87116.1" FT /translation="MTQANLSETLFKPRFKHPETSTLVRRFNAGTQPPVQSTLDGKNVP FT HWYRMINRLMWIWRGVDPREILDVQARIVMSQAERTDDDLYDTVVGYRGGNWIYEWSKQ FT AMEWQQKAGQEEDAGRSGRYWLHASTLYNIAAYPHLKGDELAEQAQALANRAYEEAAQR FT LPGALREMTFTVPGGAPVSGFLHMPKGDGPFPTVLMCGGLDALQTDYYTLYERYFAPRG FT IAMLTLDMPSVGFSSKWKLTQDSSLLHQHVLKALPDVPWVDHTRVAAFGFRFGANVAVR FT LAYLESPRLKAVACLGPVVHALLSDAQRQRAVPEMYLDVLASRLGMHDASDEALCVELN FT RYSLKVQGLLGRRCPTPMLSGFWKNDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFD FT KALQEITHWIEKRLC" FT misc_feature 357928..359169 FT /gene="frsA" FT /locus_tag="ROD_03341" FT /note="HMMPfam hit to PF06500, Protein of unknown function FT DUF1100, hydrolase-like, score 4e-303" FT /inference="protein motif:PFAM:PF06500" FT CDS 359230..359631 FT /transl_table=11 FT /gene="crl" FT /locus_tag="ROD_03351" FT /product="sigma factor-binding protein crl (curlin genes FT transcriptional activator)" FT /db_xref="GOA:D2TJY9" FT /db_xref="InterPro:IPR009986" FT /db_xref="UniProtKB/TrEMBL:D2TJY9" FT /protein_id="CBG87117.1" FT /translation="MTLPCGHPRSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVK FT PAPELREFWGWWMELEAQENRFTYSYKFGLFDKAGDWTAVPIKDAEVVERLEHTLREFH FT EKLRELLNSLELSLEPADDFTDEPVKLSA" FT misc_feature 359233..359628 FT /gene="crl" FT /locus_tag="ROD_03351" FT /note="HMMPfam hit to PF07417, Transcriptional regulator FT Crl, score 3.7e-92" FT /inference="protein motif:PFAM:PF07417" FT CDS complement(359682..360734) FT /transl_table=11 FT /gene="phoE" FT /locus_tag="ROD_03361" FT /product="outer membrane pore protein E" FT /db_xref="GOA:D2TJZ0" FT /db_xref="InterPro:IPR001702" FT /db_xref="InterPro:IPR001897" FT /db_xref="InterPro:IPR013793" FT /db_xref="InterPro:IPR017690" FT /db_xref="InterPro:IPR023614" FT /db_xref="UniProtKB/TrEMBL:D2TJZ0" FT /protein_id="CBG87118.1" FT /translation="MKKSTLALVVMGMAASASVQAAEVYNKNGNKLDVYGKVKAMHYFS FT DDNAKDGDQTYVRFGFKGETQINDQLTGYGRWEAEFAGNKPESESGQKTRLAFAGLKFG FT EYGSFDYGRNLGALYDVAAWTDMFPEFGGDGMAQTDNFMTKRASGLATYRNTDFFGLVD FT GLNLTLQYQGKNENRDVKKQNGDGFGTSLSYDFGGSDFAIIGAYANFDRTNEQNLQARG FT QGQNAEGWATGLKYDANNVYLATIYSETRNMAPISGGFANKAQNFEAVAQYQFDFGLRP FT SVGYVQSKGKDIEGIGDEDIVKYIDVGMTYYFNKNMSAFVDYKINQIDDDNQLGVSSDD FT IVALGMTYQF" FT misc_feature complement(359685..360656) FT /gene="phoE" FT /locus_tag="ROD_03361" FT /note="HMMPfam hit to PF00267, Porin, Gram-negative type, FT score 8.9e-200" FT /inference="protein motif:PFAM:PF00267" FT misc_feature complement(359772..359822) FT /note="PS00576 General diffusion Gram-negative porins FT signature." FT /inference="protein motif:Prosite:PS00576" FT sig_peptide complement(360672..360734) FT /gene="phoE" FT /locus_tag="ROD_03361" FT /note="Signal peptide predicted for ROD03361 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 21 and 22" FT CDS 361020..362123 FT /transl_table=11 FT /gene="proB" FT /locus_tag="ROD_03371" FT /product="glutamate 5-kinase" FT /EC_number="2.7.2.11" FT /db_xref="GOA:D2TJZ1" FT /db_xref="InterPro:IPR001048" FT /db_xref="InterPro:IPR001057" FT /db_xref="InterPro:IPR002478" FT /db_xref="InterPro:IPR005715" FT /db_xref="InterPro:IPR011529" FT /db_xref="InterPro:IPR015947" FT /db_xref="InterPro:IPR019797" FT /db_xref="UniProtKB/TrEMBL:D2TJZ1" FT /protein_id="CBG87119.1" FT /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRI FT VIVTSGAIAAGREHLGYPELPATIATKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLT FT RADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGAD FT KLLLLTDQQGLFTADPRTNPQAELIQDVYGIDDALRSIAGDSVSGLGTGGMGTKLQAAD FT VACRAGIDTIIAAGSRPGVIGDVMDGISVGTRFHAQASPLENRKRWIFGAPPAGEITVD FT EGATAAILQRGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAG FT HHSQQIDAILGYEYGPVAVHRDDMITR" FT misc_feature 361032..361724 FT /gene="proB" FT /locus_tag="ROD_03371" FT /note="HMMPfam hit to PF00696, FT Aspartate/glutamate/uridylate kinase, score 4.3e-59" FT /inference="protein motif:PFAM:PF00696" FT misc_feature 361638..361703 FT /note="PS00902 Glutamate 5-kinase signature." FT /inference="protein motif:Prosite:PS00902" FT misc_feature 361845..362069 FT /gene="proB" FT /locus_tag="ROD_03371" FT /note="HMMPfam hit to PF01472, PUA, score 8.5e-30" FT /inference="protein motif:PFAM:PF01472" FT CDS 362134..363384 FT /transl_table=11 FT /gene="proA" FT /locus_tag="ROD_03381" FT /product="gamma-glutamyl phosphate reductase" FT /EC_number="1.2.1.41" FT /db_xref="GOA:D2TJZ2" FT /db_xref="InterPro:IPR000965" FT /db_xref="InterPro:IPR012134" FT /db_xref="InterPro:IPR015590" FT /db_xref="InterPro:IPR016161" FT /db_xref="InterPro:IPR016162" FT /db_xref="InterPro:IPR016163" FT /db_xref="InterPro:IPR020593" FT /db_xref="UniProtKB/TrEMBL:D2TJZ2" FT /protein_id="CBG87120.1" FT /translation="MLEQMGKAAKAASYKLALLSSREKNRVLEKIADELEAQTDTILRA FT NAQDVADARENGLSDAMLDRLALTSARLKAIADDVRQVCHLADPVGQVMDGGLLDSGLR FT LERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAAILRGGKETCRTNAATVRVIQQAL FT TACGLPEAAVQAIESPDRALVNEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGI FT GVCHIFVDDSAEIAPALNIIVNAKTQRPSTCNTVETLLVHQEIAGRFLPALSEKMAGCG FT VTLHADDVAMPILQGPAKRVPLQPEELDNEFLSLDLNVVIVQDIDDAIAHIREHGTQHS FT DAILTRTIHNASRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLE FT ALTTYKWIGIGDDTIRA" FT misc_feature 362137..363354 FT /gene="proA" FT /locus_tag="ROD_03381" FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase, FT score 5.1e-07" FT /inference="protein motif:PFAM:PF00171" FT misc_feature 363097..363162 FT /note="PS01223 Gamma-glutamyl phosphate reductase FT signature." FT /inference="protein motif:Prosite:PS01223" FT tRNA 363498..363570 FT /locus_tag="ROD_t04" FT /product="transfer RNA-Thr" FT /anticodon=(pos:363531..363533,aa:Thr) FT /note="tRNA Thr anticodon CGT, Cove score 73.64" FT misc_feature 363963..378377 FT /note="CR_GI1" FT repeat_region complement(363963..364002) FT /note="40 bp inverted repeat flanking GI1. This is an FT imperfect repeat (last 2 bp mismatch) of the 40 bp at 5' FT terminus of ISEc14 which is also repeated 0-2 times in FT tandem adjacent to each copy of this IS element in the CR FT genome, immediately upstream and/or inverted downstream." FT CDS complement(364176..365051) FT /transl_table=11 FT /gene="espS" FT /locus_tag="ROD_03391" FT /product="T3SS effector protein EspS" FT /db_xref="UniProtKB/TrEMBL:D2TJZ3" FT /protein_id="CBG87121.1" FT /translation="MFSIKGYLPISASVSVPAENHSNTLGILGKRTIETTPEKKGLLVF FT LGEKSVGQQTLNIIGQNICRAITGKPLYDLLFLKKDTRDDFQEKKMEYIYPDINKEHLK FT SSDQDVAVTAAAHIVITEMNVLLPENLTPGDYRKIYIPGIGLSGLPVLQCGDEMLSPSN FT IVNRLHENNLHKIKDIRLTSCHSADIYANKDFSPEEIKKALTPNSGWLARALFGEQCSL FT ATKVYKEFECRGIDVSVSGYNGKGVFYVREHGKPTTHLRSTTVPATPDHTVRRSDFRVS FT LGRTQPTDID" FT CDS complement(365395..366687) FT /transl_table=11 FT /gene="espI" FT /gene_synonym="nleA" FT /locus_tag="ROD_03401" FT /product="T3SS effector protein NleA/EspI" FT /db_xref="UniProtKB/TrEMBL:D2TJZ4" FT /protein_id="CBG87122.1" FT /translation="MNIQPNIHSGITTQNNQQHHHAEQVPVSSSIPRSDLPPNCEAGFV FT VHIPEDIQQHVPECGETTALLSLIKDEGLLSGLDKYLAPHLEEGSLGKKALDTFGLFNV FT TQMALEIPSSVPGISGKYGVQMNIVKPDIHPTTGNYFLQLFPLHDEIGFNFKDLPGPLK FT NALTNSSISATASTVAPTPNDPMPWFGLTAQVVRNHGVELPIVKTENGWKLVGETPLTP FT DGPKANYTEEWVIRPGEADFKYGTSPLQATLGLEFGAHFKWDLDNPNTKYAILTNAAAN FT AIGAAGGFAVSKVPGIDPMLSPHVGAMLGQAAGHAVQCNTPGLKPDTILWWAGATFGAA FT DLNKAEFDKVRFTDYPRIWFHAREGALFPNKQDIARVTGADIKAMEEGVPVGHQHPKPE FT DVVIDIEGGNSPHHNPSNYVDTFEIIQETRV" FT tRNA 367188..367261 FT /locus_tag="ROD_t05" FT /product="transfer RNA-Thr" FT /anticodon=(pos:367220..367222,aa:Thr) FT /note="tRNA Thr anticodon GGT, Cove score 22.17" FT CDS join(367524..367910,367914..368174) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_03411" FT /product="IS3 family transposase B (pseudogene)" FT /note="pseudogene, N-terminus missing, C-terminal part FT truncated by premature stop codon" FT repeat_region 367524..368174 FT /note="IS3 family insertion sequence fragment. 85% DNA ID FT to IS911" FT misc_feature join(367653..367910,367914..368135) FT /locus_tag="ROD_03411" FT /note="HMMPfam hit to PF00665, Integrase, catalytic core, FT score 3.6e-30" FT /inference="protein motif:PFAM:PF00665" FT CDS 369350..369718 FT /transl_table=11 FT /locus_tag="ROD_03421" FT /product="putative exported virulence protein" FT /note="similar to dispersin Aap in EAEC and virulence FT factor CexE in ETEC" FT /db_xref="UniProtKB/TrEMBL:D2TJZ5" FT /protein_id="CBG87124.1" FT /translation="MKLIGKFIGFAIMTISFYSFAGGGASSWIPNVAPSACVNIDESRI FT SFTWNNNPECEKAISSGYASGVRIMGSASYVPDTTIAQFNKVLKRNMSLTIIDLDIYGS FT VNGYPAKLATMPIFRWES" FT sig_peptide 369350..369412 FT /locus_tag="ROD_03421" FT /note="Signal peptide predicted for ROD03421 by SignalP 2.0 FT HMM (Signal peptide probability 0.998) with cleavage site FT probability 0.967 between residues 21 and 22" FT misc_feature 369368..369436 FT /locus_tag="ROD_03421" FT /note="1 probable transmembrane helix predicted for FT ROD03421 by TMHMM2.0 at aa 7-29" FT CDS 370190..371410 FT /transl_table=11 FT /gene="aatD" FT /locus_tag="ROD_03431" FT /product="putative membrane-spanning transport protein" FT /note="Similar to AatD, part of the Aat transporter in FT EAEC, note the different genomic location in relation to FT the rest of the aat cluster homologues compared to p042" FT /db_xref="UniProtKB/TrEMBL:D2TJZ6" FT /protein_id="CBG87125.1" FT /translation="MIEAFIPTLSLILLLKCAMKKRLFVIVLYLIIFNIIFFIFVFGKG FT SWGVIKTSYMLAPFALSLIINMQVVLAIYFREKGAGYVLLSSFFPPLFFSFWSFDLIMP FT SHPLMIFYQFDELYKILPRFNKNIINIIIIYALPFFFLLPLRKSMLLIIIMLLMFFIRW FT GLIEYEKLGIKVLVVQTGMFLSKHEEIVELRNEIFKYNNADIVIFSESPAIGFKEGSRT FT AFTRELLDEIKGKNDGKLYILNNYGFVDDKKYNYNLSLYIMNGSMRIKAKNKLVPLWEV FT PGLFYSKSDWDSPFFSVPSEKMIEQYKFRGLYINSYICYEAMFTKHNSDVNDLTIIQSN FT YESFKKGYDRIVKNGNVLAYVNKSSSFKNFISVQNMGGTIFVDNTGKFHWDVYKKSLKQ FT AIFLLEI" FT misc_feature join(370250..370318,370346..370414,370433..370501, FT 370568..370621,370634..370687) FT /gene="aatD" FT /locus_tag="ROD_03431" FT /note="5 probable transmembrane helices predicted for FT ROD03431 by TMHMM2.0 at aa 21-43, 53-75, 82-104, 127-144 FT and 149-166" FT misc_feature 370421..370444 FT /note="PS00030 Eukaryotic putative RNA-binding region RNP-1 FT signature." FT /inference="protein motif:Prosite:PS00030" FT CDS join(371820..371936,371936..371941,371941..371958, FT 371962..372081,372081..372218) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_03432" FT /product="putative transposase (fragment)" FT /note="pseudogene, N-terminus missing, C-terminal part FT truncated by frameshift mutations" FT CDS 374038..375177 FT /transl_table=11 FT /gene="aatP" FT /locus_tag="ROD_03451" FT /product="AatP, permease" FT /db_xref="GOA:D2TJZ7" FT /db_xref="InterPro:IPR003838" FT /db_xref="UniProtKB/TrEMBL:D2TJZ7" FT /protein_id="CBG87127.1" FT /translation="MLSMSIYILEAIISLKENIRYALTFILFLSLSFLGVIITDSLIYS FT VSMQAEKELKSRGDNIISIELYQHEKKDNIDKVLNKYYTKLSYSQRSFLTGGNSPYSDE FT AISVIAIDKAGINLLMGGEFDDSLFEGNVAVYNNNNLDISNKPQEIFFNGVPFQIIGVK FT NKSKAEFLDSLGLSPGNSNEKYYIPLDTLFRFNLDNEIDNIQIIFDKDVTTEMSTSIKN FT QLKKNNIDKYMITTSLDARAIVERVLNRFSLLTNSIYLLLTITAIISCIVVCKRNFQSR FT STEFALKIIHGISYKEIQIVVVIETIFTVIVSLLLSIAISILSIMLLSSILNISVKIRW FT LMILMSLSAVLILCFIANLLYGNKTFKINPIELIKARTK" FT misc_feature join(374098..374166,374788..374856,374938..375006, FT 375049..375117) FT /gene="aatP" FT /locus_tag="ROD_03451" FT /note="4 probable transmembrane helices predicted for FT ROD03451 by TMHMM2.0 at aa 21-43, 251-273, 301-323 and FT 338-360" FT misc_feature 374638..375147 FT /gene="aatP" FT /locus_tag="ROD_03451" FT /note="HMMPfam hit to PF02687, Protein of unknown function FT DUF214, permase predicted, score 5.5e-05" FT /inference="protein motif:PFAM:PF02687" FT misc_feature 374815..374847 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 375174..376382 FT /transl_table=11 FT /gene="aatA" FT /locus_tag="ROD_03461" FT /product="AatA, outer membrane protein" FT /db_xref="GOA:D2TJZ8" FT /db_xref="InterPro:IPR003423" FT /db_xref="UniProtKB/TrEMBL:D2TJZ8" FT /protein_id="CBG87128.1" FT /translation="MRFNKKYMVIILANLLVGKDVFSCSLNMYLSKLESYELFKLEQED FT SLLQNKSVASSFLPNVSIGMGQYINNNTGLVDIGRSSFYIAASQLIFSGESLGKNSEKE FT ENDNKRRIISFEKDKNEQLLKLYADILQYKYLKENISLILRRLDKLKLEYNKTVLDLKS FT GIIPSLEVDVKSLNVLKMESSLNRLKADYELLENKINKNYSIPPQNISKITENDILSCK FT TISYRELIDKNKHNKLQQADIELDINNASLLPSIYLSIGLTPKNEGALRDINLREMNYN FT GGISVNFPINNIFSAIDNQKKYAISVTKARLESERDHEQLLIANRNILNEYLAIKRNIP FT ILKKEVQLKNRRMEYKLWLVKEKKENILSYLDSQDELYEAEINLKKNERDLKYYQMYLN FT FIN" FT CDS 376306..377118 FT /transl_table=11 FT /gene="aatB" FT /locus_tag="ROD_03471" FT /product="AatB, putative membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TJZ9" FT /protein_id="CBG87129.1" FT /translation="MKQKLILKKMNVILNIIRCILILLINSFSLSSYADTYYGVLRGSE FT SLTFKSPYSGFITLNSLREGDIGKAGKLFTIHNYEYNNNKRILSLKIKNAEKQKKRIQR FT EYQDGLSAYQKGFLSKHDLYSYEDKLDNMELSIISLRSEINSLNDILHLGDVNMEKPFI FT IRNINVNNQQYVNSGDLLMNIELLDRFYVDIKIDPVVFQGNIKDKNINYISLVGNMKGK FT ASVRRISGIVDRTSSKTSGMRMVTLLIHGDSASLQALLDTAFEIRIND" FT sig_peptide 376306..376407 FT /gene="aatB" FT /locus_tag="ROD_03471" FT /note="Signal peptide predicted for ROD03471 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 34 and 35" FT misc_feature 376339..376407 FT /gene="aatB" FT /locus_tag="ROD_03471" FT /note="1 probable transmembrane helix predicted for FT ROD03471 by TMHMM2.0 at aa 12-34" FT CDS 377111..377740 FT /transl_table=11 FT /gene="aatC" FT /locus_tag="ROD_03481" FT /product="AatC, ATP binding protein of ABC transporter" FT /db_xref="GOA:D2TK00" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TK00" FT /protein_id="CBG87130.1" FT /translation="MINLYIHKKKFRDKTILIDTSLKIMEGGFYIITGPSGVGKSSLLN FT IIGLLDGDFYGDYMFYDEKIYFYDCNKTQELRRSYFGYIFQDSLINERQDLIRNILCSV FT EYSKQKEKKKTVDHFLSMVGLHFKNGCSSVLSGGEKQRLALARALIKQPKILLADEPTA FT SLDKENKKIIMSILNSFNNEGGTIIMVTHDLELINNNMEVITLSNC" FT misc_feature 377189..377737 FT /gene="aatC" FT /locus_tag="ROD_03481" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 4.9e-35" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 377210..377233 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 377513..377557 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT repeat_region 378338..378377 FT /note="40 bp inverted repeat flanking GI1. This is a FT perfect repeat of the 40 bp at 5' terminus of ISEc14 which FT is also repeated 0-2 times in tandem adjacent to each copy FT of this IS element in the CR genome, immediately upstream FT and/or inverted downstream." FT CDS complement(378404..379753) FT /transl_table=11 FT /locus_tag="ROD_03491" FT /product="putative porin" FT /db_xref="GOA:D2TK01" FT /db_xref="InterPro:IPR007049" FT /db_xref="UniProtKB/TrEMBL:D2TK01" FT /protein_id="CBG87131.1" FT /translation="MKNMNKLIKSGMMLLALLHPFLALANETLFSPTAKNMTGEWGGVR FT TDLRRHGYDFTLEYSAMTATNMSGGYDRDKTLRYSDQYILGIDMDLEKIFGIQDGEFKA FT SVNNRNGRDLTQDRLQDPRAPVIGSGVQSNYGREQTWHATQFWFKKIGGDKKLDLKVGL FT MPPGEDFDNSGCFFQNLSLCGSLAGHGSGVWYNTPIGQWGGRIKYSPIPALYVQAGAFQ FT YNPDYATRHGSFKLDGTGHLGYMYLFELGYLPAFDTAKLAGVWKIGGWYNTADANDVLD FT DDNGDPYVLTHQAARRHGGRYGGYLYIGQQITHSRNQHQNGLSLFGHLAINDKKTATMD FT YQIQAGAIYKGPFASRPQDFISFGVSKMHANDRVARRAQFLNQLRGIDDYDNPLYVPVR FT KAEYAAELHYSFRITPWLTVRPNLQLLAHPGGSEEIKNAWVVGNQVTVKF" FT misc_feature complement(378407..379534) FT /locus_tag="ROD_03491" FT /note="HMMPfam hit to PF04966, Carbohydrate-selective porin FT OprB, score 2e-113" FT /inference="protein motif:PFAM:PF04966" FT sig_peptide complement(379679..379753) FT /locus_tag="ROD_03491" FT /note="Signal peptide predicted for ROD03491 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 25 and 26" FT CDS complement(379868..381265) FT /transl_table=11 FT /locus_tag="ROD_03501" FT /product="putative MSF transporter protein" FT /db_xref="GOA:D2TK02" FT /db_xref="InterPro:IPR005828" FT /db_xref="InterPro:IPR005829" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TK02" FT /protein_id="CBG87132.1" FT /translation="MSTQVITSDYAVASGTASTPDALLARLERLPITRRLKAIRVIVGL FT STFFDAYTIIAIAFALPQLTQEWGLTPTFVGLIIAASYVGQLCGALFFGSLAEKIGRIG FT VLRITIIMFVLMDAACLFAWNGWSILIIRFLQGVGIGAEVPVASAYINEFVGAKKRGRF FT FLLYEVIFPIGMMFAGLVGYFLVPIYGWKVMFLIGLVPSALTVPLRWLMPESPRWLTAK FT GRLKEAENVVSTLESEVIRRGMTLPEPEIKAPTVHKAAPEGAKALFSGIYKSRTFMLWG FT LWLTVYSVNNGMITWFPTLYKTWFNLSLDTSLAYGWITSSCGVVASVICALMIDRVGRK FT RWYTWAFLLAIVPLIALSVLGAKSAVEILILGSLTYAILQTIAFSLYLYAAELYPTRLR FT AIGTAYSSAWLRAGSSIGPLMVGFIVSGFGIRFVFITFTVIALIGGLITWLFAIETKGK FT SLEELSP" FT misc_feature complement(379889..379912) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(join(379907..379966,379976..380044, FT 380102..380170,380183..380242,380261..380329, FT 380372..380440,380630..380698,380708..380776, FT 380813..380881,380891..380959,380978..381046, FT 381074..381142)) FT /locus_tag="ROD_03501" FT /note="12 probable transmembrane helices predicted for FT ROD03501 by TMHMM2.0 at aa 42-64, 74-96, 103-125, 129-151, FT 164-186, 190-212, 276-298, 313-335, 342-361, 366-388, FT 408-430 and 434-453" FT misc_feature complement(379988..381139) FT /locus_tag="ROD_03501" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 5.2e-49" FT /inference="protein motif:PFAM:PF07690" FT misc_feature complement(380300..380332) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(380786..380863) FT /note="PS00217 Sugar transport proteins signature 2." FT /inference="protein motif:Prosite:PS00217" FT misc_feature complement(381011..381046) FT /note="PS00962 Ribosomal protein S2 signature 1." FT /inference="protein motif:Prosite:PS00962" FT CDS 381691..382722 FT /transl_table=11 FT /locus_tag="ROD_03511" FT /product="LacI-family transcriptional regulator" FT /db_xref="GOA:D2TK03" FT /db_xref="InterPro:IPR000843" FT /db_xref="InterPro:IPR001761" FT /db_xref="InterPro:IPR010982" FT /db_xref="UniProtKB/TrEMBL:D2TK03" FT /protein_id="CBG87133.1" FT /translation="MDQESELNDLPEKKLATMRDVARAAGVSVSTVSRVLDERLPTSRS FT TSADKIRQVARELGYRRDYVASSLRRGDTGTLGVLVPRLTDAVTAMLFEEIARAAARRG FT YFAIVATCGDSKEQEKNAVESLLDRRVDGLIMSTCRLDDPLPQTLRERDVPHVLALRTD FT GFSPSSVGDDELGGYLATRHLIDLGHRDIGLIGGPDFASNARNRRKGFERAMQEAGLRI FT EAEWCCHSDFNIASGEQQGVKILSQPHRPSALFAVNDELAIGVLAAAHQQGLVIGEDLS FT LVGYNDIPLVSRLPVALTSVRTPLEHIASNAVDMLLNPEINNNMRVTTPSLIPRKSTSS FT PRK" FT misc_feature 381736..381801 FT /note="Predicted helix-turn-helix motif with score FT 1987.000, SD 5.95 at aa 16-37, sequence FT ATMRDVARAAGVSVSTVSRVLD" FT misc_feature 381736..381798 FT /locus_tag="ROD_03511" FT /note="HMMPfam hit to PF00356, Bacterial regulatory FT protein, LacI, score 9.8e-10" FT /inference="protein motif:PFAM:PF00356" FT misc_feature 381742..381798 FT /note="PS00356 Bacterial regulatory proteins, lacI family FT signature." FT /inference="protein motif:Prosite:PS00356" FT misc_feature 381910..382545 FT /locus_tag="ROD_03511" FT /note="HMMPfam hit to PF00532, Periplasmic binding FT protein/LacI transcriptional regulator, score 4.3e-17" FT /inference="protein motif:PFAM:PF00532" FT CDS 382975..383904 FT /transl_table=11 FT /locus_tag="ROD_03521" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TK04" FT /db_xref="InterPro:IPR002220" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:D2TK04" FT /protein_id="CBG87134.1" FT /translation="MINIDLRGLTPAPVTPFTRDGRVDYDAIQRLGNWLGSIDGVKGLV FT VLGHAGEGTFLTQEEQANVIRAFVKSVDDKLPIIAGITGEGTEVAALEAKRAVAAGASA FT GLLYPSHGWLRFGYQDGAPQDRYRVVYEESGLPLILFQYPDVTKATYNLKTLLDISAQP FT GVFAMKNGVRNMRRWDTEIPVIRCERPDLQILSCHDEYLLHTAFDVDGFLVGYGNIAPE FT PLIEMIKAGKAGDYVKARQLHDRLLPVTKSVYHRGSHMEGTVALKHALVARGILEHATV FT RSPLLPLEKGAEKEIHDAMRAAELGRVR" FT misc_feature 382987..383886 FT /locus_tag="ROD_03521" FT /note="HMMPfam hit to PF00701, Dihydrodipicolinate FT synthetase, score 1.2e-18" FT /inference="protein motif:PFAM:PF00701" FT CDS 383956..384216 FT /transl_table=11 FT /locus_tag="ROD_03531" FT /product="hypothetical protein" FT /db_xref="GOA:D2TK05" FT /db_xref="InterPro:IPR002529" FT /db_xref="InterPro:IPR011234" FT /db_xref="UniProtKB/TrEMBL:D2TK05" FT /protein_id="CBG87135.1" FT /translation="MRIIGYFARLSFAVLHHNVGAFTSVSSLGDVILTGTPGGIGKKRT FT PPLFMQPGDRVEVEIEHIGCLINTVCSDELSFTGRLHPKIW" FT CDS 384289..385578 FT /transl_table=11 FT /gene="dcuA" FT /locus_tag="ROD_03541" FT /product="anaerobic C4-dicarboxylate transporter" FT /db_xref="GOA:D2TK06" FT /db_xref="InterPro:IPR004668" FT /db_xref="UniProtKB/TrEMBL:D2TK06" FT /protein_id="CBG87136.1" FT /translation="MILVQFLVVLLFLYIGMRVGGIGVGFAGGAGVIVLSALGATPGDM FT PMLVIVFIMVVIVAIAAMQEAGGIEYLVDLTERLLRRYPRLLVITAPLSTWLLTMMAST FT GQVSFACMPVIVGVAKENNIKPTRALALSVSASLLGIVASPISAAVIFFSGILEKGHSG FT WGYIELIAVSIPSTFLALLVTSVSYLCWDRIRQQDRLYDNPVQVKARNERTIPPYAGRS FT VLIFIIGLVVVLVYAIVTSPKLGLIAHPVMSSGQARVEMMLGVALLIVVCCRVNVHKVP FT SGSVFKTGMTSCICILGVAWLGSTFMDSNQQWLQSAVSSHLLDSPIMLAIIIMAASCFL FT YSQAASTKILFPAALSMGIAPAILVACFPATSSLFILPNYPTLLAAVEMDDTGYTRLGR FT HIIDHPFLLPGLASVLLSMLFATGLAYLIQ" FT misc_feature 384301..385371 FT /gene="dcuA" FT /locus_tag="ROD_03541" FT /note="HMMPfam hit to PF03605, Anaerobic c4-dicarboxylate FT membrane transporter, score 2.3e-118" FT /inference="protein motif:PFAM:PF03605" FT misc_feature join(384331..384399,384424..384477,384574..384642, FT 384676..384744,384787..384855,384937..385005, FT 385063..385122,385141..385209,385252..385311, FT 385348..385416,385504..385572) FT /gene="dcuA" FT /locus_tag="ROD_03541" FT /note="11 probable transmembrane helices predicted for FT ROD03541 by TMHMM2.0 at aa 15-37, 46-63, 96-118, 130-152, FT 167-189, 217-239, 259-278, 285-307, 322-341, 354-376 and FT 406-428" FT misc_feature 384589..384621 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 385270..385302 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 385357..385389 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(385707..387098) FT /transl_table=11 FT /gene="puuP" FT /locus_tag="ROD_03551" FT /product="putrescine importer" FT /db_xref="GOA:D2TK07" FT /db_xref="InterPro:IPR002293" FT /db_xref="InterPro:IPR004841" FT /db_xref="UniProtKB/TrEMBL:D2TK07" FT /protein_id="CBG87137.1" FT /translation="MATNTSLNIPAQAGKTSLRKSLKLWQVVMMGLAYLTPMTVFDTFG FT IVSGISNGHVPASYLLALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSINPHVGFMVGW FT SSLLDYLFLPMINVLLAKIYLSALFPEVPPWVWVATFVTILTAANLKSVNLVANFNTLF FT ILVQIAIMVVFIVLVVHGLHKGEGTGTVWSLQPFISQNAHLIPIITGATIVCFSFLGFD FT AVTTLSEETPDAARVIPKAIFLTAIYGGIIFIVASFFMQLFFPDISRFKDPDAALPEIA FT LYVGGKLFQSIFLCTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVHPKWRTP FT ALNVIMVGIVSLSALFFDLVTATALINFGALVAFTFVNLSVFNHFWRRKGYNKSWKDHF FT HYLLMPLIGALTVGVLWINLEITSLTLGIIWAMLGGMYLCYLVRRYRKVPLYNAEQKII FT AESEG" FT misc_feature complement(join(385770..385838,385848..385904, FT 385941..386009,386019..386078,386163..386231, FT 386307..386375,386436..386495,386553..386615, FT 386628..386696,386739..386807,386868..386936, FT 386979..387038)) FT /gene="puuP" FT /locus_tag="ROD_03551" FT /note="12 probable transmembrane helices predicted for FT ROD03551 by TMHMM2.0 at aa 21-40, 55-77, 98-120, 135-157, FT 162-182, 202-221, 242-264, 290-312, 341-360, 364-386, FT 399-417 and 421-443" FT misc_feature complement(385971..387023) FT /gene="puuP" FT /locus_tag="ROD_03551" FT /note="HMMPfam hit to PF00324, Amino acid FT permease-associated region, score 5.2e-29" FT /inference="protein motif:PFAM:PF00324" FT CDS complement(387409..388827) FT /transl_table=11 FT /gene="puuA" FT /locus_tag="ROD_03561" FT /product="gamma-glutamylputrescine synthetase" FT /EC_number="6.3.1.11" FT /db_xref="GOA:D2TK08" FT /db_xref="InterPro:IPR008146" FT /db_xref="InterPro:IPR008147" FT /db_xref="InterPro:IPR014746" FT /db_xref="UniProtKB/TrEMBL:D2TK08" FT /protein_id="CBG87138.1" FT /translation="METNIVEVESYVQQSEERRVSAFAQEVKCYLEQYPNTQYVDVLLT FT DLNGCFRGKRIPVSGLRKLEKGCYFPASVFAMDILGNVVEEAGLGQDVGEPDRTCVPVL FT GTLTPSTADPEYIGQMLLTMIDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVELEFY FT LLDRKRDAEGYLQPPCAPGTDDRNTQSQVYSVDNLNHFADVLNDIDEIAQLQKIPADGA FT VAEASPGQFEINLYHTDNVLDACDDALALKRLVRLMAEKHKMHATFMAKPYEEHAGSGM FT HIHISLLNNRGDNAFSDKDGEDSALLKKALSGMIDLMPSSMALLAPNVNSYRRFQPGMY FT VPTQASWGHNNRTVALRIPCGDRQNHRVEYRVAGADANPYLVMATIFAGILHGLDNDLP FT LQKEVEGNGLVQEGLPFPIRQSDALWEFMQNDHLRHYLGERFCHVYHACKNDELLQFER FT LITDTEIEWMLKNA" FT misc_feature complement(387646..388431) FT /gene="puuA" FT /locus_tag="ROD_03561" FT /note="HMMPfam hit to PF00120, Glutamine synthetase, FT catalytic region, score 2.2e-107" FT /inference="protein motif:PFAM:PF00120" FT misc_feature complement(387970..388017) FT /note="PS00181 Glutamine synthetase putative ATP-binding FT region signature." FT /inference="protein motif:Prosite:PS00181" FT CDS 389040..389804 FT /transl_table=11 FT /gene="puuD" FT /locus_tag="ROD_03571" FT /product="gamma-glutamyl-gamma-aminobutyrate hydrolase" FT /EC_number="3.5.1.-" FT /db_xref="GOA:D2TK09" FT /db_xref="InterPro:IPR011697" FT /db_xref="InterPro:IPR017926" FT /db_xref="UniProtKB/TrEMBL:D2TK09" FT /protein_id="CBG87139.1" FT /translation="MENIMYRPVIGIVMCRNRLKGHETQTLQEKYLNAIIRAGGLPIAL FT PHALAEPELLNELLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAAL FT ERRIPIFAICRGLQEMVVATGGSLHRKLCEEPDLLEHREDPELPVEQQYAPSHEVQVIE FT GGLLSRLLPDCSNFWVNSLHGQGAKVVSPRLRVEARAPDGVIEAVSVNDYPFALGVQWH FT PEWNSSEYALSRILFDGFITACKNHIAEKQRL" FT misc_feature 389061..389711 FT /gene="puuD" FT /locus_tag="ROD_03571" FT /note="HMMPfam hit to PF07722, Peptidase C26, score FT 3.9e-110" FT /inference="protein motif:PFAM:PF07722" FT CDS 389831..390388 FT /transl_table=11 FT /gene="puuR" FT /locus_tag="ROD_03581" FT /product="transcriptional regulator of the polyamine FT metabolism genes" FT /db_xref="GOA:D2TK10" FT /db_xref="InterPro:IPR001387" FT /db_xref="InterPro:IPR010982" FT /db_xref="InterPro:IPR011051" FT /db_xref="InterPro:IPR013096" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:D2TK10" FT /protein_id="CBG87140.1" FT /translation="MSDDGLAPGKRLSEIRQKQGLSQRRAAELSGLTHSAISTIEQDKV FT SPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEIGSQGVSMKLVHNGNPN FT RTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTVNGQTYHLVAGQSYAINTGIP FT HSFSNTSAGVCRIISAHTPTTF" FT misc_feature 389864..390028 FT /gene="puuR" FT /locus_tag="ROD_03581" FT /note="HMMPfam hit to PF01381, Helix-turn-helix type 3, FT score 7.1e-16" FT /inference="protein motif:PFAM:PF01381" FT misc_feature 389891..389956 FT /note="Predicted helix-turn-helix motif with score FT 1738.000, SD 5.11 at aa 21-42, sequence FT LSQRRAAELSGLTHSAISTIEQ" FT misc_feature 390158..390370 FT /gene="puuR" FT /locus_tag="ROD_03581" FT /note="HMMPfam hit to PF07883, Cupin 2, conserved barrel, FT score 2.6e-22" FT /inference="protein motif:PFAM:PF07883" FT CDS 390609..392096 FT /transl_table=11 FT /gene="puuC" FT /locus_tag="ROD_03591" FT /product="gamma-glutamyl-gamma-aminobutyraldehyde FT dehydrogenase" FT /EC_number="1.2.1.-" FT /db_xref="GOA:D2TK11" FT /db_xref="InterPro:IPR015590" FT /db_xref="InterPro:IPR016160" FT /db_xref="InterPro:IPR016161" FT /db_xref="InterPro:IPR016162" FT /db_xref="InterPro:IPR016163" FT /db_xref="UniProtKB/TrEMBL:D2TK11" FT /protein_id="CBG87141.1" FT /translation="MNFHHLAYWQDKALNLALETRLFINGEYCAAADGTTFETIDPFSE FT VPLANIARGKSADIDFAVKGARAVFESGVWSNAAPAKRKAALNKLADLIEANAEELALL FT ETLDTGKPIRHSLRDDVPGAARAIRWYAEALDKVYGEVATTGSQELAMIVREPVGVVAA FT IVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLTALRLAGLAKEAGIPDGVLNVVSG FT FGHEAGQALSRHPDIDVIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCP FT DLQQAVSATASGIFYNQGQVCIAGTRLLLEDSIADEFLNLLQQQISHWQPGHPLDPSTT FT MGTLIDSAHADTVHSFIRDGEQKGQLLVDGRQTAWPAAIGPTIFVDVDPEDRLSQEEIF FT GPVLVVTRFTSEEQALALANNSQYGLGAAVWTRDLSRAHRLSRRLKAGSVFVNNYNDGD FT MTVPFGGYKQSGNGRDKSLHALDKFTEIKTIWISLEA" FT misc_feature 390672..390707 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT /inference="protein motif:Prosite:PS00070" FT misc_feature 390690..392075 FT /gene="puuC" FT /locus_tag="ROD_03591" FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase, FT score 2.9e-235" FT /inference="protein motif:PFAM:PF00171" FT misc_feature 390753..390776 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 391404..391427 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT /inference="protein motif:Prosite:PS00687" FT misc_feature 391491..391526 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT /inference="protein motif:Prosite:PS00070" FT misc_feature 391764..391802 FT /note="PS00018 EF-hand calcium-binding domain." FT /inference="protein motif:Prosite:PS00018" FT CDS 392099..393379 FT /transl_table=11 FT /gene="puuB" FT /locus_tag="ROD_03601" FT /product="gamma-glutamylputrescine oxidoreductase" FT /EC_number="1.4.3.-" FT /db_xref="GOA:D2TK12" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/TrEMBL:D2TK12" FT /protein_id="CBG87142.1" FT /translation="MTEHTTSYYAASANKYTPFPTLNESIDCDVCIVGGGYTGLSSALH FT LAEAGYDVVLLEGARIGFGASGRNGGQLVNSYSRDIDVIERTYGMDTARMLGSMMFEGG FT EIIRERIQRYQIECDYRPGGLFVAMNHKQLTTLEEQKENWERYGNKQLELLDEKAIRRE FT VDSDRYTGALLDHSGGHIHPLNLAIGEADAIRLNSGRVYELSAVTSIQHTSPAVVTTAQ FT GKVTAKYVIVAGNAYLGDQVEPALAKRSMPCGTQVITTEPLSDKLARSLIPNNYCVEDC FT NYLLDYYRLTADNRLLYGGGVVYGARDPDDVERLVLPKMLKTFPQLKGVKVDYRWTGNF FT LLTLSRMPQFGRLDKNIYYMQGYSGHGVTCTHLAGRLISELLRGDAERFDAFANLPHYP FT FPGGRTLRVPFTAMGAAYYSLRDRLGV" FT misc_feature 392183..393241 FT /gene="puuB" FT /locus_tag="ROD_03601" FT /note="HMMPfam hit to PF01266, FAD dependent FT oxidoreductase, score 2.7e-102" FT /inference="protein motif:PFAM:PF01266" FT CDS complement(393564..396377) FT /transl_table=11 FT /locus_tag="ROD_03611" FT /product="putative adhesin autotransporter" FT /note="Similar to TibA, but note the different N-terminal" FT /db_xref="GOA:D2TK13" FT /db_xref="InterPro:IPR003991" FT /db_xref="InterPro:IPR004899" FT /db_xref="InterPro:IPR005546" FT /db_xref="InterPro:IPR006315" FT /db_xref="InterPro:IPR006626" FT /db_xref="InterPro:IPR011050" FT /db_xref="InterPro:IPR012332" FT /db_xref="UniProtKB/TrEMBL:D2TK13" FT /protein_id="CBG87143.1" FT /translation="MSVTVTDRGTIVYKALQGRCIASGLLFGDITNGYRRRTAGAVILM FT RQDDRKIQEHINIFLFPFLAISLAKLTRIAYVLNTSCFLQSITRVPEMKVPKSRLAVML FT TALSMVPSTEAVSVSGTSVTVTDDQSTTPYQITSNGELIVDGGSVGALSVTDSTLTIHK FT GGTYAGSDVPAAIYSSNSTINLDDVTATTSNTQQSVLSVASNLTIAGSTLTQNGGSAVI FT GINNANATGSPQTLISNSTLNLVNSSGNGGAVVLESTSTSTISGSVVNSASNGINYINA FT SGSLLDTTVDAGGYGIQTQGIAFNYLPANVIVRNAIITGAQGGALLSDGELNIQSSSVS FT GTGEGANGITAGSRGVTETPTTLELISSQVKGNNNGILITPTTPGGSDHQVNMIINNSA FT VTGETGAAISVENMTADISILNGSSFSGGDNILLNNTNNGSANVSVENASLSGNIVTDN FT SSTTTVSLLQNAQLTGLLTGATSLNLGENAVWNITGNDNLGVLAVNNGVVNFGTPDTGF FT KTLTVSTLSGTGRFLMNTNLAANTGDLLNVTGEATGTHTLAIANTGSEPQSGGEDLRVV FT HTGSGNAAFSVEGGKVDAGAWQYSLSKQGTDWYLTQDSNGVTPPDPGTPAPSENDRTTS FT ASTDAMLSLASAPVAIFNEEMQSLRFRHGDIQSNTLIPGGVWGRVLGSDNRISGPYGSA FT YKLGQTGMETGADTVIDVDSGRVAIGAFVSYTSNKISHARGGQSSVNSTGGGVYATWMA FT DSGLYVDAVAKYNHFSTDVNARMADSTPVKGHYSQDAFGGSLETGKIFTTPSPVWLQPY FT IRATAMQAGGEDVKLDNGMETNIDTTNSFQSEAGVIAGVDVSVAGNTVKPYISLAVSHE FT WVDNNQVTINDTWNFDNDSSGTIGKYGAGLSAQISKNAGVWLEGKYQNGEHIESPITAN FT AGFRITF" FT misc_feature complement(393609..394370) FT /locus_tag="ROD_03611" FT /note="HMMPfam hit to PF03797, Autotransporter beta-domain, FT score 4.3e-36" FT /inference="protein motif:PFAM:PF03797" FT misc_feature complement(394542..394886) FT /locus_tag="ROD_03611" FT /note="HMMPfam hit to PF03212, Pertactin, score 1e-44" FT /inference="protein motif:PFAM:PF03212" FT misc_feature complement(396147..396215) FT /locus_tag="ROD_03611" FT /note="1 probable transmembrane helix predicted for FT ROD03611 by TMHMM2.0 at aa 55-77" FT CDS complement(396481..397071) FT /transl_table=11 FT /locus_tag="ROD_03621" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TK14" FT /protein_id="CBG87144.1" FT /translation="MNTYVISDNKFFLLGIANQENYAEGSEGSVIPVFSKNVSSTFKPC FT ERGAVVVLFISSSDERHRITSIRALHECRVLMLVKSTGKQEYYSHSGRQFPWIVPHDIG FT LADLRQHIVKARLTPFYRRYFTCTEVLLFRYLTQGISIQNMANLNLSCKYLYTLKRKII FT LKNNIDGHDAAAIMICRDIIAMSNITLSAERAA" FT CDS complement(397903..398328) FT /transl_table=11 FT /locus_tag="ROD_03631" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR014894" FT /db_xref="InterPro:IPR016124" FT /db_xref="UniProtKB/TrEMBL:D2TK15" FT /protein_id="CBG87145.1" FT /translation="MTLNCICNEGIIHFPDNAKCQTINVISLASGQAINITRDRPADGE FT NFEGYLQGQLRILVEKCNNYKQLSLQHCDSTAVFSKISKLTFSFKPAEGITYWQYIILA FT EREPGNIMLFTSVFNDRSTLDQGCREVDKLFKAFRPH" FT CDS complement(398345..399391) FT /transl_table=11 FT /locus_tag="ROD_03641" FT /product="putative fimbrial adhesin" FT /db_xref="GOA:D2TK16" FT /db_xref="InterPro:IPR000259" FT /db_xref="InterPro:IPR008966" FT /db_xref="InterPro:IPR014779" FT /db_xref="UniProtKB/TrEMBL:D2TK16" FT /protein_id="CBG87146.1" FT /translation="MYKLNVSLFIFVTALLLIAVPARADLRCGTDSTMLSNAGIDFAKD FT VPTQINSNTPIGTILYRKEMKLSIWCGKDINSTNSWDTSPEEIVIRRENLANMLGSNSG FT LELYVTINGERGTNAKIFHTGIETNIPWVSNSIDNSYLPRANVDITIELVKTGENNVLS FT VKSNTMKIFSVQSSLGTDTEMIFYLKNGKSTINFTTQTCDVNGSGNFTATIEELNISTI FT RSVGPVETPTRDFDVSIKCNADLWSTQNILMKITGNNIADMTDKGLFYWRDLSTGANAE FT GIALQLLQGVNGTTYIPVVPGENFVIGNFDKRLSTVTIPLRARYYATGNNFTAGDVQSV FT LFYNIDYE" FT misc_feature complement(398348..398815) FT /locus_tag="ROD_03641" FT /note="HMMPfam hit to PF00419, Fimbrial protein, FT C-terminal, score 8.6e-06" FT /inference="protein motif:PFAM:PF00419" FT sig_peptide complement(399320..399391) FT /locus_tag="ROD_03641" FT /note="Signal peptide predicted for ROD03641 by SignalP 2.0 FT HMM (Signal peptide probability 0.998) with cleavage site FT probability 0.997 between residues 24 and 25" FT misc_feature complement(399320..399373) FT /locus_tag="ROD_03641" FT /note="1 probable transmembrane helix predicted for FT ROD03641 by TMHMM2.0 at aa 7-24" FT CDS complement(399412..402000) FT /transl_table=11 FT /locus_tag="ROD_03651" FT /product="putative fimbrial usher protein" FT /db_xref="GOA:D2TK17" FT /db_xref="InterPro:IPR000015" FT /db_xref="UniProtKB/TrEMBL:D2TK17" FT /protein_id="CBG87147.1" FT /translation="MDVIMYNSKINGFKLSLVCTSIIIGLSTTHALADVYFNPDFLKDI FT SGQTTVDVSRFNGDFHILPGDYTPDIYLNGQLIDRARVTVRGDNEASQLCFNSALLTRL FT NLNTTRLSEESMAALEGRSECPHLETLIPGSRAYLNVSDMRLDVSIPQAYLNQAARGYV FT PPSIWSYGEKALYLSYNSTYFEQRSQGDTHQSFYGDMRGKFNLGAWMLHHSGAYSWDDR FT SGDRYNVFATNLQRDIPAWESRVLLGDATTSGDLFDSFSFRGIRLATAEQMLPDSLRGY FT APVVRGIARTNAKVTIKQRDRVIYETSVPPGEFAIEDLYPTGYSGDLQVMVTEADGSRS FT VFSVPFSSVAELLRPGRTNYSLTMGRLRNLNVSDEPYVFQGTWKRGISNTVTAYAGVMA FT TDFYYSGVLGSALGTPVGAFALDITGASFGKSMYEKNGVSVRASYSKHIATTNSNISLA FT AYRFSSSGYLDLHNAVYLADKIEHNNFDAGFDVFDRPRNRISLTLSQDLGNKSGQFYVS FT GYRENYWNNTNSNTQYQAGYNNTYKWLGYGLAVSRTETRNRDKETQYLLNFSIPLGSGR FT GLHTPNLNSYTTINKRGTSSQLEVSGVAGKHDLLNYNVSAGRDADNSYSGNLSGAYKFD FT DATLSGSFSKGKDYHSYSAGLSGSVVAFSDGIVTSPYEGLNTMAIISSKNAAGARVEGY FT AGVKLDSRGYALVPYLTPYRINNVAIDPKGLPFDVELDTTSQQIAPAQGAIVKLNYASH FT KGRMVLIRATTQEGDALPFGASVKDSKGEDVGVVAQGGQIYARLNVGKDRLNINWGNKQ FT QFSCTFDIDLKESSPEKNIERLNTVCDGDDPSLQQTLALTQYVSPDTDLM" FT misc_feature complement(399532..401898) FT /locus_tag="ROD_03651" FT /note="HMMPfam hit to PF00577, Fimbrial biogenesis outer FT membrane usher protein, score 4.4e-273" FT /inference="protein motif:PFAM:PF00577" FT sig_peptide complement(401902..402000) FT /locus_tag="ROD_03651" FT /note="Signal peptide predicted for ROD03651 by SignalP 2.0 FT HMM (Signal peptide probability 0.941) with cleavage site FT probability 0.892 between residues 33 and 34" FT CDS complement(402017..402736) FT /transl_table=11 FT /locus_tag="ROD_03661" FT /product="putative fimbrial chaperone protein" FT /db_xref="GOA:D2TK18" FT /db_xref="InterPro:IPR001829" FT /db_xref="InterPro:IPR008962" FT /db_xref="InterPro:IPR016147" FT /db_xref="InterPro:IPR016148" FT /db_xref="InterPro:IPR018046" FT /db_xref="UniProtKB/TrEMBL:D2TK18" FT /protein_id="CBG87148.1" FT /translation="MNSAARFFLIFSLALTSFQSFSGVIINGTRVIYPSDEKEITLRLE FT NKGEKPSLVQVWIDKGDSKAKVSLIESPFIILPPVFRIEPTQGQTLRISYTGSNLPQDR FT ESVFWLNVLDIPARQQKLPSNSIEMAFRSRIKLFYRPSSLNIASSSEQVEKLHWSTAPC FT QNKQCIVIKNPTPVFVTISTIKVMSGDKVLTSLTGSMLAPFGSDSYPVKVNPGNNSLFI FT EYVNDYGSSVKRQIKHE" FT misc_feature complement(402029..402289) FT /locus_tag="ROD_03661" FT /note="HMMPfam hit to PF02753, Bacterial pili assembly FT chaperone, score 4.1e-09" FT /inference="protein motif:PFAM:PF02753" FT misc_feature complement(402302..402670) FT /locus_tag="ROD_03661" FT /note="HMMPfam hit to PF00345, Bacterial pili assembly FT chaperone, score 3.3e-59" FT /inference="protein motif:PFAM:PF00345" FT misc_feature complement(402386..402439) FT /note="PS00635 Gram-negative pili assembly chaperone FT signature." FT /inference="protein motif:Prosite:PS00635" FT misc_feature complement(402650..402718) FT /locus_tag="ROD_03661" FT /note="1 probable transmembrane helix predicted for FT ROD03661 by TMHMM2.0 at aa 7-29" FT sig_peptide complement(402671..402736) FT /locus_tag="ROD_03661" FT /note="Signal peptide predicted for ROD03661 by SignalP 2.0 FT HMM (Signal peptide probability 0.997) with cleavage site FT probability 0.995 between residues 22 and 23" FT CDS complement(402955..403491) FT /transl_table=11 FT /locus_tag="ROD_03671" FT /product="putative major fimbrial subunit" FT /db_xref="GOA:D2TK19" FT /db_xref="InterPro:IPR000259" FT /db_xref="InterPro:IPR008966" FT /db_xref="InterPro:IPR014779" FT /db_xref="UniProtKB/TrEMBL:D2TK19" FT /protein_id="CBG87149.1" FT /translation="MKKVLLSSLVVLALGSTSAMAIDGTITINGKLTNATCKVTVDKST FT TGDATVTLPTLSVAKLAVAEATAGATNFTMKLTGCSGASKVRAFFEAGADVDASTGRLN FT NSSESSEVAKNVQIQLRDEADNILAAGNTSQRSNAATPLASGAANLNYSARYYATAAAE FT AGDVQSSVTYSIDYE" FT misc_feature complement(402958..403422) FT /locus_tag="ROD_03671" FT /note="HMMPfam hit to PF00419, Fimbrial protein, FT C-terminal, score 1.5e-26" FT /inference="protein motif:PFAM:PF00419" FT sig_peptide complement(403429..403491) FT /locus_tag="ROD_03671" FT /note="Signal peptide predicted for ROD03671 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.800 between residues 21 and 22" FT CDS complement(403585..403848) FT /transl_table=11 FT /locus_tag="ROD_03681" FT /product="putative membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TK20" FT /protein_id="CBG87150.1" FT /translation="MTAMHNLNKEEVHQVSGGGLTSDIINYFRNLNTDSETGKQEWQSV FT VTTPSPALQKGDQYGAAIVTGLAAIALFSVRVVGGALSGIFR" FT misc_feature complement(403609..403677) FT /locus_tag="ROD_03681" FT /note="1 probable transmembrane helix predicted for FT ROD03681 by TMHMM2.0 at aa 58-80" FT CDS complement(403860..404174) FT /transl_table=11 FT /locus_tag="ROD_03691" FT /product="putative membrane protein" FT /note="Note the similarity with Colicin V in Xylella but no FT apparent biological evidence to support this" FT /db_xref="UniProtKB/TrEMBL:D2TK21" FT /protein_id="CBG87151.1" FT /translation="MRELHVQEINEVSGAGLFSSLGAAVLGGVMGITSGLYKGGVGGGN FT TGGIVGAGIIAALVGMCVGGIVYGVQGALYGLVNDWDTTLQVFNNYSEQFFDFSQNVPK FT " FT misc_feature complement(join(403965..404033,404076..404141)) FT /locus_tag="ROD_03691" FT /note="2 probable transmembrane helices predicted for FT ROD03691 by TMHMM2.0 at aa 12-33 and 48-70" FT misc_feature complement(404163..404174) FT /note="PS00228 Tubulin-beta mRNA autoregulation signal." FT /inference="protein motif:Prosite:PS00228" FT CDS complement(404388..406520) FT /transl_table=11 FT /gene="mchF" FT /locus_tag="ROD_03701" FT /product="putative microcin secretion/processing FT ATP-binding protein" FT /EC_number="3.4.22.-" FT /db_xref="GOA:D2TK22" FT /db_xref="InterPro:IPR001140" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR005074" FT /db_xref="InterPro:IPR011527" FT /db_xref="InterPro:IPR017871" FT /db_xref="InterPro:IPR017940" FT /db_xref="UniProtKB/TrEMBL:D2TK22" FT /protein_id="CBG87152.1" FT /translation="MMNLLEKLDFSWRKRLPVIQQTQAAECGLTCTGMIANYYGYKIDM FT ITLRRRFSTSLKGATLADIMQVSQQLGMSTRALRLEIDELHKLSMPCILHWDMNHFVVL FT KEVTKKKIIIHDPSRGRREVALSEVSKSFTGIALELIPNADFVKKEEKESLSMLKLIGN FT VSGIGSAFFQVMILSIGLEVFGLLTPFYSQWVMDQVLVSADYDLLTLLGCAFITVVVLQ FT NILSAIRAWVTTWFSSMLSVQWSANVCSHLLGLPMAWFEERHVGDIVSRYGSITTIQNT FT LTSRFISSILDGVMAIVTLIVLFTYNVKLTFVVLVLVLVYILIRWISFRPFRQANEEQL FT IASARAQSQLLESIRGVQAVKLNNKQEMRVSTYANELVEATNKGIHIQRLSIGFNTLQG FT LISGVGRIVLIWMAALEVLEGNFSAGMLIAFTSFADQFTGRTTGLIDAIIEFWMLRLHG FT ERLADIVLTEKEGDMDSTIALPSSDTALPIEVKNLTFRYAATEPWIFQRCSLRIESGES FT VAIVGPSGQGKSTLAKLLLGLLKPEDGCIEINGQDIRKLGMSWYREHVSSVMQDDILFA FT GSIMDNISFFDSLMAPDRVEQAAKLAHIHEDIMAMPMGYNSLVGDMGSSLSGGQIQRVL FT LARALYRQPKILLLDEATSHLDIAREKGINDAIKKMDITRIIIAHRPETIRSADRIILV FT NGGTITELPKSALPKE" FT misc_feature complement(404430..404978) FT /gene="mchF" FT /locus_tag="ROD_03701" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 3.3e-58" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(404601..404645) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(404934..404957) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(405198..406010) FT /gene="mchF" FT /locus_tag="ROD_03701" FT /note="HMMPfam hit to PF00664, ABC transporter, FT transmembrane region, score 2.4e-28" FT /inference="protein motif:PFAM:PF00664" FT misc_feature complement(join(405279..405347,405534..405587, FT 405597..405665,405834..405902,405960..406028)) FT /gene="mchF" FT /locus_tag="ROD_03701" FT /note="5 probable transmembrane helices predicted for FT ROD03701 by TMHMM2.0 at aa 165-187, 207-229, 286-308, FT 312-329 and 392-414" FT misc_feature complement(406086..406466) FT /gene="mchF" FT /locus_tag="ROD_03701" FT /note="HMMPfam hit to PF03412, Peptidase C39, bacteriocin FT processing, score 1.1e-42" FT /inference="protein motif:PFAM:PF03412" FT CDS complement(406539..407852) FT /transl_table=11 FT /gene="mchE" FT /locus_tag="ROD_03711" FT /product="microcin secretion protein" FT /db_xref="GOA:D2TK23" FT /db_xref="InterPro:IPR003997" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:D2TK23" FT /protein_id="CBG87153.1" FT /translation="MPISLNSVAQHKLFLEKVMSNSLFRKEALEANKAKSIGSVALYCP FT PWRWVIISLAGLVTVATLLLVFFGSYTKRETMTGALVPVDGVIDIVAVSAGTIVELPIQ FT EGQSVKKGSTIATLSSEISTRYGQTRESIARQLSLQNDALEQELKNLDILSAETLRGDE FT NQKNFLEQQLKKLEGIYASRLRQVRLAEGQLKKLKLMRDEGYASNRQVEEQEVSLLEAQ FT SRAQDVARQQIDLQQQLTRVLQQMREHPINKIDKINDINRRLSELKQAMMENESRRSIV FT LNAPLNATIASVLVKQGQMVNAGQTVASLLPENAALQARMMVSSRAIGFIVPGQRVTLR FT YQAYPWQKFGQQYGVVSDVSRVSLSPQEVSAITGNSQVNEQHYIVKVKLDKQFIHAYGQ FT QVKLQPGSALEADFLIDKRRLYEWVLEPLYALRRSSTL" FT misc_feature complement(407499..407588) FT /gene="mchE" FT /locus_tag="ROD_03711" FT /note="HMMPfam hit to PF00364, Biotin/lipoyl attachment, FT score 0.00021" FT /inference="protein motif:PFAM:PF00364" FT misc_feature complement(407640..407708) FT /gene="mchE" FT /locus_tag="ROD_03711" FT /note="1 probable transmembrane helix predicted for FT ROD03711 by TMHMM2.0 at aa 49-71" FT CDS complement(407818..409143) FT /transl_table=11 FT /gene="mchD" FT /locus_tag="ROD_03721" FT /product="putative microcin secretion protein" FT /db_xref="GOA:D2TK24" FT /db_xref="InterPro:IPR003423" FT /db_xref="InterPro:IPR010130" FT /db_xref="UniProtKB/TrEMBL:D2TK24" FT /protein_id="CBG87154.1" FT /translation="MQFRELHNALLALLLFFISHDAASLTLQQAILAADSYDTGIRAAR FT ELNEAEQQKRLQGFSGLLPQINLTGGYSKQDQPKAAYAAGVTRHNYSINLSQPIFDIEK FT YATWRRAEAMADQGQINYMLMQQQLITDVSEAWFSVAYASQALKNAERTRNAFQQQLRQ FT ARRGLELGEQTRLEVDEALANYDNAAVEIIIAENDLNNARIRFTKITGLPGDTVPLNNM FT ECFVSPQLPDLKKVKIHSNQNNLNVQLARFTLDQSKADVIASTSNHLPVVTLQAAYGNN FT WSRGENENDFDFLFGTTSKTRNTNIGINVSIPIFAGGGHIAQSIEAAHRKEQSRELLLD FT AQRKALEEAERAWYAIIANDAKIRALQKSIASAKKRLESTTYGKQIGQRTVLDMLNAES FT DYYKSLKELAKARYDYITANIQLAKATGELDYAYLTKFSCST" FT misc_feature complement(407863..408447) FT /gene="mchD" FT /locus_tag="ROD_03721" FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 7.9e-34" FT /inference="protein motif:PFAM:PF02321" FT misc_feature complement(408511..409065) FT /gene="mchD" FT /locus_tag="ROD_03721" FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 1.7e-26" FT /inference="protein motif:PFAM:PF02321" FT sig_peptide complement(409072..409143) FT /gene="mchD" FT /locus_tag="ROD_03721" FT /note="Signal peptide predicted for ROD03721 by SignalP 2.0 FT HMM (Signal peptide probability 0.897) with cleavage site FT probability 0.631 between residues 24 and 25" FT CDS complement(409148..409804) FT /transl_table=11 FT /locus_tag="ROD_03731" FT /product="putative response regulator" FT /db_xref="GOA:D2TK25" FT /db_xref="InterPro:IPR000792" FT /db_xref="InterPro:IPR011990" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR016032" FT /db_xref="UniProtKB/TrEMBL:D2TK25" FT /protein_id="CBG87155.1" FT /translation="MYNKPKKLSVAIFYDFSLFQEEIAHYLEKETKGSNIEITFYHTMP FT ALFNAIENDRVNLLFTEFAFLSNNKTWLANSKKFNRLCIERNIKRAILVANQHPYLLRH FT IIDMKFEATISVDEGLAGIRRIIELIQYRENIPFISKNLMQIVDETDDRQCPLTPKEWE FT VLYLVAQGCSISDIAGRKNKSNSTVATQKQNAMKKLNLSSNSELIKYMYVTGMME" FT misc_feature complement(409172..409345) FT /locus_tag="ROD_03731" FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT protein, LuxR, score 3.2e-12" FT /inference="protein motif:PFAM:PF00196" FT CDS complement(410678..410809) FT /transl_table=11 FT /locus_tag="ROD_03741" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TK26" FT /protein_id="CBG87156.1" FT /translation="MLVNAQVISFVTSGLSPQQLSTFTGASSKFSLSNVIQAAANAS" FT CDS complement(410888..411373) FT /transl_table=11 FT /locus_tag="ROD_03751" FT /product="putative membrane protein" FT /db_xref="GOA:D2TK27" FT /db_xref="InterPro:IPR002711" FT /db_xref="InterPro:IPR003615" FT /db_xref="UniProtKB/TrEMBL:D2TK27" FT /protein_id="CBG87157.1" FT /translation="MEAIIFIAVVGWVLFIVMKMIAGRLYPSDPMEVQDKGDGGNSKDV FT WGNYYKADGHVRLFEQFQHEQQQLQREQQQRQQSAREATTFYDSSEWRRLRYQAFREYG FT NTCSVCGRGPGDGMVMHVDHIKPRSLYPHLALDLSNLQIMCNECNVSKSNKDEIKWR" FT misc_feature complement(410906..411061) FT /locus_tag="ROD_03751" FT /note="HMMPfam hit to PF01844, HNH endonuclease, score FT 1.7e-07" FT /inference="protein motif:PFAM:PF01844" FT misc_feature complement(411296..411364) FT /locus_tag="ROD_03751" FT /note="1 probable transmembrane helix predicted for FT ROD03751 by TMHMM2.0 at aa 4-26" FT CDS complement(411527..412489) FT /transl_table=11 FT /locus_tag="ROD_03761" FT /product="putative transcriptional regulator" FT /db_xref="GOA:D2TK28" FT /db_xref="InterPro:IPR007324" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TK28" FT /protein_id="CBG87158.1" FT /translation="MDKPSVSQEYELLTEIAVAYYCDEITQEEIANKFGFSRIKVGRLL FT KRAKEEGIVEISVRYHPVFSTQLEKQLKERFPISRALIALDHQDEEEQRRQVASLVSAH FT LNNVLKDNVVVAVGQGRNVASVAEFSGTIQGRDCRFICGIGGTHRPGDVINADHISRLL FT AKKFGGSSESLYAPAYVENIQLKELLLQNGTIKETLDRARKADIALVGIGDMNEESYMV FT KLGWFTPQEINDASLNQGVIGDIAGYDFFNARGEHVNTVMDNRVIGLSIDELRQIPCVI FT AIASENTKAMAIMGALRTGAIDIIATSARNIRTILSMSQ" FT misc_feature complement(411539..412312) FT /locus_tag="ROD_03761" FT /note="HMMPfam hit to PF04198, Putative sugar-binding FT region, score 2.8e-94" FT /inference="protein motif:PFAM:PF04198" FT misc_feature complement(412352..412417) FT /note="Predicted helix-turn-helix motif with score FT 1587.000, SD 4.59 at aa 25-46, sequence FT ITQEEIANKFGFSRIKVGRLLK" FT CDS complement(412689..414446) FT /transl_table=11 FT /locus_tag="ROD_03771" FT /product="putative dihydroxyacetone kinase" FT /db_xref="GOA:D2TK29" FT /db_xref="InterPro:IPR004006" FT /db_xref="InterPro:IPR004007" FT /db_xref="UniProtKB/TrEMBL:D2TK29" FT /protein_id="CBG87159.1" FT /translation="MTWIFNRPADFAKEMAAGFVNAHASLVRQVPGGVVRNTQSKPGSV FT AIVVGGGSGHYPAFAGLVGQGLAHGAAMGNLFASPSAQQICSVARAASNGGGVLLAFGN FT YAGDVLHFGLACERLRAEGIPCETIAVTDDISSATLAEKEKRRGVAGDLVVFKVAAAAA FT ERGDSLAEVLAIARRANSRTCSLGLAFGGCTLPGSDSPLFTVPDGMMGFGMGIHGEPGI FT NDIPVPSADRLAAMLTDKLLQEMPPEVAGAKGARAGVIVNGLGAVKYEELFVLWHYVEP FT RLREAGIVVADVQIGEFVTSFNMAGMSLTLVWFDEELESLWLAPACTPAFKRGSVIAHQ FT PLTAEQCEQIAAPTLPQGSEESRQAAETAMRILNAVAEKISASAGELGRIDAIAGDGDH FT GIGMERGVSAARRAAEAALQKGAGVGSLLQCAADAWADEAGGTSGAIWGVILNTLGTAL FT GNEKRPDAQDVARAVVQACSGVMHFGKAKPGDKTLVDVLHPFSDALQAAAGSASLAQAW FT QRAADVARQSAENTAQLVPKIGRARPLAERSLGTPDAGAVSLAMIITTAGECLKDSAPT FT AEAQEKVCL" FT misc_feature complement(412743..413270) FT /locus_tag="ROD_03771" FT /note="HMMPfam hit to PF02734, Dak phosphatase, score FT 4.6e-55" FT /inference="protein motif:PFAM:PF02734" FT misc_feature complement(413442..414401) FT /locus_tag="ROD_03771" FT /note="HMMPfam hit to PF02733, Dak kinase, score 3.2e-128" FT /inference="protein motif:PFAM:PF02733" FT misc_feature complement(413868..413900) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 414766..415233 FT /transl_table=11 FT /gene="rpiB" FT /locus_tag="ROD_03781" FT /product="ribose 5-phosphate isomerase B" FT /EC_number="5.3.1.6" FT /db_xref="GOA:D2TK30" FT /db_xref="InterPro:IPR003500" FT /db_xref="InterPro:IPR004785" FT /db_xref="UniProtKB/TrEMBL:D2TK30" FT /protein_id="CBG87160.1" FT /translation="MLKIAIGADDAATDLKNQVKAHLQKKGLDVVDFSHDVAGNEQIYP FT DIAFNLASAIKEGVFGRGILLCGTGIGMAIVANKVPGIRAAQCHDVYSASRARKSNNAQ FT IMTIGARVVGEELALMLVDAWLEAEFEAGRSGPKVQRIDYYETLTRSGQTA" FT misc_feature 414772..415194 FT /gene="rpiB" FT /locus_tag="ROD_03781" FT /note="HMMPfam hit to PF02502, Ribose/galactose isomerase, FT score 8.2e-75" FT /inference="protein motif:PFAM:PF02502" FT CDS 415434..416729 FT /transl_table=11 FT /locus_tag="ROD_03791" FT /product="Major Facilitator Superfamily transporter" FT /db_xref="GOA:D2TK31" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TK31" FT /protein_id="CBG87161.1" FT /translation="MNMMKNKSTKILALFCALSFLMYVDRVNLSASAALIKEEIGLDNT FT ELGIVFSAFAYTYLVFQIIGGWFCDRFGAKRTIIICGSIWVVATICTGFVGGFASLFFS FT RLLLGIGEGAALPSQARAISFWFKKEKRGFVQGLTHSFSRFGNAVTPSLVALLVLAHSW FT RFSFIALGVLTAIWLLMWIAWFRDTPHQFTQLSKEELAQYPQADPDVSEKVKEPTPWGA FT LLKRMGPTMGVYFCYGWTGWLFFTWLPTFFMSGRGMDIKSSALFTSGVFLSGVVGNTVG FT GVLSDYIYKRSGNVVAARRNVIIFSFLSALLLLIPVILSSSMTVITLCLAVAFFCLELT FT IGPIWAVPMDITPKHVGIASGLMNAGSAVAGIISPILFGVIIDRTGNWSLPFYGSVVLL FT MVGIILTFFMRPDIPLQEKRGRTDAHPQVSHP" FT sig_peptide 415434..415532 FT /locus_tag="ROD_03791" FT /note="Signal peptide predicted for ROD03791 by SignalP 2.0 FT HMM (Signal peptide probability 0.938) with cleavage site FT probability 0.514 between residues 33 and 34" FT misc_feature join(415467..415535,415572..415640,415674..415742, FT 415920..415988,416124..416192,416220..416288, FT 416325..416393,416406..416474,416511..416579, FT 416607..416660) FT /locus_tag="ROD_03791" FT /note="10 probable transmembrane helices predicted for FT ROD03791 by TMHMM2.0 at aa 12-34, 47-69, 81-103, 163-185, FT 231-253, 263-285, 298-320, 325-347, 360-382 and 392-409" FT misc_feature 415476..416582 FT /locus_tag="ROD_03791" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 6.5e-63" FT /inference="protein motif:PFAM:PF07690" FT CDS 416752..417798 FT /transl_table=11 FT /locus_tag="ROD_03801" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TK32" FT /db_xref="InterPro:IPR005255" FT /db_xref="UniProtKB/TrEMBL:D2TK32" FT /protein_id="CBG87162.1" FT /translation="MSLPVIAMVLGDPAGVGPELVAKVLSDRALLQKAHFILIADRDEM FT KKGMAIAGREFPWRDVAAPTTADLTVGEALLIHHRCSHPAPFEYGKATAQSGVYILETL FT KKALELTQSGLAQAICFAPLNKQAMHMGGLAFRDELHWFAHQLDWTPFCCEVNVVDNVW FT AGRATSHIPFRDIVSNLSIDGVLDTITLMHNTLRQAGFATPRIAVQALNPHGGENGLFG FT DEEQTIIRPAMEKARQQGINVFGPYPADTTWKAMQTEKLDAVVSMYHDQFATALKMLGF FT ERGVTVQGGLPVPITTANHGTAYNLYGQNAATPSAFEQAVLLAIRMAKGSQQTRQIAPA FT PVAEEEKQ" FT misc_feature 416827..417726 FT /locus_tag="ROD_03801" FT /note="HMMPfam hit to PF04166, Pyridoxal phosphate (active FT vitamin B6) biosynthesis PdxA, score 5.3e-120" FT /inference="protein motif:PFAM:PF04166" FT CDS 417795..418628 FT /transl_table=11 FT /locus_tag="ROD_03811" FT /product="putative hydroxypyruvate isomerase" FT /db_xref="GOA:D2TK33" FT /db_xref="InterPro:IPR012307" FT /db_xref="InterPro:IPR013022" FT /db_xref="UniProtKB/TrEMBL:D2TK33" FT /protein_id="CBG87163.1" FT /translation="MSLRIGVNTAMFDGLDPDIAFATIAEAGFHSVELAYNQGYVGGLS FT PELFSARHADRILALLEKHRLTTHTLGATMNLAADDAIADFSQRIRFAEMIGARRLTVC FT LGRRADRELIIERLKVLADVALAHQCVICIENGGDPGFDLFALAEDGFAILEAVNSPAL FT AFNIDAGNMVSLCPQVDAIAQALAMMPAAAHCHIKDVSVRQGEFFFPAIGEGDLNYPPL FT LDALAEQGIPCSFEIPLRMHRRGDSYPERASRPVPPATSLAVLQRSRQTLLPWLE" FT misc_feature 417855..418445 FT /locus_tag="ROD_03811" FT /note="HMMPfam hit to PF01261, Xylose isomerase-type TIM FT barrel, score 1.4e-27" FT /inference="protein motif:PFAM:PF01261" FT CDS 418847..419896 FT /transl_table=11 FT /locus_tag="ROD_03821" FT /product="putative zinc-binding dehydrogenase" FT /db_xref="GOA:D2TK34" FT /db_xref="InterPro:IPR002085" FT /db_xref="InterPro:IPR002328" FT /db_xref="InterPro:IPR006140" FT /db_xref="InterPro:IPR011032" FT /db_xref="InterPro:IPR013149" FT /db_xref="InterPro:IPR013154" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TK34" FT /protein_id="CBG87164.1" FT /translation="MKVKAIGAYSATQPLESMDISRREPGPHDVQIEIAYCGVCHSDIH FT QVRSEWAGTLYPCVPGHEIVGRVTATGEQVEKYQTGDLVGVGCIVDSCKHCGDCDDGLE FT NYCDHMVGTYNGPTPDAPGHTLGGYSQQIVVDERYVLRITHPESQLAAVAPLLCAGITT FT YSPLRHWQVGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSESKRDAAKALGADEV FT VVSRNAEEMKAHLKSFDFILNTVAAPHNLDAFTTLLKRDGTMTLVGAPATPHDSPEVFN FT LIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEMIRAEQINDAYERMLKGDVHYRF FT VIDNATLTA" FT misc_feature 418925..419275 FT /locus_tag="ROD_03821" FT /note="HMMPfam hit to PF08240, Alcohol dehydrogenase FT GroES-like, score 1.5e-34" FT /inference="protein motif:PFAM:PF08240" FT misc_feature 418955..418972 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT /inference="protein motif:Prosite:PS00190" FT misc_feature 419027..419071 FT /note="PS00059 Zinc-containing alcohol dehydrogenases FT signature." FT /inference="protein motif:Prosite:PS00059" FT misc_feature 419366..419773 FT /locus_tag="ROD_03821" FT /note="HMMPfam hit to PF00107, Alcohol dehydrogenase, FT zinc-binding, score 5.2e-38" FT /inference="protein motif:PFAM:PF00107" FT misc_feature 419378..419464 FT /note="PS00065 D-isomer specific 2-hydroxyacid FT dehydrogenases NAD-binding signature." FT /inference="protein motif:Prosite:PS00065" FT CDS complement(419908..420477) FT /transl_table=11 FT /locus_tag="ROD_03831" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TK35" FT /protein_id="CBG87165.1" FT /translation="MNPPVVIILAAGKGERFLASGATTHKLDTPLGAYSVLEHVIRAVA FT EAGLRGHLVRPAGGTRGMGESVSLGVRATADADGWLILPGDLPLIRPASLRAVAQALCQ FT KSVVLPRYRQLSGHPVGFSRRWFPLLAALDGDVGARTVVKAARACGEVLDLALADPGVT FT HDIDTVADLLAASRLHDAAAPCRMRR" FT CDS complement(420474..421409) FT /transl_table=11 FT /locus_tag="ROD_03841" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR003777" FT /db_xref="UniProtKB/TrEMBL:D2TK36" FT /protein_id="CBG87166.1" FT /translation="MQQSLTGLTAEAVRDPQVAFLTDDGRDVLRFAREALAAGMEAALV FT TLVEITGGAARPLGAQMAVREDGHYCGFVSGGCVESAVAFEALEVIRSGQDRTVRYGAG FT SPWFDIVLPCGGGITLRIHKLRSAQPLLAVLKALEQRQSASLRYNSATQTLHMQPGYAR FT ARWRDDEFVQGFRPCVRVMIFGRSVEAQSTALLAEAAGYDVQLCADASLPQMPDADTAV FT ILLWHDLDRELPVLQAALAAKPFYIGALGSCRTHRKRVAKLVEQGWREADIARIKAPVG FT IFPQARDARSLALSVLADVAAARLQGEESG" FT misc_feature complement(421098..421313) FT /locus_tag="ROD_03841" FT /note="HMMPfam hit to PF02625, XdhC- CoxI, score 2e-26" FT /inference="protein motif:PFAM:PF02625" FT misc_feature complement(421176..421208) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(421419..423617) FT /transl_table=11 FT /locus_tag="ROD_03851" FT /product="putative xanthine dehydrogenase, FT molybdenum-binding subunit" FT /EC_number="1.17.1.4" FT /db_xref="GOA:D2TK37" FT /db_xref="InterPro:IPR000674" FT /db_xref="InterPro:IPR008274" FT /db_xref="UniProtKB/TrEMBL:D2TK37" FT /protein_id="CBG87167.1" FT /translation="MKFEEPAGTNPIDQMKVVGRPHDRIDGPRKTTGTAPYAYEWHDIA FT PDATYGYIVDSAIAKGRIVSMNIQPALNAPGVLAVVTAENAGPLGKGERNAATLLGGPE FT IEHYQQAVALVVAETFEQARAAASLVQVEYQREPGAYDLAQEKPSVTTPPEDQPDQNVG FT DFASAWAAAEVKLDAIYTTPDQSHMAMEPHASMAIQEGDKLTLWTSNQMINWARTDLAA FT TLKMPEENIRVISPYIGGGFGGKLFLRSDALLSALGARAVNRPVKVMVPRPVIPNNTTH FT RPATIQHIRIGTDREGRITAIAHDSWSGNLPGGSPETAVNQSKFLYAGANRHTGLRLAH FT LDLPEGNSMRAPGETPGLMALEIAIDEMAIRAGVDPVEFRILNDTQVDPANPERPFSRR FT QLIECLRTGAERFGWQHRHATPGQVRDGNWLIGMGMAAGYRDNVVVPSGARVQFHANGT FT LTVETDMTDIGTGSYTIIAQTAAEMLGLPLEKVEVRLGDSAFPVSAGSGGQWGANTSTA FT GVYAACVKLRETIAATLGFDPATATFAEEKIHADGRSVALREAAANGTLSAEDTIEFGD FT LAKKYQQSTFAGHFVEVGVDVATGEIRVRRMLAVCAAGRILNPKTARSQVIGAMTMGIG FT AALMEELAVDTRQGYFVNHDLAAYEVPVHADIPQQEVIFLEDTDPISSPMKAKGVGELG FT LCGVSAAIANAVYNATGVRVRDYPIRLDKLLSALPDAV" FT misc_feature complement(421614..423188) FT /locus_tag="ROD_03851" FT /note="HMMPfam hit to PF02738, Aldehyde oxidase and FT xanthine dehydrogenase, molybdopterin binding, score FT 2.9e-153" FT /inference="protein motif:PFAM:PF02738" FT misc_feature complement(423204..423518) FT /locus_tag="ROD_03851" FT /note="HMMPfam hit to PF01315, Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead, score 1.3e-31" FT /inference="protein motif:PFAM:PF01315" FT CDS complement(423621..424553) FT /transl_table=11 FT /locus_tag="ROD_03861" FT /product="putative xanthine dehydrogenase, FAD-binding FT subunit" FT /EC_number="1.17.1.4" FT /db_xref="GOA:D2TK38" FT /db_xref="InterPro:IPR002346" FT /db_xref="InterPro:IPR005107" FT /db_xref="InterPro:IPR016166" FT /db_xref="InterPro:IPR016167" FT /db_xref="InterPro:IPR016169" FT /db_xref="UniProtKB/TrEMBL:D2TK38" FT /protein_id="CBG87168.1" FT /translation="MKAFSYEKVNTPAEAALGAQRHANAKFIAGGTNLLDLMKLEIETP FT EHLIDVNGLGLDQIEATADGGVRIGALVRNTDLAADERIRRDYAVLSRALLAGASGQLR FT NQATTAGNLLQRTRCPYFYDTHQPCNKRSPGSGCAARDGYSRQLAIVGVSDACIATHPS FT RLLDAVVETVNPDGSERRIPLADFYRVPGDTPHLETVLQAGELIVAVTLPPPPGGTHIY FT RKVRDRASYAFALVSVAAIMQPDGTGRVAFGGVAHKPWRLTEADAQLPHGAQAVCNVLF FT ADAHITADNAYKLELAKRTLASVLSEARR" FT misc_feature complement(423909..424550) FT /locus_tag="ROD_03861" FT /note="HMMPfam hit to PF00941, Molybdopterin dehydrogenase, FT FAD-binding, score 1.6e-91" FT /inference="protein motif:PFAM:PF00941" FT CDS complement(424550..425122) FT /transl_table=11 FT /locus_tag="ROD_03871" FT /product="putative xanthine dehydrogenase FT iron-sulfur-binding subunit" FT /db_xref="GOA:D2TK39" FT /db_xref="InterPro:IPR001041" FT /db_xref="InterPro:IPR002888" FT /db_xref="InterPro:IPR006058" FT /db_xref="InterPro:IPR012675" FT /db_xref="UniProtKB/TrEMBL:D2TK39" FT /protein_id="CBG87169.1" FT /translation="MSNQGNTQGENHLPVTPPPETLSLTLNVNGEPQQLTVDTRTTLLD FT ALREHLHLTGSKKGCDHGQCGACTVLLNGRRINACLTLAVMHEGAEITTIEGLGTPDDL FT HPMQAAFVRHDGYQCGYCTPGQICSSVAMLKEIEEGIPSHVTLDLVSPPEMSADEIRER FT MSGNICRCGAYSNILAAIEDAAGELKS" FT misc_feature complement(424574..424843) FT /locus_tag="ROD_03871" FT /note="HMMPfam hit to PF01799, [2Fe-2S]-binding, score FT 9.9e-44" FT /inference="protein motif:PFAM:PF01799" FT misc_feature complement(424865..425047) FT /locus_tag="ROD_03871" FT /note="HMMPfam hit to PF00111, Ferredoxin, score 3.9e-13" FT /inference="protein motif:PFAM:PF00111" FT misc_feature complement(424919..424945) FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT /inference="protein motif:Prosite:PS00197" FT CDS 425495..427048 FT /transl_table=11 FT /locus_tag="ROD_03881" FT /product="putative peptide transport protein" FT /db_xref="GOA:D2TK40" FT /db_xref="InterPro:IPR000109" FT /db_xref="InterPro:IPR005279" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR018456" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TK40" FT /protein_id="CBG87170.1" FT /translation="MHSSVNKNESRTFFGHPYPLGSLFFTEMWERFSFYGIRPLLILFM FT AATVYDGGMGLARENASAIVGIFAGTMYLAALPGGWLADNWLGQQRAVWYGSILIALGH FT LSIALSAWMGDNLFFIGLMFIVLGSGLFKTCISVMVGTLYKKGDARRDGGFSLFYMGIN FT IGSFIAPLISGWLIKSHGWHWGFGIGGIGMLVALIIFRLFAVPAMKRYDSEVGLDSTWN FT SPVAKKNGVGAWLLALAVGITILVTLIAQGVIVINPVAVASMLVYVIAASVALYFIYLF FT AFAGLTRKERARLLVCFILLVSAAFFWSAFEQKPTSFNLFANDYTNRMVGDFEIPAVWF FT QSINALFIILLAPVFSWAWPALARKNVRPGSISKFVIGILCAAAGFGLMMLAAQNVLSN FT GGAGVSPFWLVGSILMLTLGELCLSPIGLATMTLLAPERMRGQMMGLWFCASALGNLAA FT GLIGGHVKADQLDMLPDLFARCSVALLICAAVLMVLIVPVRRMLENAQQKTEQKPITHA FT " FT misc_feature join(425594..425662,425675..425743,425768..425836, FT 425849..425917,425954..426022,426035..426103, FT 426191..426259,426287..426355,426374..426427, FT 426503..426571,426605..426673,426716..426784, FT 426821..426889,426920..426988) FT /locus_tag="ROD_03881" FT /note="14 probable transmembrane helices predicted for FT ROD03881 by TMHMM2.0 at aa 34-56, 61-83, 92-114, 119-141, FT 154-176, 181-203, 233-255, 265-287, 294-311, 337-359, FT 371-393, 408-430, 443-465 and 476-498" FT misc_feature 425729..425803 FT /note="PS01022 PTR2 family proton/oligopeptide symporters FT signature 1." FT /inference="protein motif:Prosite:PS01022" FT misc_feature 425762..426859 FT /locus_tag="ROD_03881" FT /note="HMMPfam hit to PF00854, TGF-beta receptor, type I/II FT extracellular region, score 4.3e-39" FT /inference="protein motif:PFAM:PF00854" FT misc_feature 425957..425995 FT /note="PS01023 PTR2 family proton/oligopeptide symporters FT signature 2." FT /inference="protein motif:Prosite:PS01023" FT CDS 427452..430523 FT /transl_table=11 FT /locus_tag="ROD_03891" FT /product="putative adhesin autotransporter" FT /db_xref="GOA:D2TK41" FT /db_xref="InterPro:IPR004899" FT /db_xref="InterPro:IPR005546" FT /db_xref="InterPro:IPR006315" FT /db_xref="InterPro:IPR011050" FT /db_xref="InterPro:IPR012332" FT /db_xref="UniProtKB/TrEMBL:D2TK41" FT /protein_id="CBG87171.1" FT /translation="MSRQVSEYFLIMKPVTSFYLFKPSKIALLLSSILSAASLPVYAEG FT ERIVIDSRTPVAERTLTIADGAAMEYIGVSASDASVTVNGKIDMVSPEGNTGASVYVSS FT GLLDFGKGSTIGYQTLSSSVADALRVYGGTFKAEDLSITQTGVPTIGISADNSGNVVLT FT GDTRIDMTITDPVTVSSSIMASAITSYRDSTIALDNLTVNYADSKTPGDVGTTTVEALE FT FRGLSTKVTGDINVDLQSTSAIYLEGMNVGSNGDFEGDTNIRINTATASNGVKGLVLED FT HYVTTARPGRENKINFNDVNIDVTNNEDAYTFALNTGLSFLGEVSDLTMNNLNIKVAAP FT GDTSVIGALFHGSEESSVRINNVDISLTGGESTNMYGLQGVSAEDIVLNTLNVQTQGGD FT RVELLRSTNARILGDVTLGSQQGLASAKGNLLAIYGSVDISNNNKFMAWGDIHSESGHV FT VNIKTGDNSYLYGSTKRVSDGVIDLAFNGSSSRWDMTNSSSVTNLTLNDATLNFAPAMA FT SSRNLTRETTPFKTLTVGGDYAGNNGTIIMRTQLGDDSSQTDRMIVNGNTSGTTNVTVV FT NAGGAGGLTTDGIELISVAGNSDGEFRQSGRIVAGAYDYTLARGEGQNEKNWYLTSGLT FT PEPQPEPVDPVDPVDPVDPVDPVDPVDPSEPQPDPASPVDPTEPVIPQAPTKPEPQKPS FT PAPRENAVRPEAGLYGMNLQAANTMFNTRLHDRLGETHYIDALTGEQAVTSLWLRNVGG FT HTRQQDGSGQLDMQANRYVMQLGGDIAQWSSDNTDRFHLGLMAGYANQKARAENQRNGN FT RADSRISGYSVGLYGTWLQDNATQEGAYVDTWAQYSWFDNTVSGRGVESEEYDSKGFTA FT SVESGYTWKLADINERNALYIQPKAQVTWMGVKADEHREANGTRVTGHGDGNVQTRVGV FT RLFGKGHNRLDDGKGRTFQPFVEANWIHNSKEFGTALNGENVTLDGTRNIGELKAGVEG FT QLTKNVSLWGNVGQQVGDKGYSDTSAMIGIKASF" FT sig_peptide 427452..427580 FT /locus_tag="ROD_03891" FT /note="Signal peptide predicted for ROD03891 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 43 and 44" FT misc_feature 428949..429347 FT /locus_tag="ROD_03891" FT /note="HMMPfam hit to PF03212, Pertactin, score 7.2e-07" FT /inference="protein motif:PFAM:PF03212" FT misc_feature 429669..430493 FT /locus_tag="ROD_03891" FT /note="HMMPfam hit to PF03797, Autotransporter beta-domain, FT score 2e-42" FT /inference="protein motif:PFAM:PF03797" FT CDS 431335..432735 FT /transl_table=11 FT /locus_tag="ROD_03901" FT /product="putative terminal oxidase subunit I" FT /db_xref="GOA:D2TK42" FT /db_xref="InterPro:IPR002585" FT /db_xref="UniProtKB/TrEMBL:D2TK42" FT /protein_id="CBG87172.1" FT /translation="MDIDAFLLARIQFAFTVSFHIIFPAITIGLASYLAVLEGLWLKTN FT NPVWRSLYQFWVKVFAVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVLTA FT FFLEAGFLGVMLFGWNKVGPGLHFLSTCMVALGTLMSTFWILASNSWMHTPQGFEVVNG FT QVVPVDWFAVIFNPSFPYRLLHMSVAAFLSSAMFVGASAAWHLLKGNDTPAIRKMFSMA FT LWMAMLVAPVQALIGDMHGLNTLEHQPVKIAAIEGHWENRPDEPTPLTLVGWPDMEAEE FT TRYALEIPALGSLILTHSLDKQVPALKDYPKDERPNSTIVFWSFRLMVGMGVLMILLGL FT ASLWLRYKNRLYQSRPFMHFALWMGPSGLIAILAGWVTTEVGRQPWVVYGLQRTRDAVS FT AHSTLQMSISLLAFFVVYSLVFGVGYLYMIRLIQKGPQPFEPPTSETDGRPARPISAVG FT EPLDQEKR" FT misc_feature 431356..432663 FT /locus_tag="ROD_03901" FT /note="HMMPfam hit to PF01654, Cytochrome bd ubiquinol FT oxidase, subunit I, score 1.1e-238" FT /inference="protein motif:PFAM:PF01654" FT misc_feature join(431392..431460,431497..431565,431623..431691, FT 431710..431778,431887..431955,431992..432045, FT 432298..432366,432403..432471,432553..432621) FT /locus_tag="ROD_03901" FT /note="9 probable transmembrane helices predicted for FT ROD03901 by TMHMM2.0 at aa 20-42, 55-77, 97-119, 126-148, FT 185-207, 220-237, 322-344, 357-379 and 407-429" FT CDS 432735..433745 FT /transl_table=11 FT /locus_tag="ROD_03911" FT /product="putative terminal oxidase subunit II" FT /db_xref="GOA:D2TK43" FT /db_xref="InterPro:IPR003317" FT /db_xref="UniProtKB/TrEMBL:D2TK43" FT /protein_id="CBG87173.1" FT /translation="MTLDLSVIWFAIIVFATLMYIVMDGFDLGIGILFPFIRDKHDRDV FT MVNSVAPVWDGNETWLVMGGAGLFGAFPLAYAVIADALTIPLLLMLLGLIFRGVAFEFR FT FKATESHRDFWDKSFIVGSILATFCQGVVVGAVVSGFQVSGRAFSGTQLDWLTPFNLFC FT GLGLVITYALLGATWLIIKSEDPLQSRMRQLSRPLLIVLLLVMAVVSLWTPLTQSAIAE FT RWFSLPNLYYFLPVPLLVIVFSLWLWRSLQRPDTHTRAFVLTLGLIFLGFSGLGISIWP FT HIIPPDITLHEAAAPPQSQGFMLVGALIIIPIILAYTFWSYYVFRGKVRHGEGYH" FT misc_feature 432741..433724 FT /locus_tag="ROD_03911" FT /note="HMMPfam hit to PF02322, Cytochrome bd ubiquinol FT oxidase, subunit II, score 7.1e-148" FT /inference="protein motif:PFAM:PF02322" FT misc_feature join(432753..432812,432954..433022,433083..433151, FT 433209..433277,433314..433382,433425..433478, FT 433515..433583,433641..433709) FT /locus_tag="ROD_03911" FT /note="8 probable transmembrane helices predicted for FT ROD03911 by TMHMM2.0 at aa 7-26, 74-96, 117-139, 159-181, FT 194-216, 231-248, 261-283 and 303-325" FT CDS complement(433930..436584) FT /transl_table=11 FT /locus_tag="ROD_03921" FT /product="putative adhesin autotransporter" FT /db_xref="GOA:D2TK44" FT /db_xref="InterPro:IPR004899" FT /db_xref="InterPro:IPR005546" FT /db_xref="InterPro:IPR006315" FT /db_xref="InterPro:IPR011050" FT /db_xref="InterPro:IPR012332" FT /db_xref="InterPro:IPR013425" FT /db_xref="UniProtKB/TrEMBL:D2TK44" FT /protein_id="CBG87174.1" FT /translation="MKSQLISFRSSLLAIAISAALSAGAAANNGNLLSFSPPASITDTV FT TINEDVTLSEHENTDAKWNEFSSLRVGYNGNGTLLIDNRSITTRAGIIGNAASGNVTLV FT NGASWTLKGLNLVLGTDNGSGKLFVNSGSHISGIDELRIGEHAAGAEGEVIIEGTGSSV FT SSNWSVVGDQGHGKLTITNGGALYLNEHMNIGYVGVTELSNYKGYGETLVAGENALLDV FT TQGIYLGGFATTKNDATGILTVSNGATINSGNLIWLAVGAGSTGILNVGAAQGETEQAA FT GTINAPRIHLGNTDGVSTAVLNFNHSSDDFLLGANITGTGEVNHIGSGTTTLTGASNYR FT GTTHVANGTLRAGVNNTLSANSDYQVDSGAHLDLNGYSQTINSLSLAGTATLSGDTQDG FT SPFTPTTLTINGDYSGDNALLAMRTVLDDDASATDKLVVKGDTAGVTRVSVANAGGGGA FT QTVEGIRIIDVEGASNGSFVKEGRIVAGAYDYDIKKSDNQNWYLSSLKTVVPPTEPEQP FT HGPVKPEEPLPPEEPVQPEPLQPEPLPPEEPDTPLPPSADDTHQYRPETGSYLANTLVA FT NTLFTTRLHDRLGETQYTDMLTGEKKVTSLWMRHTGGHNRFKGGSGQVSTQSNRYVMQL FT GGDIAQWSLDGLDRWHLGLMAGYANGKSRSRASLTGYTSRGEISGYSVGVYGTWYANDA FT DKSGAYVDSWMLYNWFKNTVSGEALASEKYDSDGITASVETGYTFSLGASSDGRTRYWL FT QPKVQLTWMDVKADNHTEKNGTRVVDDTHGNLQTRLGVKAYMQGHNAIDDGKQRTFQPF FT VEANWIYNSHNYSVKMDDIHEEVKGLRNVGELKVGVEGQINPRLQLWGNVAQQIGDEGY FT SDTLGMLGVKYTF" FT misc_feature complement(433960..434787) FT /locus_tag="ROD_03921" FT /note="HMMPfam hit to PF03797, Autotransporter beta-domain, FT score 2e-41" FT /inference="protein motif:PFAM:PF03797" FT misc_feature complement(434596..434619) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(435073..435444) FT /locus_tag="ROD_03921" FT /note="HMMPfam hit to PF03212, Pertactin, score 2.1e-06" FT /inference="protein motif:PFAM:PF03212" FT sig_peptide complement(436504..436584) FT /locus_tag="ROD_03921" FT /note="Signal peptide predicted for ROD03921 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.628 between residues 27 and 28" FT misc_feature complement(436504..436572) FT /locus_tag="ROD_03921" FT /note="1 probable transmembrane helix predicted for FT ROD03921 by TMHMM2.0 at aa 5-27" FT CDS complement(437090..438757) FT /transl_table=11 FT /gene="prpR" FT /locus_tag="ROD_03931" FT /product="propionate catabolism operon regulatory protein" FT /db_xref="GOA:D2TK45" FT /db_xref="InterPro:IPR002078" FT /db_xref="InterPro:IPR002197" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR010524" FT /db_xref="InterPro:IPR012704" FT /db_xref="UniProtKB/TrEMBL:D2TK45" FT /protein_id="CBG87175.1" FT /translation="MAFHCNIFETRLNPLFSLFTCGDVMAASQLPPRGSDDKPVIWTVS FT VTRLFDLFRDISLEFDHLATITPIQLGFEKAVTYIRKKLATERCDAIIAAGSNGAYLKS FT RLSIPVILIKPSGFDVLHALAKAGKLTASIGVITYQETLPALVAFQKTFGLRLEQRSYV FT TEEDARGQINELKANGIEAVVGAGLITGLAEEAGMKGIFIYSAASVRQGFIDALDISRL FT TQRRHGAFAPTQALRTRYGLGDIAGQSAQMEQIRHTIMLYARSRAAVLIQGETGTGKEL FT AAQAIHRECAPRSQPRSDQTSPPFVAVNCGAITESLLEAELFGYEEGAFTGSRRGGRAG FT LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHHPVAVDVRVISATHCNLE FT EAVSQGQFRRDLFYRLSVLRLNLPALRERPGDIASLAEGYLKQSLALLNVPFTESVRLG FT LAQNISLLLRYRWPGNIRELRNMMERLALFLSVEPMPPLDADLLRQLLPELAAVETAPA FT LASSATPQEVLAQFNGDKRAAARYLGISRTTFWRRLKQ" FT misc_feature complement(437093..437185) FT /gene="prpR" FT /locus_tag="ROD_03931" FT /note="HMMPfam hit to PF02954, Helix-turn-helix, Fis-type, FT score 1.6e-08" FT /inference="protein motif:PFAM:PF02954" FT misc_feature complement(437096..437161) FT /note="Predicted helix-turn-helix motif with score FT 1370.000, SD 3.85 at aa 533-554, sequence FT GDKRAAARYLGISRTTFWRRLK" FT misc_feature complement(437318..437347) FT /note="PS00688 Sigma-54 interaction domain C-terminal part FT signature." FT /inference="protein motif:Prosite:PS00688" FT misc_feature complement(437321..438025) FT /gene="prpR" FT /locus_tag="ROD_03931" FT /note="HMMPfam hit to PF00158, RNA polymerase sigma factor FT 54, interaction, score 1.3e-126" FT /inference="protein motif:PFAM:PF00158" FT misc_feature complement(437570..437587) FT /note="PS00134 Serine proteases, trypsin family, histidine FT active site." FT /inference="protein motif:Prosite:PS00134" FT misc_feature complement(437693..437740) FT /note="PS00676 Sigma-54 interaction domain ATP-binding FT region B signature." FT /inference="protein motif:Prosite:PS00676" FT misc_feature complement(438071..438595) FT /gene="prpR" FT /locus_tag="ROD_03931" FT /note="HMMPfam hit to PF06506, Propionate catabolism FT activator, N-terminal, score 4e-92" FT /inference="protein motif:PFAM:PF06506" FT CDS 438932..439816 FT /transl_table=11 FT /gene="prpB" FT /locus_tag="ROD_03941" FT /product="methylisocitrate lyase" FT /EC_number="4.1.3.30" FT /db_xref="GOA:D2TK46" FT /db_xref="InterPro:IPR000918" FT /db_xref="InterPro:IPR012695" FT /db_xref="InterPro:IPR015813" FT /db_xref="InterPro:IPR018523" FT /db_xref="UniProtKB/TrEMBL:D2TK46" FT /protein_id="CBG87176.1" FT /translation="MSLDSPGQAFRAALSKENPLQIVGTINANHALLAQRAGYQAIYLS FT GGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCPLPLPLLVDADIGFGASAFNVARTVR FT SMIKAGAAALHIEDQIGAKRCGHRPNKAIVSKEEMVDRIRAAVDARTDPHFVIMARTDA FT LAVEGLEAALDRAQAYVEAGADMLFPEAITELAMYRQFADAVNVPILANITEFGATPLF FT TTDELRSAGVAMALYPLSAFRAMNRAAERVYNVLREEGTQKSVIDMMQTRNELYESINY FT YQYEERLDALYKK" FT misc_feature 439175..439420 FT /gene="prpB" FT /locus_tag="ROD_03941" FT /note="HMMPfam hit to PF00463, Isocitrate lyase and FT phosphorylmutase, score 2.7e-08" FT /inference="protein motif:PFAM:PF00463" FT CDS 439899..441068 FT /transl_table=11 FT /gene="prpC" FT /locus_tag="ROD_03951" FT /product="2-methylcitrate synthase" FT /EC_number="2.3.3.5" FT /db_xref="GOA:D2TK47" FT /db_xref="InterPro:IPR002020" FT /db_xref="InterPro:IPR011278" FT /db_xref="InterPro:IPR016141" FT /db_xref="InterPro:IPR016142" FT /db_xref="InterPro:IPR016143" FT /db_xref="InterPro:IPR019810" FT /db_xref="InterPro:IPR024176" FT /db_xref="UniProtKB/TrEMBL:D2TK47" FT /protein_id="CBG87177.1" FT /translation="MTDTTILQNNAHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHYR FT GYDILDLAQHCEFEEVAYLLIHGKLPTRDELQAYKVKLKALRGLPANVRTVLEALPAAS FT HPMDVIRTGVSALGCTLPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERIQPE FT TDDDSIGGHFLHLLHGEKPSQSWEKAMHVSLVLYAEHEFNASTFTSRVIAGTGSDVYSA FT IIGAIGALRGPKHGGANEVSLEIQQRYETPDEAEADIRRRVENKEVVIGFGHPVYTLAD FT PRHQVIKRVAKQLSEEGGSLKMYNIADRLETVMWESKKMFPNLDWFSAVSYNMMGVPTG FT MFTPLFVIARVTGWAAHIIEQRQDNKIIRPSANYTGPEDRPFVSLDERR" FT misc_feature 439962..441008 FT /gene="prpC" FT /locus_tag="ROD_03951" FT /note="HMMPfam hit to PF00285, Citrate synthase, score FT 3.5e-98" FT /inference="protein motif:PFAM:PF00285" FT misc_feature 439989..440012 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 440709..440747 FT /note="PS00480 Citrate synthase signature." FT /inference="protein motif:Prosite:PS00480" FT CDS 441105..442556 FT /transl_table=11 FT /gene="prpD" FT /locus_tag="ROD_03961" FT /product="2-methylcitrate dehydratase" FT /EC_number="4.2.1.79" FT /db_xref="GOA:D2TK48" FT /db_xref="InterPro:IPR005656" FT /db_xref="InterPro:IPR012705" FT /db_xref="UniProtKB/TrEMBL:D2TK48" FT /protein_id="CBG87178.1" FT /translation="MSVQELNIRPPFDREIVDIVDYVLNYDITSTVAYDTAHYCLLDTL FT GCGLEALEYPACKKLMGPIVPGTVVPHGARVPGTQFQLDPVQAAFNIGAMIRWLDFNDT FT WLAAEWGHPSDNLGGILATADWLSRNAVAAGKAPLTMKQVLTGMIKAHEIQGCIALENA FT FNRVGLDHVLLVKVASTAVVAEMLGLERDEILNAVSLAWVDGQSLRTYRHAPNTGTRKS FT WAAGDATSRAVRLALMAKTGEMGYPSALTAKTWGFYDVSFKGETFRFQRPYGSYVMENV FT LFKISFPAEFHSQTAVEAAMTLYQQMQAAGKSAADIEKVTIRTHEACIRIIDKKGPLNN FT PADRDHCIQYMVAIPLLFGRLTAADYEDGVAQDKRIDALREKIVCVEDSQFTADYHDPE FT KRAIANAITVAFTDGTAFDEVVVDYPIGHARRRADGIPKLIEKFKINLARQFPIRQQQR FT ILDVSLDRTRLEQMPVNEYLDLYVI" FT misc_feature 441141..442529 FT /gene="prpD" FT /locus_tag="ROD_03961" FT /note="HMMPfam hit to PF03972, MmgE/PrpD, score 2.6e-240" FT /inference="protein motif:PFAM:PF03972" FT CDS 442575..444461 FT /transl_table=11 FT /gene="prpE" FT /locus_tag="ROD_03971" FT /product="propionate--coA ligase" FT /EC_number="6.2.1.17" FT /db_xref="GOA:D2TK49" FT /db_xref="InterPro:IPR000873" FT /db_xref="InterPro:IPR012694" FT /db_xref="InterPro:IPR020845" FT /db_xref="InterPro:IPR024597" FT /db_xref="UniProtKB/TrEMBL:D2TK49" FT /protein_id="CBG87179.1" FT /translation="MSFSEFYQRSITQPEAFWAEQARRIDWQKPFTRTLDHSRPPFARW FT FCGGTTNLCHNAVDRWLATQPEALALIAVSSETEEERTFTFRQLHDEVNVVASMLLSLG FT VRRGDRVLVYMPMIAEAHITLLACARIGAIHSVVFGGFASHSVAARIDDARPVLIVSAD FT AGVRGGKVLPYKKLLDDAIAQAQHQPKHVLLVDRGLAKMARIAGRDLDFASLRQQHCGA FT RTPVAWLESNETSCILYTSGTTGKPKGVQRDVGGYAVALATSMDTIFGGRAGGVFFCAS FT DIGWVVGHSYIVYAPLLAGMATIVYEGLPTYPDCGVWWKIVEKYRVNRMFSAPTAIRVL FT KKFPTAQIRNHDLSSLEVLYLAGEPLDEPTAAWVTQTLGVPVIDNYWQTESGWPIMALA FT RQLDDRPSRLGSPGVPMYGYNVQLLNEVTGEPCGVNEKGMVVIEGPLPPGCIQTIWGDD FT ERFVKTYWSLFSRQVYATFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISGY FT PNVAEVAVVGVKDALKGQVAVAFVIPKQSDSLEDREAAHSEEEAIMALVDSQIGHFGRP FT AHVWFVSQLPKTRSGKMLRRTIQAICEGRDPGDLTTLDDPAALQQIRRVIEE" FT misc_feature 442827..444149 FT /gene="prpE" FT /locus_tag="ROD_03971" FT /note="HMMPfam hit to PF00501, AMP-dependent synthetase and FT ligase, score 5e-111" FT /inference="protein motif:PFAM:PF00501" FT misc_feature 443283..443318 FT /note="PS00455 Putative AMP-binding domain signature." FT /inference="protein motif:Prosite:PS00455" FT CDS complement(444733..445986) FT /transl_table=11 FT /gene="lacY" FT /locus_tag="ROD_03981" FT /product="lactose permease" FT /db_xref="GOA:D2TK50" FT /db_xref="InterPro:IPR000576" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR018457" FT /db_xref="InterPro:IPR020846" FT /db_xref="InterPro:IPR022814" FT /db_xref="UniProtKB/TrEMBL:D2TK50" FT /protein_id="CBG87180.1" FT /translation="MHYLKNTNFWMFGFFFFFYFFIMGAYFPFFPIWLHDINHISKGDT FT GIIFACISLFSLLFQPVFGLLSDKLGLRKHLLWIITGMLVMFAPFFIYVFGPLLQFNIL FT LGSIVGGIYLGFIYNAGAPAIEAYIEKVSRRSNFEFGRARMFGCVGWALCASIVGIMFT FT INNEFVFWLGSGCAVILALLLFFAKTDASSTATVADAVGANHSAFSLKLALELFRQPKL FT WFLSLYVVGVSCTYDVFDQQFANFFTSFFTTGEQGTRVFGYVTTMGELLNASIMFFAPL FT IVNRIGGKNALLLAGTIMSVRIIGSSFASSALEVVILKTLHMFEVPFLIVGCFKYITSQ FT FEVRFSATIYLVCFCFFKQLAMIFMSVFAGNMYESIGFQGAYLVLGLIALGFTLISVFT FT LSGPGPLAFLRRQTNEAV" FT misc_feature complement(444748..445986) FT /gene="lacY" FT /locus_tag="ROD_03981" FT /note="HMMPfam hit to PF01306, Proton/sugar symporter, FT LacY, score 0" FT /inference="protein motif:PFAM:PF01306" FT misc_feature complement(join(444784..444852,444880..444948, FT 444985..445053,445141..445209,445426..445485, FT 445495..445554,445612..445680,445693..445761, FT 445786..445854,445882..445950)) FT /gene="lacY" FT /locus_tag="ROD_03981" FT /note="10 probable transmembrane helices predicted for FT ROD03981 by TMHMM2.0 at aa 13-35, 45-67, 76-98, 103-125, FT 145-164, 168-187, 260-282, 312-334, 347-369 and 379-401" FT misc_feature complement(445105..445149) FT /note="PS00897 LacY family proton/sugar symporters FT signature 2." FT /inference="protein motif:Prosite:PS00897" FT misc_feature complement(445285..445317) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(445753..445797) FT /note="PS00896 LacY family proton/sugar symporters FT signature 1." FT /inference="protein motif:Prosite:PS00896" FT CDS complement(446038..449121) FT /transl_table=11 FT /gene="lacZ" FT /locus_tag="ROD_03991" FT /product="beta-galactosidase" FT /EC_number="3.2.1.23" FT /db_xref="GOA:D2TK51" FT /db_xref="InterPro:IPR004199" FT /db_xref="InterPro:IPR006101" FT /db_xref="InterPro:IPR006102" FT /db_xref="InterPro:IPR006103" FT /db_xref="InterPro:IPR006104" FT /db_xref="InterPro:IPR008979" FT /db_xref="InterPro:IPR011013" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR013812" FT /db_xref="InterPro:IPR014718" FT /db_xref="InterPro:IPR017853" FT /db_xref="InterPro:IPR023230" FT /db_xref="InterPro:IPR023232" FT /db_xref="InterPro:IPR023933" FT /db_xref="UniProtKB/TrEMBL:D2TK51" FT /protein_id="CBG87181.1" FT /translation="MNLNTDSLAAVLARRDWENPGVTQLNRLEAHPPFSSWRNADDARA FT CRDATHKRSLNGEWRFAWFPSPEAVPESWLTDDLQQADSVQLPSNWQMYGYDAPIYTNV FT TYPIPVNPPFVPSDNPTGCYSLTFTVDDAWLREGQTRIIFDGVNSAFHLWCNGRWIGYG FT QDSRLPSEFDLSAFLTSGENRLAVMVLRWCDGTYLEDQDMWRMSGIFRDVTLLHKPLTQ FT ISDLRIATHFNDDFSRAELAAEVRLRGELCDELRVTVQLWDGETQVGECTAPLGSEIID FT ERGAWHDRVSLRLKVDKPSLWSAETPWLYRAVALLHTADGTLIEAEACDVGFREVKIEN FT GLLLLNGKPLLIRGANRHEHHPQNGQVMDEATMVQDILLMKQNNFNAVRCSHYPNHPLW FT YTLCDRYGLYVVDEANIETHGMTPMNRLSDDPDWLPAMSQRVTRMVQRDRNHPAIIIWS FT LGNESGHGANHDALYRWLKAEDPSRPVQYEGGGANSAATDIICPMYARVDQDQPFPAVP FT KWSIKKWLSMPGEQRPLILCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSL FT IKYDENGNPWSAYGGDFGDTPNDRQFCMDGLVFADRTPHPSLYEAKHAQQFFQFTLLPG FT DGMRIEVASEYLFRHSDNEILHWSITLDGNPVAAGEAALDIAPQGRQLIALPDIAAPDA FT AGQLWLTVRVEQPQATAWSPAGHISAWQQWPLAEKLSVTIPPRAAAAPQLKVENAAFEV FT VVNQQRWQFCRQRGTLSQYWIADAAQLLTPLTDQFTRAPLDNDIGISEVTRIDPNAWVE FT RWKAAGHYRAEAQLLQCEAETLSNAVLITTAHAWQYQGETLFVSRKIWRIDGQGELTIT FT VDVDVASGTPHPARVGLSCQLAQVAERVNWLGLGPHENYPDRLSAACFDRWDLPLAEMY FT TPYVFPSENGLRCGTRELCYGAHRWRGDFQFNISRYSQKQLMETSHRHLLREENGTWLN FT IDGYHMGVGGDDSWSPSVSPEYQLSAGRYHYQIVWGQK" FT misc_feature complement(446047..446868) FT /gene="lacZ" FT /locus_tag="ROD_03991" FT /note="HMMPfam hit to PF02929, Glycoside hydrolase, family FT 42, domain 5, score 6.2e-140" FT /inference="protein motif:PFAM:PF02929" FT misc_feature complement(447232..448116) FT /gene="lacZ" FT /locus_tag="ROD_03991" FT /note="HMMPfam hit to PF02836, Glycoside hydrolase family FT 2, TIM barrel, score 2.4e-188" FT /inference="protein motif:PFAM:PF02836" FT misc_feature complement(447736..447780) FT /note="PS00608 Glycosyl hydrolases family 2 acid/base FT catalyst." FT /inference="protein motif:Prosite:PS00608" FT misc_feature complement(447889..447966) FT /note="PS00719 Glycosyl hydrolases family 2 signature 1." FT /inference="protein motif:Prosite:PS00719" FT misc_feature complement(448120..448461) FT /gene="lacZ" FT /locus_tag="ROD_03991" FT /note="HMMPfam hit to PF00703, Glycoside hydrolase family FT 2, immunoglobulin-like beta-sandwich, score 3.2e-47" FT /inference="protein motif:PFAM:PF00703" FT misc_feature complement(448465..448977) FT /gene="lacZ" FT /locus_tag="ROD_03991" FT /note="HMMPfam hit to PF02837, Glycoside hydrolase family FT 2, carbohydrate-binding, score 2.3e-92" FT /inference="protein motif:PFAM:PF02837" FT CDS complement(449243..450331) FT /transl_table=11 FT /gene="lacI" FT /locus_tag="ROD_04001" FT /product="lactose operon repressor" FT /db_xref="GOA:D2TK52" FT /db_xref="InterPro:IPR000843" FT /db_xref="InterPro:IPR001761" FT /db_xref="InterPro:IPR010982" FT /db_xref="UniProtKB/TrEMBL:D2TK52" FT /protein_id="CBG87182.1" FT /translation="MNVKPVTLYDVANHAGVSYQTVSRVVNQASHVSARTREKVEAAMA FT ELNYIPNRIAQQLAGKQTPLIGVATANLALHAPSQIVAAIKSRADRSGASVVISMVERH FT GAEACKAAVHNLLTQRVTGLIINYPLDENDAIAVAAACGDVPVLFLDVSDLAPVNSIIF FT SHADGARLAVEHLVEHGHQRIALLAGPHSSVSARLRLAGWHKYLAHHQRQPVAEAEGDW FT SAMSGFQQTMKMLTDGAQPGALLVANDQMALGAMRAISEFGLRPGVDISVIGYDDTEDS FT ACYIPPLTTIRQDFPQLGEASVERLLKLAGGESAFGNQLLPVTLVKRKTVQRADAPAAS FT PQALADSLLHLARQVAQLSPKM" FT misc_feature complement(449330..449986) FT /gene="lacI" FT /locus_tag="ROD_04001" FT /note="HMMPfam hit to PF00532, Periplasmic binding FT protein/LacI transcriptional regulator, score 1.2e-13" FT /inference="protein motif:PFAM:PF00532" FT misc_feature complement(450239..450316) FT /gene="lacI" FT /locus_tag="ROD_04001" FT /note="HMMPfam hit to PF00356, Bacterial regulatory FT protein, LacI, score 1.9e-11" FT /inference="protein motif:PFAM:PF00356" FT misc_feature complement(450251..450316) FT /note="Predicted helix-turn-helix motif with score FT 2026.000, SD 6.09 at aa 6-27, sequence FT VTLYDVANHAGVSYQTVSRVVN" FT misc_feature complement(450254..450310) FT /note="PS00356 Bacterial regulatory proteins, lacI family FT signature." FT /inference="protein motif:Prosite:PS00356" FT CDS complement(450359..451315) FT /transl_table=11 FT /locus_tag="ROD_04011" FT /product="putative AraC-family transcriptional regulator" FT /db_xref="GOA:D2TK53" FT /db_xref="InterPro:IPR002818" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012287" FT /db_xref="InterPro:IPR018060" FT /db_xref="UniProtKB/TrEMBL:D2TK53" FT /protein_id="CBG87183.1" FT /translation="MRPVTVAIVAVDNFSPFHYSVPSILFSDKVAAQKRFTVKICAEAP FT GTLSSQEGFSLHAAYGYEAINDAGIVIVPYWDDTDRRPPQTLLAALRAARQNGAQIVGL FT CLGAFVLGYAGLLEGKRAATHWAFEEEFQARFPAAKLDINALYVDDEGIITSAGTAAAL FT DCCLYIIRQRFGSVVANQIARKMVVPPHREGGQAQYIARPVPESTRDQRINALLDYLRQ FT HLHEPHDLNSLAQRVRMSRRTLSRHFMNATGCSVAEWLIRERLRLSQTLLESSQLPVER FT IAGEAGFQSAVTWRQHFKSHFGVSPTEWRKTFRGVAS" FT misc_feature complement(450383..450517) FT /locus_tag="ROD_04011" FT /note="HMMPfam hit to PF00165, Helix-turn-helix, AraC type, FT score 2.3e-06" FT /inference="protein motif:PFAM:PF00165" FT misc_feature complement(450533..450673) FT /locus_tag="ROD_04011" FT /note="HMMPfam hit to PF00165, Helix-turn-helix, AraC type, FT score 4.1e-05" FT /inference="protein motif:PFAM:PF00165" FT misc_feature complement(450569..450634) FT /note="Predicted helix-turn-helix motif with score FT 1516.000, SD 4.35 at aa 228-249, sequence FT HDLNSLAQRVRMSRRTLSRHFM" FT misc_feature complement(450794..451207) FT /locus_tag="ROD_04011" FT /note="HMMPfam hit to PF01965, ThiJ/PfpI, score 3.7e-05" FT /inference="protein motif:PFAM:PF01965" FT CDS complement(451327..452103) FT /transl_table=11 FT /locus_tag="ROD_04021" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TK54" FT /db_xref="InterPro:IPR001279" FT /db_xref="UniProtKB/TrEMBL:D2TK54" FT /protein_id="CBG87184.1" FT /translation="MNITQIRNATQLITYGGKTFLIDPLLAPKGAYPGFPGTARAEIRN FT PTVELPCDIDSLLQADALIVTHLHADHWDDVAAKVVPKDKPIYVQNARDAQTLRGQGFT FT ALTVLAENTVFGEVTLRKTGGQHGSDRLYAIPKMAERLGEACGVIFTHPQEKTLYLAGD FT TIWRAEVEASLTRYQPDVVVLNAGFAHVIGFGPIIMGAEDVLKTHFILPEAQIVATHME FT AINHCLLTRAALREYARDNQIAEYVHVPEDGETLTF" FT CDS 452318..452824 FT /transl_table=11 FT /locus_tag="ROD_04031" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR019690" FT /db_xref="UniProtKB/TrEMBL:D2TK55" FT /protein_id="CBG87185.1" FT /translation="MKWGCIKCGVEIPQHTEYCSECEDKQFTKIGGFLYLPLLGLFITA FT LSHLVASYESFKYLVDNFYHLFFDAKLFFIGTFTISLVVFLAAAWVISVFLRKKKSLPK FT LYIGLMLLLIVLTALNTWMLSVLIPGIYIGSEELVPLLRLIISACIWIPYFLKSVRVKR FT TFINP" FT misc_feature join(452405..452473,452531..452599,452636..452704, FT 452732..452785) FT /locus_tag="ROD_04031" FT /note="4 probable transmembrane helices predicted for FT ROD04031 by TMHMM2.0 at aa 30-52, 72-94, 107-129 and FT 139-156" FT CDS complement(453123..454169) FT /transl_table=11 FT /gene="fbpC" FT /locus_tag="ROD_04041" FT /product="Fe(3+) ions import ATP-binding protein FbpC (ec FT 3.6.3.30)" FT /EC_number="3.6.3.30" FT /db_xref="GOA:D2TK56" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR008995" FT /db_xref="InterPro:IPR013611" FT /db_xref="InterPro:IPR015853" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TK56" FT /protein_id="CBG87186.1" FT /translation="MSQKNFVELRNVSKRFGSNTVIDNINLTIPQGQMVTLLGPSGCGK FT TTILRLVAGLEKPSDGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGDNVGYGLK FT MLGVSRAEVKARVKEALAMVDLEGFADRYVDQISGGQQQRVALARALILKPKVLLFDEP FT LSNLDANLRRSMRDKIRELQKQFNITSLYVTHDQSEAFAVSDTVLVMNKGHIMQIGSPQ FT DLYRQPASRFMASFMGDANLFPATFSAQAVEIYGYRLPRPAHFVAEGSGTVGVRPEAIT FT LSDRGEESQRCTIRHVAYMGPQYEVTVEWHGQEILLQVNATRLQPDVGEHYYLEIHPYG FT MFVLADAA" FT misc_feature complement(453138..453353) FT /gene="fbpC" FT /locus_tag="ROD_04041" FT /note="HMMPfam hit to PF08402, Transport-associated OB, FT type 2, score 1.7e-15" FT /inference="protein motif:PFAM:PF08402" FT misc_feature complement(453531..454076) FT /gene="fbpC" FT /locus_tag="ROD_04041" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 3e-67" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(453717..453761) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(454032..454055) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(454181..456259) FT /transl_table=11 FT /gene="afuB" FT /locus_tag="ROD_04051" FT /product="Ferric ABC transporter permease protein" FT /db_xref="GOA:D2TK57" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TK57" FT /protein_id="CBG87187.1" FT /translation="MSQTLALHPVKKRDAIFLWVLLSWLAFALLPSWSLDYGLLESTRD FT EILDAYGWAGVNVSWLWYLLPGLLLARPLHEARREQRSRHYLDAGWALLCMAFVVVSAT FT LEGRGLGYAAIVLFVALGAIVTLALTRLEWLGGDRFVIGSLVAIIALIGVFIVWPSIAI FT FIPMFTNDAGEFAPLAFMTVLSQAHIIQVIINSVALSMAVGVGCTFFGLVLAIYTTRIA FT RRGAVIGRIFSILPIVTPPFVVGLGVTLMMGRSGYVTELMVEWFGLSNTNWLYGFTGIW FT LAQVLAFTPMAFMILDGAIKTIHPSLEEASYTLRASRWQTFNGVFVPLLKPALANAFLI FT VIVQSLADFSNPLVLGGNFDVLATQIYFYITGSQLDYQAASTLGAFLLLFSLLVFCIQY FT MWIGKRSYVTVSGKSYRGDVQPLPVTLVWGVIAILAVWIAFNALLYGSIFYGSFTVNWG FT VDYTLTLDNFIKLFGQGMSDGAWPSLLDTLLYAGIAAPITAAFGLLIAWIVVRQQFKGK FT KTIEFTTMLCFAVPGTVAGVSYILAFNSAPVYLTGTAAIVIISMVMRNVPVGIRAGIAG FT LGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTP FT DTRVATAYILNRVEDGEYGVAIAYGSILIVVMLAIIFIFDWLIGEARISRSKAKNQA" FT misc_feature complement(454193..454822) FT /gene="afuB" FT /locus_tag="ROD_04051" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 3.2e-07" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(join(454226..454294,454361..454429, FT 454556..454624,454637..454696,454730..454798, FT 454922..454990,455051..455119,455219..455287, FT 455375..455443,455501..455569,455606..455701, FT 455759..455827,455864..455932,455945..456007, FT 456044..456112,456155..456214)) FT /gene="afuB" FT /locus_tag="ROD_04051" FT /note="16 probable transmembrane helices predicted for FT ROD04051 by TMHMM2.0 at aa 16-35, 50-72, 85-105, 110-132, FT 145-167, 187-218, 231-253, 273-295, 325-347, 381-403, FT 424-446, 488-510, 522-541, 546-568, 611-633 and 656-678" FT misc_feature complement(455039..455683) FT /gene="afuB" FT /locus_tag="ROD_04051" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 9.3e-10" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(455639..455671) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT sig_peptide complement(456158..456259) FT /gene="afuB" FT /locus_tag="ROD_04051" FT /note="Signal peptide predicted for ROD04051 by SignalP 2.0 FT HMM (Signal peptide probability 0.671) with cleavage site FT probability 0.438 between residues 34 and 35" FT CDS complement(456337..457368) FT /transl_table=11 FT /gene="afuA" FT /locus_tag="ROD_04061" FT /product="ABC transporter periplasmic iron-binding protein" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:D2TKU7" FT /protein_id="CBG87188.1" FT /translation="MKMTFTSTLIASAVALAALTGAAQAKGRLVVYCSATNELCEAQTK FT AFGEKYDVKTSFIRNGSGSTLAKVDAEKKNPQADVWYGGTLDPQSQAGEMGLLQPYKSP FT ALAQVMENFRDPAKLKGNYSSAVYVGILGFGVNTERLKEKNLPVPKCWKDLTKPEYKGE FT IQIADPQSSGTAYTALATFVQLWGDDQAFDYLKQLNANVSQYTKSGIAPARNAARGETA FT IGIGFLHDYSLEKEQGAPLELISPCEGTGYEIGGVSILKGARNLDNARLFVDWVLSKEA FT QELAWKKGKSYQILSNTTAETSPNSLKLDGLKLIHYDMDKYGSTEVRKALINKWVSDVK FT MGK" FT misc_feature complement(456520..457341) FT /gene="afuA" FT /locus_tag="ROD_04061" FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein, family 1, score 4.8e-12" FT /inference="protein motif:PFAM:PF01547" FT sig_peptide complement(457294..457368) FT /gene="afuA" FT /locus_tag="ROD_04061" FT /note="Signal peptide predicted for ROD04061 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.985 between residues 25 and 26" FT CDS complement(457365..458669) FT /transl_table=11 FT /gene="uhpC" FT /locus_tag="ROD_04071" FT /product="putative regulatory protein" FT /db_xref="GOA:D2TKU8" FT /db_xref="InterPro:IPR000849" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TKU8" FT /protein_id="CBG87189.1" FT /translation="MHARQTTAIDQRYRALRLTLLLCMVTGYAAFYLTRKSVNYVLPAL FT QTDLGLDKGDIGLLGSLFYLSYGLSKFTAGLWHDSHGQRGFMGAGLFATGVLNVAFAFG FT ESLTLLLAVWTLNGFFQGWGWPPCARLLTHWYSRNERGFWWGCWNMSINIGGAIIPLIS FT AFAAHWWGWQAAMLTPGIISMALGIWLTLQLKGTPREEGLPSVGAWRNDPLELRQEQLS FT PPMGLWRMLRITMLRNPMIWLLGGSYVLVYLIRIALNDWGNIWLTESHGVNLLSANATV FT MLFEVGGLLGALFAGWGSDLLFSGQRAPMILLFTLGLMVSVAALWLAPVHHYALLAACF FT FTVGFFVFGPQMLIGLAAVECGHKAAAGSITGFLGLFAYLGAALAGWPLSLVIERYDWS FT GMFSLLSIAAVLMGLLLMPLLMAGVSATLSQRIKQ" FT misc_feature complement(join(457398..457466,457509..457577, FT 457602..457670,457680..457748,457782..457850, FT 457893..457952,458097..458165,458178..458246, FT 458283..458351,458361..458417,458436..458504, FT 458574..458633)) FT /gene="uhpC" FT /locus_tag="ROD_04071" FT /note="12 probable transmembrane helices predicted for FT ROD04071 by TMHMM2.0 at aa 13-32, 56-78, 85-103, 107-129, FT 142-164, 169-191, 240-259, 274-296, 308-330, 334-356, FT 365-387 and 402-424" FT misc_feature complement(457488..458600) FT /gene="uhpC" FT /locus_tag="ROD_04071" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 1.8e-47" FT /inference="protein motif:PFAM:PF07690" FT misc_feature complement(457653..457685) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(458754..460301) FT /transl_table=11 FT /gene="uhpB" FT /locus_tag="ROD_04081" FT /product="two-component system sensor histidine kinase" FT /db_xref="GOA:D2TKU9" FT /db_xref="InterPro:IPR003594" FT /db_xref="InterPro:IPR003661" FT /db_xref="InterPro:IPR005467" FT /db_xref="InterPro:IPR007895" FT /db_xref="InterPro:IPR011712" FT /db_xref="UniProtKB/TrEMBL:D2TKU9" FT /protein_id="CBG87190.1" FT /translation="MSHPLRYVVISLFIVLAWGTGWLMLWTLGFYLTHNGQQAALFLPH FT GVYLALLILLARRYWPALVLPPMLMLLWLRSEQLLSGDLLVLLAAPLVSLLPASIAQRF FT WQRFPLYWQRLTLLLTAVTVASLLNTALLSPLLKSPAMLSGLASFTGGVLLTPFVYLIF FT EFLRQQHRYQLLAQDTQNPPLRTSLIIWCSLFFIIGIGTQLTLSPELERLLLIVVFLPN FT VVMAWKFGWQGGVLAGLLGSMMITIARQVGVGFSNLIELEIFLATQALLGMGLGIAISR FT QQHLAQNLHHYRQRLEAELAARRALTEKLIHSEEDTRKSLARELHDEIGQNITAIQIQT FT QLVKRARDPAQTQAAASQINDLARRIHHSTRQLLRQLRPPALDELSFNEALHHLLNEFA FT FAERGIRCRFDYRLTATPESETVRFTLYRLLQELLNNVCKHAEASEVAILLCQQGERLR FT LEVQDNGTGIGDGQLPGFGIQGMRERVSALGGELSLESRHGTRVIVNLPTNLQQTHG" FT misc_feature complement(458775..459041) FT /gene="uhpB" FT /locus_tag="ROD_04081" FT /note="HMMPfam hit to PF02518, ATP-binding region, FT ATPase-like, score 1.3e-20" FT /inference="protein motif:PFAM:PF02518" FT misc_feature complement(459156..459353) FT /gene="uhpB" FT /locus_tag="ROD_04081" FT /note="HMMPfam hit to PF07730, Histidine kinase, FT dimerisation and phosphoacceptor region, score 1e-16" FT /inference="protein motif:PFAM:PF07730" FT misc_feature complement(459453..460274) FT /gene="uhpB" FT /locus_tag="ROD_04081" FT /note="HMMPfam hit to PF05231, MASE1, score 1.3e-59" FT /inference="protein motif:PFAM:PF05231" FT misc_feature complement(join(459462..459530,459549..459617, FT 459684..459752,459813..459881,459891..459959, FT 459996..460064,460122..460187,460206..460274)) FT /gene="uhpB" FT /locus_tag="ROD_04081" FT /note="8 probable transmembrane helices predicted for FT ROD04081 by TMHMM2.0 at aa 10-32, 39-60, 80-102, 115-137, FT 141-163, 184-206, 229-251 and 258-280" FT CDS complement(460301..460930) FT /transl_table=11 FT /gene="uhpA" FT /locus_tag="ROD_04091" FT /product="two-component system response regulator protein" FT /db_xref="GOA:D2TKV0" FT /db_xref="InterPro:IPR000792" FT /db_xref="InterPro:IPR001789" FT /db_xref="InterPro:IPR011006" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR016032" FT /db_xref="UniProtKB/TrEMBL:D2TKV0" FT /protein_id="CBG87191.1" FT /translation="MIRVVLVDDHVVVRSGFAQLLSLEEDLEVAGQFSRAADAWPALLR FT DDVSVAVMDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDSPTFVQSALTAGASGYLTK FT RCGPEELVQAVRSVGLGGHYLCADALRALRGGEQLPPELEALTPREREVFNLLVKGDSV FT KEIAFKLDLSHKTVHVYRANVLGKLNCHSTIELVHFALDHKLLVGH" FT misc_feature complement(460331..460504) FT /gene="uhpA" FT /locus_tag="ROD_04091" FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT protein, LuxR, score 1.3e-24" FT /inference="protein motif:PFAM:PF00196" FT misc_feature complement(460370..460453) FT /note="PS00622 Bacterial regulatory proteins, luxR family FT signature." FT /inference="protein motif:Prosite:PS00622" FT misc_feature complement(460583..460927) FT /gene="uhpA" FT /locus_tag="ROD_04091" FT /note="HMMPfam hit to PF00072, Response regulator receiver, FT score 2e-33" FT /inference="protein motif:PFAM:PF00072" FT CDS 461184..462146 FT /transl_table=11 FT /gene="tauA" FT /locus_tag="ROD_04101" FT /product="taurine ABC transporter, substrate-binding FT protein (sulfate starvation induced protein)" FT /db_xref="GOA:D2TKV1" FT /db_xref="InterPro:IPR001638" FT /db_xref="InterPro:IPR007210" FT /db_xref="InterPro:IPR010068" FT /db_xref="UniProtKB/TrEMBL:D2TKV1" FT /protein_id="CBG87192.1" FT /translation="MALSSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQADNTF FT EKASGATVAWRKFDSGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKLGN FT SEALVVKKTIGKPQDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQLEIINLQPPAIIA FT AWQRGDIDGAYVWAPAVNALEKEGRVLTDLAMVGEWGSPTLDVWVVRKDFAEQHPEVVK FT AFAKSALDAQQSYIANPDDWLKQPENISKLSRLSGVPEADVPGLVKGNTYLTPQQQTAE FT LNGPVNKAIIDTAQFLKEQGKVPAVASDYSQYVTDRFVQ" FT sig_peptide 461184..461249 FT /gene="tauA" FT /locus_tag="ROD_04101" FT /note="Signal peptide predicted for ROD04101 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.998 between residues 22 and 23" FT misc_feature 461250..461918 FT /gene="tauA" FT /locus_tag="ROD_04101" FT /note="HMMPfam hit to PF04069, Substrate-binding region of FT ABC-type glycine betaine transport system, score 2e-26" FT /inference="protein motif:PFAM:PF04069" FT CDS 462157..462924 FT /transl_table=11 FT /gene="tauB" FT /locus_tag="ROD_04111" FT /product="taurine ABC transporter, ATP-binding protein" FT /db_xref="GOA:D2TKV2" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR015859" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TKV2" FT /protein_id="CBG87193.1" FT /translation="MLQLSHLYADYGGKPALEDINLTLDSGELLVVLGPSGCGKTTLLN FT LIAGFAPYRHGTIQLAGKRVDGPGAERGVVFQHEGLLPWRNVQDNVAFGLQLAGVGKAQ FT RIHVAQEMLKKVGLEGAGKRFIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDVFT FT REQMQTLLLRLWHETGKQVLLITHDIEEAVFMATELVLLSPGPGRVLERLPLNFARRFV FT AGESCRSIKSDPQFIDTREYVLNRVFAQREAFS" FT misc_feature 462235..462771 FT /gene="tauB" FT /locus_tag="ROD_04111" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 2.8e-53" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 462256..462279 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 462541..462585 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT CDS 462921..463754 FT /transl_table=11 FT /gene="tauC" FT /locus_tag="ROD_04121" FT /product="taurine ABC transporter, permease protein" FT /db_xref="GOA:D2TKV3" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TKV3" FT /protein_id="CBG87194.1" FT /translation="MSVAINDKPRQRALKLKWRWPLSRQLTLSLGTLAVIVSVWWAVAT FT LQLVSPLFLPPPGQVLQKLWVIAGPQGFMDATLWQHLAASLTRIVLALLAAAIVGIPVG FT IAMGLSPAIRGVLDPIIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSA FT LAGVKSAQQVRLRAAQSLGASRSQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELI FT AATRGLGFMVQSAGEFLATDVVLAGIAVIAVIAFMLELGLRALQRRLTPWHGEVQ" FT misc_feature join(462981..463049,463179..463247,463281..463349, FT 463362..463421,463482..463550,463632..463700) FT /gene="tauC" FT /locus_tag="ROD_04121" FT /note="6 probable transmembrane helices predicted for FT ROD04121 by TMHMM2.0 at aa 21-43, 87-109, 121-143, 148-167, FT 188-210 and 238-260" FT misc_feature 463164..463733 FT /gene="tauC" FT /locus_tag="ROD_04121" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 6.1e-21" FT /inference="protein motif:PFAM:PF00528" FT misc_feature 463419..463505 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT CDS 463751..464602 FT /transl_table=11 FT /gene="tauD" FT /locus_tag="ROD_04131" FT /product="alpha-ketoglutarate-dependent taurine FT dioxygenase" FT /EC_number="1.14.11.17" FT /db_xref="GOA:D2TKV4" FT /db_xref="InterPro:IPR003819" FT /db_xref="UniProtKB/TrEMBL:D2TKV4" FT /protein_id="CBG87195.1" FT /translation="MSERLSITPLGPYIGALISGADLSRPLSDNQFEQLYHAVLRHQVV FT FLREQVITPQQQRALALRFGDLHIHPVYPHAEGVEEIIVLDTHNDNPPDNDNWHTDVTF FT IETPPAGAILAAKELPSTGGDTLWTSGIAAYEALSAPFRQLLSGLRAEHDFRKSFPEHK FT YRATEEEHQRWREAVAKHPPLLHPVVRTHPVSGRQALFVNEGFTTRIVDVTEKESDALL FT SFLFAHITRPEFQVRWRWQPNDVAVWDNRVTQHYANADYLPQRRIMHRATILGDKPFYR FT AG" FT misc_feature 463766..464590 FT /gene="tauD" FT /locus_tag="ROD_04131" FT /note="HMMPfam hit to PF02668, Taurine catabolism FT dioxygenase TauD/TfdA, score 1.7e-121" FT /inference="protein motif:PFAM:PF02668" FT misc_feature 464105..464122 FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT /inference="protein motif:Prosite:PS00343" FT CDS complement(464672..465646) FT /transl_table=11 FT /gene="hemB" FT /locus_tag="ROD_04141" FT /product="delta-aminolevulinic acid dehydratase" FT /EC_number="4.2.1.24" FT /db_xref="GOA:D2TKV5" FT /db_xref="InterPro:IPR001731" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:D2TKV5" FT /protein_id="CBG87196.1" FT /translation="MTDLIQRPRRLRKSAALRAMFEETTLSLNDLVLPIFVEEELDDYK FT AIEAMPGIMRIPEKHLAREIERIASAGIRSVMTFGISHHTDETGSDAWKEDGLVARMSR FT ICKQTVPDMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLANLGKQAVVAAAAGADFIA FT PSAAMDGQVQAIRQALDAAGFTDTAIMSYSTKFASSFYGPFREAAGTALKGDRKTYQMN FT PMNRREAIRESLLDEAQGADCLMVKPAGAYLDVLRDIRERTELPLGAYQVSGEYAMIKF FT AAMAGAIDEEKVVLESLGAIKRAGADLIFSYFALDLAEKKILR" FT misc_feature complement(464684..465640) FT /gene="hemB" FT /locus_tag="ROD_04141" FT /note="HMMPfam hit to PF00490, Tetrapyrrole biosynthesis, FT porphobilinogen synthase, score 1.2e-226" FT /inference="protein motif:PFAM:PF00490" FT misc_feature complement(464891..464929) FT /note="PS00169 Delta-aminolevulinic acid dehydratase active FT site." FT /inference="protein motif:Prosite:PS00169" FT CDS 465938..468859 FT /transl_table=11 FT /locus_tag="ROD_04151" FT /product="putative outer membrane autotransporter" FT /db_xref="GOA:D2TKV6" FT /db_xref="InterPro:IPR003991" FT /db_xref="InterPro:IPR005546" FT /db_xref="InterPro:IPR006315" FT /db_xref="InterPro:IPR011050" FT /db_xref="UniProtKB/TrEMBL:D2TKV6" FT /protein_id="CBG87197.1" FT /translation="MHSWKKKLVVSQLALACTLAITSQANASTDISGTTYNTFTHYDNS FT THADGVYFEGYVGWNNYATNSVYNGNIYPVIKNSTVNGVISTYYLDDGLATNANDNSLT FT IKNSTIHGMITSECMTTDCVNRDTGYVYDRLALTVDNSTIDDNYEHYTYNGTYTDGTAD FT THIFDVYNLGVAVTLDQEVDLVIKNNSHVAGISLIQGYEWEDTDDNTVSTGVNSSKVFT FT NKITVADSTVTSGSWSDEGTSGWFGNNNNASDYNGSGYSADDVALEVYANPFADNAMQT FT TATFSNSTLMGDVVFASNFDENFFPNGADSYRDTDTNVDTNGWDGTDRLDLTLNNGSKW FT VGAAMSVHQVDTDGDGVYDSIETGTEATSTLIDIAANSLWPWSTYGVDNSDTAYDENGH FT VVGNEVYQSGLFNVTLNNGSQWDTTKSSLIDTLNINSGSIVNVADSTLISDTIDLTGGA FT ALNINEDGHVATDKLTVNNSTVTIADDVSAGWGVNDAALYANTINVTNNGVLDVGNSTA FT YALQADTLNLTSYTDANGHVNAGVFNVHSNSFVLDADLTNDRTWDTTKSNYGYGIIAMN FT SDGHLTINGNGDAYSADLAEVDNAGDGVAAATGNYKVRIDNATGEGSVADYKGKELIYV FT NDKNSTATFSAANKADLGAFTYQARQEGNTVVLQQMQLTDYANMALSIPSANSNIWNLQ FT QDTVGTRLTNARHGLADNGGAWVSYFGGNFNGDNGTIKYDQDVNGIMVGVDTKIDGNNA FT KWIVGAAAGFAKGDMSDRTGQVDQDSQSAYIYSSARFANDVFVDGNLSYSHFNNDLTAN FT MSNGQYVDGNTSADAWGFGLKLGYDWKLGDAGYLTPYGSVSGLFQSGDDYRLSNNLRVD FT GQSYDSIRYELGVDAGYTFTYSDDQAMTPYFKLAYVYDDANNDAHVNGDSIDNGTEGSA FT VRVGLGTQFSFTKNFSAYTDVNYLGGGDVDQDWSANLGVKYTW" FT sig_peptide 465938..466018 FT /locus_tag="ROD_04151" FT /note="Signal peptide predicted for ROD04151 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.962 between residues 27 and 28" FT misc_feature 468062..468799 FT /locus_tag="ROD_04151" FT /note="HMMPfam hit to PF03797, Autotransporter beta-domain, FT score 9.5e-32" FT /inference="protein motif:PFAM:PF03797" FT CDS 468906..469574 FT /transl_table=11 FT /locus_tag="ROD_04161" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TKV7" FT /protein_id="CBG87198.1" FT /translation="MPIKDLMGITARKASMLSLDKPLKEFALLNKCLSKYGTRFEIPRQ FT KECLFSENIAHDNTIVIQEGLISLRRQEQVLVGIGQAPVILGLDNGVMKNEVQYDIFTE FT GACSGYYLPSTKTVEVIEECQLWREACYWITWLNRFLELRDRQLIGNNSYEQIRSTLIT FT MNEWEEALRSRIGVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGKLVKINRLPYEY FT " FT CDS complement(469575..470732) FT /transl_table=11 FT /gene="ampH" FT /locus_tag="ROD_04171" FT /product="penicillin-binding protein" FT /db_xref="InterPro:IPR001466" FT /db_xref="InterPro:IPR012338" FT /db_xref="UniProtKB/TrEMBL:D2TKV8" FT /protein_id="CBG87199.1" FT /translation="MKRSLLFSAVLCAASLTSVQAAQPIAEPVFASDIVERYANHIFYG FT SGATGMALVVIDGNQRVFRSFGETRPGNNVRPQLDSVIRIASITKLMTSEMLVKLLDQG FT TVRLDDPLSKYAPPGAYVPSYQGKPITLVHLATHTSALPREQPGGAPKRPVFVWPTREQ FT RWTYLSDATLKAAPGSQASYSNLAYDLLADALANAAGKPYSQLFAEKITRPLGMKDTTF FT TPSPDQCKRLMVAEKGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYHRSNQAD FT RMQTLIYQRAQLTRVTGMDVPGKADALGLGWVYMAPKNGRPGIIQKTGGGGGFITYMAM FT IPQQNVGAFVVVTRSPLTRFKNMSDGINDLVVELSENRPLAVPAS" FT misc_feature complement(469614..470630) FT /gene="ampH" FT /locus_tag="ROD_04171" FT /note="HMMPfam hit to PF00144, Beta-lactamase, score FT 3.9e-74" FT /inference="protein motif:PFAM:PF00144" FT sig_peptide complement(470670..470732) FT /gene="ampH" FT /locus_tag="ROD_04171" FT /note="Signal peptide predicted for ROD04171 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.962 between residues 21 and 22" FT CDS 471074..472294 FT /transl_table=11 FT /gene="sbmA" FT /locus_tag="ROD_04181" FT /product="putative microcin B17 uptake protein" FT /db_xref="GOA:D2TKV9" FT /db_xref="InterPro:IPR009248" FT /db_xref="InterPro:IPR011527" FT /db_xref="UniProtKB/TrEMBL:D2TKV9" FT /protein_id="CBG87200.1" FT /translation="MFKSFFPKPGPFFLSALIWAVIAIIFWQAGGGARLAHLSGASGDA FT PISAARFWSPGYLIFYAYYALCVGAFALFWFTYSPHRWQYWSITGTALIIFVTWFLVEV FT GVAVNAWYAPFYDLIQQALTSPHKVTMAQFYNGLGIFLGIALIAVVISVLNNFFVSHYV FT FRWRTAMNEYYMAHWQHLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLVAFLPV FT LITLSAHVPELPVVGHVPYSLVMAAIVWSLIGTGLLAVVGIKLPGLEFKNQRVEAAYRK FT ELVYGEDDASRAAPPTVRELFSAVRQNYFRLYFHYMYFNIARILYLQADNVFGLFLLFP FT SIVAGTLTLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHTLDDKEIQ FT VVTHTLG" FT sig_peptide 471074..471181 FT /gene="sbmA" FT /locus_tag="ROD_04181" FT /note="Signal peptide predicted for ROD04181 by SignalP 2.0 FT HMM (Signal peptide probability 0.799) with cleavage site FT probability 0.500 between residues 36 and 37" FT misc_feature join(471107..471166,471239..471307,471326..471394, FT 471482..471550,471689..471757,471800..471868, FT 472067..472135,472163..472222) FT /gene="sbmA" FT /locus_tag="ROD_04181" FT /note="8 probable transmembrane helices predicted for FT ROD04181 by TMHMM2.0 at aa 12-31, 56-78, 85-107, 137-159, FT 206-228, 243-265, 332-354 and 364-383" FT misc_feature 471311..472255 FT /gene="sbmA" FT /locus_tag="ROD_04181" FT /note="HMMPfam hit to PF05992, SbmABacA-like, score FT 1.5e-239" FT /inference="protein motif:PFAM:PF05992" FT CDS 472309..473403 FT /transl_table=11 FT /locus_tag="ROD_04191" FT /product="putative lipoprotein" FT /db_xref="InterPro:IPR011673" FT /db_xref="UniProtKB/TrEMBL:D2TKW0" FT /protein_id="CBG87201.1" FT /translation="MAAASRLYPLSLLAGLVLVGCSTRTAQPLKQGEKPVDVASVVRQK FT MPASVKDRDDWANDLAKTFESQKIAPTVENVCSVLAVAQQESGYTADPVVPGLSKIAWQ FT EIDRRAERMHIPVFLVHTALKITSPNGKSYSERLDKVRTEKQLSAIFDDFINMVPMGQT FT LFGSLNPVHTGGPMQVSIAFAEQHARGYPWKMEGTVRQEVFTRRGGLWFGTYHLLNYPA FT NYSAPIFRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIMYGSKDAGKTELAVRK FT LADKLDLSESAIRRQLEKGDSLAFEETALYERVYALAEKKTGKKLPREMLPGIQLESPK FT ITRNLTTAWFAKRVDDRRAKCMGR" FT sig_peptide 472309..472386 FT /locus_tag="ROD_04191" FT /note="Signal peptide predicted for ROD04191 by SignalP 2.0 FT HMM (Signal peptide probability 0.986) with cleavage site FT probability 0.970 between residues 26 and 27" FT misc_feature 472339..472371 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 472450..473400 FT /locus_tag="ROD_04191" FT /note="HMMPfam hit to PF07759, Protein of unknown function FT DUF1615, score 7.4e-240" FT /inference="protein motif:PFAM:PF07759" FT misc_feature 473110..473133 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 473137..473202 FT /note="Predicted helix-turn-helix motif with score FT 1577.000, SD 4.56 at aa 277-298, sequence FT LAVRKLADKLDLSESAIRRQLE" FT CDS complement(473443..473751) FT /transl_table=11 FT /locus_tag="ROD_04201" FT /product="putative membrane protein" FT /db_xref="GOA:D2TKW1" FT /db_xref="InterPro:IPR020513" FT /db_xref="UniProtKB/TrEMBL:D2TKW1" FT /protein_id="CBG87202.1" FT /translation="MADFTLSKSLFNGKHRETSSTPGNIAYAVFVLFCFWAGAQILNLL FT VHAPGVYEHLMQVQETGRPRVEIGLGVGTIFGLVPFLVGSLIFGVIAAFLHWRHRHH" FT misc_feature complement(join(473482..473550,473611..473679)) FT /locus_tag="ROD_04201" FT /note="2 probable transmembrane helices predicted for FT ROD04201 by TMHMM2.0 at aa 25-47 and 68-90" FT CDS 473976..474224 FT /transl_table=11 FT /locus_tag="ROD_04211" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR020490" FT /db_xref="UniProtKB/TrEMBL:D2TKW2" FT /protein_id="CBG87203.1" FT /translation="MPACFFRSGAVMNLPVKIRRDWHYYAFAIGLIFILNGIVGLLGFD FT AKGWQTYAVGAVTWVISFWLAGLIIRRRVEEDETAQE" FT misc_feature join(474039..474107,474117..474185) FT /locus_tag="ROD_04211" FT /note="2 probable transmembrane helices predicted for FT ROD04211 by TMHMM2.0 at aa 22-44 and 48-70" FT CDS complement(474479..475573) FT /transl_table=11 FT /gene="ddlA" FT /locus_tag="ROD_04231" FT /product="D-alanine:D-alanine ligase A" FT /db_xref="GOA:D2TKW3" FT /db_xref="InterPro:IPR000291" FT /db_xref="InterPro:IPR005905" FT /db_xref="InterPro:IPR011095" FT /db_xref="InterPro:IPR011127" FT /db_xref="InterPro:IPR011761" FT /db_xref="InterPro:IPR013815" FT /db_xref="InterPro:IPR013816" FT /db_xref="InterPro:IPR013817" FT /db_xref="InterPro:IPR016185" FT /db_xref="UniProtKB/TrEMBL:D2TKW3" FT /protein_id="CBG87204.1" FT /translation="MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFEVVLLGIDK FT QGQWHVSDAANYLLNADDPAHIALRPSATRLAQVPGQHEHQLIDARTATPLPTVDVIFP FT IVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDKDVTKRLLRDTGLNIAPFVTLSR FT ANRHTFSFADIKARLGLPLFVKPANQGSSVGVSKVTNEAQYAQAVALAFEFDHKVVVEQ FT GIVGREIECAVLGNDRPQASTCGEIVLNSDFYAYDTKYIDDNGAKVVVPATIDPQINDK FT IRDIAIQAYQTLGCAGMARVDVFLTAENEVVINEINTLPGFTNISMYPKLWQASGLSYT FT DLISRLIELALERHAADNALKTTI" FT misc_feature complement(474530..475156) FT /gene="ddlA" FT /locus_tag="ROD_04231" FT /note="HMMPfam hit to PF07478, D-alanine--D-alanine ligase, FT C-terminal, score 5.2e-123" FT /inference="protein motif:PFAM:PF07478" FT misc_feature complement(474611..474697) FT /note="PS00844 D-alanine--D-alanine ligase signature 2." FT /inference="protein motif:Prosite:PS00844" FT misc_feature complement(475157..475564) FT /gene="ddlA" FT /locus_tag="ROD_04231" FT /note="HMMPfam hit to PF01820, D-alanine--D-alanine ligase, FT N-terminal, score 3e-82" FT /inference="protein motif:PFAM:PF01820" FT misc_feature complement(475220..475255) FT /note="PS00843 D-alanine--D-alanine ligase signature 1." FT /inference="protein motif:Prosite:PS00843" FT misc_feature complement(475532..475555) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 475660..476364 FT /transl_table=11 FT /locus_tag="ROD_04241" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR009683" FT /db_xref="UniProtKB/TrEMBL:D2TKW4" FT /protein_id="CBG87205.1" FT /translation="MKRKGGGVKGKGWLVIILLGAACGVGYRYLPSYYNPFAPLELADP FT PGWLTQFKLRQLTPERCHALLEQANQQKLISSQPVADSAGECPLTDVVRVRDFGVVKLS FT SSFLASCPLALSSALFVEQQARPLTERFMASRLVRIDHLGSFACRNIYHRPDARRSEHA FT SAQALDISGFRLADGRRISVLHGWKQEVSAPWLRALLNASCQYYGNGLGPEYNAAHANH FT FHLGMRGYGLCR" FT misc_feature 475696..475749 FT /locus_tag="ROD_04241" FT /note="1 probable transmembrane helix predicted for FT ROD04241 by TMHMM2.0 at aa 13-30" FT misc_feature 475696..475728 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 476017..476361 FT /locus_tag="ROD_04241" FT /note="HMMPfam hit to PF06904, Extensin-like, C-terminal, FT score 8e-59" FT /inference="protein motif:PFAM:PF06904" FT CDS 476533..477738 FT /transl_table=11 FT /locus_tag="ROD_04251" FT /product="putative efflux pump" FT /db_xref="GOA:D2TKW5" FT /db_xref="InterPro:IPR001958" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TKW5" FT /protein_id="CBG87206.1" FT /translation="MESWKVNLISVWFGCFFTGLAISQILPFLPLYISQLGVSSHEALS FT MWSGLTFSVTFLISAIVSPLWGSLADRKGRKLMLLRASLGMAIAILLQAFATNVWQLFL FT LRGIMGLTSGYIPNAMALVASQVPRERSGWALSTLATAQISGVIGGPLMGGFIADHVGL FT RPVFFITAMLLVVSFLVTLFLIKEGARPTLKKSERLSGKAVFASLPYPALIISLFFTTL FT VIQLCNGSISPILALFIKSMAPDSNNIAFLSGLIASVPGISALISAPRLGKLGDRIGTE FT RILLATLICAVVLFFAMSWVTTPLQLGILRFLLGFADGAMLPAVQTLLVKYSSDQITGR FT IFGYNQSFMYLGNVAGPLMGATVSAMAGFRWVFIATAIIVLINVLQLTLTLRRRRKRSA FT TV" FT misc_feature join(476551..476619,476662..476730,476764..476823, FT 476836..476904,476938..477006,477016..477084, FT 477142..477210,477277..477345,477379..477438, FT 477451..477519,477553..477621,477631..477699) FT /locus_tag="ROD_04251" FT /note="12 probable transmembrane helices predicted for FT ROD04251 by TMHMM2.0 at aa 7-29, 44-66, 78-97, 102-124, FT 136-158, 162-184, 204-226, 249-271, 283-302, 307-329, FT 341-363 and 367-389" FT misc_feature 476563..477627 FT /locus_tag="ROD_04251" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 3.2e-49" FT /inference="protein motif:PFAM:PF07690" FT CDS 477935..478252 FT /transl_table=11 FT /locus_tag="ROD_04261" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TKW6" FT /db_xref="InterPro:IPR019732" FT /db_xref="UniProtKB/TrEMBL:D2TKW6" FT /protein_id="CBG87207.1" FT /translation="MQHEFIVITSCFTGEGNRVMKNLIAELLLKLAQKEEESKELVAQV FT EALEIIVTAMLRNMAQNEQDTLIQQVEGALDGVKPDASIPDDDRELLRQYVQKLLKHPR FT Y" FT CDS 478464..479879 FT /transl_table=11 FT /gene="phoA" FT /locus_tag="ROD_04271" FT /product="alkaline phosphatase" FT /EC_number="3.1.3.1" FT /db_xref="GOA:D2TKW7" FT /db_xref="InterPro:IPR001952" FT /db_xref="InterPro:IPR017849" FT /db_xref="InterPro:IPR017850" FT /db_xref="InterPro:IPR018299" FT /db_xref="UniProtKB/TrEMBL:D2TKW7" FT /protein_id="CBG87208.1" FT /translation="MKQSAMIFALLPLLLAPASQADTTTISVLDNRAAQGDITTPGGAR FT RLTGDQTAALRESLNDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTG FT QYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHLTILEMAKAAGL FT ATGNVSTAELQDATPAALIAHVTSRKCYGPTATSEKCPTNALEKGGKGSITEQLLNARA FT DVTLGGGAKTFAETATAGEWQGKTLREQAQMRGYQLVGDAASLAAIDEANQDKPLLGLF FT AEGNMPVRWEGPKASYHGNIDKPAVTCTPNPKRNDAIPTLAQMTDKAIELLSKNERGFF FT LQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALAFAKKDGNTLVIVTADHAHASQIV FT APETKAPGLTQALNTKDGAVMVISYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQT FT DLFYTMKAALGLK" FT sig_peptide 478464..478526 FT /gene="phoA" FT /locus_tag="ROD_04271" FT /note="Signal peptide predicted for ROD04271 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.995 between residues 21 and 22" FT misc_feature 478635..479717 FT /gene="phoA" FT /locus_tag="ROD_04271" FT /note="HMMPfam hit to PF00245, Alkaline phosphatase, score FT 1.3e-152" FT /inference="protein motif:PFAM:PF00245" FT misc_feature 478824..478850 FT /note="PS00123 Alkaline phosphatase active site." FT /inference="protein motif:Prosite:PS00123" FT misc_feature 479178..479201 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 480057..480377 FT /transl_table=11 FT /gene="psiF" FT /locus_tag="ROD_04281" FT /product="phosphate starvation-inducible protein" FT /db_xref="InterPro:IPR011690" FT /db_xref="UniProtKB/TrEMBL:D2TKW8" FT /protein_id="CBG87209.1" FT /translation="MKITLLVTLLFGLVFLTTVGAAEKTLTPQQQRMTTCNQQATAQTL FT KGDARKTYMSDCLKNSQSAPGEKSLTPQQQKMRECNSQATQQSLKGDDRSKFMSACLKK FT AA" FT sig_peptide 480057..480119 FT /gene="psiF" FT /locus_tag="ROD_04281" FT /note="Signal peptide predicted for ROD04281 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.958 between residues 21 and 22" FT misc_feature 480069..480122 FT /gene="psiF" FT /locus_tag="ROD_04281" FT /note="1 probable transmembrane helix predicted for FT ROD04281 by TMHMM2.0 at aa 5-22" FT misc_feature 480129..480233 FT /gene="psiF" FT /locus_tag="ROD_04281" FT /note="HMMPfam hit to PF07769, PsiF, score 1.6e-18" FT /inference="protein motif:PFAM:PF07769" FT misc_feature 480261..480365 FT /gene="psiF" FT /locus_tag="ROD_04281" FT /note="HMMPfam hit to PF07769, PsiF, score 1.7e-21" FT /inference="protein motif:PFAM:PF07769" FT CDS 480516..481616 FT /transl_table=11 FT /locus_tag="ROD_04291" FT /product="putative signal transduction protein" FT /db_xref="GOA:D2TKW9" FT /db_xref="InterPro:IPR000160" FT /db_xref="InterPro:IPR001054" FT /db_xref="InterPro:IPR007894" FT /db_xref="UniProtKB/TrEMBL:D2TKW9" FT /protein_id="CBG87210.1" FT /translation="MNDENFYKRAVAVDETSSLTPPHDLQRSGLRFARRVRAPRAVALG FT GMFFPIAAALVTHPVAGGWWLLLVGWAFVWPHLAWQIASRAIDPRGQEFNNLKADAILA FT GMWVGLMGMNALPSAALLMIVSMNLMGAGGLRLSVIGLSMMAVACLVTLQLTGGSLILM FT SIPLVGWLTLPVMVIYPLLFARLSYQIATRLAEHKRRLQIMSSRDGMTGVYNRRHWEQL FT LRNEFELCRRQHRECTLLIIDIDHFKDINDTWGHDVGDEAIQALTRQLRTTLRSSDVIG FT RFGGDEFAVIMCGTPAESAIAAMSRVHEGLRALRLACAPQVILHISVGVAPLTPQFGHY FT REWLKSADLALYKAKNAGRNRTEVAA" FT misc_feature 480591..481100 FT /locus_tag="ROD_04291" FT /note="HMMPfam hit to PF05230, MASE2, score 2.2e-89" FT /inference="protein motif:PFAM:PF05230" FT misc_feature join(480636..480704,480822..480890,480924..480983, FT 480996..481064) FT /locus_tag="ROD_04291" FT /note="4 probable transmembrane helices predicted for FT ROD04291 by TMHMM2.0 at aa 41-63, 103-125, 137-156 and FT 161-183" FT misc_feature 480930..480962 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 481116..481598 FT /locus_tag="ROD_04291" FT /note="HMMPfam hit to PF00990, GGDEF, score 1.6e-65" FT /inference="protein motif:PFAM:PF00990" FT CDS complement(481632..482441) FT /transl_table=11 FT /gene="proC" FT /locus_tag="ROD_04301" FT /product="pyrroline-5-carboxylate reductase" FT /EC_number="1.5.1.2" FT /db_xref="GOA:D2TKX0" FT /db_xref="InterPro:IPR000304" FT /db_xref="InterPro:IPR004455" FT /db_xref="InterPro:IPR008927" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TKX0" FT /protein_id="CBG87211.1" FT /translation="MDKKIGFIGCGNMGKAILGGLIASGQVLPAQIWVYTPSPKKVAAL FT HDQYGINAAQSAQEVAQIADIVFGAVKPAIMIKVLSDITSSLNKESLVVSIAAGVTLDQ FT LARALGHDRKIVRAMPNTPSLVNAGMTSITPNALVTPEDTADVLNIFRCFGEAEVIAES FT MIHPVVGVSGSAPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHP FT GALKDMVCSPGGTTIEAVRVLEERGFRAAVIEAMAKCMEKSEKLSKS" FT misc_feature complement(481689..482432) FT /gene="proC" FT /locus_tag="ROD_04301" FT /note="HMMPfam hit to PF03807, NADP oxidoreductase, FT coenzyme F420-dependent, score 1.2e-97" FT /inference="protein motif:PFAM:PF03807" FT misc_feature complement(481710..481778) FT /note="PS00521 Delta 1-pyrroline-5-carboxylate reductase FT signature." FT /inference="protein motif:Prosite:PS00521" FT misc_feature complement(482319..482420) FT /note="PS00107 Protein kinases ATP-binding region FT signature." FT /inference="protein motif:Prosite:PS00107" FT CDS 482590..483054 FT /transl_table=11 FT /locus_tag="ROD_04311" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR003791" FT /db_xref="UniProtKB/TrEMBL:D2TKX1" FT /protein_id="CBG87212.1" FT /translation="MTIWVDADACPNVIKEILFRAAGRMQLPLILVANQSLRVPPSPFI FT RTLRVPAGFDVADNEIVRQCAAGDLVITADIPLAAEVLAKGAAALNPRGERYSEATIRE FT RLTMRDFMETLRASGVQTGGPDSLSARDRQHFAAELEKWWLEAKRRKENM" FT misc_feature 482590..483027 FT /locus_tag="ROD_04311" FT /note="HMMPfam hit to PF02639, Protein of unknown function FT DUF188, score 3.3e-87" FT /inference="protein motif:PFAM:PF02639" FT CDS 483287..483775 FT /transl_table=11 FT /gene="aroL" FT /locus_tag="ROD_04321" FT /product="shikimate kinase II" FT /EC_number="2.7.1.71" FT /db_xref="GOA:D2TKX2" FT /db_xref="InterPro:IPR000623" FT /db_xref="InterPro:IPR023000" FT /db_xref="UniProtKB/TrEMBL:D2TKX2" FT /protein_id="CBG87213.1" FT /translation="MALAAAIDCRFVDTDQWLQSQAQMTVAEIVEREGWQGFRARETAA FT LEAVTASATVVATGGGIILTPVNRHFMREHGTVIYLRAPVSILVNRLAASPEEALRPAL FT TGKPLSEEVAEVLQQRDALYREAAHFIVDATGSPDQVISEIRHALAQTVQRKQGGVYT" FT misc_feature 483290..483736 FT /gene="aroL" FT /locus_tag="ROD_04321" FT /note="HMMPfam hit to PF01202, Shikimate kinase, score FT 1e-51" FT /inference="protein motif:PFAM:PF01202" FT misc_feature 483401..483475 FT /note="PS01128 Shikimate kinase signature." FT /inference="protein motif:Prosite:PS01128" FT CDS 483803..483994 FT /transl_table=11 FT /locus_tag="ROD_04331" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TKX3" FT /protein_id="CBG87214.1" FT /translation="MPTRPPYPREAYIVTIEKGAPGQTVTWYQLRADHPKPDSLISEHP FT TAEEAMDAKKRYEDPEKS" FT CDS 484253..484930 FT /transl_table=11 FT /gene="aroM" FT /locus_tag="ROD_04351" FT /product="putative chorismate biosynthesis protein" FT /db_xref="InterPro:IPR010843" FT /db_xref="UniProtKB/TrEMBL:D2TKX4" FT /protein_id="CBG87215.1" FT /translation="MSASLAILTIGVVPTSEVLPLLTEYIDEQHITHHSLLGKMSREDV FT LADYALEAGEEPLLTLLNDNELAFVSKKKVERDLQSIIEVLDNQGYDVILLMSTANIQN FT MTARNSILLEPRRIIPPLVASIVEGHQVGVIVPLVELMPTQAEKWQVLPSPPVYALANP FT VHGSAQQLIDAGKELLEQGADVIMLDCLGFHQYHRDVLQKALDVPVLLSNVLIARLAAE FT LLV" FT misc_feature 484262..484927 FT /gene="aroM" FT /locus_tag="ROD_04351" FT /note="HMMPfam hit to PF07302, AroM, score 2.1e-131" FT /inference="protein motif:PFAM:PF07302" FT CDS 484965..485285 FT /transl_table=11 FT /locus_tag="ROD_04361" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR009664" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:D2TKX5" FT /protein_id="CBG87216.1" FT /translation="MEMNLTTRQGQFMLQSNEYFSGKVKSIGFTSSSTGRASVGVMLEG FT EYTFSTAEPEEMTVVSGALNVLLPGATEWQVYAAGEVFNVPGHSEFHLQVAEPTSYLCR FT YL" FT misc_feature 485001..485282 FT /locus_tag="ROD_04361" FT /note="HMMPfam hit to PF06865, Protein of unknown function FT DUF1255, score 5e-64" FT /inference="protein motif:PFAM:PF06865" FT CDS complement(485339..486250) FT /transl_table=11 FT /gene="rdgC" FT /locus_tag="ROD_04371" FT /product="recombination associated protein" FT /db_xref="GOA:D2TKX6" FT /db_xref="InterPro:IPR007476" FT /db_xref="UniProtKB/TrEMBL:D2TKX6" FT /protein_id="CBG87217.1" FT /translation="MLWFKNLMVYRLSRDISLRAEEMEKQLASMTFTPCGSQDMAKMGW FT VPPMGSHSDALTHAHNGQILICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEK FT DSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPV FT VPLALENPIELTLTEWVRSGSVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVH FT IEAGKVVTKLALDWQQRIQFLVCDDGSIKRLKFSDELRDQNEDIDREDFAQRFDADFIL FT MTGELAALIQNLVEGLGGEAQR" FT misc_feature complement(485345..486247) FT /gene="rdgC" FT /locus_tag="ROD_04371" FT /note="HMMPfam hit to PF04381, Putative exonuclease, RdgC, FT score 6.3e-213" FT /inference="protein motif:PFAM:PF04381" FT CDS 486378..487286 FT /transl_table=11 FT /gene="mak" FT /locus_tag="ROD_04381" FT /product="probable manno(fructo)kinase" FT /EC_number="2.7.1.-" FT /db_xref="GOA:D2TKX7" FT /db_xref="InterPro:IPR000600" FT /db_xref="UniProtKB/TrEMBL:D2TKX7" FT /protein_id="CBG87218.1" FT /translation="MRIGIDLGGTKTEVIALGESGEQLFRHRLPTPRNDYRQTIETIAT FT LVEMAEKATGQTGTVGMGIPGSLSPYTGVVKNANSTWLNGQPFDRDVSARLQREVRLAN FT DANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVALNGRAHAGGNGTAGEWGHNPLPWM FT DDDELRYREEVPCYCGKQGCIETFISGTGFATDYQRLSGNSLTGNEIMRRVEEQDPLAE FT LALGRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYNTLPALIGQFVFGGECETPV FT RKALHGDSSGVRGAAWLWPQR" FT misc_feature 486387..486956 FT /gene="mak" FT /locus_tag="ROD_04381" FT /note="HMMPfam hit to PF00480, ROK, score 4.6e-93" FT /inference="protein motif:PFAM:PF00480" FT misc_feature 486747..486779 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 486765..486848 FT /note="PS01125 ROK family signature." FT /inference="protein motif:Prosite:PS01125" FT CDS complement(487320..488468) FT /transl_table=11 FT /gene="araJ" FT /locus_tag="ROD_04391" FT /product="major facilitator superfamily protein" FT /db_xref="GOA:D2TKX8" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TKX8" FT /protein_id="CBG87219.1" FT /translation="MKKVIFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGHMIS FT YYALGVVVGAPVIALLSGRFSLKRILLFLVTLCVIGNAMFTLSSSYPMLAIGRLVSGFP FT HGAFFGVGAIILSKLVRPGKVTAAVAGMVAGMTVANLIGIPLGTFLSHQFSWRYTFLLI FT AVFNIAVIVSILLWVPDLRDERKGKLREQFHFLKSPAPWLIFAATLTGNAGVFAWFSYI FT KPYMIFVSGFPETVMTFIMMLVGLGMVLGNLLSGRLSGRFSPLAIAATTDFVIVLCLLL FT LFFVGGYRVASLTVAFICCAGLFALSAPLQILLLQNARGGELLGAAGGQIAFNLGSAIG FT AYCGGMMLTLGFACNYVALPAALLSFTAMASLLIYGRIQDRQ" FT misc_feature complement(join(487341..487400,487410..487478, FT 487539..487607,487617..487685,487704..487763, FT 487806..487874,487935..488003,488016..488084, FT 488121..488189,488202..488261,488280..488345, FT 488388..488456)) FT /gene="araJ" FT /locus_tag="ROD_04391" FT /note="12 probable transmembrane helices predicted for FT ROD04391 by TMHMM2.0 at aa 5-27, 42-63, 70-89, 94-116, FT 129-151, 156-178, 199-221, 236-255, 262-284, 288-310, FT 331-353 and 357-376" FT misc_feature complement(487407..487439) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(487422..488447) FT /gene="araJ" FT /locus_tag="ROD_04391" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 5.9e-49" FT /inference="protein motif:PFAM:PF07690" FT misc_feature complement(488334..488399) FT /note="Predicted helix-turn-helix motif with score FT 1072.000, SD 2.84 at aa 24-45, sequence FT GVLTELARDVGITIPAAGHMIS" FT sig_peptide complement(488415..488468) FT /gene="araJ" FT /locus_tag="ROD_04391" FT /note="Signal peptide predicted for ROD04391 by SignalP 2.0 FT HMM (Signal peptide probability 0.864) with cleavage site FT probability 0.547 between residues 18 and 19" FT repeat_region complement(488674..490045) FT /note="Insertion sequence ISCro5. Has 13 bp perfect, FT subterminal inverted repeats but no direct repeats. 1 of 5 FT 100% identical ISCro5 elements in CR chromosome, ISCro5 FT includes 7 bp 5' and 3 bp 3' outside of the inverted FT repeats, common to the IS1111 subgroup of the IS110 family. FT Each IS element is flanked by the same 4 bp sequence 5' and FT 7 bp sequence 3' which likely represents its target FT sequence" FT repeat_region 488677..488689 FT /note="13 bp subterminal inverted repeat of ISCro5" FT CDS complement(488951..489961) FT /transl_table=11 FT /locus_tag="ROD_04401" FT /product="ISCro5 transposase" FT /db_xref="GOA:D2THE0" FT /db_xref="InterPro:IPR002525" FT /db_xref="InterPro:IPR003346" FT /db_xref="InterPro:IPR003583" FT /db_xref="UniProtKB/TrEMBL:D2THE0" FT /protein_id="CBG87220.1" FT /translation="MNIKRIGLDLAKLVFQLHGVDHHERVVLRKTLRRSQMLVFFARLE FT PCLIGIEACGSSHYWARELTRLGHSVRIIPPRFVKPYLKGNKNDANDAEAICEAVSRPG FT MRYVAVKSEAQQSMQAEHRVRARLLRDRTALSNEIRGMLGEFGLVLPVGLAALRRALPE FT ILSQQEQWDNRFIRLLCELAEELQILDDRLARYDRRLKQLAQDDDRIRRLQEISGIGPV FT TASALVAAVGNARQFKNGREMAAWLGLVPGQHSSGGKNRLGHISKRGDSYLRTLLIHGA FT RAVLNACGNKEDRRSQWLQSVAERRNRNVATVAMANKNARIAWAVLSREEEYRVM" FT misc_feature complement(489068..489331) FT /locus_tag="ROD_04401" FT /note="HMMPfam hit to PF02371, Transposase, FT IS116/IS110/IS902, score 2.7e-31" FT /inference="protein motif:PFAM:PF02371" FT repeat_region complement(490026..490038) FT /note="13 bp subterminal inverted repeat of ISCro5" FT CDS complement(490048..493191) FT /transl_table=11 FT /gene="sbcC" FT /locus_tag="ROD_04411" FT /product="exonuclease SbcC" FT /db_xref="GOA:D2TKY0" FT /db_xref="InterPro:IPR004592" FT /db_xref="UniProtKB/TrEMBL:D2TKY0" FT /protein_id="CBG87221.1" FT /translation="MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKTT FT LLDAICLALYHKTPRLNTVSQSQNDLMTRDTAECLAEVEFEVKGDAYRAFWSQNRARNQ FT ADGNLQAPRVELARCADGKILADKVKDKLELTAELTGLDYGRFTRSMLLSQGQFAAFLN FT AEPKERAELLEELTGTEIYGQISAMVFEQHKAARSELEKLQAQASSVALLAPEAVQALT FT DSLQALTDEEKQLAARQQSAQQQLNWLTRQNELQTQAQHRQQALLAAQSALQQAQPQLA FT PLSLAQPARALRPLWTRLQEQSAAVSRSQQQINEVKARLQSATTLRSRMRRDAQQQTAA FT MQAARQTLAAWLHEHDRFRVWHSELGGWRALFAQQASDGIQRDRWRQRLAADTQKLAAL FT PVLTLNMTPDEVAVALAQHASQRPLRQRLLALHGQIAPRLQRLAQLQEVLAQSRQALAQ FT RTALLEAKRQQYKEKNQHYQDVKTLCEQEERIKDLESQRALLQSGQPCPLCGSTSHPAV FT AAYQALELSVNQARRDALEKEVKTLADEGAALRGQCDALRQQLQRDESEAQALAKDEQA FT LTVEWQALISNLNITLQPQDDIQPWLTAQEDHEKQLYQLSQRHDLQAQIAAHQQQVTQF FT SQQIEQRQATLTAQLSHYALSLPEEGAEETWLSDRAAEAQTWQQKQDELNELQSRIAQL FT APLLDTLPATDAAAEDGAPVALDNWRQVHDDCLSLQSQLQTLQQQAVLEQQRASDAQAQ FT FAAALESSIFADQSAFLAALLDDEAIARLEQLSQTLESQIQQAQTLATQSAQALAAHQQ FT QPPGFLDCALSVEEIAQALTLLNQQLRDNASRQGEIRQQLKQDADNRQQQQSLMRQIDS FT ASQQVDDWGYLNTLIGSKEGDKFRKFAQGLTLDNLVWLANNQLTRLHGRYLLQRKVSNA FT LELEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLD FT SETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLDRIFAVA" FT misc_feature complement(490078..493188) FT /gene="sbcC" FT /locus_tag="ROD_04411" FT /note="HMMPfam hit to PF02463, SMC protein, N-terminal, FT score 1e-05" FT /inference="protein motif:PFAM:PF02463" FT misc_feature complement(490165..490188) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(493060..493083) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(493188..494390) FT /transl_table=11 FT /gene="sbcD" FT /locus_tag="ROD_04421" FT /product="exonuclease SbcD" FT /db_xref="GOA:D2TKY1" FT /db_xref="InterPro:IPR004593" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/TrEMBL:D2TKY1" FT /protein_id="CBG87222.1" FT /translation="MRLLHTSDWHLGQNFYSKSRAAEHQAFLDWLLSTATEQQVDAIIV FT AGDIFDTGSPPSYARELYNRFVVRLQQTGCHLVVLAGNHDSVATLNESREILAFLNTTV FT VASAGCAPHILHRRDGTPGAVLCPIPFLRPRDIVTSQAGLSGQEKQQHLLSAITDYYQQ FT QYHEACALRGERALPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGH FT IHRAQKIGGTEHIRYCGSPIALSFDECGKSKCVHLVSFENGRLMSVESLTVPITQPLAV FT LKGDLAAISEQLEQWRDSRQSPPVWLDIEITTDEYLHDIQRKIQALTETLPVEVLLVRR FT SREQRESMLSSERRETLSELSVDEVFERRLAQVELAEPQRQRLTALFHTTVQALAGEDV FT A" FT misc_feature complement(493713..494390) FT /gene="sbcD" FT /locus_tag="ROD_04421" FT /note="HMMPfam hit to PF00149, Metallophosphoesterase, FT score 1e-19" FT /inference="protein motif:PFAM:PF00149" FT misc_feature complement(494061..494093) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 494580..495269 FT /transl_table=11 FT /gene="phoB" FT /locus_tag="ROD_04431" FT /product="phosphate regulon two-component system, response FT regulator" FT /db_xref="GOA:D2TKY2" FT /db_xref="InterPro:IPR001789" FT /db_xref="InterPro:IPR001867" FT /db_xref="InterPro:IPR011006" FT /db_xref="InterPro:IPR011879" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TKY2" FT /protein_id="CBG87223.1" FT /translation="MARRILVVEDEAAIREMVCFVLEQNGFQPVEAEDYDTAVNQLNEP FT WPDLILLDWMLPGGSGLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYIT FT KPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMTGDNPLDMGPTEFKLL FT HFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALETSGHDRMVQTVRGTG FT YRFSTRF" FT misc_feature 494586..494930 FT /gene="phoB" FT /locus_tag="ROD_04431" FT /note="HMMPfam hit to PF00072, Response regulator receiver, FT score 5.2e-41" FT /inference="protein motif:PFAM:PF00072" FT misc_feature 495027..495254 FT /gene="phoB" FT /locus_tag="ROD_04431" FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C-terminal, score 1e-25" FT /inference="protein motif:PFAM:PF00486" FT CDS 495321..496628 FT /transl_table=11 FT /gene="phoR" FT /locus_tag="ROD_04441" FT /product="phosphate regulon two-component system, sensor FT kinase" FT /db_xref="GOA:D2TKY3" FT /db_xref="InterPro:IPR000014" FT /db_xref="InterPro:IPR003594" FT /db_xref="InterPro:IPR003661" FT /db_xref="InterPro:IPR004358" FT /db_xref="InterPro:IPR005467" FT /db_xref="InterPro:IPR009082" FT /db_xref="InterPro:IPR013767" FT /db_xref="InterPro:IPR014310" FT /db_xref="InterPro:IPR021766" FT /db_xref="UniProtKB/TrEMBL:D2TKY3" FT /protein_id="CBG87224.1" FT /translation="MLERLSWKRLVLELILCCIPAFILSAFFGYLPWFLLASVTGLLIW FT HFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGA FT ESLPDAVVLTTEEGGIFWCNGLAQQLLGLRWPDDNGQNILNLLRYPEFTQYLKTRDFSR FT PLNLVLNTGRHLEIRVMPYTDKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVL FT QGYLEMMHEQPLEGSTREKALLTMREQTFRMEGLVKQLLTLSKIEASPVLLLNEQVDVP FT MMLHMVEREAQTLSQQKHTFSFDIDNQLKVLGNEEQLRSAISNLVYNAVNHTPEGTHIT FT VCWRAVPHGAEFSIEDNGPGIAAEHLPRLTERFYRVDKARSRQTGGSGLGLAIVKHALN FT HHESRLTIDSEPGKGTRFSFVLPERLIARKPPDRRL" FT misc_feature 495354..495422 FT /gene="phoR" FT /locus_tag="ROD_04441" FT /note="1 probable transmembrane helix predicted for FT ROD04441 by TMHMM2.0 at aa 12-34" FT misc_feature 495612..495902 FT /gene="phoR" FT /locus_tag="ROD_04441" FT /note="HMMPfam hit to PF00989, PAS fold, score 1.1e-18" FT /inference="protein motif:PFAM:PF00989" FT misc_feature 495927..496127 FT /gene="phoR" FT /locus_tag="ROD_04441" FT /note="HMMPfam hit to PF00512, Histidine kinase A, FT N-terminal, score 3.3e-21" FT /inference="protein motif:PFAM:PF00512" FT misc_feature 496257..496592 FT /gene="phoR" FT /locus_tag="ROD_04441" FT /note="HMMPfam hit to PF02518, ATP-binding region, FT ATPase-like, score 2.6e-43" FT /inference="protein motif:PFAM:PF02518" FT CDS 497023..498342 FT /transl_table=11 FT /gene="brnQ" FT /locus_tag="ROD_04451" FT /product="branched chain amino acid transport system II FT carrier protein" FT /db_xref="GOA:D2TKY4" FT /db_xref="InterPro:IPR004685" FT /db_xref="UniProtKB/TrEMBL:D2TKY4" FT /protein_id="CBG87225.1" FT /translation="MTHQLKSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAA FT FGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTAT FT VSFEVGIAPLTGDSAMPLFIYSVIYFALVILVSLYPGKLLDTVGNFLAPLKIIALIVLS FT VAAIIWPAGPISHAMEAYENAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTESR FT LLTRYTVWAGLMAGVGLTLLYLALFRLGSDSATLVDQSVNGAAILHAYVQHTFGGAGSL FT LLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRSLVFILGGFSMVVSNLGLSHLIQIS FT IPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPAMFISLLFGILDGIKASAIGDVLPAW FT TQRLPLAEQGLAWLIPTVVIVVLAIIWDRAAGRQVTSGAH" FT sig_peptide 497023..497094 FT /gene="brnQ" FT /locus_tag="ROD_04451" FT /note="Signal peptide predicted for ROD04451 by SignalP 2.0 FT HMM (Signal peptide probability 0.823) with cleavage site FT probability 0.742 between residues 24 and 25" FT misc_feature 497038..498312 FT /gene="brnQ" FT /locus_tag="ROD_04451" FT /note="HMMPfam hit to PF05525, Branched-chain amino acid FT transport system II carrier protein, score 3.9e-240" FT /inference="protein motif:PFAM:PF05525" FT misc_feature join(497059..497127,497143..497211,497248..497316, FT 497374..497442,497461..497529,497587..497655, FT 497689..497757,497848..497916,497935..498003, FT 498031..498099,498133..498201,498244..498300) FT /gene="brnQ" FT /locus_tag="ROD_04451" FT /note="12 probable transmembrane helices predicted for FT ROD04451 by TMHMM2.0 at aa 13-35, 41-63, 76-98, 118-140, FT 147-169, 189-211, 223-245, 276-298, 305-327, 337-359, FT 371-393 and 408-426" FT misc_feature 497863..497895 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 497896..497928 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 498421..499788 FT /transl_table=11 FT /gene="proY" FT /locus_tag="ROD_04461" FT /product="proline-specific permease" FT /db_xref="GOA:D2TKY5" FT /db_xref="InterPro:IPR002293" FT /db_xref="InterPro:IPR004840" FT /db_xref="InterPro:IPR004841" FT /db_xref="UniProtKB/TrEMBL:D2TKY5" FT /protein_id="CBG87226.1" FT /translation="MESNNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVL FT LAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAI FT ADVTAFGIYMGVWFPAVPHWIWVLSVVLLICAINLMSVKVFGELEFWFSFFKVATIIIM FT IVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITA FT GEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITF FT AASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKVFAKTSRRGIPWVTVLVMTI FT ALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVRALKFKVP FT GGVATTVVGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKRRHDRQLAQ" FT sig_peptide 498421..498528 FT /gene="proY" FT /locus_tag="ROD_04461" FT /note="Signal peptide predicted for ROD04461 by SignalP 2.0 FT HMM (Signal peptide probability 0.943) with cleavage site FT probability 0.472 between residues 36 and 37" FT misc_feature 498463..499785 FT /gene="proY" FT /locus_tag="ROD_04461" FT /note="HMMPfam hit to PF00324, Amino acid FT permease-associated region, score 6.2e-134" FT /inference="protein motif:PFAM:PF00324" FT misc_feature join(498466..498522,498550..498609,498667..498735, FT 498778..498846,498880..498948,499006..499074, FT 499135..499203,499246..499314,499405..499473, FT 499486..499554,499615..499683,499696..499755) FT /gene="proY" FT /locus_tag="ROD_04461" FT /note="12 probable transmembrane helices predicted for FT ROD04461 by TMHMM2.0 at aa 16-34, 44-63, 83-105, 120-142, FT 154-176, 196-218, 239-261, 276-298, 329-351, 356-378, FT 399-421 and 426-445" FT misc_feature 498538..498630 FT /note="PS00218 Amino acid permeases signature." FT /inference="protein motif:Prosite:PS00218" FT CDS 499965..501782 FT /transl_table=11 FT /gene="malZ" FT /locus_tag="ROD_04481" FT /product="maltodextrin glucosidase" FT /db_xref="GOA:D2TKY6" FT /db_xref="InterPro:IPR004185" FT /db_xref="InterPro:IPR006047" FT /db_xref="InterPro:IPR006589" FT /db_xref="InterPro:IPR013780" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014756" FT /db_xref="InterPro:IPR015902" FT /db_xref="InterPro:IPR017069" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/TrEMBL:D2TKY6" FT /protein_id="CBG87227.1" FT /translation="MLNAWHLPVAPFVKQNKDKLSITLWLSGENPPQGVTLRAEHDNEE FT TSLVMRKLRSQPYPGITAWRAVVDLSGGQPRRRYSFKLLWHDRQRWFTPQGFSPFPPAR FT LEQFAVDVPDNGPQWVADQIFYQIFPDRFARSEPREEQQDKVYFHHAAGREVILRDWDD FT PLSAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFVAPSVHKYDTEDYRHVDPQ FT FGGDAALMRLRHNTRQRGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWY FT SFSAEGVALDWLGYPSLPKLDYQSDGLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHM FT LGEGGGARNNLRHVAGITQAVKETQPQAYIVGEHFGDARQWLQADAEDAAMNYRGFTFP FT LWGFLANTDISYDPQQIDAQSCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKSLLGK FT DVARLPLAVVWLFSWPGVPCIYYGDEVGLDGNNDPFCRKTFPWQAEKQDAALFALYQRM FT AKLRQRSQELRYGGCQVIYAEDNVVVFLRVYNQQRVLVAINRGEACEVVLPASPLLNVK FT TWQLKEGKADLQDGVLTLPAISAAVWFGH" FT misc_feature 500343..501527 FT /gene="malZ" FT /locus_tag="ROD_04481" FT /note="HMMPfam hit to PF00128, Glycosyl hydrolase, family FT 13, catalytic region, score 1.2e-109" FT /inference="protein motif:PFAM:PF00128" FT CDS 501889..504528 FT /transl_table=11 FT /locus_tag="ROD_04491" FT /product="putative exported protein" FT /db_xref="InterPro:IPR019286" FT /db_xref="UniProtKB/TrEMBL:D2TKY7" FT /protein_id="CBG87228.1" FT /translation="MDDLLILGCIVLLFALVVAPALAIVAFNRSSATRAELAGLRRRVE FT ELEQQGIGKPKDVPAAQMPVQSAETFVKRGSVAQATPEPTTSWEAHRPPEAAKRAPLPT FT PTRAAEKQPSAFGGVITSLARWFMQGNPLAKLGILLLFLGLSFLLRYTVEHSLFPLELR FT LAATALFAIVLLGVGWRLRHKQPVYALILQGGATGVLYLTVFGAFRLWQMLPMTLAFAL FT LLAICAASVVLAILQKALSLAMLASLGGYLAPLLLSDGSGNYIALFSFYLLLSAGILVI FT SIWQHWRELNLLGLLFTFGVGGLWGMDDYQPAYYLNCQLFLVANILIFGVLSVALSLRA FT QEKNKQIIDGVLLFAPPLIGFGMQYAMTLHWAYGPALSALGYGGGYLALAWLALRRYPS FT AGRPLVLAALALGGAFTTLAIPLALSARWTAMAWALEGLGILWLGVQQQQRSMSYSGTA FT LLVLAFVSALWALIGDTTALSLMLIFAVLSLCWLAGAWLWRQIILRGSRVLLAGGLLFW FT MVALTGASQLMFSKDAWVLSGVLALMAVSVWGWRQAGLRLAWRELDASKWLLWPMMLMV FT LLQQISQQAIFTGGWQNLVWCLALPAALILLRRDDAALAPRISRLLHLSLLWMTMLALA FT MELFWFVRDLPWGMTAWKSGLLMAAGGLLIMLISAMVRRRIWPFKVWPALYSVQAMVPL FT AAALVCLLALTNVQDGVVYRQTFLPLVNPLEEGAAFALLGLVVLYRATQRYFPVQLSVW FT QPWPAIALMALGFWWLNGALLRALACYGEVAWTTQALWHSRLVQTCFALFWTLVALVVM FT LRATQRRSRPEWLGGAVLLGMVIAKLMLVDSAGGGGLARAVAFIGVAVLVLIVGYFSPL FT PPKAGENK" FT sig_peptide 501889..501957 FT /locus_tag="ROD_04491" FT /note="Signal peptide predicted for ROD04491 by SignalP 2.0 FT HMM (Signal peptide probability 0.938) with cleavage site FT probability 0.770 between residues 23 and 24" FT misc_feature join(501898..501966,502285..502344,502372..502425, FT 502444..502512,502525..502593,502606..502659, FT 502672..502740,502753..502806,502834..502902, FT 502936..502989,503002..503070,503089..503157, FT 503170..503223,503242..503301,503314..503382, FT 503407..503475,503485..503538,503740..503808, FT 503851..503904,503941..504009,504037..504105, FT 504142..504210,504253..504321,504358..504411, FT 504427..504495) FT /locus_tag="ROD_04491" FT /note="25 probable transmembrane helices predicted for FT ROD04491 by TMHMM2.0 at aa 4-26, 133-152, 162-179, 186-208, FT 213-235, 240-257, 262-284, 289-306, 316-338, 350-367, FT 372-394, 401-423, 428-445, 452-471, 476-498, 507-529, FT 533-550, 618-640, 655-672, 685-707, 717-739, 752-774, FT 789-811, 824-841 and 847-869" FT CDS 504525..505916 FT /transl_table=11 FT /locus_tag="ROD_04501" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TKY8" FT /protein_id="CBG87229.1" FT /translation="MKWMKALLCSALLSAAGTVAGSDEAKESPVDYATGVMLETTGASP FT WYRLPLPQTVYEGSAWPDLRDVRVFNHAGETVPFALVAQKAQPVTPETMKLRLFPLDMS FT PVAAREQGRQGESFVLRSKAGIEIQLNSDEVNASGQSYLLTLPEARQEPFSLAQLRLDW FT RPPAGNWQGKASIYSSRDLRYWRSILEDAPLMDLTREGDRLKMDTISARLTLSTQGNRY FT LLVILDAQSPALTINSVSAIADSRAPESERVVIGAQEHRVSDEEALWRWKQPQPLSSLS FT IALQNEGVLPVALAWRSEENAAWQPLTKTVLYRLDGQRSQDIALSGQEVEAVRITTINA FT RLPETLPAVSGARDSYQLVFNAQGKGPYMLAWGNRAAIRADIELDRLIPASLRKTHALN FT DLPWAIPQQSVTPGGEARLSATSAAERQSQWQTLLVWGALILGVAVLALMAFRIWREVK FT KDGGA" FT sig_peptide 504525..504587 FT /locus_tag="ROD_04501" FT /note="Signal peptide predicted for ROD04501 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.514 between residues 21 and 22" FT misc_feature 505818..505886 FT /locus_tag="ROD_04501" FT /note="1 probable transmembrane helix predicted for FT ROD04501 by TMHMM2.0 at aa 432-454" FT CDS complement(505966..506568) FT /transl_table=11 FT /locus_tag="ROD_04511" FT /product="probable peroxidase" FT /db_xref="GOA:D2TKY9" FT /db_xref="InterPro:IPR000866" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR019479" FT /db_xref="InterPro:IPR024706" FT /db_xref="UniProtKB/TrEMBL:D2TKY9" FT /protein_id="CBG87230.1" FT /translation="MVLVTRQAPDFTAAAVLGSGEIVENFNFKQHTNGKATVLFFWPMD FT FTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGAVKYAMVA FT DVKREIQKAYGIEHPEAGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQF FT HEEHGEVCPAQWEKGKEGMNASPDGVAKYLTENVSSL" FT misc_feature complement(506149..506559) FT /locus_tag="ROD_04511" FT /note="HMMPfam hit to PF00578, Alkyl hydroperoxide FT reductase/ Thiol specific antioxidant/ Mal allergen, score FT 7.4e-46" FT /inference="protein motif:PFAM:PF00578" FT CDS complement(506953..507534) FT /transl_table=11 FT /gene="acpH" FT /locus_tag="ROD_04521" FT /product="acyl carrier protein phosphodiesterase" FT /EC_number="3.1.4.14" FT /db_xref="GOA:D2TKZ0" FT /db_xref="InterPro:IPR007431" FT /db_xref="InterPro:IPR023491" FT /db_xref="UniProtKB/TrEMBL:D2TKZ0" FT /protein_id="CBG87231.1" FT /translation="MNFLAHLHLAHLADSSLSGNLLADFVRGNPETHFPPEVVEGILMH FT RRIDVLTDNLPEVREAREWFRRETRRVAPITLDVMWDHFLSRHWAQISPDFPLPAFVGY FT ARTQIATILPDSPPRFVNLNHHLWSEQWLERYRDMAFIQNVLNGMASRRPRLEALRDSW FT HDLDRHYDALEERFWRFYPQMMDQARQKTL" FT misc_feature complement(506959..507480) FT /gene="acpH" FT /locus_tag="ROD_04521" FT /note="HMMPfam hit to PF04336, Protein of unknown function FT DUF479, score 3.6e-114" FT /inference="protein motif:PFAM:PF04336" FT CDS 507627..508697 FT /transl_table=11 FT /gene="queA" FT /locus_tag="ROD_04531" FT /product="S-adenosylmethionine:tRNA FT ribosyltransferase-isomerase" FT /db_xref="GOA:D2TKZ1" FT /db_xref="InterPro:IPR003699" FT /db_xref="UniProtKB/TrEMBL:D2TKZ1" FT /protein_id="CBG87232.1" FT /translation="MRVTDFSFELPESLIAHYPQPERSSCRLLSLDGPTGALTHGTFTD FT LLAKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPG FT AELLLGDDESINATMTARHGALFEVEFNDARPVLDILNAIGHMPLPPYIDRPDEDADRE FT LYQTVYSEKPGAVAAPTAGLHFDEPLLAALREKGIEMAFVTLHVGAGTFQPVRVDSIED FT HIMHSEYAEVPQEVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKSDLIEPFFGDTQ FT IFIYPGYQYKVIDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEQKYRFFSYGDA FT MFITYNPQALHERVGE" FT misc_feature 507627..508277 FT /gene="queA" FT /locus_tag="ROD_04531" FT /note="HMMPfam hit to PF02547, Queuosine biosynthesis FT protein, score 3.3e-150" FT /inference="protein motif:PFAM:PF02547" FT CDS 508750..509877 FT /transl_table=11 FT /gene="tgt" FT /locus_tag="ROD_04541" FT /product="queuine tRNA-ribosyltransferase" FT /EC_number="2.4.2.29" FT /db_xref="GOA:D2TKZ2" FT /db_xref="InterPro:IPR002616" FT /db_xref="InterPro:IPR004803" FT /db_xref="UniProtKB/TrEMBL:D2TKZ2" FT /protein_id="CBG87233.1" FT /translation="MKFELDTTDGRARRGRLVFDRGVVETPAFMPVGTYGTVKGMTPEE FT VEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIRKI FT TEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSMEMSL FT RWAKRSRERFDSLGNKNALFGIIQGSVYEDLRDISVKALVEIGFDGYAVGGLAVGEPKE FT DMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTD FT GVVKIRNAKYKSDTSPLDAECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHNLRYYQR FT LMAGLRKAIEEGKLESFVTGFYQRQGRPVPPLNVD" FT misc_feature 509122..509838 FT /gene="tgt" FT /locus_tag="ROD_04541" FT /note="HMMPfam hit to PF01702, Queuine/other FT tRNA-ribosyltransferase, score 5.3e-171" FT /inference="protein motif:PFAM:PF01702" FT CDS 509900..510232 FT /transl_table=11 FT /locus_tag="ROD_04551" FT /product="putative preprotein translocase subunit" FT /db_xref="InterPro:IPR003849" FT /db_xref="UniProtKB/TrEMBL:D2TKZ3" FT /protein_id="CBG87234.1" FT /translation="MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQKR FT TKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAETGYIAIALNDTTEVVIKRDFVAAVLPK FT GTMKAL" FT misc_feature 509954..510205 FT /locus_tag="ROD_04551" FT /note="HMMPfam hit to PF02699, YajC, score 1.6e-47" FT /inference="protein motif:PFAM:PF02699" FT misc_feature 509957..510016 FT /locus_tag="ROD_04551" FT /note="1 probable transmembrane helix predicted for FT ROD04551 by TMHMM2.0 at aa 20-39" FT CDS 510260..512107 FT /transl_table=11 FT /gene="secD" FT /locus_tag="ROD_04561" FT /product="protein-export protein" FT /db_xref="GOA:D2TKZ4" FT /db_xref="InterPro:IPR005791" FT /db_xref="InterPro:IPR022645" FT /db_xref="InterPro:IPR022646" FT /db_xref="InterPro:IPR022813" FT /db_xref="UniProtKB/TrEMBL:D2TKZ4" FT /protein_id="CBG87235.1" FT /translation="MLNRYPLWKYIMLIVVIIVGLLYALPNLYGEDPAVQITGARGVAA FT SEQTLIQVQNTLQQEKITAKSVALEEGAILARFDTTDTQLRAREALVGVLGDKYVVALN FT LAPATPRWLAAIKAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI FT PYTTVRKEDNYGLSINFRDASARDEAIAYLSKRHQDLVISSQGSNALRAVMTDARLSEA FT REYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEF FT RLVNTNVDQAAAASGRVPGDSEVKQMREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQ FT VNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQ FT SRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACL FT AGLAVSILFMVLFYKKFGLIATSALIANLVLIVGVMSLLPGATLSMPGIAGIVLTLAVA FT VDANVLINERIKEELSNGRSIQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIK FT GFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI" FT sig_peptide 510260..510349 FT /gene="secD" FT /locus_tag="ROD_04561" FT /note="Signal peptide predicted for ROD04561 by SignalP 2.0 FT HMM (Signal peptide probability 0.665) with cleavage site FT probability 0.513 between residues 30 and 31" FT misc_feature join(510278..510346,511613..511672,511685..511753, FT 511766..511834,511895..511963,512006..512074) FT /gene="secD" FT /locus_tag="ROD_04561" FT /note="6 probable transmembrane helices predicted for FT ROD04561 by TMHMM2.0 at aa 7-29, 452-471, 476-498, 503-525, FT 546-568 and 583-605" FT misc_feature 510593..510688 FT /gene="secD" FT /locus_tag="ROD_04561" FT /note="HMMPfam hit to PF07549, SecD/SecF/SecDF export FT membrane protein, score 6.1e-06" FT /inference="protein motif:PFAM:PF07549" FT misc_feature 511214..511255 FT /note="PS00761 Signal peptidases I signature 3." FT /inference="protein motif:Prosite:PS00761" FT misc_feature 511523..512068 FT /gene="secD" FT /locus_tag="ROD_04561" FT /note="HMMPfam hit to PF02355, SecD/SecF/SecDF export FT membrane protein, score 5.8e-06" FT /inference="protein motif:PFAM:PF02355" FT CDS 512118..513089 FT /transl_table=11 FT /gene="secF" FT /locus_tag="ROD_04571" FT /product="protein-export protein" FT /db_xref="GOA:D2TKZ5" FT /db_xref="InterPro:IPR005665" FT /db_xref="InterPro:IPR022645" FT /db_xref="InterPro:IPR022646" FT /db_xref="InterPro:IPR022813" FT /db_xref="UniProtKB/TrEMBL:D2TKZ5" FT /protein_id="CBG87236.1" FT /translation="MAQEYTVEQLNHGRKVWDFMRWDYWAFGISGLLLVASIVVMGVRG FT FNWGLDFTGGTVIEITLEKPAEMDVMREALEKAGFVDPLLQNFGSSHDIMVRMPPTEGA FT NGGQVLGSKVLSVINESTNQNAAVKRIEFVGPSVGADLAQTGAMALLAALISILVYVGF FT RFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIR FT ENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLFLFGGPVLEGFSLTMLIGV FT SIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP" FT misc_feature join(512187..512255,512544..512603,512622..512690, FT 512700..512768,512859..512927,512940..513008) FT /gene="secF" FT /locus_tag="ROD_04571" FT /note="6 probable transmembrane helices predicted for FT ROD04571 by TMHMM2.0 at aa 24-46, 143-162, 169-191, FT 195-217, 248-270 and 275-297" FT misc_feature 512235..512321 FT /gene="secF" FT /locus_tag="ROD_04571" FT /note="HMMPfam hit to PF07549, SecD/SecF/SecDF export FT membrane protein, score 0.00037" FT /inference="protein motif:PFAM:PF07549" FT misc_feature 512457..513023 FT /gene="secF" FT /locus_tag="ROD_04571" FT /note="HMMPfam hit to PF02355, SecD/SecF/SecDF export FT membrane protein, score 2.8e-94" FT /inference="protein motif:PFAM:PF02355" FT CDS 513241..513606 FT /transl_table=11 FT /locus_tag="ROD_04581" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TKZ6" FT /protein_id="CBG87237.1" FT /translation="MKSIINWFEIPVADMARAIAFYEPVLGLSLRREKMDGADLAVFPY FT EDPATGGALAKIDGLLPSAQGAVIYLHTDDLAAALERVVSAGGECVFGPLDLGKEIGTV FT ALFIDSEGNRVGLHQPA" FT misc_feature 513250..513591 FT /locus_tag="ROD_04581" FT /note="HMMPfam hit to PF00903, Glyoxalase/bleomycin FT resistance protein/dioxygenase, score 2.6e-10" FT /inference="protein motif:PFAM:PF00903" FT CDS 513622..514302 FT /transl_table=11 FT /locus_tag="ROD_04591" FT /product="putative DeoR-family transcriptional regulator" FT /db_xref="GOA:D2TKZ7" FT /db_xref="InterPro:IPR001034" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR013196" FT /db_xref="UniProtKB/TrEMBL:D2TKZ7" FT /protein_id="CBG87238.1" FT /translation="MTRRADRLFQIVQILRGRRLTTAALLAERLGVSERTIYRDIRDLS FT LSGVPVEGEAGSGYRLMAGFDLPPLMLTHRESEALIVAIRLLHTWGGKLLSRELESAQE FT KVLAILPEEGRRKAEQARIFAPDLGTQPHSRSAFDRIHRAISAQQVLALHYRDEAGQLT FT WREVQPLGMFFWGEHWLLVAWCERRDDYRCFRLDRCLRITLTERRFRESADRSLADFLR FT KVRA" FT misc_feature 513640..513801 FT /locus_tag="ROD_04591" FT /note="HMMPfam hit to PF08279, Helix-turn-helix, type 11, FT score 7.3e-21" FT /inference="protein motif:PFAM:PF08279" FT misc_feature 513682..513747 FT /note="Predicted helix-turn-helix motif with score FT 1969.000, SD 5.89 at aa 21-42, sequence FT TTAALLAERLGVSERTIYRDIR" FT CDS complement(514360..515214) FT /transl_table=11 FT /gene="tsx" FT /locus_tag="ROD_04601" FT /product="nucleoside-specific channel-forming protein" FT /db_xref="GOA:D2TKZ8" FT /db_xref="InterPro:IPR003055" FT /db_xref="InterPro:IPR018013" FT /db_xref="UniProtKB/TrEMBL:D2TKZ8" FT /protein_id="CBG87239.1" FT /translation="MKKTLLAAGAVLALSSTFTVNAAENDKPQYLSDWWHQSVNVVGSY FT HTRFGPTLRNDTYLEYEAFAKKDWFDFYGYVDAPRFFGGDSNSRGIWNHGSPLFMEIEP FT RFSIDKLTNSDLSFGPFKEWYFANNYIYDMGRNSEGRQSTWYMGLGTDVDTGLPMSLSL FT NVYAKYQWQNYGASNENEWDGYRFKVKYFVPITELWGGNLSYIGFTNFDWGSDLGDDQY FT RTSNSIASSHILALNYDHWHYSVVARYFHNGGQWKDGDEPVWQAEPIKSNGFGWYLVVG FT YNF" FT misc_feature complement(514600..515052) FT /gene="tsx" FT /locus_tag="ROD_04601" FT /note="HMMPfam hit to PF03502, Nucleoside-specific FT channel-forming protein, Tsx, score 1.5e-109" FT /inference="protein motif:PFAM:PF03502" FT sig_peptide complement(515149..515214) FT /gene="tsx" FT /locus_tag="ROD_04601" FT /note="Signal peptide predicted for ROD04601 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT CDS complement(515512..516021) FT /transl_table=11 FT /locus_tag="ROD_04611" FT /product="putative lipoprotein" FT /db_xref="InterPro:IPR021658" FT /db_xref="UniProtKB/TrEMBL:D2TKZ9" FT /protein_id="CBG87240.1" FT /translation="MGSLFSLTACAQQSEVRQMHQSISTLNKEMQQLNQETVKINQQNS FT LNVKSDRGVYLLPGSNTPARLNSQIGMLRMSLVNITPNADGMRATLRIQGESSDPLPAF FT SGTVEYGQLQGTTDNYQEVNVQNQLINAPASVLAPSDVDIPLQLNGMTAEQTGFIRIHD FT IQPVTQ" FT CDS 516204..516653 FT /transl_table=11 FT /gene="nrdR" FT /locus_tag="ROD_04621" FT /product="transcriptional repressor" FT /db_xref="GOA:D2TL00" FT /db_xref="InterPro:IPR003796" FT /db_xref="InterPro:IPR005144" FT /db_xref="UniProtKB/TrEMBL:D2TL00" FT /protein_id="CBG87241.1" FT /translation="MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAE FT LVMPRVVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMALNHIKSQLRATGEREVP FT SKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLQD" FT misc_feature 516348..516620 FT /gene="nrdR" FT /locus_tag="ROD_04621" FT /note="HMMPfam hit to PF03477, ATP-cone, score 4.2e-35" FT /inference="protein motif:PFAM:PF03477" FT CDS 516657..517760 FT /transl_table=11 FT /gene="ribD" FT /locus_tag="ROD_04631" FT /product="riboflavin biosynthesis protein" FT /db_xref="GOA:D2TL01" FT /db_xref="InterPro:IPR002125" FT /db_xref="InterPro:IPR002734" FT /db_xref="InterPro:IPR004794" FT /db_xref="InterPro:IPR011549" FT /db_xref="InterPro:IPR016192" FT /db_xref="InterPro:IPR016193" FT /db_xref="InterPro:IPR024072" FT /db_xref="UniProtKB/TrEMBL:D2TL01" FT /protein_id="CBG87242.1" FT /translation="MQDELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYR FT AGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGMARVVAAMQDPN FT PQVAGRGLYRLQQAGIEVSHGLMMSEAEALNKGFLKRMRTGFPYVQLKLGASLDGRTAM FT ASGESQWITSPQARRDVQRLRAQSHAILTSSETVLADDPQLTVRWSELGEATQAAYPQE FT NLRQPVRIVIDSRNRVTPEHRIVSQPGETWFARTKEDDRVWPESVRTIQVPEHNGHLDL FT VLLLMLLGKQQINSLWVEAGPTLAGALLQAGVVDELIMYVAPKLLGSDARGLCVLPGLE FT KLADAPQFQFKEIRYTGPDVCLHLIPA" FT misc_feature 516657..516956 FT /gene="ribD" FT /locus_tag="ROD_04631" FT /note="HMMPfam hit to PF00383, CMP/dCMP deaminase, FT zinc-binding, score 1.2e-45" FT /inference="protein motif:PFAM:PF00383" FT misc_feature 516804..516920 FT /note="PS00903 Cytidine and deoxycytidylate deaminases FT zinc-binding region signature." FT /inference="protein motif:Prosite:PS00903" FT misc_feature 517095..517742 FT /gene="ribD" FT /locus_tag="ROD_04631" FT /note="HMMPfam hit to PF01872, Bacterial bifunctional FT deaminase-reductase, C-terminal, score 3.8e-89" FT /inference="protein motif:PFAM:PF01872" FT CDS 517850..518320 FT /transl_table=11 FT /gene="ribH" FT /locus_tag="ROD_04641" FT /product="6,7-dimethyl-8-ribityllumazine synthase FT (riboflavin synthase beta chain)" FT /EC_number="2.5.1.9" FT /db_xref="GOA:D2TL02" FT /db_xref="InterPro:IPR002180" FT /db_xref="UniProtKB/TrEMBL:D2TL02" FT /protein_id="CBG87243.1" FT /translation="MNIIEANVATPDARVAITIARFNNFINDSLLEGAVDALKRIGQVK FT DENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLAHV FT AQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA" FT misc_feature 517877..518311 FT /gene="ribH" FT /locus_tag="ROD_04641" FT /note="HMMPfam hit to PF00885, FT 6,7-dimethyl-8-ribityllumazine synthase, score 5.4e-92" FT /inference="protein motif:PFAM:PF00885" FT CDS 518340..518759 FT /transl_table=11 FT /gene="nusB" FT /locus_tag="ROD_04651" FT /product="N utilization substance protein B" FT /db_xref="GOA:D2TL03" FT /db_xref="InterPro:IPR006027" FT /db_xref="InterPro:IPR011605" FT /db_xref="UniProtKB/TrEMBL:D2TL03" FT /protein_id="CBG87244.1" FT /translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDV FT MYFRELLSGVATNSAYLDGLMKPYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAI FT NEAIELAKTFGAEDSHKFVNGVLDKAAPVIRPNKK" FT misc_feature 518358..518741 FT /gene="nusB" FT /locus_tag="ROD_04651" FT /note="HMMPfam hit to PF01029, NusB/RsmB/TIM44, score FT 1.8e-49" FT /inference="protein motif:PFAM:PF01029" FT CDS 518837..519814 FT /transl_table=11 FT /gene="thiL" FT /locus_tag="ROD_04661" FT /product="thiamine-monophosphate kinase" FT /EC_number="2.7.4.16" FT /db_xref="GOA:D2TL04" FT /db_xref="InterPro:IPR000728" FT /db_xref="InterPro:IPR006283" FT /db_xref="InterPro:IPR010918" FT /db_xref="InterPro:IPR016188" FT /db_xref="UniProtKB/TrEMBL:D2TL04" FT /protein_id="CBG87245.1" FT /translation="MACGEFSLIARYFDRVRSSRRDVETGIGDDCALLNIPEKQTLAIS FT TDTLVAGNHFMPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPEVDEAWLETFS FT DSLFDLLNYYDMQLIGGDTTRGPLSMTLGIHGYVPVGRALKRAGAKPGDWIYVTGTPGD FT SAAGLAILQNRLQVADDVDNAYLLQRHLRPTPRILQGQALRDLASAAIDLSDGLISDLG FT HIVKASACGARIDVDALPYSQAMLRHVGAEQALRWALSGGEDYELCFTVPELNRGALDV FT ALAHLGVPFTCIGQMSADVEGICFIRDGEPVTFDWKGYDHFAAL" FT misc_feature 519284..519757 FT /gene="thiL" FT /locus_tag="ROD_04661" FT /note="HMMPfam hit to PF02769, AIR synthase related FT protein, C-terminal, score 3.4e-05" FT /inference="protein motif:PFAM:PF02769" FT CDS 519792..520307 FT /transl_table=11 FT /gene="pgpA" FT /locus_tag="ROD_04671" FT /product="phosphatidylglycerophosphatase A" FT /EC_number="3.1.3.27" FT /db_xref="GOA:D2TL05" FT /db_xref="InterPro:IPR007686" FT /db_xref="UniProtKB/TrEMBL:D2TL05" FT /protein_id="CBG87246.1" FT /translation="MTILPRSKDVAKSRLSLANPWHLLATGFGSGLSPVVPGTMGSLAA FT IPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITLMA FT LPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMVDDIVAGVISAGILYFIG FT HHWPIGAI" FT misc_feature join(519852..519920,519948..520016,520236..520295) FT /gene="pgpA" FT /locus_tag="ROD_04671" FT /note="3 probable transmembrane helices predicted for FT ROD04671 by TMHMM2.0 at aa 21-43, 53-75 and 149-168" FT misc_feature 519852..520280 FT /gene="pgpA" FT /locus_tag="ROD_04671" FT /note="HMMPfam hit to PF04608, FT Phosphatidylglycerophosphatase A, score 4.1e-78" FT /inference="protein motif:PFAM:PF04608" FT CDS complement(520497..521471) FT /transl_table=11 FT /locus_tag="ROD_04681" FT /product="putative aldo/keto reductase" FT /db_xref="GOA:D2TL06" FT /db_xref="InterPro:IPR001395" FT /db_xref="InterPro:IPR020471" FT /db_xref="InterPro:IPR023210" FT /db_xref="UniProtKB/TrEMBL:D2TL06" FT /protein_id="CBG87247.1" FT /translation="MQYNTLGKTDLRVSRLCLGCMTFGEPNRGNHAWTLPEESSRPLIK FT RALEGGINFFDTANSYSAGSSEEIVGRALRDFARRDEVVVATKVFHQVDDLPEGLSRAQ FT ILRSIDDRLRRLGMDYVDILQIHRWDYNTPIEETLAALDEVVKAGKARYIGASSMHASQ FT FAQALALQKQHGWAPFISMQDHYNLIYREEEREMLPLCYREGVAVIPWSPLARGRLTRP FT WGETTARLVSDEVGKNLYRESDENDAQIAARLAGVSEELGATRAQVALAWLLSKPGVAA FT PIIGASREEQLDELLNAVDLTLTPEQIAELETPYKQHPVVGFK" FT misc_feature complement(520524..521453) FT /locus_tag="ROD_04681" FT /note="HMMPfam hit to PF00248, Aldo/keto reductase, score FT 2.4e-66" FT /inference="protein motif:PFAM:PF00248" FT CDS complement(521528..523390) FT /transl_table=11 FT /gene="dxs" FT /locus_tag="ROD_04691" FT /product="1-deoxyxylulose-5-phosphate synthase" FT /EC_number="2.2.1.7" FT /db_xref="GOA:D2TL07" FT /db_xref="InterPro:IPR001017" FT /db_xref="InterPro:IPR005474" FT /db_xref="InterPro:IPR005475" FT /db_xref="InterPro:IPR005476" FT /db_xref="InterPro:IPR005477" FT /db_xref="InterPro:IPR009014" FT /db_xref="InterPro:IPR015941" FT /db_xref="InterPro:IPR020826" FT /db_xref="UniProtKB/TrEMBL:D2TL07" FT /protein_id="CBG87248.1" FT /translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSR FT SSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGL FT HPFPWRGESEYDVLSVGHSSTSVSAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEA FT MNHAGDIKPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSTLREGGKKVFSGVPPI FT KELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQFLHIM FT TKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAAKDSKLM FT AITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPVVAIYSTFLQRA FT YDQVIHDVAIQKLPVMFAIDRAGIVGADGQTHQGAFDLSYLRCIPDMVIMTPSDENECR FT QMLFTGYHYSEGPTAVRYPRGNALGVELTPLEKLPIGKGVVKRHGEKVAILNFGTLMPE FT AAKVAEALNATLVDMRFVKPLDETLILEMAARHEMLVTLEENAIMGGAGSGVNETLMAH FT RKPVPVLNIGLPDFFIPQGTQDEARAELGLDAAGIEAKIRAWLA" FT misc_feature complement(521558..521908) FT /gene="dxs" FT /locus_tag="ROD_04691" FT /note="HMMPfam hit to PF02780, Transketolase, C-terminal, FT score 5e-39" FT /inference="protein motif:PFAM:PF02780" FT misc_feature complement(521939..522442) FT /gene="dxs" FT /locus_tag="ROD_04691" FT /note="HMMPfam hit to PF02779, Transketolase, central FT region, score 2.2e-59" FT /inference="protein motif:PFAM:PF02779" FT misc_feature complement(522068..522118) FT /note="PS00802 Transketolase signature 2." FT /inference="protein motif:Prosite:PS00802" FT misc_feature complement(523226..523285) FT /note="PS00801 Transketolase signature 1." FT /inference="protein motif:Prosite:PS00801" FT CDS complement(523414..524313) FT /transl_table=11 FT /gene="ispA" FT /locus_tag="ROD_04701" FT /product="geranyltranstransferase" FT /EC_number="2.5.1.10" FT /db_xref="GOA:D2TL08" FT /db_xref="InterPro:IPR000092" FT /db_xref="InterPro:IPR008949" FT /db_xref="InterPro:IPR017446" FT /db_xref="UniProtKB/TrEMBL:D2TL08" FT /protein_id="CBG87249.1" FT /translation="MDFTRQLQVCVEQANQALSRFIAPLPFQNTPVVEAMQYGALLGGK FT RLRPFLVYATGKMFGVSLSTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVK FT FGEANAILAGDALQTLAFTIISDAPMPEVTDRDRIAMISELANASGIAGMCGGQALDLD FT AEGRQVPLAALEKIHRHKTGALIRAAVRLGALSAGEKGRNVLPILDKYAESIGLAFQVQ FT DDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARNKARDLIEEARQSLQQLAAQS FT LDTSALEALADYIIQRDK" FT misc_feature complement(523429..524220) FT /gene="ispA" FT /locus_tag="ROD_04701" FT /note="HMMPfam hit to PF00348, Polyprenyl synthetase, score FT 1e-131" FT /inference="protein motif:PFAM:PF00348" FT misc_feature complement(523570..523593) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(523633..523671) FT /note="PS00444 Polyprenyl synthetases signature 2." FT /inference="protein motif:Prosite:PS00444" FT misc_feature complement(524023..524073) FT /note="PS00723 Polyprenyl synthetases signature 1." FT /inference="protein motif:Prosite:PS00723" FT CDS complement(524314..524556) FT /transl_table=11 FT /gene="xseB" FT /locus_tag="ROD_04711" FT /product="exodeoxyribonuclease 7 small subunit" FT /db_xref="GOA:D2TL09" FT /db_xref="InterPro:IPR003761" FT /db_xref="UniProtKB/TrEMBL:D2TL09" FT /protein_id="CBG87250.1" FT /translation="MPKKNEAPVSFETSLNELEQIVSRLESGDLPLDEALNEFERGVQL FT ARQGQLKLQQAEQRVQILLSDDEDATPEPFSPDNA" FT misc_feature complement(524341..524532) FT /gene="xseB" FT /locus_tag="ROD_04711" FT /note="HMMPfam hit to PF02609, Exonuclease VII, small FT subunit, score 3.4e-32" FT /inference="protein motif:PFAM:PF02609" FT CDS 524764..526212 FT /transl_table=11 FT /locus_tag="ROD_04721" FT /product="thiamine biosynthesis protein ThiI" FT /db_xref="GOA:D2TL10" FT /db_xref="InterPro:IPR001763" FT /db_xref="InterPro:IPR003720" FT /db_xref="InterPro:IPR004114" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR020536" FT /db_xref="UniProtKB/TrEMBL:D2TL10" FT /protein_id="CBG87251.1" FT /translation="MKFIIKLFPEITIKSQSVRLRFIKMLTGNIRNVLKHYDETLAVVR FT HWDNIEVRARDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALAEYRDRLEG FT KTFCVRVKRRGKHEFSSIEVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLLLIK FT GRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQ FT VAHYLWNRYGSSHRVRFVAINFEPVVGEILEKVDDGQMGVVLKRMMVRAASKVAERYGV FT QALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINIAREIGTEDFARTM FT PEYCGVISKSPTVKAVKSKIEAEEENFDFSILDRVVEEATNVDIRDIAQQTAQEVVEVE FT TVSGFGPNDVILDIRSVDEQDDKPLRVEGVDVVTLPFYKLSTKFGDLDQSKTWLLWCER FT GVMSRLQALYLREQGFENVKVYRP" FT misc_feature 524986..525258 FT /locus_tag="ROD_04721" FT /note="HMMPfam hit to PF02926, THUMP, score 2.2e-28" FT /inference="protein motif:PFAM:PF02926" FT misc_feature 525286..525870 FT /locus_tag="ROD_04721" FT /note="HMMPfam hit to PF02568, Thiamine biosynthesis FT protein, score 3.4e-112" FT /inference="protein motif:PFAM:PF02568" FT CDS complement(526310..526900) FT /transl_table=11 FT /gene="thiJ" FT /locus_tag="ROD_04731" FT /product="4-methyl-5(b-hydroxyethyl)-thiazole monophosphate FT biosynthesis protein" FT /db_xref="InterPro:IPR002818" FT /db_xref="InterPro:IPR006287" FT /db_xref="UniProtKB/TrEMBL:D2TL11" FT /protein_id="CBG87252.1" FT /translation="MSASALVCLAPGSEETEAVTTIDLLVRGGIDVTTASVASDGALTI FT VCSRGVKLLADAPLVEVADGDYDVIVLPGGVKGAECFRDSPLLVETVRQFHRSGRIVAA FT ICAAAATVLVPHDIFPIGNMTGFPALKDKIPAEQWQDKRVVWDARVKLLTSQGPGTSID FT FALKIIDLLAGREKAHEVASQLVMAAGIYNYYE" FT misc_feature complement(526382..526810) FT /gene="thiJ" FT /locus_tag="ROD_04731" FT /note="HMMPfam hit to PF01965, ThiJ/PfpI, score 4.4e-46" FT /inference="protein motif:PFAM:PF01965" FT CDS complement(526863..527774) FT /transl_table=11 FT /gene="panE" FT /locus_tag="ROD_04741" FT /product="2-dehydropantoate 2-reductase" FT /EC_number="1.1.1.169" FT /db_xref="GOA:D2TL12" FT /db_xref="InterPro:IPR003710" FT /db_xref="InterPro:IPR008927" FT /db_xref="InterPro:IPR013328" FT /db_xref="InterPro:IPR013332" FT /db_xref="InterPro:IPR013752" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TL12" FT /protein_id="CBG87253.1" FT /translation="MKVTVLGCGALGQLWLTALCKQGHEVQGWMRIPQPYCSVNLIETD FT GSIFNESLTANDPEFLAASDLLLVTLKAWQVSDAVKGLAAMLPATTPVLLIHNGMGTLE FT ELAALRQPLLMGTTTHAARRDGNVIIHVASGTTHIGPAREQDGDYSYLADTLQCALPDV FT AWHNNIRAELWRKLAVNCVINPLTALWNCPNGELRHHPDQIAPICHEVAAVIEREGYHT FT SADDLRYYVEQVIDSTAENISSMLQDVRAQRHTEIDYITGYLLKRARAHGITVAENSRL FT FELVKRKESEYERIGTGMPRPW" FT misc_feature complement(526908..527273) FT /gene="panE" FT /locus_tag="ROD_04741" FT /note="HMMPfam hit to PF08546, Ketopantoate reductase FT ApbA/PanE, C-terminal, score 1.5e-57" FT /inference="protein motif:PFAM:PF08546" FT misc_feature complement(527343..527768) FT /gene="panE" FT /locus_tag="ROD_04741" FT /note="HMMPfam hit to PF02558, Ketopantoate reductase FT ApbA/PanE, N-terminal, score 5.2e-38" FT /inference="protein motif:PFAM:PF02558" FT CDS 527881..528390 FT /transl_table=11 FT /locus_tag="ROD_04751" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007551" FT /db_xref="UniProtKB/TrEMBL:D2TL13" FT /protein_id="CBG87254.1" FT /translation="MKGEEKMPSFDIVSEVDLQEARNGVDNAVREVESRFDFRGVEASI FT ELNDANKTIKVLSESDFQVNQLLDILRAKLLKRGIEGASLDVPEEFVHSGKTWYVEAKL FT KQGIESAVQKKIVKLIKDSKLKVQAQIQGDEIRVTGKSRDDLQSVMALVRGGDLGQPFQ FT FKNFRD" FT misc_feature 527899..528384 FT /locus_tag="ROD_04751" FT /note="HMMPfam hit to PF04461, Protein of unknown function FT DUF520, score 5.3e-114" FT /inference="protein motif:PFAM:PF04461" FT CDS complement(528453..529817) FT /transl_table=11 FT /locus_tag="ROD_04761" FT /product="Major facilitator superfamily transporter" FT /db_xref="GOA:D2TL14" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TL14" FT /protein_id="CBG87255.1" FT /translation="MNDYKMTPGELRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQGA FT SEALIGIAIGIYGLAQAIFQIPFGLLSDRIGRKPLIVGGLAVFVLGSIIAALSHSIWGI FT ILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHALG FT LNALFWMIALLATTGIVLTIWVVPNSNNHVLNRESGMVRGSFRKVLAEPKLLKLNFGIM FT CLHILLMSTFVALPGELAESGFPAAEHWKVYLVTMLISFASVVPFIIYAEVKRKMKRVF FT LFCVALILIAEIVLWGAGSHFWELIIGVQLFFLAFNLMEALLPSLISKESPAGYKGTAM FT GVYSTSQFLGVAIGGSLGGWVDGMFDGQTVFLVGALLTVLWLAVASTMKEPPYVSSLRV FT EIPPDITIDDTLKQRLLAMDGVSEVLIAESEHSAYVKIDSKVTNRFEVEQAIRLA" FT misc_feature complement(join(528663..528716,528729..528797, FT 528834..528902,528912..528980,528999..529067, FT 529110..529178,529260..529328,529341..529409, FT 529446..529514,529524..529583,529602..529670, FT 529713..529781)) FT /locus_tag="ROD_04761" FT /note="12 probable transmembrane helices predicted for FT ROD04761 by TMHMM2.0 at aa 13-35, 50-72, 79-98, 102-124, FT 137-159, 164-186, 214-236, 251-273, 280-302, 306-328, FT 341-363 and 368-385" FT misc_feature complement(528729..529769) FT /locus_tag="ROD_04761" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 9.7e-48" FT /inference="protein motif:PFAM:PF07690" FT CDS complement(530015..531379) FT /transl_table=11 FT /locus_tag="ROD_04771" FT /product="Major Facilitator Superfamily transporter" FT /db_xref="GOA:D2TL15" FT /db_xref="InterPro:IPR005829" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TL15" FT /protein_id="CBG87256.1" FT /translation="MSQTQRLDVRELINANPLSRYQKLVIFLGFCVIALDGFDIAIMGF FT IAPTLRQEWGVSNHELGFVISTALIGLALGALFSGPLADWLGRKKIIINSVFFFGFWTI FT ATAFSQNIEQMIFFRFMTGLGLGAAMPNMSTLVSEYAPERQRSFIITVIFCGFTFGAAV FT GGFAASWLIPQFGWHSLMALGGIMPLLFAPILIWKLPESARFLVIKRAPAARIHAILQR FT CYPGQLSENVCFTLPPQPVNSSAIGTVLSRQYLFGSLMLWLVYFMGLFLVYILGSWLPT FT LVKEIGLTVSQAAIMTAIYQAGGTIGSLFTGWLMDRIEPHRALGVIFTIGGLFTMAIGY FT AGVNFLLLCLLAFVSGACLNGANTGMNALSARFYPTQARATGSSWMHGVGRIGAIISAF FT AGAEMLALELDFKSVFLILGIPAALTVVGLTAKGYWAAGPISGKSAVSATLRSPS" FT misc_feature complement(530048..530071) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(join(530072..530140,530159..530227, FT 530336..530404,530438..530506,530549..530617, FT 530783..530851,530864..530932,530966..531034, FT 531044..531112,531131..531199,531242..531310)) FT /locus_tag="ROD_04771" FT /note="11 probable transmembrane helices predicted for FT ROD04771 by TMHMM2.0 at aa 24-46, 61-83, 90-112, 116-138, FT 150-172, 177-199, 255-277, 292-314, 326-348, 385-407 and FT 414-436" FT misc_feature complement(530162..531295) FT /locus_tag="ROD_04771" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 9.8e-53" FT /inference="protein motif:PFAM:PF07690" FT misc_feature complement(530306..530338) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(530942..531019) FT /note="PS00217 Sugar transport proteins signature 2." FT /inference="protein motif:Prosite:PS00217" FT misc_feature complement(531095..531145) FT /note="PS00216 Sugar transport proteins signature 1." FT /inference="protein motif:Prosite:PS00216" FT CDS complement(531393..532196) FT /transl_table=11 FT /locus_tag="ROD_04781" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR012307" FT /db_xref="InterPro:IPR013022" FT /db_xref="UniProtKB/TrEMBL:D2TL16" FT /protein_id="CBG87257.1" FT /translation="MNMRSLSLAALTVLDVPPPEQVRIAALAGYSHVGIRLLPSTPDDP FT DYDMLGDTATVRETLAALRDTGIRVSDVEIVRLTPDFNVQALRPFLETAARLEAKQVLV FT AGNDDNLARCAQNLAELAKAGEAYGLTMNLEPMPWTDIPTLAAARKLIAASGQQNVGIL FT IDAIHFWRAGESLEALAALPSQQLNYMQLCDAPARIPTETRELIYQARCARLIPGEGEL FT DLRGLLAALPSALPISVEVPLAGPQGALPAQQRAQLLFNAAQSFL" FT misc_feature complement(531531..532133) FT /locus_tag="ROD_04781" FT /note="HMMPfam hit to PF01261, Xylose isomerase-type TIM FT barrel, score 5.2e-30" FT /inference="protein motif:PFAM:PF01261" FT CDS complement(532272..533966) FT /transl_table=11 FT /locus_tag="ROD_04791" FT /product="putative flavoprotein subunit of a reductase" FT /db_xref="GOA:D2TL17" FT /db_xref="InterPro:IPR003953" FT /db_xref="UniProtKB/TrEMBL:D2TL17" FT /protein_id="CBG87258.1" FT /translation="MSRHVEVDLLVIGSGAAGLSAAVSAALHGGRVLVAEKEPVIGGTS FT AWSGGWLWIPQNPLAREEGIVEEDDAPLTYLRAEMEGRPADARLLAFLRHGPEMVEFFR FT RRTAVQFLSGSKMPDFHNSEGFATGGRSVTAQPYDARELGDWVHRLRPPLETISLAGMG FT IAGGQDMAHFFNATRSPRSALYAARRLATHYWQRLRYGRGLHLVNGNALVARLLRSALD FT AGVSFQLNAPVYRLLQGEHGVTGALLGSDEGEIRVNARAVVLACGGFPHDKQRLAEQVT FT HAREGYGHFSAAPPGNQGDGIRLGESVGGQFDASLKHPMAWAPVSRVSLSSGLQLAFPH FT LVERAKPGFIAVLPDGKRFVNEADSYHDFIAALLDATPPGEKPQAWLIGDHRALRRYGM FT GHARPSPFPLSAWLRTGYLYSGATLEELAEKCAIDGTALCATVKRFNDFARQGRDDDFR FT RGASAYNRAQGDASHRPSPTLGTLAKAPYYAVRILPGSLGSFSGLKTDEQARVLDAGQR FT PVPGLFAVGNDMSSVMQGFYPSGGITLGPAMTFGYLVGKNLFAHITT" FT misc_feature complement(532335..533945) FT /locus_tag="ROD_04791" FT /note="HMMPfam hit to PF00890, Fumarate reductase/succinate FT dehydrogenase flavoprotein, N-terminal, score 1.1e-182" FT /inference="protein motif:PFAM:PF00890" FT sig_peptide complement(533892..533966) FT /locus_tag="ROD_04791" FT /note="Signal peptide predicted for ROD04791 by SignalP 2.0 FT HMM (Signal peptide probability 0.802) with cleavage site FT probability 0.503 between residues 25 and 26" FT CDS complement(533977..534297) FT /transl_table=11 FT /locus_tag="ROD_04801" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR011008" FT /db_xref="InterPro:IPR012577" FT /db_xref="UniProtKB/TrEMBL:D2TL18" FT /protein_id="CBG87259.1" FT /translation="MIYEKRTYTINPLKMAEWLALYKSDAYAVQTEHLGKLIGFFFTEI FT GVVNQVVHIWAWESLDDRLMRRARMAQDKRWQTFSRKNRELAAVERLESVLMRPTDFSP FT LQ" FT misc_feature complement(533986..534291) FT /locus_tag="ROD_04801" FT /note="HMMPfam hit to PF07978, NIPSNAP, score 1.8e-39" FT /inference="protein motif:PFAM:PF07978" FT misc_feature complement(534013..534042) FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT /inference="protein motif:Prosite:PS00339" FT CDS complement(534294..535988) FT /transl_table=11 FT /locus_tag="ROD_04811" FT /product="putative exported protein" FT /db_xref="GOA:D2TL19" FT /db_xref="InterPro:IPR003953" FT /db_xref="UniProtKB/TrEMBL:D2TL19" FT /protein_id="CBG87260.1" FT /translation="MKSWDVIVIGSGAAGFAAAVTACCQGLSVLMLEKASQFGGTSAIS FT GGAVWINDTDQARNLGKSGPAEEMKTYLRTIIGDAHYRPEMIDAFVNAGREALAFLERE FT GAVKYSLRPLSPDYYPDEPGAVDVGRALEVIEYDGRKLGQHFKALRSPPPGMLLFGGMM FT VNRVDIHHFLSMRRSWRSLVHCARLLLRYGRDRLRYPRGTRLAMGNALIARMASLALRK FT GLELELNVDVKTLTEQQGRVTGVEIERDGKTLTLHARRGVVLATGGFAAGRIAPQFRPA FT TRQHYTMSPATNDGAAFRLGQPLGVQQGADLPSNFFWAPVSVLRRPDGSEERFPHLVTD FT RAKPGVIAVNQHGMRFVNEADSYHHFVSAMQQRPENAPCFLLCDAQAMKRYGLGLARPA FT PVNNDALVSAVYLYRAESLSALAQQLDIDPQQLEQTVARYNHDAQTGNDTAFHKGGNSY FT NRTLGDPAHHPDACNAPLLRAPFYAIRIFTGDLGTSRGLVTTADAQVINQQGQPVGGLY FT AVGNDMDSIMAGTYPGPGITLGPALTFGYLAAMHMTQTSPLNAGEAA" FT misc_feature complement(534375..535976) FT /locus_tag="ROD_04811" FT /note="HMMPfam hit to PF00890, Fumarate reductase/succinate FT dehydrogenase flavoprotein, N-terminal, score 2.5e-159" FT /inference="protein motif:PFAM:PF00890" FT misc_feature complement(534678..534743) FT /note="Predicted helix-turn-helix motif with score FT 1025.000, SD 2.68 at aa 416-437, sequence FT ESLSALAQQLDIDPQQLEQTVA" FT misc_feature complement(535902..535970) FT /locus_tag="ROD_04811" FT /note="1 probable transmembrane helix predicted for FT ROD04811 by TMHMM2.0 at aa 7-29" FT misc_feature complement(535920..535952) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT sig_peptide complement(535923..535988) FT /locus_tag="ROD_04811" FT /note="Signal peptide predicted for ROD04811 by SignalP 2.0 FT HMM (Signal peptide probability 0.871) with cleavage site FT probability 0.490 between residues 22 and 23" FT CDS complement(535985..536806) FT /transl_table=11 FT /locus_tag="ROD_04821" FT /product="quinate/shikimate dehydrogenase" FT /EC_number="1.1.1.282" FT /db_xref="GOA:D2TL20" FT /db_xref="InterPro:IPR000594" FT /db_xref="InterPro:IPR013708" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TL20" FT /protein_id="CBG87261.1" FT /translation="MVSGFTQIVAIIGHPITQVKSPENFNHYFASQRMDKVMIPVDIAP FT DAVAAYLNALRGWQNMSGILVTVPHKQRVAELLDALTPRARHLGAVNVVRKLDDGRLEG FT DMLDGVGFQLAAEAHGFQPAGKRALLSGCGGVGSAIAWGLCEAGISRLALYDRDDACRQ FT RLENRLITHFPNTHITALPDSLAEIDLLINGSPAGMAGFDPLPLSQTLLDTLTAATHVA FT DVVTTPIITPLLAFAGERGCRTQTGPELAMAQMELMGQFIGALAPTHEATP" FT misc_feature complement(536105..536503) FT /locus_tag="ROD_04821" FT /note="HMMPfam hit to PF01488, Quinate/shikimate FT 5-dehydrogenase/glutamyl-tRNA reductase, score 0.00021" FT /inference="protein motif:PFAM:PF01488" FT misc_feature complement(536525..536776) FT /locus_tag="ROD_04821" FT /note="HMMPfam hit to PF08501, Shikimate dehydrogenase FT substrate binding, N-terminal, score 5.3e-23" FT /inference="protein motif:PFAM:PF08501" FT CDS 536959..537717 FT /transl_table=11 FT /locus_tag="ROD_04831" FT /product="putative IclR-family transcriptional regulator" FT /db_xref="GOA:D2TL21" FT /db_xref="InterPro:IPR005471" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR014757" FT /db_xref="UniProtKB/TrEMBL:D2TL21" FT /protein_id="CBG87262.1" FT /translation="MQNEIHQRDLIVGLQKGLALIQLFSKEHPRLTVPQAAKMSGLTQS FT AARRFFLTLVHEGYLATDGRFYWLMAKTLRLGQAYVDSAQFPRMVRPIVEYVASRTEEH FT ASVGVIDDNELVYIARSRHTPFNSTSVRLGERVPIHCTAGGRLWLASLPETECEAVLRR FT IPREQRTPYTVTGVDELMALIAQVRRQGYATIEQEFEIGMLVIAVPLADREGLYWGALS FT LTSHQSRTTLEALCRDHLNLLYSAQAMLVS" FT misc_feature 536995..537255 FT /locus_tag="ROD_04831" FT /note="HMMPfam hit to PF09339, Transcriptional regulator FT IclR, N-terminal, score 2.4e-19" FT /inference="protein motif:PFAM:PF09339" FT misc_feature 537049..537114 FT /note="Predicted helix-turn-helix motif with score FT 1169.000, SD 3.17 at aa 31-52, sequence FT LTVPQAAKMSGLTQSAARRFFL" FT misc_feature 537334..537714 FT /locus_tag="ROD_04831" FT /note="HMMPfam hit to PF01614, Transcriptional regulator FT IclR, C-terminal, score 2.6e-16" FT /inference="protein motif:PFAM:PF01614" FT CDS complement(537762..538652) FT /transl_table=11 FT /gene="cyoE" FT /locus_tag="ROD_04841" FT /product="protoheme IX farnesyltransferase (heme O FT synthase)" FT /EC_number="2.5.1.-" FT /db_xref="GOA:D2TL22" FT /db_xref="InterPro:IPR000537" FT /db_xref="InterPro:IPR006369" FT /db_xref="UniProtKB/TrEMBL:D2TL22" FT /protein_id="CBG87263.1" FT /translation="MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLVG FT VSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPAVSLVYATLLGIAGFMLLWFG FT ANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTNEFDSGAL FT ILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAIATLM FT LSLGGYAGYKYLVVAAAVSVWWLGMALRGYKVEDDRIWARKLFGFSIIAITALSVMMSV FT DFMVPDSHSLLTYVW" FT misc_feature complement(join(537795..537863,537897..537950, FT 537960..538028,538107..538175,538188..538256, FT 538275..538334,538347..538415,538473..538541, FT 538551..538619)) FT /gene="cyoE" FT /locus_tag="ROD_04841" FT /note="9 probable transmembrane helices predicted for FT ROD04841 by TMHMM2.0 at aa 12-34, 38-60, 80-102, 107-126, FT 133-155, 160-182, 209-231, 235-252 and 264-286" FT misc_feature complement(537804..538610) FT /gene="cyoE" FT /locus_tag="ROD_04841" FT /note="HMMPfam hit to PF01040, UbiA prenyltransferase, FT score 5.2e-90" FT /inference="protein motif:PFAM:PF01040" FT misc_feature complement(538416..538484) FT /note="PS00943 UbiA prenyltransferase family signature." FT /inference="protein motif:Prosite:PS00943" FT misc_feature complement(538491..538523) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(538664..538993) FT /transl_table=11 FT /gene="cyoD" FT /locus_tag="ROD_04842" FT /product="cytochrome o ubiquinol oxidase subunit IV" FT /db_xref="GOA:D2TL23" FT /db_xref="InterPro:IPR005171" FT /db_xref="InterPro:IPR014210" FT /db_xref="UniProtKB/TrEMBL:D2TL23" FT /protein_id="CBG87264.1" FT /translation="MSHSNDHGGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPGV FT ILGTILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNY FT NMMMH" FT misc_feature complement(538700..538960) FT /gene="cyoD" FT /locus_tag="ROD_04842" FT /note="HMMPfam hit to PF03626, Cytochrome C oxidase subunit FT IV prokaryotic, score 5e-52" FT /inference="protein motif:PFAM:PF03626" FT misc_feature complement(join(538700..538768,538796..538864, FT 538883..538951)) FT /gene="cyoD" FT /locus_tag="ROD_04842" FT /note="3 probable transmembrane helices predicted for FT ROD04842 by TMHMM2.0 at aa 15-37, 44-66 and 76-98" FT CDS complement(538993..539607) FT /transl_table=11 FT /gene="cyoC" FT /locus_tag="ROD_04851" FT /product="cytochrome o ubiquinol oxidase subunit 3" FT /EC_number="1.10.3.-" FT /db_xref="GOA:D2TL24" FT /db_xref="InterPro:IPR000298" FT /db_xref="InterPro:IPR013833" FT /db_xref="InterPro:IPR014206" FT /db_xref="InterPro:IPR024791" FT /db_xref="UniProtKB/TrEMBL:D2TL24" FT /protein_id="CBG87265.1" FT /translation="MATDTLTHATAHAHEHGHHDAGQTKIFGFWIYLMSDCILFSILFA FT TYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMHKNNKSQVVSWLAL FT TFLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQ FT IARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM" FT misc_feature complement(538999..539607) FT /gene="cyoC" FT /locus_tag="ROD_04851" FT /note="HMMPfam hit to PF00510, Cytochrome c oxidase, FT subunit III, score 4.1e-06" FT /inference="protein motif:PFAM:PF00510" FT misc_feature complement(join(538999..539067,539128..539196, FT 539254..539316,539353..539421,539464..539532)) FT /gene="cyoC" FT /locus_tag="ROD_04851" FT /note="5 probable transmembrane helices predicted for FT ROD04851 by TMHMM2.0 at aa 26-48, 63-85, 98-118, 138-160 FT and 181-203" FT CDS complement(539597..541588) FT /transl_table=11 FT /gene="cyoB" FT /locus_tag="ROD_04861" FT /product="cytochrome o ubiquinol oxidase subunit 1" FT /EC_number="1.10.3.-" FT /db_xref="GOA:D2TL25" FT /db_xref="InterPro:IPR000883" FT /db_xref="InterPro:IPR014207" FT /db_xref="InterPro:IPR023615" FT /db_xref="InterPro:IPR023616" FT /db_xref="UniProtKB/TrEMBL:D2TL25" FT /protein_id="CBG87266.1" FT /translation="MFGKLTLDAVPYHEPIIMVTIAGIIIGGLAILGLITYFGKWSYLW FT KEWLTSVDHKRLGIMYVIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQVFT FT AHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNLSLGVG FT EFAQTGWLAYPPLSGIEYSPSVGVDYWIWALQLSGIGTTLTGINFFVTILKMRAPGMTM FT FKMPVFTWASLCANVLIIASFPILTVTIALLTLDRYLGTHFFTNDMGGNMMMYINLIWA FT WGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATICITVLSFIVWLHHFFTMGA FT GANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGV FT LLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFW FT FWIIGFFVAFMPLYVLGFMGMTRRLSQQIDPQFHPMLMVAAAGAALIALGILCLVIQIY FT VSIRDREQNRDLTGDPWGGRTLEWATSSPPPFYNFAVVPHVHERDAFWEMKEKGEAYKQ FT PAQYEEIHMPKNSGAGIVIAAFATLFGFAMIWHIWWLAIASFAGMIISWIVKSFDEDVD FT YYVPVHEVEKLENQHFDEITKAGLKNGN" FT misc_feature complement(join(539753..539821,540041..540109, FT 540152..540220,540281..540349,540377..540445, FT 540482..540550,540593..540661,540698..540766, FT 540824..540892,540950..541018,541103..541171, FT 541208..541276,541352..541420,541478..541546)) FT /gene="cyoB" FT /locus_tag="ROD_04861" FT /note="14 probable transmembrane helices predicted for FT ROD04861 by TMHMM2.0 at aa 15-37, 57-79, 105-127, 140-162, FT 191-213, 233-255, 275-297, 310-332, 347-369, 382-404, FT 414-436, 457-479, 494-516 and 590-612" FT misc_feature complement(540074..541450) FT /gene="cyoB" FT /locus_tag="ROD_04861" FT /note="HMMPfam hit to PF00115, Cytochrome c oxidase, FT subunit I, score 1.5e-268" FT /inference="protein motif:PFAM:PF00115" FT misc_feature complement(540293..540325) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(540587..540751) FT /note="PS00077 Heme-copper oxidase catalytic subunit, FT copper B binding region signature." FT /inference="protein motif:Prosite:PS00077" FT CDS complement(541600..542556) FT /transl_table=11 FT /gene="cyoA" FT /locus_tag="ROD_04871" FT /product="cytochrome o ubiquinol oxidase subunit 2" FT /EC_number="1.10.3.-" FT /db_xref="GOA:D2TL26" FT /db_xref="InterPro:IPR002429" FT /db_xref="InterPro:IPR006333" FT /db_xref="InterPro:IPR008972" FT /db_xref="InterPro:IPR010514" FT /db_xref="InterPro:IPR011759" FT /db_xref="InterPro:IPR012141" FT /db_xref="InterPro:IPR015964" FT /db_xref="UniProtKB/TrEMBL:D2TL26" FT /protein_id="CBG87267.1" FT /translation="MRLRKYNKSLGWLSLIAGATLLSGCNSALLDPKGQIGLEQRSLIL FT TAFGLMLIVVIPAILMAIGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIILFLA FT VLTWKTTHSLEPSKPLVHDEEPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYF FT KVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEAGTYDGISASYSGPGFSGMKFKA FT IATPDRAAFDQWVANAKQSPNAINDMAAFEKVAAPSEYNKVEYFSNVKPDLFKDVINKF FT MGHGKSMDMTQPEGEHSSHEGMEGMDMSHAEAANSRG" FT misc_feature complement(541699..541842) FT /gene="cyoA" FT /locus_tag="ROD_04871" FT /note="HMMPfam hit to PF06481, COX aromatic rich, score FT 1.2e-17" FT /inference="protein motif:PFAM:PF06481" FT misc_feature complement(541882..542172) FT /gene="cyoA" FT /locus_tag="ROD_04871" FT /note="HMMPfam hit to PF00116, Cytochrome c oxidase subunit FT II C-terminal, score 8.5e-06" FT /inference="protein motif:PFAM:PF00116" FT misc_feature complement(join(542227..542295,542356..542424, FT 542467..542523)) FT /gene="cyoA" FT /locus_tag="ROD_04871" FT /note="3 probable transmembrane helices predicted for FT ROD04871 by TMHMM2.0 at aa 12-30, 45-67 and 88-110" FT sig_peptide complement(542467..542556) FT /gene="cyoA" FT /locus_tag="ROD_04871" FT /note="Signal peptide predicted for ROD04871 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.588 between residues 30 and 31" FT misc_feature complement(542482..542514) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(543015..544493) FT /transl_table=11 FT /gene="ampG" FT /locus_tag="ROD_04881" FT /product="peptidoglycan monomer FT (N-acetylglucosamine-1,6-anhydro-N-acetylmuramic FT acid-tetrapeptide) uptake protein (major facilitator FT superfamily protein)" FT /db_xref="GOA:D2TLQ9" FT /db_xref="InterPro:IPR004752" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TLQ9" FT /protein_id="CBG87268.1" FT /translation="MPMTRYLRIFQQPKSAILLILGFASGLPLALTSGTLQAWMTVENI FT DLKTIGFFSLVGQAYVFKFLWSPVMDRYTPPFLGRRRGWLLTTQILLLIAIAAMGFLEP FT GSQLRWMAALAMVIAFCSASQDIVFDAWKTDVLAAEERGAGAAISVLGYRLGMLVSGGL FT ALWLADRWLGWQGMYWLMAALLIPCIIATLLAPEPTDSIPVPKTLEQAVAAPLRDFFGR FT NNAWLILLLIILYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGALYGG FT LLMQRLTLFRALLIFGILQGVSNAGYWLLSVTDKHMISMATAVFFENLCGGMGTSAFVA FT LLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVVAAVPGLLL FT LLICRQTLEFTRENESFLPRTEFRSAYRLALRMLMAGSGLLAVWLLLLATNALGLTHIA FT FLAQLLETAVLVALLGVVLGGVLDYLALRKTHLA" FT misc_feature complement(join(543051..543119,543129..543197, FT 543285..543353,543363..543431,543468..543536, FT 543564..543632,543645..543713,543756..543824, FT 543906..543965,543993..544061,544098..544166, FT 544179..544247,544284..544349,544377..544445)) FT /gene="ampG" FT /locus_tag="ROD_04881" FT /note="14 probable transmembrane helices predicted for FT ROD04881 by TMHMM2.0 at aa 17-39, 49-70, 83-105, 110-132, FT 145-167, 177-196, 224-246, 261-283, 288-310, 320-342, FT 355-377, 381-403, 433-455 and 459-481" FT misc_feature complement(543360..544442) FT /gene="ampG" FT /locus_tag="ROD_04881" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 4.2e-29" FT /inference="protein motif:PFAM:PF07690" FT sig_peptide complement(544380..544493) FT /gene="ampG" FT /locus_tag="ROD_04881" FT /note="Signal peptide predicted for ROD04881 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.790 between residues 38 and 39" FT CDS complement(544536..545114) FT /transl_table=11 FT /locus_tag="ROD_04891" FT /product="putative exported protein" FT /db_xref="InterPro:IPR005619" FT /db_xref="InterPro:IPR012640" FT /db_xref="UniProtKB/TrEMBL:D2TLR0" FT /protein_id="CBG87269.1" FT /translation="MLKKILFPLVAIFMLAGCATPPTTIDVSPKITLPQQDPSLMGVTV FT SINGADQRQDQALAKVTRDNQLVTLTASRDLRFLLQEVLEKQMTARGYMVGPNGAVNLQ FT IIVNQLYADVSQGNVRYNIATKADIAIIATAANGNKMTKNYRASYSIEGAFTATNKNIA FT NAVNSVLTDTIADMSQDTSIHDFIKQNAR" FT misc_feature complement(544539..545114) FT /locus_tag="ROD_04891" FT /note="HMMPfam hit to PF03923, Uncharacterized lipoprotein, FT score 4.2e-07" FT /inference="protein motif:PFAM:PF03923" FT sig_peptide complement(545058..545114) FT /locus_tag="ROD_04891" FT /note="Signal peptide predicted for ROD04891 by SignalP 2.0 FT HMM (Signal peptide probability 0.990) with cleavage site FT probability 0.853 between residues 19 and 20" FT misc_feature complement(545061..545093) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 545418..545735 FT /transl_table=11 FT /gene="bolA" FT /locus_tag="ROD_04901" FT /product="putative transcriptional regulator" FT /db_xref="InterPro:IPR002634" FT /db_xref="UniProtKB/TrEMBL:D2TLR1" FT /protein_id="CBG87270.1" FT /translation="MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVS FT DRFTGERFLNRHRMIYGTLTAELSTTVHALALHTYTIKEWEGLQDTIFASPPCRGAGSI FT A" FT misc_feature 545445..545672 FT /gene="bolA" FT /locus_tag="ROD_04901" FT /note="HMMPfam hit to PF01722, BolA-like protein, score FT 4.7e-39" FT /inference="protein motif:PFAM:PF01722" FT CDS 546077..547375 FT /transl_table=11 FT /gene="tig" FT /locus_tag="ROD_04911" FT /product="trigger factor" FT /db_xref="GOA:D2TLR2" FT /db_xref="InterPro:IPR001179" FT /db_xref="InterPro:IPR005215" FT /db_xref="InterPro:IPR008880" FT /db_xref="InterPro:IPR008881" FT /db_xref="UniProtKB/TrEMBL:D2TLR2" FT /protein_id="CBG87271.1" FT /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFR FT KGKVPMNVVAQRYGASVRQDVLGDLMSRNFVDAIIKEKINPAGAPTYVPGEYKQGEDFT FT YSVEFEVYPEVELTGLEAIEVEKPVVEVTDADVDVMLDTLRKQQATWKDKDGAADAEDR FT VTLDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYH FT AENLKGKAAKFAINLKKVEERELPELTEEFIKRFGVEDGSVAGLRTEVRKNMERELKGA FT VRNRIKSQAIEGLVKANDIDVPSALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQ FT AKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMR FT NVALEEQAVEAVLAKAKVTEKATTFNELMNQQA" FT misc_feature 546077..546511 FT /gene="tig" FT /locus_tag="ROD_04911" FT /note="HMMPfam hit to PF05697, Bacterial trigger factor, FT N-terminal, score 7.6e-70" FT /inference="protein motif:PFAM:PF05697" FT misc_feature 546530..546790 FT /gene="tig" FT /locus_tag="ROD_04911" FT /note="HMMPfam hit to PF00254, Peptidyl-prolyl cis-trans FT isomerase, FKBP-type, score 4.7e-27" FT /inference="protein motif:PFAM:PF00254" FT misc_feature 546791..547300 FT /gene="tig" FT /locus_tag="ROD_04911" FT /note="HMMPfam hit to PF05698, Bacterial trigger factor, FT C-terminal, score 6.7e-61" FT /inference="protein motif:PFAM:PF05698" FT CDS 547620..548243 FT /transl_table=11 FT /gene="clpP" FT /locus_tag="ROD_04921" FT /product="ATP-dependent clp protease proteolytic subunit" FT /db_xref="GOA:D2TLR3" FT /db_xref="InterPro:IPR001907" FT /db_xref="InterPro:IPR018215" FT /db_xref="InterPro:IPR023562" FT /db_xref="UniProtKB/TrEMBL:D2TLR3" FT /protein_id="CBG87272.1" FT /translation="MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFL FT TGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTI FT CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRM FT NELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN" FT misc_feature 547692..548237 FT /gene="clpP" FT /locus_tag="ROD_04921" FT /note="HMMPfam hit to PF00574, Peptidase S14, ClpP, score FT 8e-140" FT /inference="protein motif:PFAM:PF00574" FT misc_feature 547926..547961 FT /note="PS00381 Endopeptidase Clp serine active site." FT /inference="protein motif:Prosite:PS00381" FT misc_feature 547992..548033 FT /note="PS00382 Endopeptidase Clp histidine active site." FT /inference="protein motif:Prosite:PS00382" FT CDS 548425..549699 FT /transl_table=11 FT /gene="clpX" FT /locus_tag="ROD_04931" FT /product="ATP-dependent Clp protease ATP-binding subunit" FT /db_xref="GOA:D2TLR4" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004487" FT /db_xref="InterPro:IPR010603" FT /db_xref="InterPro:IPR013093" FT /db_xref="InterPro:IPR019489" FT /db_xref="UniProtKB/TrEMBL:D2TLR4" FT /protein_id="CBG87273.1" FT /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCN FT DIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT FT SNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQ FT KLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV FT PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKA FT SEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQAL FT FNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSLEDVEKVVID FT ESVIGGQSKPLLIYGKPEAQQASGE" FT misc_feature 548458..548577 FT /gene="clpX" FT /locus_tag="ROD_04931" FT /note="HMMPfam hit to PF06689, Zinc finger, C4-type, score FT 5e-27" FT /inference="protein motif:PFAM:PF06689" FT misc_feature 548752..549357 FT /gene="clpX" FT /locus_tag="ROD_04931" FT /note="HMMPfam hit to PF07724, ATPase AAA-2, score 4.7e-81" FT /inference="protein motif:PFAM:PF07724" FT misc_feature 548779..548802 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 549826..552237 FT /transl_table=11 FT /gene="lon" FT /locus_tag="ROD_04941" FT /product="ATP-dependent protease La" FT /EC_number="3.4.21.53" FT /db_xref="GOA:D2TLR5" FT /db_xref="InterPro:IPR003111" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR003959" FT /db_xref="InterPro:IPR004815" FT /db_xref="InterPro:IPR008268" FT /db_xref="InterPro:IPR008269" FT /db_xref="InterPro:IPR015947" FT /db_xref="InterPro:IPR020568" FT /db_xref="UniProtKB/TrEMBL:D2TLR5" FT /protein_id="CBG87274.1" FT /translation="MKHSVSPDYLADTKLRESSMNPERSERIEIPVLPLRDVVVYPHMV FT IPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPD FT GTVKVLVEGLQRARISALSDNGEHFSAKAEYLDSPAIDEREQEVLVRTAISQFEGYIKL FT NKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESE FT IDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAK FT MPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILD FT TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYIRM FT ALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASA FT LLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEK FT LNIAKRHLLPKQIERNALKKGELTVEDSAIIGIIRYYTREAGVRSLEREISKLCRKAVK FT QLLLDKSLRQIVIDGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETA FT CVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPK FT DGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTV FT LIPYENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK" FT misc_feature 549910..550488 FT /gene="lon" FT /locus_tag="ROD_04941" FT /note="HMMPfam hit to PF02190, Peptidase S16, lon FT N-terminal, score 2.6e-84" FT /inference="protein motif:PFAM:PF02190" FT misc_feature 550069..550104 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT /inference="protein motif:Prosite:PS00178" FT misc_feature 550933..551517 FT /gene="lon" FT /locus_tag="ROD_04941" FT /note="HMMPfam hit to PF00004, AAA ATPase, core, score FT 1.1e-44" FT /inference="protein motif:PFAM:PF00004" FT misc_feature 550948..550971 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 551587..552201 FT /gene="lon" FT /locus_tag="ROD_04941" FT /note="HMMPfam hit to PF05362, Peptidase S16, lon FT C-terminal, score 4.9e-158" FT /inference="protein motif:PFAM:PF05362" FT misc_feature 551908..551934 FT /note="PS01046 ATP-dependent serine proteases, lon family, FT serine active site." FT /inference="protein motif:Prosite:PS01046" FT misc_feature 551923..551955 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 552431..552718 FT /transl_table=11 FT /gene="hupB" FT /locus_tag="ROD_04951" FT /product="DNA-binding protein HU-beta" FT /db_xref="GOA:D2TLR6" FT /db_xref="InterPro:IPR000119" FT /db_xref="InterPro:IPR010992" FT /db_xref="InterPro:IPR020816" FT /db_xref="InterPro:IPR023630" FT /db_xref="UniProtKB/TrEMBL:D2TLR6" FT /protein_id="CBG87275.1" FT /translation="MRKRRVNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGD FT DVALVGFGTFSVKERAARTGRNPQTGKEITIAAAKVPGFRAGKALKDAVN" FT misc_feature 552446..552715 FT /gene="hupB" FT /locus_tag="ROD_04951" FT /note="HMMPfam hit to PF00216, Histone-like bacterial FT DNA-binding protein, score 8.4e-48" FT /inference="protein motif:PFAM:PF00216" FT misc_feature 552581..552640 FT /note="PS00045 Bacterial histone-like DNA-binding proteins FT signature." FT /inference="protein motif:Prosite:PS00045" FT CDS 552906..554780 FT /transl_table=11 FT /gene="ppiD" FT /locus_tag="ROD_04961" FT /product="peptidyl-prolyl cis-trans isomerase D" FT /EC_number="5.2.1.8" FT /note="unknown EC_number=" FT /db_xref="GOA:D2TLR7" FT /db_xref="InterPro:IPR000297" FT /db_xref="InterPro:IPR008880" FT /db_xref="InterPro:IPR023058" FT /db_xref="UniProtKB/TrEMBL:D2TLR7" FT /protein_id="CBG87276.1" FT /translation="MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAKV FT NGQEISRGQFENAFNGERNRMQQQLGDQYSELAANEGYMKTLRQQTLNRLIDEALLDQY FT ARELKLGISDEQVKQAIFSTPAFQVDGKFDNNHYNALVIQMGMTADQYAQALRNQLTTQ FT QLINGVAGTDFMLKGETDELAALVSQQRVVREATIDVQALAAKQQATEQEVASYYEQHK FT NNFMTPEQFRVSYIKLDAAAMQKPVTDADVQSYYDQHQDEFTQPQRSRYSIIQTKTEDE FT AKAVLDALNKGGDFATLAKEKSADIISACNGGDMGWLEEATMPDELKNAGLKEKGQLSG FT VIKSSVGFLIARLDDVQPAKVKPLSEVHDDIAAKVKQEKALDAFFALQQKVSDAANNDT FT ESLAGAEQAAGVKAVETGWFSRDSLPEELNFKPVSDAIFDGSLVGENGTPGRNSDIITV FT DGDRVFVLRISEHKAEAVKPLADVKDQVTERVKYDKAAQQAKLDAEKLLVELKAGKGAE FT AMKAAGLSFGAQKTLSRTNQDPVSQAAFALSLPAKDKPGYGMANDMQGNVVVLALDEVK FT AGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDAMEQQP" FT misc_feature 552942..553010 FT /gene="ppiD" FT /locus_tag="ROD_04961" FT /note="1 probable transmembrane helix predicted for FT ROD04961 by TMHMM2.0 at aa 13-35" FT misc_feature 553725..553967 FT /gene="ppiD" FT /locus_tag="ROD_04961" FT /note="HMMPfam hit to PF00639, Peptidyl-prolyl cis-trans FT isomerase, PpiC-type, score 6.3e-17" FT /inference="protein motif:PFAM:PF00639" FT misc_feature 553788..553853 FT /note="PS01096 PpiC-type peptidyl-prolyl cis-trans FT isomerase signature." FT /inference="protein motif:Prosite:PS01096" FT CDS 554931..555305 FT /transl_table=11 FT /locus_tag="ROD_04971" FT /product="putative DNA uptake protein" FT /db_xref="GOA:D2TLR8" FT /db_xref="InterPro:IPR003583" FT /db_xref="InterPro:IPR004509" FT /db_xref="UniProtKB/TrEMBL:D2TLR8" FT /protein_id="CBG87277.1" FT /translation="MKHAIKALLVTLSFACAGVTHSALAAAPAAKGATVESKAQVQSAA FT QSKAATPAKESDEEGTRVSINTASAEELAQAMNGVGLKKAQAIVSYREEYGPFKTVEDL FT KQVPGMGSALVERNLKALTL" FT sig_peptide 554931..555005 FT /locus_tag="ROD_04971" FT /note="Signal peptide predicted for ROD04971 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.993 between residues 25 and 26" FT misc_feature 554949..555017 FT /locus_tag="ROD_04971" FT /note="1 probable transmembrane helix predicted for FT ROD04971 by TMHMM2.0 at aa 7-29" FT CDS 555410..555811 FT /transl_table=11 FT /locus_tag="ROD_04981" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TLR9" FT /db_xref="InterPro:IPR006683" FT /db_xref="InterPro:IPR006684" FT /db_xref="UniProtKB/TrEMBL:D2TLR9" FT /protein_id="CBG87278.1" FT /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWMT FT AHNIAFVVVNININYRRPAVLSDVLTITSQLQQLNGKSGILSQAITLEPEGQVVADALI FT TFVCIDLKTQKAQPLEGELRDKLEQMVKA" FT misc_feature 555452..555706 FT /locus_tag="ROD_04981" FT /note="HMMPfam hit to PF03061, Thioesterase superfamily, FT score 3.1e-15" FT /inference="protein motif:PFAM:PF03061" FT CDS complement(555908..556603) FT /transl_table=11 FT /gene="queC" FT /locus_tag="ROD_04991" FT /product="queuosine biosynthesis protein" FT /db_xref="GOA:D2TLS0" FT /db_xref="InterPro:IPR001518" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR018317" FT /db_xref="UniProtKB/TrEMBL:D2TLS0" FT /protein_id="CBG87279.1" FT /translation="MKRAVVVFSGGQDSTTCLVQALHQYDEVHCVTFDYGQRHRAEIDV FT ARELALKLGARAHKVLDVTLLSELAVSSLTRDNIPVPDYEPDADGIPNTFVPGRNILFL FT TLAAIYAYQVKAQAVITGVCETDFSGYPDCRDEFVKALNHAVTLGMAKEIRFETPLMWL FT DKAETWALADYWGELERVREETLTCYNGIKGDGCGQCAACNLRANGLNHYLADKPAVMA FT AMKQKTGLQ" FT misc_feature complement(556076..556597) FT /gene="queC" FT /locus_tag="ROD_04991" FT /note="HMMPfam hit to PF06508, Exoenzyme S synthesis FT protein B/queuosine synthesis, score 5.8e-113" FT /inference="protein motif:PFAM:PF06508" FT CDS complement(556668..558368) FT /transl_table=11 FT /locus_tag="ROD_05001" FT /product="putative substrate-binding protein" FT /db_xref="GOA:D2TLS1" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:D2TLS1" FT /protein_id="CBG87280.1" FT /translation="MRLLNRLNQYQRLWQPSAGEPQSVTVSKLAERCFCSERHIRTLLR FT QAQEAGWLVWQAQSGRGKRGLLRFLVTPESLRTLMMEQALEKGQQLSVLELAQLAPGEL FT RAILQPFMGGQWQNDTPTLRIPYYRPLDPLQPGFLPGRAEQHLAGQIYSGLTRFDSETQ FT SPCGDLAHHWDISDDGLRWDFYIRSTLYWHNGDRVETAQLHQRLLMLLALPALNRLFIS FT VKAIEITHPQCLTFILHHPDFWLAHRLASYCSHLAHPQQPEIGTGPFRLTLFTPELVRL FT ESHDRYHLSHPLLKAIEYWITPQLFMQDLGTSCRHPVQITIGKPEELATVSPVSSGISL FT GFCYLTLRKSARLNVQQARRLVDIIHRSSLLETLEVGENLITPSNALLPGWSIPHWDGL FT ESVELPKKLTLVYHLPVELHTMAERLRHALASLDCQLTLIFHHAKNWDGCHALADADLM FT MGDRLIGEAPEYTLEQWLRCDVLWPHVLDAPAFSHLQATLDSLQIRQEEEHRHAALRQV FT FASLMNDATLTPLFNYRYRISAPPGVNGVRLNPRGWFAFSEAWLPPPGR" FT misc_feature complement(557460..557879) FT /locus_tag="ROD_05001" FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding protein, family 5, score 2.3e-20" FT /inference="protein motif:PFAM:PF00496" FT misc_feature complement(558234..558299) FT /note="Predicted helix-turn-helix motif with score FT 1278.000, SD 3.54 at aa 24-45, sequence FT VTVSKLAERCFCSERHIRTLLR" FT CDS 558469..559287 FT /transl_table=11 FT /gene="cof" FT /locus_tag="ROD_05011" FT /product="putative hydrolase" FT /db_xref="GOA:D2TLS2" FT /db_xref="InterPro:IPR000150" FT /db_xref="InterPro:IPR006379" FT /db_xref="InterPro:IPR013200" FT /db_xref="InterPro:IPR023214" FT /db_xref="InterPro:IPR023938" FT /db_xref="UniProtKB/TrEMBL:D2TLS2" FT /protein_id="CBG87281.1" FT /translation="MARLAAFDMDGTLLMPNHLMGEETLSTLARLRERDITLAFATGRH FT VLEMRHLLGSFSLDAFLITGNGTRIHSLEGEVLHRQDLDPTVAERVLHQNWDTAASMHI FT FNDNGWFTGQDIPELLKAHVYSGFRYQVVDVKRIPTDRVTKICFCGDHDDLIRLKAQLE FT EALGAQAHLCFSAVNCLEVLPVGCNKGSALAVLSQHLGLSMAECMAFGDAMNDREMLGS FT VGRGLIMGNAMPQLIAELPHLPVIGHCRNQAVSHFLTHWLDNPHLPYSPE" FT misc_feature 558478..558513 FT /note="PS01228 Hypothetical cof family signature 1." FT /inference="protein motif:Prosite:PS01228" FT misc_feature 558481..559242 FT /gene="cof" FT /locus_tag="ROD_05011" FT /note="HMMPfam hit to PF08282, HAD superfamily FT hydrolase-like, type 3, score 6.9e-63" FT /inference="protein motif:PFAM:PF08282" FT misc_feature 559096..559164 FT /note="PS01229 Hypothetical cof family signature 2." FT /inference="protein motif:Prosite:PS01229" FT CDS complement(559334..560386) FT /transl_table=11 FT /locus_tag="ROD_05021" FT /product="putative lyase" FT /db_xref="GOA:D2TLS3" FT /db_xref="InterPro:IPR001926" FT /db_xref="UniProtKB/TrEMBL:D2TLS3" FT /protein_id="CBG87282.1" FT /translation="MMNSTWVKNAINEINADYHRSADTHLIRLPLPAFPGIQLYLKDES FT THPTGSLKHRLARSLFLYGLCNGWITEGTTIIESSSGSTAVSEAYFARLLGLPFIAVMP FT ACTAKRKIEQIEFYGGRCHFVESACEIYAASEQLARELNGHYMDQFTYAERATDWRGNN FT NIADSIFRQMQCEPNPVPAHIVMSAGTGGTSATIGRYIRCQGHATRLLVVDPENSVFLP FT YWQSRDAPLRSPTGSKIEGIGRPRVEPSFIPDVVDEMLRVPDAASVATAHWLETQLGRK FT VGASTGTNVWGMLQLAARMRDAGETGSLVTLLCDSGDRYLETYYNTQWVEANIGDLTPW FT QAELARLLNR" FT misc_feature complement(559439..560323) FT /locus_tag="ROD_05021" FT /note="HMMPfam hit to PF00291, Pyridoxal FT phosphate-dependent enzyme, beta subunit, score 9.5e-57" FT /inference="protein motif:PFAM:PF00291" FT CDS 560499..560957 FT /transl_table=11 FT /locus_tag="ROD_05022" FT /product="putative transcriptional regulator" FT /db_xref="GOA:D2TLS4" FT /db_xref="InterPro:IPR000485" FT /db_xref="InterPro:IPR011008" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR019885" FT /db_xref="InterPro:IPR019887" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:D2TLS4" FT /protein_id="CBG87283.1" FT /translation="MLDKIDRKLLALLQQDCTLSLQALADAVNLTTTPCWKRLKRLEDD FT GILTGRVALLDAEKLGLGLTAFVLIKTQHHSSDWYCRFVTVVSEMPEVLGFWRMAGEYD FT YLMRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTALPIE" FT misc_feature 560553..560618 FT /note="Predicted helix-turn-helix motif with score FT 1276.000, SD 3.53 at aa 19-40, sequence FT LSLQALADAVNLTTTPCWKRLK" FT misc_feature 560556..560636 FT /note="PS00519 Bacterial regulatory proteins, asnC family FT signature." FT /inference="protein motif:Prosite:PS00519" FT misc_feature 560694..560924 FT /locus_tag="ROD_05022" FT /note="HMMPfam hit to PF01037, Bacterial regulatory FT proteins, AsnC/Lrp, score 6.5e-29" FT /inference="protein motif:PFAM:PF01037" FT CDS 560998..562770 FT /transl_table=11 FT /gene="mdlA" FT /locus_tag="ROD_05031" FT /product="putative ABC transporter, ATP-binding/permease FT protein" FT /db_xref="GOA:D2TLS5" FT /db_xref="InterPro:IPR001140" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR011527" FT /db_xref="InterPro:IPR017871" FT /db_xref="InterPro:IPR017940" FT /db_xref="UniProtKB/TrEMBL:D2TLS5" FT /protein_id="CBG87284.1" FT /translation="MRLFAQLSWYFRREWRRYLGAVALLILIAILQLIPPKVVGIVVDG FT VTVQHFTTQRVLMWIGTIALIAVVVYLLRYVWRVLLFGASYQLAVELREDYYRQLSRQH FT PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLF FT ALLPMPVMALMIKRYGDKLHDRFRLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSAL FT FAADAQDTGQKNLRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVQGTLTLGQLTSFM FT MYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVNDGTEPVPEGRGELAVAIR FT EFRYPHTAHPALENVDFRLKPGQMLGICGPTGAGKSTVLSLIQRHFDINEGDVCFHDIP FT LPRLQLDSWRRRLAVVSQTPFLFSDTVANNIALGCPNATQQEIEHAARLASVHEDILRL FT PQGYGTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ FT WGEGRTVIISAHRLSALTEANEIIVMQHGHIMQRGDHEALVEQAGWYRDMYRYQQLEAA FT LDEAPESEEEAVNA" FT misc_feature 561049..561870 FT /gene="mdlA" FT /locus_tag="ROD_05031" FT /note="HMMPfam hit to PF00664, ABC transporter, FT transmembrane region, score 4.1e-31" FT /inference="protein motif:PFAM:PF00664" FT misc_feature join(561058..561126,561169..561228,561382..561450, FT 561463..561522,561733..561801,561829..561897) FT /gene="mdlA" FT /locus_tag="ROD_05031" FT /note="6 probable transmembrane helices predicted for FT ROD05031 by TMHMM2.0 at aa 21-43, 58-77, 129-151, 156-175, FT 246-268 and 278-300" FT misc_feature 562081..562635 FT /gene="mdlA" FT /locus_tag="ROD_05031" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 3e-55" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 562102..562125 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 562414..562458 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT CDS 562763..564541 FT /transl_table=11 FT /gene="mdlB" FT /locus_tag="ROD_05041" FT /product="putative ABC transporter, ATP-binding/permease FT protein" FT /db_xref="GOA:D2TLS6" FT /db_xref="InterPro:IPR001140" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR011527" FT /db_xref="InterPro:IPR017871" FT /db_xref="InterPro:IPR017940" FT /db_xref="UniProtKB/TrEMBL:D2TLS6" FT /protein_id="CBG87285.1" FT /translation="MRSFAQLWPTLKRLLAYGSPWRKPLGVAVIMLWVAAAAEVSGPLL FT ISYFIDNMVAKNHLPLGIVAGLIAAYIGLQILAASLHYAQSLLFNRAAVGVVQQLRTDV FT MDAALRQPLSEFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSL FT DWRMALVAILIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQ FT QVRFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFSFTSAGTIEV FT GVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQRYGEDVRPLTSGQ FT IEIDDVSFAYRDDHLVLQNISLSVPSRSFVALVGHTGSGKSTLASLLMGYYPLRHGEIR FT LDGRPLSTLGHSALRQGVAMVQQDPVVMADTFLANVTLGRDISEEQVWQALETVQLAEL FT ARGMSEGIHTRLGEQGNNLSVGQKQLLALARVLVATPQILILDEATASIDSGTEQAIQQ FT ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVERGTHHQLLAARGRYWQMYQLQL FT AGEELAASVREEAHPA" FT sig_peptide 562763..562876 FT /gene="mdlB" FT /locus_tag="ROD_05041" FT /note="Signal peptide predicted for ROD05041 by SignalP 2.0 FT HMM (Signal peptide probability 0.804) with cleavage site FT probability 0.427 between residues 38 and 39" FT misc_feature join(562832..562900,562943..563011,563174..563242, FT 563255..563317,563507..563575) FT /gene="mdlB" FT /locus_tag="ROD_05041" FT /note="5 probable transmembrane helices predicted for FT ROD05041 by TMHMM2.0 at aa 24-46, 61-83, 138-160, 165-185 FT and 249-271" FT misc_feature 562835..563656 FT /gene="mdlB" FT /locus_tag="ROD_05041" FT /note="HMMPfam hit to PF00664, ABC transporter, FT transmembrane region, score 7.1e-30" FT /inference="protein motif:PFAM:PF00664" FT misc_feature 563861..564412 FT /gene="mdlB" FT /locus_tag="ROD_05041" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 4.8e-43" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 563882..563905 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 564191..564235 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT CDS 564761..565099 FT /transl_table=11 FT /gene="glnK" FT /locus_tag="ROD_05051" FT /product="nitrogen regulatory protein P-II" FT /db_xref="GOA:D2TLS7" FT /db_xref="InterPro:IPR002187" FT /db_xref="InterPro:IPR002332" FT /db_xref="InterPro:IPR011322" FT /db_xref="InterPro:IPR015867" FT /db_xref="InterPro:IPR017918" FT /db_xref="UniProtKB/TrEMBL:D2TLS7" FT /protein_id="CBG87286.1" FT /translation="MKLVTVVIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAEL FT YRGAEYSVNFLPKVKIDVAIADDQLEEVVDVISKAAYTGKIGDGKIFVAELQRVIRIRT FT GEADEAAL" FT misc_feature 564770..565075 FT /gene="glnK" FT /locus_tag="ROD_05051" FT /note="HMMPfam hit to PF00543, Nitrogen regulatory protein FT PII, score 1.6e-72" FT /inference="protein motif:PFAM:PF00543" FT misc_feature 564896..564913 FT /note="PS00496 P-II protein urydylation site." FT /inference="protein motif:Prosite:PS00496" FT misc_feature 565007..565048 FT /note="PS00638 P-II protein C-terminal region signature." FT /inference="protein motif:Prosite:PS00638" FT CDS 565131..566417 FT /transl_table=11 FT /gene="amtB" FT /locus_tag="ROD_05061" FT /product="ammonia channel precursor (ammonia transporter)" FT /db_xref="GOA:D2TLS8" FT /db_xref="InterPro:IPR001905" FT /db_xref="InterPro:IPR018047" FT /db_xref="InterPro:IPR024041" FT /db_xref="UniProtKB/TrEMBL:D2TLS8" FT /protein_id="CBG87287.1" FT /translation="MKIATMRTGLATLAMLPGLAMAAPAVADKADNAFMMICTALVLFM FT TIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIMWVVFGYSLAFGEGNNFFGNVNWVM FT LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYI FT PIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPM FT VFTGTAILYVGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLL FT GACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVH FT GVCGIVGCILTGVFASGALGGVGFADGVTMAHQVLVQLESIAITIVWSGVVAFIGYKLA FT DMTVGLRVPEEQEREGLDVNSHGENAYNA" FT sig_peptide 565131..565196 FT /gene="amtB" FT /locus_tag="ROD_05061" FT /note="Signal peptide predicted for ROD05061 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.592 between residues 22 and 23" FT misc_feature join(565149..565208,565236..565304,565317..565385, FT 565488..565556,565575..565643,565686..565745, FT 565782..565841,565869..565937,565971..566039, FT 566049..566102,566139..566207,566250..566318) FT /gene="amtB" FT /locus_tag="ROD_05061" FT /note="12 probable transmembrane helices predicted for FT ROD05061 by TMHMM2.0 at aa 7-26, 36-58, 63-85, 120-142, FT 149-171, 186-205, 218-237, 247-269, 281-303, 307-324, FT 337-359 and 374-396" FT misc_feature 565227..566408 FT /gene="amtB" FT /locus_tag="ROD_05061" FT /note="HMMPfam hit to PF00909, Rh-like protein/ammonium FT transporter, score 1.1e-188" FT /inference="protein motif:PFAM:PF00909" FT misc_feature 565491..565523 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 565674..565751 FT /note="PS01219 Ammonium transporters signature." FT /inference="protein motif:Prosite:PS01219" FT misc_feature 566142..566174 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(566548..567417) FT /transl_table=11 FT /locus_tag="ROD_05071" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TLS9" FT /protein_id="CBG87288.1" FT /translation="MVDVITDYKEIRRKIEEVSKEDFDKNELLWAIADGGTALIDTLTS FT LPVLNTSSAIIHEIYSFINNHPAVPIPNPWFVWNKHDEALSPETIQYLKKRGYVSAAST FT AVAVAGAGASLVTCVDIGVVGQGGAACASTLKHLTGLRNIASAHKESATIQAWIDVIIT FT MKNLKLAVRGGQVSTAVISAIPALSTAVSIISGAVSAAAKVGISFKYSNVCRFTAMDLH FT WRAMQETILIETLGQRKKEDTGPARQILFELFERRGLTGFIWGQHHVEKLIKEPAGWMA FT IADKLLII" FT misc_feature complement(567025..567057) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(567986..568846) FT /transl_table=11 FT /gene="tesB" FT /locus_tag="ROD_05081" FT /product="acyl-CoA thioesterase II" FT /EC_number="3.1.2.-" FT /db_xref="GOA:D2TLT0" FT /db_xref="InterPro:IPR003703" FT /db_xref="UniProtKB/TrEMBL:D2TLT0" FT /protein_id="CBG87289.1" FT /translation="MSQALNNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALY FT AAKESVPQERLVHSFHSYFLRPGDSQKPIIYDVEVLRDGNSFSARRVAAVQNGKPIFYM FT TASFQAPEGGFEHQKTMPHAPAPDGLKSETEIAQTLAHLLPQALKDKFLCDRPLEVRPV FT EFHNPLKGHVAEPARQVWIRANGALPDDIRVHQYLLGYASDLNFLPVALQPHGMGFLEK FT GIQIATIDHSMWFHRPFDLNQWLLYSVESTSASSARGFVRGEFYTQEGVLVASTVQEGV FT MRNRN" FT misc_feature complement(568004..568408) FT /gene="tesB" FT /locus_tag="ROD_05081" FT /note="HMMPfam hit to PF02551, Acyl-CoA thioesterase, score FT 3.4e-75" FT /inference="protein motif:PFAM:PF02551" FT misc_feature complement(568502..568798) FT /gene="tesB" FT /locus_tag="ROD_05081" FT /note="HMMPfam hit to PF02551, Acyl-CoA thioesterase, score FT 5.3e-43" FT /inference="protein motif:PFAM:PF02551" FT CDS 569061..569630 FT /transl_table=11 FT /locus_tag="ROD_05091" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TLT1" FT /protein_id="CBG87290.1" FT /translation="MKLVHIVSGLAVAVSLAACADKSADIQTPAPNPNTSINATQSTIQ FT QPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLAQKAVRTEGKQAPFSFVLPF FT NPADVKPNARILLSAAITVNDKLVFITDTVQPVLNQGGTKADLTLVPVQQTAVPVQASG FT GATTTVPSTSPTQVTPSSAVPAPTQF" FT sig_peptide 569061..569120 FT /locus_tag="ROD_05091" FT /note="Signal peptide predicted for ROD05091 by SignalP 2.0 FT HMM (Signal peptide probability 0.997) with cleavage site FT probability 0.981 between residues 20 and 21" FT misc_feature 569085..569117 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(569662..569973) FT /transl_table=11 FT /locus_tag="ROD_05101" FT /product="putative methyltransferase" FT /db_xref="GOA:D2TLT2" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR014048" FT /db_xref="UniProtKB/TrEMBL:D2TLT2" FT /protein_id="CBG87291.1" FT /translation="MDRQDTFPQRVWQIVASIPEGCVTTYGDVAKLAGSPRAARQVGGV FT LKRLPEGSTLPWHRVVNRHGAISLTGPDLQRQRQALLSEGIQVSGSGKIDLQRYRWIY" FT misc_feature complement(569707..569964) FT /locus_tag="ROD_05101" FT /note="HMMPfam hit to PF01035, FT Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA FT binding, score 2.8e-42" FT /inference="protein motif:PFAM:PF01035" FT misc_RNA 570136..570233 FT /note="Rfam:RF00169;SRP_bact;Score=64.35;positions 1 to 60" FT CDS complement(570326..571876) FT /transl_table=11 FT /locus_tag="ROD_05121" FT /product="putative signal transduction protein" FT /db_xref="InterPro:IPR001633" FT /db_xref="InterPro:IPR024744" FT /db_xref="UniProtKB/TrEMBL:D2TLT3" FT /protein_id="CBG87292.1" FT /translation="MTTRHLVSLAAGVLILSIIVPVGLSIWLAQRQVEKKFIEELDNYS FT ALVYERTERVVQQAKKALQEIEKVDVTPCTHDHLLAMRRISFSYRYVQEVLYLEDNAPR FT CSSLEQESHSVVFPPPQRISADGYRAWFTKHNDLGIERYMTALGKGRYIVMIDPASFID FT VVPFGAWQIDVAIIGAKQNSVIASSDALPPAILQYTQQTTPRQLERHGNIYVIRPFPEM FT GISIVSWASRHPLDNIWYRQALIWIPAGIAPGLLAAVLIFRILRRLQSPHHRLRDAIHN FT RNIKVHYQPVVSLASGKVVGAEALARWPQPDGCYLSPDFFIPLAEQTGLTEPLTRLIIE FT TVFEEMGKWLRQHPEQHISINIESEDLASEKLPALLSTLLNRHQIAPSQIALELTEREF FT ADPKTSSPIVARYRKAGHAVYIDDFGTGYSSLSYLQNLEVDILKIDKSFVDALEYKNVT FT PHIIEMAKALKLKMIAEGIETAKQEEWLRQHGVHYGQGWLYSKALPKAEFILWAEKRL" FT misc_feature complement(570371..571078) FT /locus_tag="ROD_05121" FT /note="HMMPfam hit to PF00563, EAL, score 9.4e-110" FT /inference="protein motif:PFAM:PF00563" FT misc_feature complement(join(571082..571150,571793..571861)) FT /locus_tag="ROD_05121" FT /note="2 probable transmembrane helices predicted for FT ROD05121 by TMHMM2.0 at aa 6-28 and 243-265" FT sig_peptide complement(571802..571876) FT /locus_tag="ROD_05121" FT /note="Signal peptide predicted for ROD05121 by SignalP 2.0 FT HMM (Signal peptide probability 0.664) with cleavage site FT probability 0.313 between residues 25 and 26" FT CDS complement(572225..572695) FT /transl_table=11 FT /locus_tag="ROD_05131" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR019713" FT /db_xref="UniProtKB/TrEMBL:D2TLT4" FT /protein_id="CBG87293.1" FT /translation="MTEIQRLLTETIEDLNEREKRDNRPRFSISFIRKHPGLFIGMYIA FT WLATLAVMLQSDTLVDSVWLLVVLFILLNGFFFFDVAPRYRYEDIDVLDLRVCYNGEWY FT NTRFVPPTLINTILHSPRVANEHKTQLQKMLSRKGELSFYDIFTLARAEAQP" FT misc_feature complement(join(572459..572512,572540..572608)) FT /locus_tag="ROD_05131" FT /note="2 probable transmembrane helices predicted for FT ROD05131 by TMHMM2.0 at aa 30-52 and 62-79" FT CDS complement(572796..573359) FT /transl_table=11 FT /gene="maa" FT /locus_tag="ROD_05141" FT /product="maltose O-acetyltransferase" FT /EC_number="2.3.1.79" FT /note="unknown EC_number=" FT /db_xref="GOA:D2TLT5" FT /db_xref="InterPro:IPR001451" FT /db_xref="InterPro:IPR011004" FT /db_xref="InterPro:IPR018357" FT /db_xref="InterPro:IPR024688" FT /db_xref="UniProtKB/TrEMBL:D2TLT5" FT /protein_id="CBG87294.1" FT /translation="MSAEKQKMIAGERYRPSDETLCQDRLRARQWLHRYNHTAPDEKVE FT RREILSALLGRCDNPYIEPSFRCDYGYNIFLGKAFYANFDCVLLDVCPIHIGDNCMLAP FT GVHIYTATHPLDAAERNSGLEFGKPVTIGDNVWIGGRAVINPGVTIGDNVVVASGAVVT FT KNVPDDVVVAGNPARIIKRLSGEL" FT misc_feature complement(572862..572948) FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT /inference="protein motif:Prosite:PS00101" FT misc_feature complement(572868..572921) FT /gene="maa" FT /locus_tag="ROD_05141" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.098" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(572922..572975) FT /gene="maa" FT /locus_tag="ROD_05141" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.17" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(573030..573083) FT /gene="maa" FT /locus_tag="ROD_05141" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 0.048" FT /inference="protein motif:PFAM:PF00132" FT CDS complement(573537..573755) FT /transl_table=11 FT /locus_tag="ROD_05151" FT /product="haemolysin expression regulatory protein" FT /db_xref="InterPro:IPR007985" FT /db_xref="UniProtKB/TrEMBL:D2TLT6" FT /protein_id="CBG87295.1" FT /translation="MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYS FT AADHRLAELTMNKLYDKIPTSVWKFIR" FT misc_feature complement(573549..573719) FT /locus_tag="ROD_05151" FT /note="HMMPfam hit to PF05321, Haemolysin expression FT modulating, score 3e-37" FT /inference="protein motif:PFAM:PF05321" FT CDS complement(573783..574157) FT /transl_table=11 FT /locus_tag="ROD_05161" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR019693" FT /db_xref="UniProtKB/TrEMBL:D2TLT7" FT /protein_id="CBG87296.1" FT /translation="MDEYSPKRHDIAQLKFLCETLYHDSLANLEESNHGWVNDPTSAIN FT LQLNELIEHIATFALNYKIKYNEDNKLIEQLDEYLDDTFMLFSSYGINTQDLQKWRKSG FT NRLFRCFVTATRANPVSLSC" FT CDS complement(574651..577800) FT /transl_table=11 FT /gene="acrB" FT /locus_tag="ROD_05171" FT /product="acriflavin resistance protein B" FT /db_xref="GOA:D2TLT8" FT /db_xref="InterPro:IPR001036" FT /db_xref="InterPro:IPR004764" FT /db_xref="UniProtKB/TrEMBL:D2TLT8" FT /protein_id="CBG87297.1" FT /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTI FT AATYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQ FT VQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMK FT DTISRTSGVGDVQLFGSQYAMRIWMDPTALNNYQLTPVDVINAIKAQNAQVAAGQLGGT FT PPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIAKF FT NGQPASGLGIKLATGANALDTASAIRAELVKMEPFFPSGLKIVYPYDTTPFVKISIHEV FT VKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV FT LAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAF FT FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFN FT RMFDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAFLFVRLPSSFLPDEDQGVFLSMA FT QLPAGATQERTQKVLDEMTDYFLTKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWG FT ERPGDENKVEAITQRASAAFSQIKDAMVFAFNLPAIVELGTATGFDFQLIDQAGLGHEK FT LTQARNQLFGEVAKHPDLLVGVRPNGLEDTPQFKIDIDQEKAQALGVSISDINTTLGAA FT WGGSYVNDFIDRGRVKKVYVMSQAKYRMLPEDIGNWYVRGSNGQMVPFSAFSTSRWEYG FT SPRLERYNGLPSMEILGQAAPGKSTGEAMAMMEELASKLPSGIGYDWTGMSYQERLSGN FT QAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVG FT LLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRMRLRPILMTSLAFILGVMPL FT VISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFSRKSEDVEHSHAVEH FT R" FT misc_feature complement(574711..577800) FT /gene="acrB" FT /locus_tag="ROD_05171" FT /note="HMMPfam hit to PF00873, Acriflavin resistance FT protein, score 0" FT /inference="protein motif:PFAM:PF00873" FT misc_feature complement(join(574714..574782,574810..574878, FT 574957..575025,575038..575106,575125..575184, FT 576109..576177,576325..576393,576421..576489, FT 576628..576696,576724..576783,577705..577773)) FT /gene="acrB" FT /locus_tag="ROD_05171" FT /note="11 probable transmembrane helices predicted for FT ROD05171 by TMHMM2.0 at aa 10-32, 340-359, 369-391, FT 438-460, 470-492, 542-564, 873-892, 899-921, 926-948, FT 975-997 and 1007-1029" FT misc_feature complement(575293..575316) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(577823..579016) FT /transl_table=11 FT /gene="acrA" FT /locus_tag="ROD_05181" FT /product="acriflavin resistance protein A" FT /db_xref="GOA:D2TLT9" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:D2TLT9" FT /protein_id="CBG87298.1" FT /translation="MNKNRGLTPLAIVLMLSGSLALTGCDDKQAQQGGQQMPEVGVVTL FT KTEPLQITTELPGRTSAFRIAEVRPQVSGIILKRNFEEGSDIEAGVSLYQIDPATYQAS FT YESAKGDLAKAQAAASLAQVTVNRYKKLIGTQYISKQDYDQALADAQQANAAVTAAKAA FT VETARINLAYTKVTSPISGRIGKSAVTEGALVQNGQATALATVQQLDPIYVDVTQSSND FT FLRLKQELANGTLKQENGKAKVELVTSDGIKFPQSGTLEFSDVTVDQTTGSITLRAVFP FT NPDHTLLPGMFVRARLEEGTNPNALLVPQQGVTRTPRGDATALVVGADNKVETRQIVAT FT QAIGDKWLVTDGLKPGDRVVVTGLQKVRPGVQVKAQEITADNKQQAADGNQPEQSKS" FT misc_feature complement(577934..578827) FT /gene="acrA" FT /locus_tag="ROD_05181" FT /note="HMMPfam hit to PF00529, Secretion protein HlyD, FT score 1.3e-94" FT /inference="protein motif:PFAM:PF00529" FT misc_feature complement(578942..578974) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT sig_peptide complement(578945..579016) FT /gene="acrA" FT /locus_tag="ROD_05181" FT /note="Signal peptide predicted for ROD05181 by SignalP 2.0 FT HMM (Signal peptide probability 0.997) with cleavage site FT probability 0.664 between residues 24 and 25" FT CDS 579158..579829 FT /transl_table=11 FT /gene="acrR" FT /locus_tag="ROD_05191" FT /product="acrAB operon repressor" FT /db_xref="GOA:D2TLU0" FT /db_xref="InterPro:IPR001647" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR011075" FT /db_xref="InterPro:IPR012287" FT /db_xref="InterPro:IPR013572" FT /db_xref="InterPro:IPR015893" FT /db_xref="InterPro:IPR023772" FT /db_xref="InterPro:IPR023773" FT /db_xref="UniProtKB/TrEMBL:D2TLU0" FT /protein_id="CBG87299.1" FT /translation="MARKTKQQAQETRQHILDVALRLFSQQGVSSTSLAEIAKAAGVTR FT GAIYWHFKNKSDLFSEIWELSESNIGELETEYQAKFPDDPLSVLREILVHLLESTVTEE FT RRRLLMEIIFHKCEFVGEMAVVQQAQRNICVESYDRIEQTLTHCINARMLPANLLTRRA FT AIIMRGYISGIMENWLFAPHSFDLKKEARDYVAVLLEMFMFCPTLRAAAPDASAGAGLQ FT E" FT misc_feature 579203..579343 FT /gene="acrR" FT /locus_tag="ROD_05191" FT /note="HMMPfam hit to PF00440, Transcriptional regulator, FT TetR-like, DNA-binding, bacterial/archaeal, score 2.6e-24" FT /inference="protein motif:PFAM:PF00440" FT misc_feature 579239..579331 FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT /inference="protein motif:Prosite:PS01081" FT misc_feature 579251..579316 FT /note="Predicted helix-turn-helix motif with score FT 2353.000, SD 7.20 at aa 32-53, sequence FT TSLAEIAKAAGVTRGAIYWHFK" FT misc_feature 579407..579769 FT /gene="acrR" FT /locus_tag="ROD_05191" FT /note="HMMPfam hit to PF08361, Transcriptional regulator, FT MAATS, C-terminal, score 7.5e-85" FT /inference="protein motif:PFAM:PF08361" FT CDS 579932..583294 FT /transl_table=11 FT /gene="kefA" FT /locus_tag="ROD_05201" FT /product="potassium efflux protein" FT /db_xref="GOA:D2TLU1" FT /db_xref="InterPro:IPR006685" FT /db_xref="InterPro:IPR006686" FT /db_xref="InterPro:IPR010920" FT /db_xref="InterPro:IPR011014" FT /db_xref="InterPro:IPR011066" FT /db_xref="UniProtKB/TrEMBL:D2TLU1" FT /protein_id="CBG87300.1" FT /translation="MTMLQLFKRSSRRVFFMAAVCLLVLSCPPLVLARASANGDLPAKA FT EVQSQLEALNKQKSLSPLDKLVQQDLTDTLTTLDKIEQVKEETVQLRQKVTQAPEKMRQ FT ATEALNALSDVDNDDETRKTLSTLSLRQLELRVAQALDDLQNAQNDLAAYNSQLVSLQT FT QPERVQNAMYAASQQLQQIRNQLDGTSAGESALRPTQQALLQARQVLLNAQIEQQRKSL FT EGNTVLQDMLQKQRDYVTANSNRLEHQLQLLQEAVNSKRLTLTEKTAQEAISPDETARI FT QANPLVQQELDINHQLSQRLITATENGNSLMQQNIRVKNWLDRALQSERNIKEQIAVLK FT GSLLLSRILYQQQQTLPSADELSDMTNRIADLRLEQFEVNQQRDALFQNDAYVARLEEG FT HASEVNDEVHDALLQVVDMRRELLDQLNKQLGNQLMMAINLQINQQQLMSVSTSLKEIL FT TQQIFWVNSNRPMDWDWIKAFPQTLKEQFKAMKITVNWEKAWPAVFIAFLAGLPLLLIA FT GVIRWRLKWLKAYQQKLAAAVGSLRNDSQLNTPKAILIDLIRALPVCLAILALGLILLT FT MQLNISDLLWAFSKKLAIFWLVFGLCWKVLEKDGVAIRHFGMSAQLTSHWRRQIVRVSL FT ALLPLHFWSVMAELSPLHLMDDVLGQAMIFLNLLLIALLVWPMCRESWRDKESHSLRLV FT TITILSIIPLALMVLTATGYFYTTLRLAGRWIETVYLVIIWNLLYQTVLRGLSVAARRI FT AWRRAQARRQNLVKEGAEGLEPQEEPAIALEQVNQQTLRITMLLMVSLFAVVFWAIWSD FT LITVFSYLDSITLWHYNGTEAGAAVVKNVTMGSLLFAIIASMVAWALIRNLPGLLEVLV FT LSRLKMRQGASYAITTILNYIIIAVGAMTVFGSLGVSWDKLQWLAAALSVGLGFGLQEI FT FGNFVSGLIILFERPVRIGDTVTIGTFSGTVSKIRIRATTITDFDRKEVIIPNKAFVTE FT RLINWSLSDTTTRLVIRIGVAYGSDLEKVRKVLQQAAMEHPKVMHDPQPEVFFTTFGAS FT TLDHELRLYVRELRDRSRTVDELNRAIDRLCRENDIDIAFNQLEVHLRNEKGDEVKEVT FT REIKGDDPTPAMG" FT sig_peptide 579932..580030 FT /gene="kefA" FT /locus_tag="ROD_05201" FT /note="Signal peptide predicted for ROD05201 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.835 between residues 33 and 34" FT misc_feature join(579968..580036,581429..581497,581600..581668, FT 581681..581749,581819..581872,581900..581959, FT 581996..582064,582107..582175,582317..582385, FT 582452..582511,582572..582640,582683..582751) FT /gene="kefA" FT /locus_tag="ROD_05201" FT /note="12 probable transmembrane helices predicted for FT ROD05201 by TMHMM2.0 at aa 13-35, 500-522, 557-579, FT 584-606, 630-647, 657-676, 689-711, 726-748, 796-818, FT 841-860, 881-903 and 918-940" FT misc_feature 579980..580012 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 582587..583192 FT /gene="kefA" FT /locus_tag="ROD_05201" FT /note="HMMPfam hit to PF00924, MscS Mechanosensitive ion FT channel, score 1.5e-89" FT /inference="protein motif:PFAM:PF00924" FT misc_feature 582806..582910 FT /note="PS01246 Uncharacterized protein family UPF0003 FT signature." FT /inference="protein motif:Prosite:PS01246" FT CDS complement(join(583335..583832,584899..585309)) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_05231" FT /product="putative transposase (pseudogene)" FT /note="pseudogene, disrupted by IS102 insertion" FT misc_feature complement(join(583401..583832,584899..585309)) FT /locus_tag="ROD_05231" FT /note="HMMPfam hit to PF04754, Transposase (putative), FT YhgA-like, score 1.2e-155" FT /inference="protein motif:PFAM:PF04754" FT repeat_region 583833..583841 FT /note="9 bp direct repeat flanking IS102" FT repeat_region 583842..584898 FT /note="Insertion sequence IS102 first identified in FT Escherichia coli pSC101 (IS5 family). 100% ID at DNA level FT (blastn), 100% ID at protein level (tblastx). Has 18 bp FT perfect inverted repeats and is flanked by 9 bp direct FT repeats. 1 of 12 identical IS102 elements in CR chromosome" FT repeat_region 583842..583859 FT /note="18 bp terminal inverted repeat of IS102" FT CDS 583874..584842 FT /transl_table=11 FT /locus_tag="ROD_05221" FT /product="IS102 transposase" FT /db_xref="InterPro:IPR002559" FT /db_xref="UniProtKB/TrEMBL:D2TIM3" FT /protein_id="CBG87302.1" FT /translation="MKDQITHPPDNTDHSVAKQKFRITNWSTYNKALINRGSLTFWLDD FT EAIQAWYESATPSSRGRPQRYSDLAITTVLVIKRVFRLTLRAAQGFIDSIFALMNVPLR FT CPDYTSVSKRAKSVNVSFKTSTRGEIAHLVIDSTGLKVFGEGEWKVRKHGKERRRIWRK FT LHLAVDSNTHEVVCADLSLNNVTDSEAFPGLIRQTHRKIRAAAADGAYDTRLCHDELRR FT KKISALIPPRKGAGYWPGEYADRNRAVANQRMTGSNARWKWTTDYNRRSIAETAMYRVK FT QLFGGSLTLRDYDGQVAEAMALVRALNKMTKAGMPESVRIA" FT misc_feature 584267..584806 FT /locus_tag="ROD_05221" FT /note="HMMPfam hit to PF01609, Transposase, IS4-like, score FT 9.3e-30" FT /inference="protein motif:PFAM:PF01609" FT repeat_region complement(584881..584898) FT /note="18 bp terminal inverted repeat of IS102" FT repeat_region 584899..584907 FT /note="9 bp direct repeat flanking IS102" FT CDS complement(585378..585545) FT /transl_table=11 FT /locus_tag="ROD_05241" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR019630" FT /db_xref="UniProtKB/TrEMBL:D2TLU3" FT /protein_id="CBG87303.1" FT /translation="MSLENAPDEVKLAVDLIVLLEENQLPPRTVLRALEIVMRDYENKL FT KSSEGASQSG" FT CDS complement(585560..586087) FT /transl_table=11 FT /gene="priC" FT /locus_tag="ROD_05251" FT /product="primosomal replication protein N" FT /db_xref="InterPro:IPR010890" FT /db_xref="UniProtKB/TrEMBL:D2TLU4" FT /protein_id="CBG87304.1" FT /translation="MKTAMLLQKLDDRLAELRQRCAPVAQHATLSPRFDRHLFHTRSTC FT LQACLEEAEANLQALRQAVLQQQRPQVVWLAEHLASQLEAIARESASWSLRAWDSASPA FT LAKWQRRRIQHQEFERRLLEMTRQRKNRLDGAASPSEKQALEHEVVIYEGRLTRCRQAL FT DHIERVLARLTR" FT misc_feature complement(585563..586069) FT /gene="priC" FT /locus_tag="ROD_05251" FT /note="HMMPfam hit to PF07445, Primosomal replication priB FT and priC, score 6.8e-77" FT /inference="protein motif:PFAM:PF07445" FT CDS 586139..586534 FT /transl_table=11 FT /locus_tag="ROD_05261" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR007401" FT /db_xref="UniProtKB/TrEMBL:D2TLU5" FT /protein_id="CBG87305.1" FT /translation="MRHAFIMQRIFLIITGWLAVILGTLGVVLPLLPTTPFILLAAWCF FT ARSSPRFHQWLLYRSWFGSYLRYWQKHKAMPPGAKPRAIILILVTFGVSLWLTPMLWVR FT ILLLVILACLLIFMWRIPVVDEKQQKH" FT misc_feature join(586166..586234,586379..586432,586442..586510) FT /locus_tag="ROD_05261" FT /note="3 probable transmembrane helices predicted for FT ROD05261 by TMHMM2.0 at aa 10-32, 81-98 and 102-124" FT misc_feature 586283..586513 FT /locus_tag="ROD_05261" FT /note="HMMPfam hit to PF04304, Protein of unknown function FT DUF454, score 3.3e-31" FT /inference="protein motif:PFAM:PF04304" FT CDS 586739..587290 FT /transl_table=11 FT /gene="apt" FT /locus_tag="ROD_05271" FT /product="adenine phosphoribosyltransferase" FT /EC_number="2.4.2.7" FT /db_xref="GOA:D2TLU6" FT /db_xref="InterPro:IPR000836" FT /db_xref="InterPro:IPR005764" FT /db_xref="UniProtKB/TrEMBL:D2TLU6" FT /protein_id="CBG87306.1" FT /translation="MTATAQQLEFLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSI FT ELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIDESYELEY FT GTDRLEIHVDAISPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVRDAAFIINLPDLGG FT EARLEKSGIASYSLVSFAGH" FT misc_feature 586826..587236 FT /gene="apt" FT /locus_tag="ROD_05271" FT /note="HMMPfam hit to PF00156, Phosphoribosyltransferase, FT score 6.4e-50" FT /inference="protein motif:PFAM:PF00156" FT misc_feature 587102..587140 FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT /inference="protein motif:Prosite:PS00103" FT CDS 587379..589310 FT /transl_table=11 FT /gene="dnaX" FT /locus_tag="ROD_05281" FT /product="DNA polymerase III subunits gamma and tau" FT /EC_number="2.7.7.7" FT /db_xref="GOA:D2TLU7" FT /db_xref="InterPro:IPR001270" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR003959" FT /db_xref="InterPro:IPR008921" FT /db_xref="InterPro:IPR012763" FT /db_xref="InterPro:IPR021029" FT /db_xref="InterPro:IPR022001" FT /db_xref="InterPro:IPR022754" FT /db_xref="UniProtKB/TrEMBL:D2TLU7" FT /protein_id="CBG87307.1" FT /translation="MSYQVLARKWRPQSFADVVGQEHVLTALANGLSLGRIHHAYLFSG FT TRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDT FT RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLP FT VTILSRCLQFHLKALDVDQIRHQLEHILDEEHIAHEPRALQLLSRAADGSLRDALSLTD FT QAIASGDGQITTQAVSAMLGTLDDDQALSLVEAVVAADGERVMSLVNEAAARGIEWEAL FT LVEMLGLLHRIALVQLSPAALGSDMAMIEVRMRELARTVPPTDVQLYYQTLLIGRKELP FT YAPDRRMGVEMTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMNPTQVPQQSAPAPQQ FT TPAAPLPDATSQVLAARSQLQRAQGATKAKKSEPAAATRARPVNNAALERLASVTERVQ FT ARPAPSALEQAPAKKEAYRWKATTPVAEVKKVVATPKALKKALEHEKTPELAAKLAAEA FT IERDPWAAQVSQLSLPKLVEQVALNAWKKENGNAVCLHLRSSQRHLNSAGAQQKLAEAL FT SELAGTTVELTIVEDDNPATRTPLEWRQAIYEEKLAQARESIVADNNIQNLRRFFDAEL FT DEESIRPI" FT misc_feature 587496..588068 FT /gene="dnaX" FT /locus_tag="ROD_05281" FT /note="HMMPfam hit to PF00004, AAA ATPase, core, score FT 5.6e-11" FT /inference="protein motif:PFAM:PF00004" FT misc_feature 587511..587534 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_RNA 588643..588707 FT /note="Rfam:RF00382;DnaX;Score=69.97;positions 1 to 60" FT CDS 589364..589693 FT /transl_table=11 FT /locus_tag="ROD_05291" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR004401" FT /db_xref="UniProtKB/TrEMBL:D2TLU8" FT /protein_id="CBG87308.1" FT /translation="MFGKGGLGNLMKQAQQMQEKMQQMQEEIAKLEVTGESGAGLVKVT FT INGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG FT FKMPF" FT misc_feature 589394..589669 FT /locus_tag="ROD_05291" FT /note="HMMPfam hit to PF02575, Conserved hypothetical FT protein CHP00103, score 2.7e-52" FT /inference="protein motif:PFAM:PF02575" FT CDS 589693..590298 FT /transl_table=11 FT /gene="recR" FT /locus_tag="ROD_05301" FT /product="recombination protein" FT /db_xref="GOA:D2TLU9" FT /db_xref="InterPro:IPR000093" FT /db_xref="InterPro:IPR003583" FT /db_xref="InterPro:IPR006171" FT /db_xref="InterPro:IPR015967" FT /db_xref="InterPro:IPR023627" FT /db_xref="InterPro:IPR023628" FT /db_xref="UniProtKB/TrEMBL:D2TLU9" FT /protein_id="CBG87309.1" FT /translation="MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQ FT ALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQFSGR FT YFVLMGHLSPLDGIGPDDIGLDRLEQRLSAEPLNEVILATNPTVEGEATANYIAELCAQ FT YGVDASRIAHGVPVGGELEMVDGTTLSHSLAGRHKLKF" FT misc_feature 589804..589929 FT /gene="recR" FT /locus_tag="ROD_05301" FT /note="HMMPfam hit to PF02132, Zinc finger C4-type, RecR, FT score 3.4e-22" FT /inference="protein motif:PFAM:PF02132" FT misc_feature 589861..589923 FT /note="PS01300 RecR protein signature." FT /inference="protein motif:Prosite:PS01300" FT misc_feature 589933..590214 FT /gene="recR" FT /locus_tag="ROD_05301" FT /note="HMMPfam hit to PF01751, TOPRIM, score 1.3e-22" FT /inference="protein motif:PFAM:PF01751" FT CDS 590409..592283 FT /transl_table=11 FT /gene="htpG" FT /locus_tag="ROD_05311" FT /product="chaperone (heat shock protein)" FT /db_xref="GOA:D2TLV0" FT /db_xref="InterPro:IPR001404" FT /db_xref="InterPro:IPR003594" FT /db_xref="InterPro:IPR019805" FT /db_xref="InterPro:IPR020568" FT /db_xref="InterPro:IPR020575" FT /db_xref="UniProtKB/TrEMBL:D2TLV0" FT /protein_id="CBG87310.1" FT /translation="MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADK FT LRFRALSNPDLYEGDGELRVRVSFDKDKRTLTIADNGVGMNRDDVIDHLGTIAKSGTKS FT FLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDQPENGVFWESAGEGEYT FT VADITKDDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKQEEKDGETVV FT SWEKINKAQALWTRNKSEISEDEYKEFYKHIAHDFTDPLSWSHNRVEGKQEYTSLLYIP FT SQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSNDLPLNVSREILQ FT DSSVTRNLRSALTKRVLQMLEKLAKDDAEKYQTFWKQFGLVLKEGPAEDHANQETIAKL FT MRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVL FT LLSDRIDEWMMNYLTEFDGKAFQSVAKADESIEKLADEVDESAKEAEKALEPFVERVKT FT LLGDRVKEVRLTHRLTDTPAIVTTDADEMSTQMAKLFAAAGQAVPEVKYIFELNPDHVL FT VKRTADTEDEAQFKEWVELLLDQALFAERGTLEDPNQFIRRMNQLLVS" FT misc_feature 590481..590510 FT /note="PS00298 Heat shock hsp90 proteins family signature." FT /inference="protein motif:Prosite:PS00298" FT misc_feature 590487..590957 FT /gene="htpG" FT /locus_tag="ROD_05311" FT /note="HMMPfam hit to PF02518, ATP-binding region, FT ATPase-like, score 2.2e-17" FT /inference="protein motif:PFAM:PF02518" FT misc_feature 591063..592031 FT /gene="htpG" FT /locus_tag="ROD_05311" FT /note="HMMPfam hit to PF00183, Heat shock protein Hsp90, FT score 1.5e-114" FT /inference="protein motif:PFAM:PF00183" FT CDS 592702..593346 FT /transl_table=11 FT /gene="adk" FT /locus_tag="ROD_05321" FT /product="adenylate kinase" FT /EC_number="2.7.4.3" FT /db_xref="GOA:D2TLV1" FT /db_xref="InterPro:IPR000850" FT /db_xref="InterPro:IPR006259" FT /db_xref="InterPro:IPR007862" FT /db_xref="UniProtKB/TrEMBL:D2TLV1" FT /protein_id="CBG87311.1" FT /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSEL FT GKKAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIVVD FT YVLEFDVPDELIVDRIVGRRVHAASGRVYHIKFNPPKVEGKDDVTGEDLTTRKDDQEET FT VRKRLVEYHQMTAPLIGYYQKEAEAGNTQYAKVDGTQAVADVRADLEKILG" FT misc_feature 592714..593262 FT /gene="adk" FT /locus_tag="ROD_05321" FT /note="HMMPfam hit to PF00406, Adenylate kinase, score FT 6.1e-100" FT /inference="protein motif:PFAM:PF00406" FT misc_feature 592942..592977 FT /note="PS00113 Adenylate kinase signature." FT /inference="protein motif:Prosite:PS00113" FT misc_feature 593068..593175 FT /gene="adk" FT /locus_tag="ROD_05321" FT /note="HMMPfam hit to PF05191, Adenylate kinase, lid FT region, score 1.5e-21" FT /inference="protein motif:PFAM:PF05191" FT CDS 593526..594488 FT /transl_table=11 FT /gene="hemH" FT /locus_tag="ROD_05331" FT /product="ferrochelatase" FT /EC_number="4.99.1.1" FT /db_xref="GOA:D2TLV2" FT /db_xref="InterPro:IPR001015" FT /db_xref="InterPro:IPR019772" FT /db_xref="UniProtKB/TrEMBL:D2TLV2" FT /protein_id="CBG87312.1" FT /translation="MRQTKTGILLANLGTPDAPTPAAVKRYLRQFLSDRRVVDTPRLLW FT WPLLRGVILPLRSPRVAKLYQSIWMEGGSPLMVYSRQQQQALAARLPETPVALGMSYGS FT PSLESAVDELLASHVDHIVVLPLYPQYSCSTVAAVWDELARILERKRHIPGISFIRDYA FT DDSAYIDALANSARASFARHGEPDLLLLSYHGIPQRYADEGDDYPQRCRDTTRELVSAL FT GLPPEKVMMTFQSRFGREPWLTPYTDETLKMLAEKGTGHIQVMCPGFAADCLETLEEIA FT VQNKEIFLEAGGKKYEYIPALNAAPEHIDMMLKLTAAYR" FT misc_feature 593538..594485 FT /gene="hemH" FT /locus_tag="ROD_05331" FT /note="HMMPfam hit to PF00762, Ferrochelatase, score FT 6.1e-158" FT /inference="protein motif:PFAM:PF00762" FT misc_feature 594090..594146 FT /note="PS00534 Ferrochelatase signature." FT /inference="protein motif:Prosite:PS00534" FT CDS complement(594485..595444) FT /transl_table=11 FT /gene="aes" FT /locus_tag="ROD_05341" FT /product="acetyl esterase" FT /EC_number="3.1.1.-" FT /db_xref="GOA:D2TLV3" FT /db_xref="InterPro:IPR002168" FT /db_xref="InterPro:IPR013094" FT /db_xref="InterPro:IPR023508" FT /db_xref="UniProtKB/TrEMBL:D2TLV3" FT /protein_id="CBG87313.1" FT /translation="MKPENKLPVPSLISEEMQAVLNVHQDDLPPWPPADDFKAMRQHYQ FT LERRFWNAGAPQMETREYTIPVAQGQLTTRLYCPASQSQATLFYLHGGGFILGNLDTHD FT RIMRLLANYTQCTVVGIDYSLSPEARFPQAIEESVTACQYFHQHAEDYQLNMSKIGFAG FT DSAGAMLALASALWLRDKQLNCGKVAGVLLWYGLYGLQDSPSRRLLGGEWDGMRREDLL FT MFENAYLRNAQDRESPYYCLFNNDLTRDVPPCFIATAEFDPLIDDSRLLWQTLQAHRQP FT CEYRMYPGTLHSFLHYSHMMRCADEALQDGARFFTAQL" FT misc_feature complement(594557..595186) FT /gene="aes" FT /locus_tag="ROD_05341" FT /note="HMMPfam hit to PF07859, Alpha/beta hydrolase fold-3, FT score 7.9e-71" FT /inference="protein motif:PFAM:PF07859" FT misc_feature complement(594932..594970) FT /note="PS01174 Lipolytic enzymes G-D-X-G family, putative FT serine active site." FT /inference="protein motif:Prosite:PS01174" FT misc_feature complement(595136..595186) FT /note="PS01173 Lipolytic enzymes G-D-X-G family, putative FT histidine active site." FT /inference="protein motif:Prosite:PS01173" FT CDS 595585..596889 FT /transl_table=11 FT /gene="gsk" FT /locus_tag="ROD_05351" FT /product="inosine-guanosine kinase" FT /EC_number="2.7.1.73" FT /db_xref="GOA:D2TLV4" FT /db_xref="InterPro:IPR002173" FT /db_xref="InterPro:IPR007342" FT /db_xref="InterPro:IPR011611" FT /db_xref="UniProtKB/TrEMBL:D2TLV4" FT /protein_id="CBG87314.1" FT /translation="MKFPGKRKSKHYFPVNARDPLLQQIQPEHESSAAWVVGIDQTLVD FT IEAKVDDEFIQRYGLSAGHSLVIEDDVAEALYQELMRKNLITHQFAGGTIGNTMHNYSV FT LADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESGERT FT FAISPGHMNQLRAESIPEAVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKKHNVP FT VVLTLGTKFVIADNPQWWQAFLKENVSILAMNEEEAEALTGENDPLLASDKALDWVDLV FT LCTAGPVGLYMAGFTEDEAKRKTQHPLLPGAIAEFNQYEFSRAIRHKDCVNPLRVYSHI FT APYMGGPEKIMNTNGAGDGALAALLHDITANSYHRTNVPNSSKHKFTWLTYSSLAQVCK FT YANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR" FT misc_feature 595813..596382 FT /gene="gsk" FT /locus_tag="ROD_05351" FT /note="HMMPfam hit to PF00294, Carbohydrate/purine kinase, FT score 7.9e-23" FT /inference="protein motif:PFAM:PF00294" FT misc_feature 596638..596679 FT /note="PS00584 pfkB family of carbohydrate kinases FT signature 2." FT /inference="protein motif:Prosite:PS00584" FT CDS complement(596950..598626) FT /transl_table=11 FT /locus_tag="ROD_05361" FT /product="putative transport protein" FT /db_xref="GOA:D2TLV5" FT /db_xref="InterPro:IPR001991" FT /db_xref="InterPro:IPR003148" FT /db_xref="InterPro:IPR004771" FT /db_xref="InterPro:IPR006153" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TLV5" FT /protein_id="CBG87315.1" FT /translation="MHHATPLITTIVGGLVLAFILGMIANKLRISPLVGYLLAGVLAGP FT FTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLLGV FT ALSAVIGWSLMTGIVFGLCLSTASTVVLLRALEERQLVDSQRGQIAIGWLIVEDLVMVL FT TLVLLPAVAGMVEKGNVGLASLSVDLGITIGKVIAFIAIMMLVGRRLVPWIMARSAATG FT SRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAF FT AVLFFVSVGMLFDPMILVQQPLAVLATLAIIIFGKSVAAFFLVRLFGHSQRTALTIAAS FT LAQIGEFAFILAGLGMALNLLPQEGQNLVLAGAILSIMLNPVLFALLERYLAKTETLEE FT QTLEEALEEEKQIPVDICNHALLVGFGRVGSLLGEKLMASGIPLVVIETSRTRVDELRE FT RGIRAVLGNAANEEIMNLAHLECARWLILTIPNGYEAGEIVASAREKCPGIEIIARAHY FT DDEVEYITERGANQVVMGEREIARTMLELLETPPAGDVVPG" FT misc_feature complement(597022..597369) FT /locus_tag="ROD_05361" FT /note="HMMPfam hit to PF02254, TrkA-N, score 2e-33" FT /inference="protein motif:PFAM:PF02254" FT misc_feature complement(join(597466..597525,597553..597621, FT 597655..597723,597883..597951,597988..598056, FT 598114..598182,598219..598287,598300..598368, FT 598393..598461,598471..598530,598549..598617)) FT /locus_tag="ROD_05361" FT /note="11 probable transmembrane helices predicted for FT ROD05361 by TMHMM2.0 at aa 4-26, 33-52, 56-78, 87-109, FT 114-136, 149-171, 191-213, 226-248, 302-324, 336-358 and FT 368-387" FT misc_feature complement(597472..598596) FT /locus_tag="ROD_05361" FT /note="HMMPfam hit to PF00999, Sodium/hydrogen exchanger, FT score 2e-88" FT /inference="protein motif:PFAM:PF00999" FT misc_feature complement(597676..597699) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(598842..600062) FT /transl_table=11 FT /gene="fsr" FT /locus_tag="ROD_05371" FT /product="fosmidomycin resistance protein" FT /db_xref="GOA:D2TLV6" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TLV6" FT /protein_id="CBG87316.1" FT /translation="MATNQTAQPIPGSAAPSQKARTSFGILGAISLSHLLNDMIQSLIL FT AIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLSGL FT VLLAMAGSFGAVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFGSSL FT GPLLAAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYAAQHRMSKGKPKAAVISPLPR FT NKVVLAVSILLLLIFSKYFYMASISSYYTFYLMQKFGLSVQNAQLHLFAFLFAVAAGTV FT IGGPVGDKIGRKYVIWGSILGVAPFTLILPYATLYWTGILTVIIGFILASAFSAILVYA FT QELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLLADHTSIDLVYKICAFLPLLGILTIFL FT PDNRHKA" FT misc_feature complement(join(598866..598934,598944..599012, FT 599046..599114,599124..599183,599202..599270, FT 599328..599396,599457..599525,599694..599762, FT 599823..599891,599919..599987)) FT /gene="fsr" FT /locus_tag="ROD_05371" FT /note="10 probable transmembrane helices predicted for FT ROD05371 by TMHMM2.0 at aa 26-48, 58-80, 101-123, 180-202, FT 223-245, 265-287, 294-313, 317-339, 351-373 and 377-399" FT misc_feature complement(598938..599975) FT /gene="fsr" FT /locus_tag="ROD_05371" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 1.1e-39" FT /inference="protein motif:PFAM:PF07690" FT CDS 600224..601867 FT /transl_table=11 FT /gene="ushA" FT /locus_tag="ROD_05381" FT /product="protein UshA precursor" FT /EC_number="3.6.1.45" FT /EC_number="3.1.3.5" FT /db_xref="GOA:D2TLV7" FT /db_xref="InterPro:IPR004843" FT /db_xref="InterPro:IPR006146" FT /db_xref="InterPro:IPR006179" FT /db_xref="InterPro:IPR008334" FT /db_xref="UniProtKB/TrEMBL:D2TLV7" FT /protein_id="CBG87317.1" FT /translation="MRCLKRGVALALFAALAGQPAQAYEKDKTYKITVLHTNDHHGHFW FT RNEYGEYGLSAQKTLVDGIRSEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNL FT IGYDAMAVGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWAIFKRQDLKI FT AVIGLTTDDTAKIGNPEFFTDIEFRKPADEAKLVIQELQMNEKPDVIIATTHMGHYDNG FT SHGSNAPGDVEMARSLPAGSLAMIVGGHSQDPVCMAAENKKQVDYIPGTPCAPDKQNGI FT WIVQAHEWGKYVGRADFEFRNGEMKLVNYQLIPVNLKKKVTWDDGKSERVLYTPEIAEN FT PQMLSLLTPFQNKGKAQLDVKIGTVNARLEGDRSKVRFVQTNMGHLILAAQMARTGADF FT AVMSGGGIRDSIEAGDITYKSVLKVQPFGNIVVYADMNGKEVTDYLTAVAQMKPDSGAY FT PQFANVSFVAKDGKLSDLKIKGEPIDPAKTYRMATLSFNATGGDGYPRLDNKPGYVNTG FT FIDAEVLKEYIQKNSPLDAGAYEPQNEVSF" FT sig_peptide 600224..600292 FT /gene="ushA" FT /locus_tag="ROD_05381" FT /note="Signal peptide predicted for ROD05381 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.994 between residues 23 and 24" FT misc_feature 600317..600985 FT /gene="ushA" FT /locus_tag="ROD_05381" FT /note="HMMPfam hit to PF00149, Metallophosphoesterase, FT score 7.6e-18" FT /inference="protein motif:PFAM:PF00149" FT misc_feature 600317..600355 FT /note="PS00785 5'-nucleotidase signature 1." FT /inference="protein motif:Prosite:PS00785" FT misc_feature 600542..600577 FT /note="PS00786 5'-nucleotidase signature 2." FT /inference="protein motif:Prosite:PS00786" FT misc_feature 601304..601750 FT /gene="ushA" FT /locus_tag="ROD_05381" FT /note="HMMPfam hit to PF02872, 5'-Nucleotidase, C-terminal, FT score 1.4e-56" FT /inference="protein motif:PFAM:PF02872" FT CDS complement(602101..602580) FT /transl_table=11 FT /locus_tag="ROD_05391" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TLV8" FT /db_xref="InterPro:IPR004369" FT /db_xref="InterPro:IPR007214" FT /db_xref="UniProtKB/TrEMBL:D2TLV8" FT /protein_id="CBG87318.1" FT /translation="MTPAVKLLEKNNISFQIHTYDHDPAETNFGDEVVRKLGLNADQVY FT KTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVDMADPMVAQRTTGYLVGGIS FT PLGQKKRLPTLIDAPAQAFGTIYVSGGKRGLDIELAASDLAAILDAKFADIARRD" FT misc_feature complement(602116..602553) FT /locus_tag="ROD_05391" FT /note="HMMPfam hit to PF04073, YbaK/prolyl-tRNA synthetase FT associated region, score 1.3e-77" FT /inference="protein motif:PFAM:PF04073" FT misc_RNA 602703..602783 FT /note="Rfam:RF00368;sroB;Score=71.48;positions 1 to 59" FT CDS complement(602782..603576) FT /transl_table=11 FT /locus_tag="ROD_05401" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR002816" FT /db_xref="UniProtKB/TrEMBL:D2TLV9" FT /protein_id="CBG87319.1" FT /translation="MDPLFRVKTFFAALRGHHYSWPAIDVTLPGNRRFHLIGSIHMGCR FT EMSPLPARLLRKLKNADALIVEADVSGSDSPFTDLPTFAALEERISETQLRNLHKATDE FT LGISPSLFSTQPLWQIAMVLQATQAQQLGLRPEYGIDYQLLQAAKETRIPIIELEGAAS FT QIALLSDLPDNGLALLDDTLTHWHTNARLLQQMMSWWLKTPPQNNQLTLPNTFSESLYD FT VLMHQRNLAWRDRLAALPPGQYVVAVGALHLYGEGNLPEMMR" FT misc_feature complement(602785..603489) FT /locus_tag="ROD_05401" FT /note="HMMPfam hit to PF07446, GumN, score 4.8e-07" FT /inference="protein motif:PFAM:PF07446" FT CDS complement(603722..606223) FT /transl_table=11 FT /gene="copA" FT /locus_tag="ROD_05411" FT /product="copper-transporting P-type ATPase" FT /EC_number="3.6.3.4" FT /db_xref="GOA:D2TLW0" FT /db_xref="InterPro:IPR000150" FT /db_xref="InterPro:IPR000695" FT /db_xref="InterPro:IPR001757" FT /db_xref="InterPro:IPR005834" FT /db_xref="InterPro:IPR006121" FT /db_xref="InterPro:IPR006403" FT /db_xref="InterPro:IPR006416" FT /db_xref="InterPro:IPR008250" FT /db_xref="InterPro:IPR017969" FT /db_xref="InterPro:IPR018303" FT /db_xref="InterPro:IPR023214" FT /db_xref="InterPro:IPR023299" FT /db_xref="InterPro:IPR023300" FT /db_xref="UniProtKB/TrEMBL:D2TLW0" FT /protein_id="CBG87320.1" FT /translation="MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQAEVSITQAHVTG FT TASADALIETIKQAGYGAELSHPKAKPLAESSIPSEALAAVPDELPAAAAEEDSQQLLL FT SGMSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASATDLVQAVENAGYGAEAI FT EDDVKRRERQQETAIATMKRFRWQAIVALLLGVPVMVWGMIGDNMMVTADNRSLWLAIG FT LATLAVMVFAGGHFYRSAWKSLMNGTATMDTLVALGTGVAWLYSMSVNLWPQWFPMEAR FT HLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTDSGDKSVPLAEV FT QPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPLPQQKGAGDSVHAGTVVQDGSVL FT FRASAVGSHTTLSRIIRMVRQAQSSKPQIGQLADKISAVFVPVVVVIALVSAGIWYFFG FT PAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLD FT TVVFDKTGTLTEGKPQVVAIKTFAGVDEAQALRLAAALEQGSSHPLARAILDKAGDITL FT PQVNGFRTLRGLGVSGEAEGHTLLLGNQALLNEQQVATTEMEAEIAAQASQGATPVLLA FT IDGTAAALLAVRDPLRSDSVAALQRLHRAGYRLVMLTGDNPTTANAIAKEAGIDEVIAG FT VLPDGKADAIQRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAITLMR FT HSLLGVADALSLSRATLRNMKQNLLGAFIYNSIGIPVAAGILWPFTGTLLNPVVAGAAM FT ALSSITVVSNANRLLRFKPKE" FT misc_feature complement(join(603755..603823,603836..603895, FT 604772..604840,604853..604921,605330..605383, FT 605426..605494,605513..605581,605609..605662)) FT /gene="copA" FT /locus_tag="ROD_05411" FT /note="8 probable transmembrane helices predicted for FT ROD05411 by TMHMM2.0 at aa 188-205, 215-237, 244-266, FT 281-298, 435-457, 462-484, 777-796 and 801-823" FT misc_feature complement(603899..603964) FT /note="Predicted helix-turn-helix motif with score FT 1335.000, SD 3.73 at aa 754-775, sequence FT HSLLGVADALSLSRATLRNMKQ" FT misc_feature complement(604004..604678) FT /gene="copA" FT /locus_tag="ROD_05411" FT /note="HMMPfam hit to PF00702, Haloacid dehalogenase-like FT hydrolase, score 7.7e-41" FT /inference="protein motif:PFAM:PF00702" FT misc_feature complement(604007..604075) FT /note="PS01229 Hypothetical cof family signature 2." FT /inference="protein motif:Prosite:PS01229" FT misc_feature complement(604640..604660) FT /note="PS00154 E1-E2 ATPases phosphorylation site." FT /inference="protein motif:Prosite:PS00154" FT misc_feature complement(604688..605356) FT /gene="copA" FT /locus_tag="ROD_05411" FT /note="HMMPfam hit to PF00122, E1-E2 ATPase-associated FT region, score 1e-97" FT /inference="protein motif:PFAM:PF00122" FT misc_feature complement(604790..604822) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(605738..605923) FT /gene="copA" FT /locus_tag="ROD_05411" FT /note="HMMPfam hit to PF00403, Heavy metal FT transport/detoxification protein, score 1.5e-15" FT /inference="protein motif:PFAM:PF00403" FT misc_feature complement(605825..605914) FT /note="PS01047 Heavy-metal-associated domain." FT /inference="protein motif:Prosite:PS01047" FT misc_feature complement(605897..605929) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(606029..606208) FT /gene="copA" FT /locus_tag="ROD_05411" FT /note="HMMPfam hit to PF00403, Heavy metal FT transport/detoxification protein, score 9.1e-12" FT /inference="protein motif:PFAM:PF00403" FT CDS 606332..606745 FT /transl_table=11 FT /gene="cueR" FT /locus_tag="ROD_05421" FT /product="copper efflux regulator" FT /db_xref="GOA:D2TLW1" FT /db_xref="InterPro:IPR000551" FT /db_xref="InterPro:IPR009061" FT /db_xref="InterPro:IPR011789" FT /db_xref="InterPro:IPR015358" FT /db_xref="UniProtKB/TrEMBL:D2TLW1" FT /protein_id="CBG87321.1" FT /translation="MNISDVAKKTGLTSKAIRFYEEKGLVTPPLRSENGYRTYSQQHLN FT ELTLLRQARQVGFNLEECGELVNLFNDPARHSADVKKRTLEKVAEIERHIGELQAMREQ FT LLALAESCPGDDSADCPIIDNLSGCCHHRAKVS" FT misc_feature 606332..606397 FT /note="Predicted helix-turn-helix motif with score FT 1486.000, SD 4.25 at aa 1-22, sequence FT MNISDVAKKTGLTSKAIRFYEE" FT misc_feature 606335..606448 FT /gene="cueR" FT /locus_tag="ROD_05421" FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT protein, MerR, score 4.3e-13" FT /inference="protein motif:PFAM:PF00376" FT misc_feature 606341..606409 FT /note="PS00552 Bacterial regulatory proteins, merR family FT signature." FT /inference="protein motif:Prosite:PS00552" FT misc_feature 606461..606655 FT /gene="cueR" FT /locus_tag="ROD_05421" FT /note="HMMPfam hit to PF09278, Transcription regulator FT MerR, DNA binding, score 2.8e-19" FT /inference="protein motif:PFAM:PF09278" FT CDS complement(606746..607207) FT /transl_table=11 FT /locus_tag="ROD_05431" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR002810" FT /db_xref="InterPro:IPR012340" FT /db_xref="UniProtKB/TrEMBL:D2TLW2" FT /protein_id="CBG87322.1" FT /translation="MLEMIALHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGIA FT VWLLPVGWEWQGVIFAVLTLLAAWLWWKWLAKRVRQQNPADGQLNLRGQQLVGRRFVLE FT SALVHGRGHMRVGDSSWPVCAQQDLPAGTQVEVVAVEGITLHIRAIVPV" FT misc_feature complement(606755..607174) FT /locus_tag="ROD_05431" FT /note="HMMPfam hit to PF01957, Nodulation efficiency, NfeD, FT score 6.1e-35" FT /inference="protein motif:PFAM:PF01957" FT misc_feature complement(join(606992..607051,607061..607120, FT 607139..607198)) FT /locus_tag="ROD_05431" FT /note="3 probable transmembrane helices predicted for FT ROD05431 by TMHMM2.0 at aa 4-23, 30-49 and 53-72" FT CDS complement(607207..608121) FT /transl_table=11 FT /locus_tag="ROD_05441" FT /product="putative membrane protein" FT /db_xref="GOA:D2TLW3" FT /db_xref="InterPro:IPR001107" FT /db_xref="InterPro:IPR001972" FT /db_xref="InterPro:IPR018080" FT /db_xref="UniProtKB/TrEMBL:D2TLW3" FT /protein_id="CBG87323.1" FT /translation="MLIFIPVLIFVALVIVGAGVKIVPQGYQWTVERFGRYTQTLQPGL FT SLVVPFMDRIGRKINMMEQVLDIPSQEIISKDNANVTIDAVCFIQVIDAPRAAYEVSNL FT ELAIINLTMTNIRTVLGSMELDEMLSQRDSINTRLLHIVDEATNPWGIKVTRIEIRDVR FT PPAELVSSMNAQMKAERTKRAYILEAEGVRQAEILKAEGEKQSQILKAEGERQSAFLQA FT EARERSAEAEARATKMVSEAIAAGDIQAINYFVAQKYTEALQQIGSSDNSKVVMMPLEA FT SSLMGSIAGVAELIKDSASERKK" FT misc_feature complement(607543..608067) FT /locus_tag="ROD_05441" FT /note="HMMPfam hit to PF01145, Band 7 protein, score FT 1.8e-79" FT /inference="protein motif:PFAM:PF01145" FT misc_feature complement(607642..607728) FT /note="PS01270 Band 7 protein family signature." FT /inference="protein motif:Prosite:PS01270" FT misc_feature complement(608035..608103) FT /locus_tag="ROD_05441" FT /note="1 probable transmembrane helix predicted for FT ROD05441 by TMHMM2.0 at aa 7-29" FT CDS 608265..608942 FT /transl_table=11 FT /locus_tag="ROD_05451" FT /product="putative ABC transporter, ATP-binding protein" FT /db_xref="GOA:D2TLW4" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TLW4" FT /protein_id="CBG87324.1" FT /translation="MKESDILLMLKHVGFQAGATKILNDICFTLRAGEFKLITGPSGCG FT KSTLLRIIASLLSPEEGEIIFAGDDISTLNPETYRQQVSYCAQTPALFGETVYDNLIFP FT WEIRRKHPERQHLVDDLARFELPETLLEKNINALSGGEKQRVSLIRNLQFLPRVLLLDE FT ITSALDEHNKRNVNEIIHRYVRDKQIGVLWVTHDKDEINHADNIITLSPHGGKMQEARN FT ERA" FT misc_feature 608361..608906 FT /locus_tag="ROD_05451" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 3.9e-42" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 608382..608405 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 608676..608720 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT CDS 608929..609708 FT /transl_table=11 FT /locus_tag="ROD_05461" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR005226" FT /db_xref="UniProtKB/TrEMBL:D2TLW5" FT /protein_id="CBG87325.1" FT /translation="MNEHNITNESLALAVMLVVVAIIISRKEKLALEKDILWSVGRAVV FT QLIIVGYVLKYIFGVNHSLLTLLMVLFICFNAAYNAQKRSKYIDKAFLSSLIAITTGTG FT LTLAVLVLSGSIAFTPMQVIPISGMIAGNAMVAVGLCYNNLGQRFSSEQQQIQEKLSLG FT ATPKMASAGLIRDSIRASLIPTIDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQILVT FT FMLLSTASLSTITACYLTYRKFYNSRHQLVVAHLKKS" FT misc_feature 608932..609669 FT /locus_tag="ROD_05461" FT /note="HMMPfam hit to PF03649, Conserved hypothetical FT protein CHP00245, score 4e-158" FT /inference="protein motif:PFAM:PF03649" FT misc_feature join(608941..609000,609034..609087,609097..609165, FT 609202..609270,609298..609366,609502..609555, FT 609583..609651) FT /locus_tag="ROD_05461" FT /note="7 probable transmembrane helices predicted for FT ROD05461 by TMHMM2.0 at aa 5-24, 36-53, 57-79, 92-114, FT 124-146, 192-209 and 219-241" FT misc_feature 609607..609639 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(609783..610637) FT /transl_table=11 FT /locus_tag="ROD_05471" FT /product="thioredoxin-like protein" FT /db_xref="GOA:D2TLW6" FT /db_xref="InterPro:IPR005746" FT /db_xref="InterPro:IPR011990" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR013766" FT /db_xref="UniProtKB/TrEMBL:D2TLW6" FT /protein_id="CBG87326.1" FT /translation="MSVQNIVNINESNLQQTLEQSMTTPVLFYFWSERSQHCLQLTPVL FT ESLATQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRA FT LLDKVLPREEELKAQQAMQLMQEGNYIEALPLLKEAWQLSNQNSEIGLLLAETQIALNR FT SEDAEAVLKTVPLQDQDTRYQGLVAQIDLLKQAADTPEIQQLQQQVADNPQDAGLAAQL FT ALQLHQVGRNEEALELLFSHLRKDLAAGDGQVRKMFQEILAALGTGDALASKYRRQLYA FT LLY" FT misc_feature complement(610311..610529) FT /locus_tag="ROD_05471" FT /note="HMMPfam hit to PF00085, Thioredoxin domain, score FT 9.6e-22" FT /inference="protein motif:PFAM:PF00085" FT CDS complement(610696..611466) FT /transl_table=11 FT /locus_tag="ROD_05481" FT /product="putative short chain dehydrogenase" FT /db_xref="GOA:D2TLW7" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR002347" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR020904" FT /db_xref="UniProtKB/TrEMBL:D2TLW7" FT /protein_id="CBG87327.1" FT /translation="MQKSVLITGCSSGIGLESALELKRQGFQILAGCRKPEDVARMKSM FT GFTGVLLDLDSPESVDRAADEVIALTDNCLFGIFNNAGYGVYGPLSTISREQMEQQFST FT NFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWTDALRME FT LRHSGIKVSLIEPGPIRTRFTENVNQTQSDKPVENPGIAARFTLDPEAVVDKVRHAFVS FT EKPRLRYPVTLVTWAVMLLKRLLPGRLMDKILHG" FT misc_feature complement(610972..611460) FT /locus_tag="ROD_05481" FT /note="HMMPfam hit to PF00106, Short-chain FT dehydrogenase/reductase SDR, score 4.6e-23" FT /inference="protein motif:PFAM:PF00106" FT misc_feature complement(610984..611070) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT /inference="protein motif:Prosite:PS00061" FT CDS complement(611495..612121) FT /transl_table=11 FT /gene="tesA" FT /locus_tag="ROD_05491" FT /product="acyl-coA thioesterase I" FT /db_xref="GOA:D2TLW8" FT /db_xref="InterPro:IPR001087" FT /db_xref="InterPro:IPR008265" FT /db_xref="InterPro:IPR013830" FT /db_xref="InterPro:IPR013831" FT /db_xref="UniProtKB/TrEMBL:D2TLW8" FT /protein_id="CBG87328.1" FT /translation="MVNFNNVFRWHLPFLFLILFTCRSVAADTLLILGDSLSAGYRMSA FT SAAWPALLNDKWHSKTTIVNASISGDTSGQALARLPALLKQHQPRWVLVELGGNDGLRG FT FSPAQTEQTLRTILQNVKAASAEPLLMQIRLPANYGRRYNETFSAIYPKLASEFDIPLL FT PFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLSPLVKYES" FT misc_feature complement(611534..612034) FT /gene="tesA" FT /locus_tag="ROD_05491" FT /note="HMMPfam hit to PF00657, Lipolytic enzyme, G-D-S-L, FT score 5.9e-34" FT /inference="protein motif:PFAM:PF00657" FT misc_feature complement(612002..612034) FT /note="PS01098 Lipolytic enzymes G-D-S-L family, serine FT active site." FT /inference="protein motif:Prosite:PS01098" FT misc_feature complement(612020..612088) FT /gene="tesA" FT /locus_tag="ROD_05491" FT /note="1 probable transmembrane helix predicted for FT ROD05491 by TMHMM2.0 at aa 12-34" FT sig_peptide complement(612041..612121) FT /gene="tesA" FT /locus_tag="ROD_05491" FT /note="Signal peptide predicted for ROD05491 by SignalP 2.0 FT HMM (Signal peptide probability 0.997) with cleavage site FT probability 0.724 between residues 27 and 28" FT CDS 612089..612775 FT /transl_table=11 FT /locus_tag="ROD_05501" FT /product="ABC transporter, ATP-binding protein" FT /db_xref="GOA:D2TLW9" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TLW9" FT /protein_id="CBG87329.1" FT /translation="MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRAETIALIGES FT GSGKSTLLAILAGLDDGSSGEVSLVGKPLHRMDEEARAQLRAQHVGFVFQSFMLIPTLN FT ALENVELPALLRGEHSGQSREGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG FT RPEVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDPQLAARCDRRLRLVNG FT LLQEEV" FT misc_feature 612194..612754 FT /locus_tag="ROD_05501" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 7.8e-60" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 612215..612238 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 612527..612571 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT CDS 612772..615186 FT /transl_table=11 FT /locus_tag="ROD_05511" FT /product="putative permease" FT /db_xref="GOA:D2TLX0" FT /db_xref="InterPro:IPR003838" FT /db_xref="UniProtKB/TrEMBL:D2TLX0" FT /protein_id="CBG87330.1" FT /translation="MIARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQ FT QSRDFMAGDRALRSSRVVPQAWIDEARQRGLKVGEQLSFATMTFAGDTPQLANVKAVDE FT VYPMYGELETRPPGLKPQPGSVLLAPRLMALLNLKPGDTIDVGDATLRIAGEVVQEPDS FT GFNPFQMAPRLMMNIADVEKTGAVQPGSRVTWRYKFGGTPQQLDGYEKWLLPQLKPEHR FT WYGLEQDEGALGKSLERSQQFLLLSALLTLLLAVAAVAVAMSHYCRSRYDLVAILKTLG FT AGRAQLRRLIVGQWLMVLALSGVTGGAMGLLFEKVLMVLLKPVLPSALPPASLWPWLWA FT LGTMLVISLLVGLRPYRLLLATQPLRVLRRDVVANVWPLKFYLPVVSVVVVLLLAGLMG FT GSPLLWAVLAGAVVLALLCGVLGWMLLNVLRGLTLSSLPLRLAVSRLLRQPWSTLSQLS FT AFSLSFMLLALLLVLRGDLLDRWQQQLPPESPNYFLINIATEQVPQVKAFLSEHQVIPE FT AFYPIVRARLTAINSQPTEGNSDEALNRELNLTWQDTRPDHNPIVAGSWPPAKGEVSME FT EGLAKRLNVSLGDTVTFIGDTQAFSAKVSSLRKVDWESLRPNFFFIFPSGALDGQPQSW FT LTSFRWENGNAMLTQLNREFPTISLLDIGAILKQVGQVLEQVSRALEVMVVLVTACGLL FT LLLAQVQVGMRQRHQELVVWRTLGAGRRLLRTTLWCEFAMLGLVSGLVAAIGAETALAV FT LQTRVFDFPWQPDWRLWAVLPVCGALLLSACGGWLGVRLLKGKALFRQFNS" FT sig_peptide 612772..612870 FT /locus_tag="ROD_05511" FT /note="Signal peptide predicted for ROD05511 by SignalP 2.0 FT HMM (Signal peptide probability 0.995) with cleavage site FT probability 0.585 between residues 33 and 34" FT misc_feature join(612808..612876,613498..613557,613642..613710, FT 613768..613836,613897..613965,613978..614046, FT 614122..614190,614797..614865,614965..615033, FT 615076..615144) FT /locus_tag="ROD_05511" FT /note="10 probable transmembrane helices predicted for FT ROD05511 by TMHMM2.0 at aa 13-35, 243-262, 291-313, FT 333-355, 376-398, 403-425, 451-473, 676-698, 732-754 and FT 769-791" FT misc_feature 612823..612855 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 613282..613863 FT /locus_tag="ROD_05511" FT /note="HMMPfam hit to PF02687, Protein of unknown function FT DUF214, permase predicted, score 6.3e-14" FT /inference="protein motif:PFAM:PF02687" FT misc_feature 614509..615165 FT /locus_tag="ROD_05511" FT /note="HMMPfam hit to PF02687, Protein of unknown function FT DUF214, permase predicted, score 9.6e-08" FT /inference="protein motif:PFAM:PF02687" FT misc_feature 615091..615123 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 615366..616499 FT /transl_table=11 FT /locus_tag="ROD_05521" FT /product="outer membrane protein" FT /db_xref="InterPro:IPR023614" FT /db_xref="UniProtKB/TrEMBL:D2TLX1" FT /protein_id="CBG87331.1" FT /translation="MTIKTTALAASIGAIVALAPFASQAEITVLKQDPQAGNPLSRLNF FT TVGGSIRPQFQNMTGDDGANGYKRNGFDGGTRFRFAADYYLFDDISWISYYELGVNIPA FT QFNWDNHYAEGAHDTTRRMLYTGLKSNTWGTLTFGQQNSVYYDVVGAKTDIWDYDMIGQ FT APGNGINGDYDGSYRSRKMLKYKKTVGDVDLFASYLFSDDYNANNGLNYKRKGGGSLGA FT DYHITDDLSWGTAWNYTRAEMRGNGNKTYDQNIVGTALSWTPDNWTLSMGGGWYQNFMT FT TKKVSVNDYFAGDAWGLEYFAGYTFPINQYAVKSIQPYFMGDRIEYVNGRDYLRTDNGV FT GISFQLDYGFRVDYEHVFTSSTDNLGDMNLVRLRYDF" FT sig_peptide 615366..615440 FT /locus_tag="ROD_05521" FT /note="Signal peptide predicted for ROD05521 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.926 between residues 25 and 26" FT CDS complement(617314..618384) FT /transl_table=11 FT /gene="selU" FT /locus_tag="ROD_05531" FT /product="tRNA 2-selenouridine synthase" FT /EC_number="2.9.1.-" FT /db_xref="GOA:D2TLX2" FT /db_xref="InterPro:IPR001763" FT /db_xref="InterPro:IPR017582" FT /db_xref="UniProtKB/TrEMBL:D2TLX2" FT /protein_id="CBG87332.1" FT /translation="MNDGTDYRALLSADTPLIDVRALVEFQQGAMPGAINLPLMNDEER FT AAVGTCYKRQGPEAALALGHQLVCGDIRQQRLEAWIAACRRHPHGYLCCARGGQRSHIT FT QQWLREAGIDYPLIKGGYKALRQAAIAATEELVQKPIVLIGGCTGNGKTQLVQQRSDGV FT DLEGLARHRGSSFGRTLEAQLSQASFENLLAVTLLKKQTSRWVLEDEGRMIGSNHLPEC FT LRARMAQATIAVVDDPFARRLERLREEYFVRMHHDFTHAYGEVQGWQEYSEYLHHGLFA FT IRRRLGLQRFAELSAKLEAALAEQRRTGSTDAHFSWLSPLLEEYYDPMYRYQLEKKADK FT IAFRGTFEEVADWLRG" FT misc_feature complement(617926..617949) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(618481..619548) FT /transl_table=11 FT /gene="purK" FT /locus_tag="ROD_05541" FT /product="phosphoribosylaminoimidazole carboxylase ATPase FT subunit" FT /db_xref="GOA:D2TLX3" FT /db_xref="InterPro:IPR003135" FT /db_xref="InterPro:IPR005875" FT /db_xref="InterPro:IPR011054" FT /db_xref="InterPro:IPR011761" FT /db_xref="InterPro:IPR013816" FT /db_xref="InterPro:IPR013817" FT /db_xref="InterPro:IPR016185" FT /db_xref="UniProtKB/TrEMBL:D2TLX3" FT /protein_id="CBG87333.1" FT /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFRQSV FT ITAEIERWPETALTRELAQHPAFVNRDVFPIIADRLTQKQLFDKLSLATAPWQLLADSS FT EWPAIFARLGELAIVKRRVGGYDGRGQWRLRAADTDPLPADCYGECIIEQGINFSAEVS FT LVGARAFDGSTVFYPLTHNLHQEGILRTSVAFPQANAKQQAQAESMLSAIMHELNYVGV FT MAMECFVTPEGLLINELAPRVHNSGHWTQNGASISQFELHLRAITGLPLPPPVVNSPSV FT MVNLIGSDLNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTARLSATLEALAPLLP FT PEYASGIAWAQSQLQ" FT misc_feature complement(618787..619314) FT /gene="purK" FT /locus_tag="ROD_05541" FT /note="HMMPfam hit to PF02222, ATP-grasp fold, FT ATP-dependent carboxylate-amine ligase-type, score 7.7e-93" FT /inference="protein motif:PFAM:PF02222" FT CDS complement(619545..620084) FT /transl_table=11 FT /gene="purE" FT /locus_tag="ROD_05551" FT /product="phosphoribosylaminoimidazole carboxylase FT catalytic subunit" FT /db_xref="GOA:D2TLX4" FT /db_xref="InterPro:IPR000031" FT /db_xref="InterPro:IPR024694" FT /db_xref="UniProtKB/TrEMBL:D2TLX4" FT /protein_id="CBG87334.1" FT /translation="MSRTTGVFRRMSSRNNPARVAIVMGSKSDWATMQFAAEIFDILNV FT PHHTEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQ FT SAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLSAWRK FT AQTDEVLENPDPRGGA" FT misc_feature complement(619557..620033) FT /gene="purE" FT /locus_tag="ROD_05551" FT /note="HMMPfam hit to PF00731, FT 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) FT carboxylase, score 5.8e-107" FT /inference="protein motif:PFAM:PF00731" FT CDS complement(620251..620973) FT /transl_table=11 FT /gene="lpxH" FT /locus_tag="ROD_05561" FT /product="UDP-2,3-diacylglucosamine hydrolase" FT /EC_number="3.6.1.-" FT /db_xref="GOA:D2TLX5" FT /db_xref="InterPro:IPR010138" FT /db_xref="InterPro:IPR024654" FT /db_xref="UniProtKB/TrEMBL:D2TLX5" FT /protein_id="CBG87335.1" FT /translation="MATLFIADLHLCAEEPAIVAGFLRFLADDARQADALYILGDLFEA FT WIGDDDTPPLHRQIAAAISALVDAGVPCFFIHGNRDFLLGKRFARESGMTLLPEEKVLT FT LYGRQILIMHGDTLCTDDRGYQAFRAKVHQRWLQTLFLSLPLFLRKRVAAKMRAGSKAA FT NSSKSLAIMDVNQRAVVAVMEKHQVQWLIHGHTHRPAVHELTANGQPAFRVVLGAWHSE FT GSMVKVTPEAVELIPFPF" FT misc_feature complement(620377..620973) FT /gene="lpxH" FT /locus_tag="ROD_05561" FT /note="HMMPfam hit to PF00149, Metallophosphoesterase, FT score 3e-14" FT /inference="protein motif:PFAM:PF00149" FT CDS complement(620976..621470) FT /transl_table=11 FT /gene="ppiB" FT /locus_tag="ROD_05571" FT /product="peptidyl-prolyl cis-trans isomerase B" FT /db_xref="GOA:D2TLX6" FT /db_xref="InterPro:IPR002130" FT /db_xref="InterPro:IPR020892" FT /db_xref="UniProtKB/TrEMBL:D2TLX6" FT /protein_id="CBG87336.1" FT /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVI FT NGFMIQGGGFEPGMKQKATKEAIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVD FT NDFLNFSGESMQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIENVTVS FT E" FT misc_feature complement(620982..621470) FT /gene="ppiB" FT /locus_tag="ROD_05571" FT /note="HMMPfam hit to PF00160, Peptidyl-prolyl cis-trans FT isomerase, cyclophilin-type, score 6.3e-53" FT /inference="protein motif:PFAM:PF00160" FT misc_feature complement(621312..621365) FT /note="PS00170 Cyclophilin-type peptidyl-prolyl cis-trans FT isomerase signature." FT /inference="protein motif:Prosite:PS00170" FT CDS 621645..623030 FT /transl_table=11 FT /gene="cysS" FT /locus_tag="ROD_05581" FT /product="cysteinyl-tRNA synthetase" FT /db_xref="GOA:D2TLX7" FT /db_xref="InterPro:IPR009080" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR015273" FT /db_xref="InterPro:IPR015803" FT /db_xref="InterPro:IPR024909" FT /db_xref="UniProtKB/TrEMBL:D2TLX7" FT /protein_id="CBG87337.1" FT /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFV FT AFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALN FT ILRPDMEPRATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPSYGQLSRQDLDQL FT QAGARVDVVDVKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFD FT IHGGGSDLMFPHHENEIAQSTCAHDGEYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL FT KYYDAETVRYFLMSGHYRSQLNYSEENLKQARSALERLYTALRGTDKTVAPAGGEAFEA FT RFIDAMNDDFNTPEAYSVLFDMAREVNRLKNEDMAAANAMASHLRKISAVLGLLEQEPE FT AFLQSGAQADDGEVAQIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTW FT RRK" FT misc_feature 621684..622586 FT /gene="cysS" FT /locus_tag="ROD_05581" FT /note="HMMPfam hit to PF01406, Cysteinyl-tRNA synthetase, FT class Ia, N-terminal, score 8.9e-226" FT /inference="protein motif:PFAM:PF01406" FT misc_feature 622665..622850 FT /gene="cysS" FT /locus_tag="ROD_05581" FT /note="HMMPfam hit to PF09190, Cysteinyl-tRNA synthetase, FT class Ia, DALR, score 7.3e-35" FT /inference="protein motif:PFAM:PF09190" FT CDS complement(623076..623630) FT /transl_table=11 FT /locus_tag="ROD_05591" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR007404" FT /db_xref="UniProtKB/TrEMBL:D2TLX8" FT /protein_id="CBG87338.1" FT /translation="MPTIITHAAIPLCLGAGLGTKVIPPRLLLAGIALAMLPDADVLSF FT KLGIAYGNVFGHRGFTHSLLFAFAVPILCALIGRRWLKASLTHCWLFLTVSLLSHSLLD FT SITTGGKGVGWLWPWSDERFFAPWQVIKVAPFALCHAVWPSGDTLGTAVGVVAGADADD FT NPVVETAIKKPDSTRYVLSGL" FT misc_feature complement(623265..623534) FT /locus_tag="ROD_05591" FT /note="HMMPfam hit to PF04307, Protein of unknown function FT DUF457, transmembrane, score 3e-32" FT /inference="protein motif:PFAM:PF04307" FT misc_feature complement(join(623400..623468,623526..623594)) FT /locus_tag="ROD_05591" FT /note="2 probable transmembrane helices predicted for FT ROD05591 by TMHMM2.0 at aa 13-35 and 55-77" FT CDS complement(623753..623965) FT /transl_table=11 FT /locus_tag="ROD_05601" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TMJ8" FT /db_xref="InterPro:IPR002942" FT /db_xref="UniProtKB/TrEMBL:D2TMJ8" FT /protein_id="CBG87339.1" FT /translation="MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGTV FT ETRKRCKIVAGQTVSYAGQSVNVVA" FT CDS complement(623967..624833) FT /transl_table=11 FT /gene="folD" FT /locus_tag="ROD_05611" FT /product="bifunctional protein FolD" FT /EC_number="1.5.1.5" FT /EC_number="3.5.4.9" FT /db_xref="GOA:D2TMJ9" FT /db_xref="InterPro:IPR000672" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR020630" FT /db_xref="InterPro:IPR020631" FT /db_xref="InterPro:IPR020867" FT /db_xref="UniProtKB/TrEMBL:D2TMJ9" FT /protein_id="CBG87340.1" FT /translation="MAAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSNP FT ASQIYVASKRKACDEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAG FT IDNVKVLERIDPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDLYGLNAV FT VIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLVVAVGKPGFIPGEWIK FT EGAIVVDVGINRLENGKVVGDVVFEDAAARASYITPVPGGVGPMTVATLIENTLQACVE FT YHDPQDK" FT misc_feature complement(623985..624464) FT /gene="folD" FT /locus_tag="ROD_05611" FT /note="HMMPfam hit to PF02882, Tetrahydrofolate FT dehydrogenase/cyclohydrolase, score 7e-108" FT /inference="protein motif:PFAM:PF02882" FT misc_feature complement(624030..624056) FT /note="PS00767 Tetrahydrofolate FT dehydrogenase/cyclohydrolase signature 2." FT /inference="protein motif:Prosite:PS00767" FT misc_feature complement(624471..624824) FT /gene="folD" FT /locus_tag="ROD_05611" FT /note="HMMPfam hit to PF00763, Tetrahydrofolate FT dehydrogenase/cyclohydrolase, score 1.9e-72" FT /inference="protein motif:PFAM:PF00763" FT misc_feature complement(624531..624608) FT /note="PS00766 Tetrahydrofolate FT dehydrogenase/cyclohydrolase signature 1." FT /inference="protein motif:Prosite:PS00766" FT misc_feature complement(624804..624827) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT tRNA 625075..625148 FT /locus_tag="ROD_t06" FT /product="transfer RNA-Arg" FT /anticodon=(pos:625109..625111,aa:Arg) FT /note="tRNA Arg anticodon TCT, Cove score 77.05" FT CDS complement(625230..625961) FT /transl_table=11 FT /locus_tag="ROD_05631" FT /product="putative inner membrane DNA-binding protein" FT /db_xref="GOA:D2TMK0" FT /db_xref="InterPro:IPR007607" FT /db_xref="UniProtKB/TrEMBL:D2TMK0" FT /protein_id="CBG87341.1" FT /translation="MHYNLLWLIWGLWLYLIIHYGVGDQHFYLTIKSRWKVIAVIILSC FT GLIYAVYFISSSTGVRTMFKRKEQNNTFADSQADISIASSLNPSQVSYLGDDVELTVKA FT TPQNHPEPSVAVIPETCIIKGELNSTSDIHVNGRIDGIIRSEKTVHILKSGHVEGDVIA FT YAIAVDGVLNGNCIGGEVSINAQGMVNGQVKSDSLAIHKNGRFYGNSLPRSDEEAQKNE FT FISAMDAVKENTIDLASFYKE" FT misc_feature complement(625314..625646) FT /locus_tag="ROD_05631" FT /note="HMMPfam hit to PF04519, Protein of unknown function FT DUF583, score 6.7e-19" FT /inference="protein motif:PFAM:PF04519" FT misc_feature complement(625674..625739) FT /note="Predicted helix-turn-helix motif with score 989.000, FT SD 2.56 at aa 75-96, sequence DSQADISIASSLNPSQVSYLGD" FT misc_feature complement(join(625785..625853,625896..625949)) FT /locus_tag="ROD_05631" FT /note="2 probable transmembrane helices predicted for FT ROD05631 by TMHMM2.0 at aa 5-22 and 37-59" FT CDS 626652..626891 FT /transl_table=11 FT /locus_tag="ROD_05641" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TMK1" FT /protein_id="CBG87342.1" FT /translation="MSLVTVISLLLRCRILFCMTIYRLFYGLSMPPPSANLMKNNQLYS FT CQQISCHSEFKYPREEVEIGKSIIGYLLNNKHRW" FT CDS complement(626960..628135) FT /transl_table=11 FT /locus_tag="ROD_05651" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TMK2" FT /db_xref="InterPro:IPR001623" FT /db_xref="UniProtKB/TrEMBL:D2TMK2" FT /protein_id="CBG87343.1" FT /translation="MNKIIKRLEIIKSAIELEDQEIIQQQLGHLKQEADDPVIQAIVEA FT IEARRFSDAMRDLAAWLQNQHALTGWQDPAIAAGKLELKTLESQLRELIDTRNTRIQIL FT DEFNDQYHLRLGPLMSRILALRKQLAASARRKQEAERRRREKDYLACQQYISLAVDRLA FT QLKLEWMAINASSREAVEVRQRIQQQTELIADLLAEIRGLENNFCHHDDSAARQAQEEA FT THKYEEYQEQQQDALQRFARDRRLSADERSELKRLWRQASRLCHPDVVADEQKEKAHQM FT MVQLNLARQNADLAAIRSLLSQLQSGLEPMMASDTLNNLAHLQKKIGQLRRQIAALLDE FT IAQLEAENAWRLATSAADKEAWFAEQERALSEIRDTLEVQVKHAEQELLAG" FT CDS join(628429..629247,629251..629814) FT /pseudo FT /transl_table=11 FT /gene="pheP" FT /locus_tag="ROD_05661" FT /product="phenylalanine-specific permease (pseudogene)" FT /note="pseudogene, truncated by premature stop codon" FT misc_feature join(628519..629247,629251..629814) FT /gene="pheP" FT /locus_tag="ROD_05661" FT /note="HMMPfam hit to PF00324, Amino acid FT permease-associated region, score 1.7e-149" FT /inference="protein motif:PFAM:PF00324" FT CDS complement(629872..631119) FT /transl_table=11 FT /locus_tag="ROD_05671" FT /product="putative mechanosensitive ion channel protein" FT /db_xref="GOA:D2TMK3" FT /db_xref="InterPro:IPR006685" FT /db_xref="InterPro:IPR010920" FT /db_xref="UniProtKB/TrEMBL:D2TMK3" FT /protein_id="CBG87345.1" FT /translation="MQELITQVEELAGIEMNPTTSLVMIFGIIFLTAVIVHIILHWVVL FT RTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAALWLQKGSDAAEILTTCAQ FT LWIMMYALLSLFSLLDVILNLSQKLPAASQLPLKGIFQGIKLIGAIIVGILMISLLIGQ FT SPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDI FT GLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDATSIHFLDEDE FT KARLYKAHLLKPYLDSRHQEIDEWNQQLNVPESVLNHRRMTNIGTFRAYLNEYLRNHPR FT IRKDMTLMVRQLAPDDHGLPLEIYAFTNTVVWLEYESIQADIFDHIFAVVEEFGLRIHQ FT SPTGNDIRSLSSAFAK" FT misc_feature complement(629926..630696) FT /locus_tag="ROD_05671" FT /note="HMMPfam hit to PF00924, MscS Mechanosensitive ion FT channel, score 1.7e-61" FT /inference="protein motif:PFAM:PF00924" FT misc_feature complement(join(630538..630606,630634..630702, FT 630739..630807,630850..630918,630985..631053)) FT /locus_tag="ROD_05671" FT /note="5 probable transmembrane helices predicted for FT ROD05671 by TMHMM2.0 at aa 23-45, 68-90, 105-127, 140-162 FT and 172-194" FT CDS complement(631212..631865) FT /transl_table=11 FT /gene="nfnB" FT /locus_tag="ROD_05681" FT /product="oxygen-insensitive NAD(P)H nitroreductase" FT /EC_number="1.5.1.34" FT /db_xref="GOA:D2TMK4" FT /db_xref="InterPro:IPR000415" FT /db_xref="UniProtKB/TrEMBL:D2TMK4" FT /protein_id="CBG87346.1" FT /translation="MDIVSVALKRHSTKAFDPSKKLTAEEAEKIKTLLQYSPSSTNSQP FT WHFIIASTEEGKARVAKSAAGGYAFNERKMLDASHVVVFCAKTAMDDAWLQRVVDQEEA FT DGRFANAEAKAANHKGRTFFADMHRKDLKDDAHWMAKQVYLNVGNFLLGVAALGLDAVP FT IEGFDAAILDAEFGLKEKGYTSVVVVPVGHHSVEDFNATLPKSRLPLATTLTEV" FT misc_feature complement(631287..631847) FT /gene="nfnB" FT /locus_tag="ROD_05681" FT /note="HMMPfam hit to PF00881, Nitroreductase, score FT 8.6e-74" FT /inference="protein motif:PFAM:PF00881" FT CDS complement(631964..632332) FT /transl_table=11 FT /locus_tag="ROD_05691" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007351" FT /db_xref="UniProtKB/TrEMBL:D2TMK5" FT /protein_id="CBG87347.1" FT /translation="MDEKTLYAAASRLALAFPFTEHCWPFGPEYDVFKVGGKIFMIATT FT VNNRSVINLKSDPQKSLLNQQIYPSITPGYHMNKKHWISVAPGDDINASLLEELVNDSW FT NLVVDGLAKRDQKRIRPG" FT misc_feature complement(632009..632314) FT /locus_tag="ROD_05691" FT /note="HMMPfam hit to PF04237, Protein of unknown function FT DUF419, score 1.6e-43" FT /inference="protein motif:PFAM:PF04237" FT CDS complement(632332..632913) FT /transl_table=11 FT /locus_tag="ROD_05701" FT /product="putative tetR-family transcriptional regulator" FT /db_xref="GOA:D2TMK6" FT /db_xref="InterPro:IPR001647" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR015893" FT /db_xref="InterPro:IPR023772" FT /db_xref="InterPro:IPR023773" FT /db_xref="UniProtKB/TrEMBL:D2TMK6" FT /protein_id="CBG87348.1" FT /translation="MARPKSEDKKQALLEAATAAVAQSGLAASTAAIARSAGVAEGTLF FT RYFATKDELINELYLHLKQSLCQSMIANLDRSLTDAKALTFYIWRSYIRWGLDHTAGHR FT AIRQLAVSEKISKETEQKADDMFPELRDLCHRSVLPIFMSDEYRAFGDALFLTLAETTM FT EFATREPARASEFISLGFEAMWRALTREES" FT misc_feature complement(632740..632877) FT /locus_tag="ROD_05701" FT /note="HMMPfam hit to PF00440, Transcriptional regulator, FT TetR-like, DNA-binding, bacterial/archaeal, score 5.9e-13" FT /inference="protein motif:PFAM:PF00440" FT misc_feature complement(632752..632841) FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT /inference="protein motif:Prosite:PS01081" FT misc_feature complement(632767..632832) FT /note="Predicted helix-turn-helix motif with score FT 1289.000, SD 3.58 at aa 28-49, sequence FT ASTAAIARSAGVAEGTLFRYFA" FT sig_peptide complement(632812..632913) FT /locus_tag="ROD_05701" FT /note="Signal peptide predicted for ROD05701 by SignalP 2.0 FT HMM (Signal peptide probability 0.770) with cleavage site FT probability 0.427 between residues 34 and 35" FT CDS 633175..633516 FT /transl_table=11 FT /gene="ramA" FT /locus_tag="ROD_05711" FT /product="transcriptional activator RamA" FT /db_xref="GOA:D2TMK7" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012287" FT /db_xref="InterPro:IPR018060" FT /db_xref="InterPro:IPR018062" FT /db_xref="InterPro:IPR020449" FT /db_xref="UniProtKB/TrEMBL:D2TMK7" FT /protein_id="CBG87349.1" FT /translation="MTISAQVIDTIVEWIDENLNQPLRIDDIARHAGYSKWHLQRLFMQ FT YKGESLGRYIRERKLLLAARDLRESDEKVYDICLRYGFDSQQTFTRIFTRTFNQPPGAY FT RKENHSRAH" FT misc_feature 633202..633342 FT /gene="ramA" FT /locus_tag="ROD_05711" FT /note="HMMPfam hit to PF00165, Helix-turn-helix, AraC type, FT score 2.6e-11" FT /inference="protein motif:PFAM:PF00165" FT misc_feature 633241..633306 FT /note="Predicted helix-turn-helix motif with score FT 1267.000, SD 3.50 at aa 23-44, sequence FT LRIDDIARHAGYSKWHLQRLFM" FT misc_feature 633349..633477 FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT /inference="protein motif:Prosite:PS00041" FT misc_feature 633358..633492 FT /gene="ramA" FT /locus_tag="ROD_05711" FT /note="HMMPfam hit to PF00165, Helix-turn-helix, AraC type, FT score 4.1e-10" FT /inference="protein motif:PFAM:PF00165" FT CDS complement(633533..633781) FT /transl_table=11 FT /locus_tag="ROD_05721" FT /product="putative exported protein" FT /db_xref="InterPro:IPR010590" FT /db_xref="UniProtKB/TrEMBL:D2TMK8" FT /protein_id="CBG87350.1" FT /translation="MKHPLESLMTAAGILLLAFLSCLLLPAPSLGLVVAQKLVATFHLM FT DLNQLYTLLFCLWFLALGAIEYAVIRYVWRRWFSLAQ" FT misc_feature complement(633536..633781) FT /locus_tag="ROD_05721" FT /note="HMMPfam hit to PF06643, Protein of unknown function FT DUF1158, score 8e-58" FT /inference="protein motif:PFAM:PF06643" FT misc_feature complement(join(633566..633634,633677..633745)) FT /locus_tag="ROD_05721" FT /note="2 probable transmembrane helices predicted for FT ROD05721 by TMHMM2.0 at aa 13-35 and 50-72" FT sig_peptide complement(633689..633781) FT /locus_tag="ROD_05721" FT /note="Signal peptide predicted for ROD05721 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.657 between residues 31 and 32" FT misc_feature complement(633716..633748) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(633852..634967) FT /transl_table=11 FT /gene="ybdK" FT /locus_tag="ROD_05731" FT /product="carboxylate-amine ligase" FT /EC_number="6.3.-.-" FT /db_xref="GOA:D2TMK9" FT /db_xref="InterPro:IPR006336" FT /db_xref="InterPro:IPR011793" FT /db_xref="UniProtKB/TrEMBL:D2TMK9" FT /protein_id="CBG87351.1" FT /translation="MSLPDFHVSEPYTLGIELETQVINPPGYDLSQDSSRLIAAVKDQV FT TAGEVKHDITESMLELATDVCHSIDQAAAQFAAMQQVIMKAAAEHHLEICGGGTHPFQK FT WQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFIA FT LSATSPYMQGADTRFASSRLNIFSGFPDNGPMPWVSNWQEFEGLFRRLSYTSMIESIKD FT LHWDIRPSPHFGTVEVRVMDTPLTLSHAVNIAGLIQATAHWLLTERPFKYQERDYLLYK FT FNRFQACRYGLEGVLTDVHTGEHRKLAEDTLRLLENVSPSADKVGAGSAIEALTLQVRN FT GGSEAQKMREFVADGGSLIGLVKKHCEIWAS" FT misc_feature complement(634092..634931) FT /gene="ybdK" FT /locus_tag="ROD_05731" FT /note="HMMPfam hit to PF04107, Glutamate--cysteine ligase, FT GCS2, score 2.1e-115" FT /inference="protein motif:PFAM:PF04107" FT CDS 635108..635809 FT /transl_table=11 FT /locus_tag="ROD_05741" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TML0" FT /db_xref="InterPro:IPR000182" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:D2TML0" FT /protein_id="CBG87352.1" FT /translation="MPEMNEYGQMVGDALPDWRGASVLERIVLQGRWCRLEPLDPARHA FT EDLFEAYAQASDERDWTWLASNRPDSVAATFHWLSGKTNDDALVPFAVVDARSERSVGL FT VCFMAIEREHGSVEIGHVTWSPRMKKSVLGTEAVWLLLQYAFAQGYRRVEWKCDSLNEA FT SRRAAERTGFVFEGRFRQKIVRKGRNRDSDWLSMIDSEWPQCDRALQRWLAADNFDEQG FT RQKLTLAQCRE" FT misc_feature 635384..635629 FT /locus_tag="ROD_05741" FT /note="HMMPfam hit to PF00583, GCN5-related FT N-acetyltransferase, score 1.1e-07" FT /inference="protein motif:PFAM:PF00583" FT repeat_region 635885..635888 FT /note="4 bp direct repeat" FT repeat_region join(635889..636159,637393..639095) FT /note="region repeated at 4076550..4078622" FT CDS complement(join(635923..636159,637393..638274)) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_05781" FT /product="transposase (pseudogene)" FT /note="pseudogene, disrupted by ISEc14 insertion and an FT internal deletion. ROD38701 is an intact copy of this FT transposase, and is also found adjacent to NleD" FT repeat_region 636160..636162 FT /note="3 bp direct repeat flanking ISEc14" FT repeat_region complement(636163..637392) FT /note="Insertion sequence ISEc14 first identified in FT Escherichia coli B (IS3 family). 98% ID at DNA level FT (blastn), 97% ID at protein level (tblastx), contains 2 FT transposases which have 98% ID to ISEc14 (blastp). Flanked FT by 26bp inverted repeats which contain 4 mismatches. 1 of 6 FT identical (100%) intact ISEc14 elements in CR chromosome. FT 40 bp at 5' terminus of ISEc14 are repeated 0-2 times in FT tandem adjacent to this IS element, immediately upstream FT and/or inverted downstream" FT /note="Flanked by 3 bp direct repeats. No repeats of the FT first 40bp at 5' end of ISEc14 immediately adjacent to this FT IS element" FT repeat_region 636163..636188 FT /note="26 bp terminal inverted repeat of ISEc14, contains 4 FT mismatches" FT CDS complement(636198..637007) FT /transl_table=11 FT /locus_tag="ROD_05761" FT /product="ISEc14 transposase B" FT /db_xref="GOA:D2TKD3" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:D2TKD3" FT /protein_id="CBG87354.1" FT /translation="MTMCRVLNVARAGFYAWLHNPVSARDKDNQRLLILIRDSYSLSGG FT VYGYRRVHGDLNEIGETCGKNRVGRIMQLNRIKAVRGYKAPRRIAGRPSIVAPNRVQRQ FT FTVVRANQVWVTDITYIRTWQGWLYLAVVIDLFARNVVGWSMKPTLSRELALDALMMAV FT WRRKPDGEVIVHSDQGSQYGSDDWQRFCRANHLAPSMSRRGNCWDNAVAESFFSSLKKE FT RIRKRIYKTRALARADIFDYIEVFYNRARRHSHLGGVSPEAFEQASS" FT misc_feature complement(636210..636692) FT /locus_tag="ROD_05761" FT /note="HMMPfam hit to PF00665, Integrase, catalytic core, FT score 1.3e-45" FT /inference="protein motif:PFAM:PF00665" FT misc_feature complement(636558..636581) FT /note="PS00501 Signal peptidases I serine active site." FT /inference="protein motif:Prosite:PS00501" FT CDS complement(637049..637333) FT /transl_table=11 FT /locus_tag="ROD_05771" FT /product="ISEc14 transposase A" FT /db_xref="GOA:D2TK73" FT /db_xref="InterPro:IPR002514" FT /db_xref="InterPro:IPR009057" FT /db_xref="UniProtKB/TrEMBL:D2TK73" FT /protein_id="CBG87355.1" FT /translation="MGTPRFTPEFKEEAVRQITERGYSVAEVSDRLGVSAHSLYKWLRA FT IKPDNSEQHARDLLEAKSEILKLRAQLKRTEEERDILKKAARYFAREPD" FT misc_feature complement(637088..637327) FT /locus_tag="ROD_05771" FT /note="HMMPfam hit to PF01527, Transposase IS3/IS911, score FT 5.2e-23" FT /inference="protein motif:PFAM:PF01527" FT misc_feature complement(637202..637267) FT /note="Predicted helix-turn-helix motif with score FT 1681.000, SD 4.91 at aa 23-44, sequence FT YSVAEVSDRLGVSAHSLYKWLR" FT repeat_region complement(637353..637392) FT /note="40 bp region of ISEc14, repeated 0-2 times in tandem FT direct or inverted repeats adjacent to ISEc14 in other FT locations of the CR genome, but not this copy" FT repeat_region complement(637367..637392) FT /note="26 bp terminal inverted repeat of ISEc14, contains 4 FT mismatches" FT repeat_region 637393..637395 FT /note="3 bp direct repeat flanking ISEc14" FT misc_feature complement(637507..637809) FT /locus_tag="ROD_05781" FT /note="HMMPfam hit to PF01610, Transposase, FT IS204/IS1001/IS1096/IS1165, score 3.2e-32" FT /inference="protein motif:PFAM:PF01610" FT CDS complement(638308..639015) FT /transl_table=11 FT /gene="nleD-1" FT /locus_tag="ROD_05791" FT /product="T3SS effector protein NleD" FT /note="identical to ROD38691 which is located adjacent to FT an identical transposase" FT /db_xref="UniProtKB/TrEMBL:D2TML3" FT /protein_id="CBG87356.1" FT /translation="MRPTSLNLTLPSLPLPSSSNSISATDIQSLVKMSGVRWVKNNQQL FT CFHGTDLKIYQHLEAALDKIESTDTGRTLLNCIELTSRLKSEKLAIHLDSAELGVIAHC FT NADAENSRGTGSDFHCNLNAVEYPCGQGISLVDFHACIVFHELLHVFHNLNGERLKVES FT SQPELQTHSPLLLEEARTVGLGAFSEEVLSENKFREEIGMPRRTFYPHDSSLIHDDNTV FT TQGFQRKKLHPLL" FT misc_feature complement(638563..638592) FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT /inference="protein motif:Prosite:PS00142" FT sig_peptide complement(638947..639015) FT /gene="nleD-1" FT /locus_tag="ROD_05791" FT /note="Signal peptide predicted for ROD05791 by SignalP 2.0 FT HMM (Signal peptide probability 0.965) with cleavage site FT probability 0.621 between residues 23 and 24" FT repeat_region 639096..639099 FT /note="4 bp direct repeat" FT CDS 639283..639435 FT /transl_table=11 FT /gene="hokE1" FT /locus_tag="ROD_05801" FT /product="putative host cell-killing modulation protein" FT /db_xref="GOA:D2TML4" FT /db_xref="InterPro:IPR000021" FT /db_xref="InterPro:IPR018084" FT /db_xref="UniProtKB/TrEMBL:D2TML4" FT /protein_id="CBG87357.1" FT /translation="MLTKYALMAIIVLCVTVLGFTLLVGDSLCEFSVKERGMEFKAVLA FT YEPKK" FT misc_feature 639283..639432 FT /gene="hokE1" FT /locus_tag="ROD_05801" FT /note="HMMPfam hit to PF01848, Hok/gef cell toxic protein, FT score 1.4e-26" FT /inference="protein motif:PFAM:PF01848" FT sig_peptide 639283..639354 FT /gene="hokE1" FT /locus_tag="ROD_05801" FT /note="Signal peptide predicted for ROD05801 by SignalP 2.0 FT HMM (Signal peptide probability 0.969) with cleavage site FT probability 0.446 between residues 24 and 25" FT misc_feature 639295..639354 FT /gene="hokE1" FT /locus_tag="ROD_05801" FT /note="1 probable transmembrane helix predicted for FT ROD05801 by TMHMM2.0 at aa 5-24" FT misc_feature 639310..639369 FT /note="PS00556 Hok/gef family cell toxic proteins FT signature." FT /inference="protein motif:Prosite:PS00556" FT CDS complement(639540..640325) FT /transl_table=11 FT /locus_tag="ROD_05811" FT /product="putative short-chain dehydrogenase/reductase" FT /db_xref="GOA:D2TML5" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR002347" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR020904" FT /db_xref="UniProtKB/TrEMBL:D2TML5" FT /protein_id="CBG87358.1" FT /translation="MIAKDFARQLFNVEGRVAFVTGAGSGIGQIIAYALASAGARVVGF FT DLREDGGLKETVQNIEAIGGQAALYAGDVRQLSDLRAAVALTKERFGRLDIAVNAAGIA FT NANPALEMESEQWQRVIDINLTGVWNSCKAEAELMLESGGGSIINIASMSGIIVNRGLE FT QAHYNSSKAGVIHLSKSLAMEWIEKGIRVNSISPGYTATPMNTRPEMVHQTREFESQTP FT IQRMAKVEEMAGPALFLASDAASFCTGVDLVVDGGFICW" FT misc_feature complement(639768..640280) FT /locus_tag="ROD_05811" FT /note="HMMPfam hit to PF00106, Short-chain FT dehydrogenase/reductase SDR, score 1.6e-30" FT /inference="protein motif:PFAM:PF00106" FT misc_feature complement(639780..639866) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT /inference="protein motif:Prosite:PS00061" FT CDS complement(640359..641156) FT /transl_table=11 FT /gene="budC" FT /locus_tag="ROD_05821" FT /product="acetoin reductase" FT /db_xref="GOA:D2TML6" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR002347" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR020904" FT /db_xref="UniProtKB/TrEMBL:D2TML6" FT /protein_id="CBG87359.1" FT /translation="MQRNFQGKTVVITGACRGIGAGIAERFARDGARLVMVSNAERVHE FT TAEQLRQRYQADILSLQVDVTDEAQVQSLYEQAAARFGTIDVSIQNAGVITIDYFDRMP FT KADFEKVLAVNTTGVWLCCREAAKYMVKQNQGCLINTSSGQGRQGFIYTPHYAASKMGV FT IGITQSLAHELAPWNITVNAFCPGIIESEMWDYNDRVWGEILSSEEKRYGKGELMAEWV FT KGIPMKRAGKPEDVAGLVAFLASDDARYLTGQTINIDGGLIMS" FT misc_feature complement(640632..641135) FT /gene="budC" FT /locus_tag="ROD_05821" FT /note="HMMPfam hit to PF00106, Short-chain FT dehydrogenase/reductase SDR, score 2e-36" FT /inference="protein motif:PFAM:PF00106" FT misc_feature complement(640644..640730) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT /inference="protein motif:Prosite:PS00061" FT CDS complement(641209..642276) FT /transl_table=11 FT /locus_tag="ROD_05831" FT /product="putative sugar ABC transporter, permease protein" FT /db_xref="GOA:D2TML7" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:D2TML7" FT /protein_id="CBG87360.1" FT /translation="MNQKYMIYMYLLKARTFIALLLVIAFFSVMVPNFLTTSNLLIMTQ FT HVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTNGLPIWGGNILFFNVPEV FT ILCVALFGVVVGFINGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNGMEAL FT GNTGFATLGSGTLLGIYLPIWLMIAFLLLGYWITTKTPLGRYIYAIGGNESAARLAGVP FT IVKTKIFVYAFSGLCAAFVGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGR FT VSGSIIGAFVIVFLADGMVMMGVSDFWQMVIKGVVIVTAVVVDQFQQKLQNKVILMRRH FT EEKLAAAPAANTVSS" FT misc_feature complement(641314..642162) FT /locus_tag="ROD_05831" FT /note="HMMPfam hit to PF02653, Bacterial inner-membrane FT translocator, score 1.7e-61" FT /inference="protein motif:PFAM:PF02653" FT misc_feature complement(join(641365..641433,641527..641595, FT 641689..641757,641833..641901,641920..641988, FT 642001..642069,642088..642156,642169..642228)) FT /locus_tag="ROD_05831" FT /note="8 probable transmembrane helices predicted for FT ROD05831 by TMHMM2.0 at aa 17-36, 41-63, 70-92, 97-119, FT 126-148, 174-196, 228-250 and 282-304" FT sig_peptide complement(642172..642276) FT /locus_tag="ROD_05831" FT /note="Signal peptide predicted for ROD05831 by SignalP 2.0 FT HMM (Signal peptide probability 0.793) with cleavage site FT probability 0.426 between residues 35 and 36" FT CDS complement(642294..643838) FT /transl_table=11 FT /locus_tag="ROD_05841" FT /product="putative sugar ABC transporter, ATP-binding FT protein" FT /db_xref="GOA:D2TML8" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TML8" FT /protein_id="CBG87361.1" FT /translation="MQPQNSVAPDSAESEVIIETRELSRVYPGVVALDNVNYRVYRNKV FT NVLIGENGAGKSTMMKMLAGVETPSTGQIFLDGQPVSLNSTHQAEKHGISIIFQELNLF FT PNMNVMDNIFMANEFFQKGRINEKYQYALAKSLLERLELDVDPRAPLGELGIGHQQLVE FT IARALSKDTRVLIMDEPTSALSQSEVKVLFNVIEQLKRRGVTIIYISHRLEELMEIGDY FT ITIFRDGKFISERPVSDASIPWIIEQMVGDKKKHFDYQAAPHGDTVLEVNGLTALHPSG FT GYKLNDVTFSLRKGEVIGIYGLLGAGRTELFKGLVGLMPCQNGDIELNGKRIDSASFQT FT RLKKGLALVPEDRQGEGVVQMMSIQSNMTLSDFSLKGFRRAWRWLNPHKEQASVKEMIQ FT QLAIKVSDPELPITSLSGGNQQKVVLGKALMTQPQVVFLDEPTRGIDVGAKTDVYHLIG FT KMAQQGLAVMFSSSELDEVMALADRILVMADGRITADVPRHAVTREALIAASTPQD" FT misc_feature complement(642369..642956) FT /locus_tag="ROD_05841" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 3.2e-24" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(642552..642596) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(643152..643712) FT /locus_tag="ROD_05841" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 6.3e-45" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(643668..643691) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(643840..644460) FT /transl_table=11 FT /locus_tag="ROD_05851" FT /product="putative lipoprotein" FT /db_xref="InterPro:IPR014582" FT /db_xref="UniProtKB/TrEMBL:D2TML9" FT /protein_id="CBG87362.1" FT /translation="MSKKAWLALAVLTIGGCRIVSQQELQDLKSPPNPHMANIDQTWQT FT QIVPQIVGQARPVAELMAALRAEKDIDSACQKLGFRSQDENPCIFYIKVEGKISQIDTA FT SRSGKMTIADNSGSNVVVQIGPTLRGTQLRDAYKGASYGDFNDQVLFGEYGRAINQQAV FT KMIQAVPLKAGESAQVYGVFSTWDIPQTLPDITPARIVIAGGA" FT sig_peptide complement(644395..644460) FT /locus_tag="ROD_05851" FT /note="Signal peptide predicted for ROD05851 by SignalP 2.0 FT HMM (Signal peptide probability 0.910) with cleavage site FT probability 0.771 between residues 22 and 23" FT misc_feature complement(644410..644442) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(join(644506..644808,644808..645437)) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_05861" FT /product="putative sugar ABC transporter, periplasmic FT protein precursor (pseudogene)" FT /note="pseudogene, truncated by frameshift mutation" FT misc_feature complement(join(644527..644808,644808..645365)) FT /locus_tag="ROD_05861" FT /note="HMMPfam hit to PF00532, Periplasmic binding FT protein/LacI transcriptional regulator, score 1e-07" FT /inference="protein motif:PFAM:PF00532" FT CDS complement(join(645580..646974,646978..647097)) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_05881" FT /product="glycerol kinase (pseudogene)" FT /note="pseudogene, truncated by premature stop codon" FT misc_feature complement(645643..646332) FT /locus_tag="ROD_05881" FT /note="HMMPfam hit to PF02782, Carbohydrate kinase, FGGY, FT score 5.7e-49" FT /inference="protein motif:PFAM:PF02782" FT misc_feature complement(join(646339..646974,646978..647076)) FT /locus_tag="ROD_05881" FT /note="HMMPfam hit to PF00370, Carbohydrate kinase, FGGY, FT score 2.6e-72" FT /inference="protein motif:PFAM:PF00370" FT CDS complement(647441..648391) FT /transl_table=11 FT /gene="sorC" FT /locus_tag="ROD_05891" FT /product="sorbitol operon regulator" FT /db_xref="GOA:D2TMM0" FT /db_xref="InterPro:IPR007324" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TMM0" FT /protein_id="CBG87365.1" FT /translation="MAKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFISRAISRC FT QKEGVVKISVVQPSNIFLNLEKGIEERYGLKQAIVVDTEEDASDHAIKRAIGSAAAHYL FT ETRLRPKDLVGVSSWSSTIRAMVDEVHTQNLKAGGVIQLLGGVGPNGNVQATILTQTLA FT QHLNCEAWLLPSQSIEGSVEEKNRLIASKDVADVISRFDKVDIAIVGIGILEPSQLLKT FT SGNYYHEDMLQVLADRGAVGDICLHYYDKNGQPVLQDDEDPVIGMALDKVKKCPNVVAL FT AGGTDKVAAIKGALNGGYIDVLITDYPTARLLVSA" FT misc_feature complement(647447..648223) FT /gene="sorC" FT /locus_tag="ROD_05891" FT /note="HMMPfam hit to PF04198, Putative sugar-binding FT region, score 1.1e-65" FT /inference="protein motif:PFAM:PF04198" FT misc_feature complement(648263..648328) FT /note="Predicted helix-turn-helix motif with score FT 1966.000, SD 5.88 at aa 22-43, sequence FT RKQSDIAQLLSLSQSFISRAIS" FT CDS 648770..649600 FT /transl_table=11 FT /locus_tag="ROD_05901" FT /product="putative N-terminal region of transketolase" FT /db_xref="InterPro:IPR005474" FT /db_xref="UniProtKB/TrEMBL:D2TMM1" FT /protein_id="CBG87366.1" FT /translation="MNPYNYDIQTLERKARAVRRHIVTLNANSPAGGHTGADLSQVELL FT TALYFRILNVAPDRLDDDERDIYIQSKGHAVGCYYCVLAEAGFFPVDWLATYQHANSHL FT PGHPVRQKTPGIELNTGALGHGLPVAVGLALAAKKNNSARRIFLITGDGELAEGSNWEA FT ALAAAHYGLDNLVIINDKNNLQLAGPTREIMNTDPLADKWRAFGMEVTECQGNDMASVV FT AALEGLQQAGKPNVIIANTTKGAGISFIQGRPEWHHRVPKGEEIALALEELKDE" FT misc_feature 648980..649540 FT /locus_tag="ROD_05901" FT /note="HMMPfam hit to PF00456, Transketolase, N-terminal, FT score 2.9e-34" FT /inference="protein motif:PFAM:PF00456" FT CDS 649593..650534 FT /transl_table=11 FT /locus_tag="ROD_05911" FT /product="putative C-terminal region of transketolase" FT /db_xref="GOA:D2TMM2" FT /db_xref="InterPro:IPR005475" FT /db_xref="InterPro:IPR005476" FT /db_xref="InterPro:IPR009014" FT /db_xref="InterPro:IPR015941" FT /db_xref="UniProtKB/TrEMBL:D2TMM2" FT /protein_id="CBG87367.1" FT /translation="MSNAEHLANVMVQAFIDAVENGVDLVPVVADSTSTAKIAPFISRF FT PDRLVNVGIAEQSMVGTAAGLALGGKVAVTCNAAPFLISRANEQIKVDVCYNNTNVKLF FT GLNAGASYGPLASTHHSIDDLAIMRGFGNIQIFAPSSPRECRQIIDYALAYQGPVYIRM FT DGKALPELYDEGYRFVPGAVVTLREGEELALVATGSTVHEVVDAAALLADAGIQATVVS FT VPSIRPCDTQALLAALKGCKVVMTVEEHNVNGGLGSLVAEALAEAGSGAVLKRSGIPDG FT EYAAAADRGWMRQHHRFDARSVAEQAQELLKR" FT misc_feature 649719..650102 FT /locus_tag="ROD_05911" FT /note="HMMPfam hit to PF02779, Transketolase, central FT region, score 1.8e-19" FT /inference="protein motif:PFAM:PF02779" FT misc_feature 650133..650501 FT /locus_tag="ROD_05911" FT /note="HMMPfam hit to PF02780, Transketolase, C-terminal, FT score 1.6e-24" FT /inference="protein motif:PFAM:PF02780" FT CDS complement(650531..651202) FT /transl_table=11 FT /gene="entD" FT /locus_tag="ROD_05921" FT /product="4'-phosphopantetheinyl transferase (enterobactin FT synthetase component D)" FT /EC_number="2.7.8.-" FT /db_xref="GOA:D2TMM3" FT /db_xref="InterPro:IPR003542" FT /db_xref="InterPro:IPR008278" FT /db_xref="UniProtKB/TrEMBL:D2TMM3" FT /protein_id="CBG87368.1" FT /translation="MPVHSPAFAGECYYRAMQTTHSPLAFAGHTLHVVTFDPASFDERD FT LLWLPHYAQLAKAGRKRKSEHLAGRIAAVHALRQCGYKSVPGIGAQRQPLWPAGLFGSI FT SHCAQTALAVVARHRIGVDIEAWFTPQTAAELADSIVNEDERQRLADGELPFARALTLA FT FSAKESAFKALAPSEQGNAGFSRFQIIAVQPEQMLLRFRHHNLRVQWRFTQEHVITLAR FT F" FT misc_feature complement(650654..650845) FT /gene="entD" FT /locus_tag="ROD_05921" FT /note="HMMPfam hit to PF01648, 4'-phosphopantetheinyl FT transferase, score 2.7e-06" FT /inference="protein motif:PFAM:PF01648" FT CDS complement(651202..653463) FT /transl_table=11 FT /gene="fepA" FT /locus_tag="ROD_05931" FT /product="ferrienterobactin TonB-dependent receptor FT (enterobactin outer-membrane receptor)" FT /db_xref="GOA:D2TMM4" FT /db_xref="InterPro:IPR000531" FT /db_xref="InterPro:IPR010105" FT /db_xref="InterPro:IPR010916" FT /db_xref="InterPro:IPR010917" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:D2TMM4" FT /protein_id="CBG87369.1" FT /translation="MNKKIHSLAILVNLGVYGIALPAVAEETTDSHDDTIVVTAAQQNL FT QAPGVSTITADEIRKNPPARDVAEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENT FT LILIDGKPVTSRNSVRLGWRGERDTRGDTAWVPPEMIERIEVLRGPAAARYGNGAAGGV FT VNIITKKGGDEWHGSWNTYFNAPEHKEEGATKRTNFSLNGPLGGDFSFRLYGNLDKTQA FT DARNINQGHQSERTGSYADTLPAGREGVINKDINGVVRWDFAPMQSLELEAGYSRQGNL FT YAGDTQNTNTNQLVKDNYGKETNRLYRQNYSLTWNGGWDNGVTTSNWVQYEHTRNSRTP FT EGLAGGTEGIFDPKASQKYVDADLNDVTLHSEVSVPLDLLVNQNLTLGTEWTQQRMKDM FT LSTSQTFMGGDIPGYDSSDRSPYSKAEIFSLFAENNMELTDSTMLTPGLRFDHHSIVGN FT NWSPSLNLSQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQGCYATGAATGIGCY FT MMGNDDLKAETSINKEIGLEFKRDGWLAGITWFRNDYRNKIEAGTVPMDRTSTISKGKT FT VYTDIYQWENVPKAVVEGLEGTLNVPVSETVNWTNNITYMLQSKNKETGERLSIIPEYT FT LNSTLSWQVRQDVSLQSTFTWYGKQEPKKYDYQGKPVTGSDKQTISPYSIVGLSATWDV FT TKNVSLTGGVDNVFDKRLWREGNAQTTGSTTDASYMRGAGAYTYNEPGRTWFMSVNTHF FT " FT misc_feature complement(651205..652083) FT /gene="fepA" FT /locus_tag="ROD_05931" FT /note="HMMPfam hit to PF00593, TonB-dependent receptor, FT beta-barrel, score 1.2e-32" FT /inference="protein motif:PFAM:PF00593" FT misc_feature complement(651205..651258) FT /note="PS01156 TonB-dependent receptor proteins signature FT 2." FT /inference="protein motif:Prosite:PS01156" FT misc_feature complement(651916..651948) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(652975..653337) FT /gene="fepA" FT /locus_tag="ROD_05931" FT /note="HMMPfam hit to PF07715, TonB-dependent receptor, FT plug, score 1.3e-29" FT /inference="protein motif:PFAM:PF07715" FT misc_feature complement(653341..653463) FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT /inference="protein motif:Prosite:PS00430" FT sig_peptide complement(653389..653463) FT /gene="fepA" FT /locus_tag="ROD_05931" FT /note="Signal peptide predicted for ROD05931 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 25 and 26" FT CDS 653908..655158 FT /transl_table=11 FT /gene="fes" FT /locus_tag="ROD_05951" FT /product="enterochelin esterase (ferric enterobactin FT esterase)" FT /db_xref="GOA:D2TMM5" FT /db_xref="InterPro:IPR000801" FT /db_xref="InterPro:IPR005153" FT /db_xref="InterPro:IPR014756" FT /db_xref="InterPro:IPR015166" FT /db_xref="InterPro:IPR021764" FT /db_xref="UniProtKB/TrEMBL:D2TMM5" FT /protein_id="CBG87370.1" FT /translation="MQRITGTDVWQWCTRLSGNWRGSYCFIPSDRDDIFADLKPGVTPD FT RAALREGWRQLLPLAIADPLNPLSWRGGRGHAVSALEMPQAPAQPGWDDPQPPLSAPVL FT LQWRSRRLGNTRRVWVFTSTENTDDERPLAILLDGQFWAESMPVWPALTSLTRRRELPP FT AVYVLIDAIDIAQRSRELPCNADFWLAVQEELLPQVSAVAPFSDRPERTIVAGQSFGGL FT ASLYAGLKWPARFGCVLSQSGSYWWPHRGGQQAGAIIEQLKAGELCAQGLRIILEAGVN FT EPLILRANQALYAQLHTTQQSVFWRQVDGGHDALCWRGGLMQGLIDLWRPLGRTGDLPR FT QELSMEFTNPFDNPQGQFYILQNSQRQFSLWPQQCALPEGWQVVCEPQSQEACQQWLES FT RWTTLVPQHYAVAREAL" FT misc_feature 654208..654891 FT /gene="fes" FT /locus_tag="ROD_05951" FT /note="HMMPfam hit to PF00756, Putative esterase, score FT 1.4e-62" FT /inference="protein motif:PFAM:PF00756" FT misc_feature 654940..655149 FT /gene="fes" FT /locus_tag="ROD_05951" FT /note="HMMPfam hit to PF03621, MbtH-like protein, score FT 5.9e-30" FT /inference="protein motif:PFAM:PF03621" FT CDS 655155..659042 FT /transl_table=11 FT /gene="entF" FT /locus_tag="ROD_05961" FT /product="enterobactin synthetase component F" FT /EC_number="2.7.7.-" FT /db_xref="GOA:D2TMM6" FT /db_xref="InterPro:IPR000873" FT /db_xref="InterPro:IPR001031" FT /db_xref="InterPro:IPR001242" FT /db_xref="InterPro:IPR006162" FT /db_xref="InterPro:IPR006163" FT /db_xref="InterPro:IPR009081" FT /db_xref="InterPro:IPR010071" FT /db_xref="InterPro:IPR020845" FT /db_xref="UniProtKB/TrEMBL:D2TMM6" FT /protein_id="CBG87371.1" FT /translation="MSRRLPLVAAQPGIWMAEKLSTLPSAWSVAHYVALNGELDAPLLA FT RAIVTGMQQADTLRMRFSEDNGDVWQWVDESLTFAEPPITDLRHAADPHQAALAVMQAD FT LQQNLRADSGKPLAFQQLIQVADDRWYWYQRYHHLLVDGFSFPAITRQIAMIYRAWQRG FT DATPASPFTPFADVVDEYQQYRQSDAWQRDGAFWAQQRSELPPPASLSSAPLPGRAATA FT DILRLKLNAPEGAFRRLSAHFPDAQRADLALALVTLWLGRVCNRMEYAAGFIFMRRMGS FT AALTASGPVLNVLPLAVRIDAAESLAELAQRLSAQLKKMRRHQRYDAEQIVRDGGRAAG FT EEPLFGPVLNVKVFDYQLDLPGIRAQTHTLATGPVNDLELALFPDEEGGLSIELLANRQ FT RYDEATLTKHAARLTAMIEQFAENPALRCGDAEMLLTSEYQQFAWINATAVEIPATTLS FT ALVAQQASRTPDAPALADSLYQFSYREMREQVVALATLLRQRGVKPGDSVAVALPRSVF FT LTLALHGIVEAGAAWLPLDTGYPDDRLRMMLEDAGPKLLITTEEQLPRFSDIPGLESLC FT YAEPLAGGDTAPLGLSQPQHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYRLTA FT DDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAAPEAHRDPFAMQHFFSRYGVTTTHFVP FT SMLAAFVAALTPESARQSCATLKHVFCSGEALPADLCREWEQLTHAPLHNLYGPTEAAV FT DVSWYPASGEALAAVNGSSVPIGFPVWNTGLRILDAMMHPVPVGVAGDLYLTGIQLAQG FT YLGRPDLTASRFIADPFAPGERMYRTGDVARWLDNGAVEYLGRSDDQLKIRGQRIELGE FT IDRVMQALPDVEQAVAHACVFNQAAATGGDARQLVGYLVSRSGLPLNIPALQAQLRDKL FT PPHMVPVVLLQLAQLPLSANGKLDRKALPMPELTRRVKGRAPRPGAESRVAQAFSALLG FT CEVDDVEADFFALGGHSLLAMKLAAQLSRDCARQVTPGQVMVASTVAQLAALLAADDDA FT QSRRLGFETLLPLRKSDGPTLFCFHPASGFAWQFSVLSRYLSPQWSITGIQSPRPHGPM FT QTAADLDAVCERHLTTLLAQQPHGPYYLLGYSLGGTLAQGIAARLRARGETVAFLGLLD FT TWPPETQNWSEKEANGLDPEVLAEIDRERQAFLAARQGNTSDELFGIIEGNYADAVRLL FT TTAHSVPFDGRATLFVAERTLPEGVSPEKSWAPWIAELEVYRQDCAHVDIISPAAFESI FT GPIVARKLNGG" FT misc_feature 655155..656057 FT /gene="entF" FT /locus_tag="ROD_05961" FT /note="HMMPfam hit to PF00668, Condensation domain, score FT 3e-60" FT /inference="protein motif:PFAM:PF00668" FT misc_feature 656598..657815 FT /gene="entF" FT /locus_tag="ROD_05961" FT /note="HMMPfam hit to PF00501, AMP-dependent synthetase and FT ligase, score 4.6e-159" FT /inference="protein motif:PFAM:PF00501" FT misc_feature 656952..656987 FT /note="PS00455 Putative AMP-binding domain signature." FT /inference="protein motif:Prosite:PS00455" FT misc_feature 658086..658280 FT /gene="entF" FT /locus_tag="ROD_05961" FT /note="HMMPfam hit to PF00550, Phosphopantetheine-binding, FT score 3.6e-13" FT /inference="protein motif:PFAM:PF00550" FT misc_feature 658092..658124 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 658155..658202 FT /note="PS00012 Phosphopantetheine attachment site." FT /inference="protein motif:Prosite:PS00012" FT misc_feature 658353..659030 FT /gene="entF" FT /locus_tag="ROD_05961" FT /note="HMMPfam hit to PF00975, Thioesterase, score 6e-52" FT /inference="protein motif:PFAM:PF00975" FT CDS complement(659092..659895) FT /transl_table=11 FT /gene="fepC" FT /locus_tag="ROD_05971" FT /product="ferric enterobactin transport ATP-binding FT protein" FT /db_xref="GOA:D2TMM7" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TMM7" FT /protein_id="CBG87372.1" FT /translation="MIESVARLRGDQLTLGYGKYTVAENLSVSIPDGHFTAIIGPNGCG FT KSTLLRTLSRLMTPAHGHVWLDGEHIQRYASKEVARRIGLLAQNATTPGDITVQELVAR FT GRYPHQPLFTRWRKEDEEAVARAMRATGITHLANQNVDTLSGGQRQRAWIAMVLAQETS FT IMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYATHLIALRDGKI FT VAEGAPKEIVSAELIEQIYGLRCTIIADPVAGTPLVVPLGRTKRK" FT misc_feature complement(659236..659799) FT /gene="fepC" FT /locus_tag="ROD_05971" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 5.5e-54" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(659422..659466) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(659755..659778) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(659892..660884) FT /transl_table=11 FT /gene="fepG" FT /locus_tag="ROD_05981" FT /product="ferric enterobactin transport protein" FT /db_xref="GOA:D2TMM8" FT /db_xref="InterPro:IPR000522" FT /db_xref="UniProtKB/TrEMBL:D2TMM8" FT /protein_id="CBG87373.1" FT /translation="MMRVSRRLLVSCLSLIVGCLILGVWSLRSGAVPLDTSQIFAALLG FT DAPRNITMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGV FT LVAMVLFGQQLTAIALAAMAGGILTSLVVWLLAWRNGIDTFRLIIIGIGMRAMLVAFNT FT WLLLKASLETALTAGLWNAGSLNGLTWSKTWPSAPLIILMLFCAALLVRRMRLLEMGDD FT SACALGVSVERSRLLMMLVAVALTAAATALAGPISFIALVAPHIARRISGTARWGLTQS FT ALCGGLLLLAADLGAQQLFMPYQLPVGVVTVSLGGIYLIALLIQESRKK" FT misc_feature complement(659910..660830) FT /gene="fepG" FT /locus_tag="ROD_05981" FT /note="HMMPfam hit to PF01032, Bacterial transport system FT permease protein, score 1.3e-133" FT /inference="protein motif:PFAM:PF01032" FT misc_feature complement(join(659913..659981,660099..660167, FT 660252..660305,660384..660452,660471..660539, FT 660549..660608,660645..660713,660798..660866)) FT /gene="fepG" FT /locus_tag="ROD_05981" FT /note="8 probable transmembrane helices predicted for FT ROD05981 by TMHMM2.0 at aa 7-29, 58-80, 93-112, 116-138, FT 145-167, 194-211, 240-262 and 302-324" FT sig_peptide complement(660792..660884) FT /gene="fepG" FT /locus_tag="ROD_05981" FT /note="Signal peptide predicted for ROD05981 by SignalP 2.0 FT HMM (Signal peptide probability 0.998) with cleavage site FT probability 0.875 between residues 31 and 32" FT misc_feature complement(660828..660860) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(660881..661885) FT /transl_table=11 FT /gene="fepD" FT /locus_tag="ROD_05991" FT /product="ferric enterobactin transport protein" FT /db_xref="GOA:D2TMM9" FT /db_xref="InterPro:IPR000522" FT /db_xref="UniProtKB/TrEMBL:D2TMM9" FT /protein_id="CBG87374.1" FT /translation="MSCSVSVTRAIAVPGLLLLLIVATALSLIIGAKPLPTAVVLDALS FT GSCHSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNSGASFA FT IVLGAALFGFSSPQEQLAMAFAGALTASLIVAFTGSQGGGQLSPVRLTLAGVALAAVLE FT GLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLRVVIVPVLIAGATALMLSRALNSLSL FT GSDTATALGSKVARTQLIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWS FT LPVTLLATPALLLFADIIGRLIVPGELRVSVLSAFIGAPVLMFLVRRRPRGIA" FT misc_feature complement(660902..661831) FT /gene="fepD" FT /locus_tag="ROD_05991" FT /note="HMMPfam hit to PF01032, Bacterial transport system FT permease protein, score 8e-135" FT /inference="protein motif:PFAM:PF01032" FT misc_feature complement(join(660908..660964,660974..661042, FT 661100..661168,661241..661309,661370..661438, FT 661466..661525,661538..661606,661634..661693, FT 661790..661858)) FT /gene="fepD" FT /locus_tag="ROD_05991" FT /note="9 probable transmembrane helices predicted for FT ROD05991 by TMHMM2.0 at aa 10-32, 65-84, 94-116, 121-140, FT 150-172, 193-215, 240-262, 282-304 and 308-326" FT sig_peptide complement(661790..661885) FT /gene="fepD" FT /locus_tag="ROD_05991" FT /note="Signal peptide predicted for ROD05991 by SignalP 2.0 FT HMM (Signal peptide probability 0.835) with cleavage site FT probability 0.527 between residues 32 and 33" FT CDS 662036..663283 FT /transl_table=11 FT /gene="entS" FT /locus_tag="ROD_06001" FT /product="enterobactin exporter" FT /db_xref="GOA:D2TMN0" FT /db_xref="InterPro:IPR010290" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="InterPro:IPR023722" FT /db_xref="UniProtKB/TrEMBL:D2TMN0" FT /protein_id="CBG87375.1" FT /translation="MNKNSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQIQ FT MMTHSTWQVGLSVTLTGCAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLNAM FT LPEPSLIAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP FT MLGGLLLASGGVAWNYGLAAAGTFITLLPLLSLPALPPPPQPREHPLTSLLAAFRFLLA FT SPLIGGIALLGGLLTMASAVRVLYPALASGWQMSAAQIGLLYAAIPLGAAVGALTSGQL FT AHSARPGLVMLISTVGSFLAIGLFALMPVWALGMVCLALFGWLSAVSSLLQYTMLQTQT FT PEHMLGRINGLWTAQNVTGDAIGAALLGGLGAVMTPVASASVSGFGLVAVGVMLMLLLS FT ELRRFRQQPGEAPQAG" FT misc_feature join(662099..662167,662195..662263,662366..662434, FT 662477..662545,662564..662632,662675..662743, FT 662813..662881,662939..663007,663068..663136, FT 663164..663232) FT /gene="entS" FT /locus_tag="ROD_06001" FT /note="10 probable transmembrane helices predicted for FT ROD06001 by TMHMM2.0 at aa 22-44, 54-76, 111-133, 148-170, FT 177-199, 214-236, 260-282, 302-324, 345-367 and 377-399" FT misc_feature 662099..663151 FT /gene="entS" FT /locus_tag="ROD_06001" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 1.1e-23" FT /inference="protein motif:PFAM:PF07690" FT misc_feature 662192..662224 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(663369..664316) FT /transl_table=11 FT /gene="fepB" FT /locus_tag="ROD_06011" FT /product="ferrienterobactin-binding periplasmic protein FT precursor" FT /db_xref="GOA:D2TMN1" FT /db_xref="InterPro:IPR002491" FT /db_xref="UniProtKB/TrEMBL:D2TMN1" FT /protein_id="CBG87376.1" FT /translation="MRLSSLPGLLIALFVFGFSSAQAADWPRQITDSRGSHTLAHKPER FT IISTSVTLTGSLLAIDAPVVASGATTPNNRVADDRGFLRQWSEVAKARKLTRLYIGEPS FT AEAIAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQTLLTQLGEITGQE FT KQAASRIAEFDKKLASVKQQLTLPPQPVSALVYTAAAHSANLWTPESAQGQLLEQLGFT FT LAPLPGGLQASQSQGKRHDIIQLGGENLAAGLNGEALFLFAGDEKDEKAIYANPLLAHL FT PAVQNKRVYALGTESFRLDYYSAMRVLDRIAALF" FT misc_feature complement(663429..664190) FT /gene="fepB" FT /locus_tag="ROD_06011" FT /note="HMMPfam hit to PF01497, Periplasmic binding protein, FT score 1.1e-58" FT /inference="protein motif:PFAM:PF01497" FT sig_peptide complement(664248..664316) FT /gene="fepB" FT /locus_tag="ROD_06011" FT /note="Signal peptide predicted for ROD06011 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.994 between residues 23 and 24" FT CDS 664498..665673 FT /transl_table=11 FT /gene="entC" FT /locus_tag="ROD_06021" FT /product="isochorismate synthase" FT /EC_number="5.4.4.2" FT /db_xref="GOA:D2TMN2" FT /db_xref="InterPro:IPR004561" FT /db_xref="InterPro:IPR005801" FT /db_xref="InterPro:IPR015890" FT /db_xref="UniProtKB/TrEMBL:D2TMN2" FT /protein_id="CBG87377.1" FT /translation="MDTSLAEDVQQTMATLAPDRFFFMSPYRSFTTSGCFARFDEPAVN FT GDSPDSSFQKKLHTLFADARAAGIDKPVVVGAIPFDTRQPSALFIPEARESFSRPQKQH FT ASRSFTAHQSLNVIERKAIPEQKTFETMVARAAALTATPEVDKVVLSRLIDITTDGDID FT SGALLERLVAQNPVSYNFHVSLQDGVVLLGASPELLLRKEGDRFSSLPLAGSARRQPDE FT VLDREAGNRLLASEKDRHEHELVTQAMKAVLRDRSSDLQLPDSPQLITTPTLWHLGTPF FT EGKANAGENALTLACLLHPTPALSGFPHQAAKRLIAELEPFDRELFGGIVGWCDAEGNG FT EWVVTIRCARLHKNQVRLFAGAGIVPASSPVGEWRETGVKLSTMLNVFGLH" FT misc_feature 664870..665661 FT /gene="entC" FT /locus_tag="ROD_06021" FT /note="HMMPfam hit to PF00425, Chorismate binding, FT C-terminal, score 1.3e-111" FT /inference="protein motif:PFAM:PF00425" FT CDS 665683..667290 FT /transl_table=11 FT /gene="entE" FT /locus_tag="ROD_06031" FT /product="enterobactin synthetase component E" FT /EC_number="2.7.7.58" FT /EC_number="2.3.1.-" FT /db_xref="GOA:D2TMN3" FT /db_xref="InterPro:IPR000873" FT /db_xref="InterPro:IPR011963" FT /db_xref="InterPro:IPR020845" FT /db_xref="UniProtKB/TrEMBL:D2TMN3" FT /protein_id="CBG87378.1" FT /translation="MSIPFTRWPDDLARRYREKGYWQDLPLTDILTRHADSDSTAVIDG FT ERRLSYRELNQAADNLACSLRRQGIQPGETALVQLGNVAELYITFFALLKLGVAPVLAL FT FSHQRSELTAYAQQIEPALLIADRQHALFAADDFLPTFIAQHNSIRVVHLLNDSGERCL FT QTAIKTPAADFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSNEICRFTA FT QTRFLCAIPAAHNYAMSSPGSLGVFLAGGIVVLAADPSATLCFPLIEKHQINATALVPP FT AVSLWLQAISEWGSNAQLASLKLLQVGGARLSASLAARIPAEIGCQLQQVFGMAEGLVN FT YTRLDDSPQRIIHTQGRPMCPDDEVWVADADGNPLPQGETGRLMTRGPYTFRGYFKSPE FT HNASAFDANGFYCSGDLISIDEDGYITVHGREKDQINRGGEKIAAEEIENLLLRHPAVI FT HAALVSMDDELMGEKSCAWLVVKEPLRAVQVRRFLREQGVAEFKLPDRVETVEALPLTP FT VGKVDKKQLRQWLATRPA" FT misc_feature 665830..667068 FT /gene="entE" FT /locus_tag="ROD_06031" FT /note="HMMPfam hit to PF00501, AMP-dependent synthetase and FT ligase, score 1.9e-105" FT /inference="protein motif:PFAM:PF00501" FT misc_feature 666241..666276 FT /note="PS00455 Putative AMP-binding domain signature." FT /inference="protein motif:Prosite:PS00455" FT CDS 667304..668161 FT /transl_table=11 FT /gene="entB" FT /locus_tag="ROD_06041" FT /product="isochorismatase" FT /EC_number="3.3.2.1" FT /db_xref="GOA:D2TMN4" FT /db_xref="InterPro:IPR000868" FT /db_xref="InterPro:IPR006163" FT /db_xref="InterPro:IPR009081" FT /db_xref="InterPro:IPR016291" FT /db_xref="UniProtKB/TrEMBL:D2TMN4" FT /protein_id="CBG87379.1" FT /translation="MAIPKLQAYALPDAQDIPTNKVSWAFDPERAALLIHDMQDYFVSF FT WGENCPMMEQVIANIAALRDYCKAHHIPVYYTAQPKAQSDEDRALLNDMWGPGLTRSPE FT QQKVVESLTPDEADTVLVKWRYSAFHRSPLEQMLKETGRNQLIITGVYAHIGCMTTATD FT AFMRDIKPFMVADALADFSREEHLMALNYVAGRAGRVVMTQDLLPAPVPASKEDLRALI FT LPLLDESEEPMDDENLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDGWWKLLS FT REVK" FT misc_feature 667379..667927 FT /gene="entB" FT /locus_tag="ROD_06041" FT /note="HMMPfam hit to PF00857, Isochorismatase hydrolase, FT score 6e-102" FT /inference="protein motif:PFAM:PF00857" FT misc_feature 667949..668143 FT /gene="entB" FT /locus_tag="ROD_06041" FT /note="HMMPfam hit to PF00550, Phosphopantetheine-binding, FT score 5.3e-11" FT /inference="protein motif:PFAM:PF00550" FT CDS 668161..668916 FT /transl_table=11 FT /gene="entA" FT /locus_tag="ROD_06051" FT /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase" FT /EC_number="1.3.1.28" FT /db_xref="GOA:D2TMN5" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR003560" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR020904" FT /db_xref="UniProtKB/TrEMBL:D2TMN5" FT /protein_id="CBG87380.1" FT /translation="MAGFDFRGKTVWVTGAGKGIGYATARAFAEAGAQVTGFDRAFVLS FT DYPFACEVMDVADAEQVSDVCQRLLAQTERLDVLVNAAGILRMGATDALSQDDWQQTLA FT VNVGGAFNLFQQTMAQFRRQQGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGL FT ELAGSGVRCNVVSPGSTDTDMQRTLWQSDDAEQQRIRGFGEQFKLGIPLGKIARPQEIA FT STIMFLASDLASHITLQDIVVDGGSTLGA" FT misc_feature 668167..668190 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 668185..668658 FT /gene="entA" FT /locus_tag="ROD_06051" FT /note="HMMPfam hit to PF00106, Short-chain FT dehydrogenase/reductase SDR, score 7.3e-24" FT /inference="protein motif:PFAM:PF00106" FT misc_feature 668560..668646 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT /inference="protein motif:Prosite:PS00061" FT CDS 668916..669332 FT /transl_table=11 FT /locus_tag="ROD_06061" FT /product="esterase" FT /EC_number="3.1.-.-" FT /db_xref="GOA:D2TMN6" FT /db_xref="InterPro:IPR003736" FT /db_xref="InterPro:IPR006683" FT /db_xref="UniProtKB/Swiss-Prot:D2TMN6" FT /protein_id="CBG87381.1" FT /translation="MMIWKRHLTLAELNATSQNTMVAHLGIVYTRLGDDVLEAEMPVDS FT RTHQPFGLLHGGASAALAETLGSMAGFLLTRDGQCVVGTELNATHHRPVSQGKVRGVCQ FT PLHLGRQSQSWEIVVFDEQGRRCCTCRLGTAVIG" FT misc_feature 669066..669299 FT /locus_tag="ROD_06061" FT /note="HMMPfam hit to PF03061, Thioesterase superfamily, FT score 1.2e-22" FT /inference="protein motif:PFAM:PF03061" FT CDS complement(669370..670482) FT /transl_table=11 FT /locus_tag="ROD_06071" FT /product="putative carboxypeptidase g2" FT /db_xref="GOA:D2TMN7" FT /db_xref="InterPro:IPR002933" FT /db_xref="InterPro:IPR011650" FT /db_xref="InterPro:IPR017150" FT /db_xref="UniProtKB/TrEMBL:D2TMN7" FT /protein_id="CBG87382.1" FT /translation="MNLEKYIAELQTLVNVDCGTSTIDGVARVAEIVRQLWLQEGWRVD FT TVNLGDAVGPGLFVTNKPDAEKFDVLLVGHLDTVFPPGTVAERPLSRDETRLYGPGVSD FT MKSGLLNILWAMRTLAPEHRERLAIAVAMNPDEETGSVHSHEWIGELAKKSRCVLVCEA FT ARADGSLVKARKGMAGYHLTFSGVAAHAGNEPEKGRSAITALANSIVAINALADSSTGT FT TLNVGVVRGGSAANVVPDSAFAELDVRFWQNEEDARVRQALQTMCEQGFLEGVATTLTL FT VTHKPAMAASEATGELMALVEQAGKEEGIAISWQAVGGGSDANHTAALGIPTLDGLGPV FT GAGFHSPKEWLDIASIEPRIRLLRRILSQL" FT misc_feature complement(669376..670272) FT /locus_tag="ROD_06071" FT /note="HMMPfam hit to PF01546, Peptidase M20, score 1e-30" FT /inference="protein motif:PFAM:PF01546" FT misc_feature complement(669658..669969) FT /locus_tag="ROD_06071" FT /note="HMMPfam hit to PF07687, Peptidase M20, dimerisation, FT score 2.6e-28" FT /inference="protein motif:PFAM:PF07687" FT misc_feature complement(670246..670275) FT /note="PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family FT signature 1." FT /inference="protein motif:Prosite:PS00758" FT CDS complement(670497..670961) FT /transl_table=11 FT /locus_tag="ROD_06081" FT /product="putative membrane protein" FT /db_xref="GOA:D2TMN8" FT /db_xref="InterPro:IPR011642" FT /db_xref="UniProtKB/TrEMBL:D2TMN8" FT /protein_id="CBG87383.1" FT /translation="MSVPNARPVITDVFVEGARKGWNIATSSTLPNVVMAFIIIKALEI FT TGALKGMGMVFAPLMGLFGLPGEAAAVLIGGWMSMGGGIGVAIGLFDKGILTGQHLAIL FT APAIYLMGSQVQYLGRILGVIGTQARRIPLMIAISIVNAFIAMLLMRIIL" FT misc_feature complement(join(670503..670571,670608..670676, FT 670689..670757,670761..670829,670842..670901)) FT /locus_tag="ROD_06081" FT /note="5 probable transmembrane helices predicted for FT ROD06081 by TMHMM2.0 at aa 21-40, 45-67, 69-91, 96-118 and FT 131-153" FT misc_feature complement(670587..670886) FT /locus_tag="ROD_06081" FT /note="HMMPfam hit to PF07670, Nucleoside recognition, FT score 9e-10" FT /inference="protein motif:PFAM:PF07670" FT CDS complement(670961..671680) FT /transl_table=11 FT /locus_tag="ROD_06091" FT /product="putative membrane protein" FT /db_xref="GOA:D2TMN9" FT /db_xref="InterPro:IPR011642" FT /db_xref="UniProtKB/TrEMBL:D2TMN9" FT /protein_id="CBG87384.1" FT /translation="MSSSDVKEQKTGAGAYFALAFAAVFFSGLLGGKEWYGVFDFTTLN FT GAFGRVVSGVSQQGDTIATTTSAFRGVGGNGAMDGFLFALGLIPAVMFALGMINVLEHY FT GALRAARRLLTPLLRPLMGIPGNTGLALIGSLQSTDVGASLTRNLSDEGQITEKEKDIF FT AMFQFSAGAMITNFFSSGAILFTLIAMDGTPAVPTSIGVCIMVMFVMKIFGANLMRLIL FT TFNNKSAPVTTAEKGEA" FT misc_feature complement(join(671030..671098,671111..671179, FT 671375..671443,671585..671644)) FT /locus_tag="ROD_06091" FT /note="4 probable transmembrane helices predicted for FT ROD06091 by TMHMM2.0 at aa 13-32, 80-102, 168-190 and FT 195-217" FT misc_feature complement(671051..671431) FT /locus_tag="ROD_06091" FT /note="HMMPfam hit to PF07670, Nucleoside recognition, FT score 8.9e-10" FT /inference="protein motif:PFAM:PF07670" FT CDS 671982..674087 FT /transl_table=11 FT /gene="cstA" FT /locus_tag="ROD_06101" FT /product="carbon starvation protein A" FT /db_xref="GOA:D2TMP0" FT /db_xref="InterPro:IPR003706" FT /db_xref="UniProtKB/TrEMBL:D2TMP0" FT /protein_id="CBG87385.1" FT /translation="MNKSGKYLIWTLLSVLGAFALGYIALNRGEQINALWIVVASVCVY FT LIAYRFYGLYIARNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVG FT PVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGATAGVIA FT LVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYLRYLRPGRIGEVS FT VIGLVFLVFAIISGGWVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLLAPRDY FT LSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIACGAVSG FT FHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFAMNSPMAV FT LAPAGTTDVVASAAQVVSSWGFTITPDTLNQIASEVGEQSIISRAGGAPTLAVGMAYIL FT HGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVISPGLKRTDSLPA FT NLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFRMKRQ FT RYAWVALAPTAWLLICTLTAGWQKAFSPDAKIGFLAIANKFQAMIDSGNIPPQYTESQL FT AQLVFNNRLDAGLTIFFMVVVVVLALFSIKTALAALKEDKPTAKETPYQPMPANVDQIV FT AQAKGVH" FT sig_peptide 671982..672047 FT /gene="cstA" FT /locus_tag="ROD_06101" FT /note="Signal peptide predicted for ROD06101 by SignalP 2.0 FT HMM (Signal peptide probability 0.930) with cleavage site FT probability 0.527 between residues 22 and 23" FT misc_feature join(672000..672059,672075..672143,672246..672314, FT 672327..672395,672456..672524,672552..672620, FT 672633..672701,672744..672812,672831..672899, FT 672957..673025,673062..673130,673173..673241, FT 673302..673370,673383..673442,673521..673580, FT 673623..673691,673710..673778,673926..673994) FT /gene="cstA" FT /locus_tag="ROD_06101" FT /note="18 probable transmembrane helices predicted for FT ROD06101 by TMHMM2.0 at aa 7-26, 32-54, 89-111, 116-138, FT 159-181, 191-213, 218-240, 255-277, 284-306, 326-348, FT 361-383, 398-420, 441-463, 468-487, 514-533, 548-570, FT 577-599 and 649-671" FT misc_feature 672075..673289 FT /gene="cstA" FT /locus_tag="ROD_06101" FT /note="HMMPfam hit to PF02554, Carbon starvation protein FT CstA, score 8.9e-297" FT /inference="protein motif:PFAM:PF02554" FT misc_feature 672450..672482 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 672954..672986 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 673098..673130 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 674141..674338 FT /transl_table=11 FT /locus_tag="ROD_06111" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007423" FT /db_xref="UniProtKB/TrEMBL:D2TMP1" FT /protein_id="CBG87386.1" FT /translation="MFDTLSKAGKYLGQAAKLMIGVPDYDNYVAHMRATHPEQTPMTYE FT EFFRERQDARYGGKGGARCC" FT misc_feature 674141..674335 FT /locus_tag="ROD_06111" FT /note="HMMPfam hit to PF04328, Protein of unknown function FT DUF466, score 6.9e-44" FT /inference="protein motif:PFAM:PF04328" FT CDS complement(674420..675049) FT /transl_table=11 FT /locus_tag="ROD_06121" FT /product="ParB-like nuclease" FT /db_xref="GOA:D2TMP2" FT /db_xref="InterPro:IPR003115" FT /db_xref="UniProtKB/TrEMBL:D2TMP2" FT /protein_id="CBG87387.1" FT /translation="MGNPMQQRLKQELTRFLSSLSEEERIKAINEFRMVIHSVSPFRDE FT PVDCVLWVKNEQITPNDYNPNNVAPPEKKLLLKSIEADGFTQPIVVSQARSGEYEIVDG FT FHRHELGKGKAAIRSRLKGYLPVSCLERTRHERMAATIRHNRARGRHQIHAMSEIVREL FT ALLGWSDERIGKELGMDEDEVLRLKQINGLQELFANRRYSKAWTVK" FT misc_feature complement(674612..674899) FT /locus_tag="ROD_06121" FT /note="HMMPfam hit to PF02195, ParB-like nuclease, score FT 7.2e-16" FT /inference="protein motif:PFAM:PF02195" FT CDS complement(675022..676245) FT /transl_table=11 FT /locus_tag="ROD_06131" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TMP3" FT /db_xref="InterPro:IPR002500" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR021845" FT /db_xref="UniProtKB/TrEMBL:D2TMP3" FT /protein_id="CBG87388.1" FT /translation="MSVYKIPLEQNVLEAAEERIAWTLENLPRVCVSFSGGKDSGIMLH FT LTAKLARQSGKKISVLFIDWEAQFSCTIRYIEAMREMYSDVIEQFYWVALPMTTQNSLS FT QFQQEWQCWEPNTCWVRQPPADAITDTAFFPFYQAGMTFEQFVRDFADWFSNKRPAAML FT VGIRADESYNRFVAIANLSKQRFADDKPWTTSAPGGHTWYIYPMYDWQTADIWTWFGRT FT RLPCNPLYNLMYQAGVPPRYMRICEPFGPEQRQGLWLYHVLEPERWATMCARVSGVRSG FT GIYAGQGNHFYGHRKILKPEHLSWQEYAMLLLFSMPEETAEHYRNKIAAYLHWYKKNGL FT DEIPQTQQGDIGSKDIPSWRRICKVLLNNDYWCRALSFSPTKPRSYQRYSERMKAKRKE FT WGILCNND" FT misc_feature complement(676054..676161) FT /locus_tag="ROD_06131" FT /note="HMMPfam hit to PF01171, PP-loop, score 0.00014" FT /inference="protein motif:PFAM:PF01171" FT CDS complement(676400..677302) FT /transl_table=11 FT /locus_tag="ROD_06141" FT /product="transcriptional regulator" FT /db_xref="GOA:D2TMP4" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TMP4" FT /protein_id="CBG87389.1" FT /translation="MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSL FT QRLRTQLNDPLFIRSGKGITPTTMGINLHHHLENNLNSLEQTINIMHETDIRKKFIIYG FT PQIIISSNVLMLIKQIRQNRNIEIEHHDIIASKESAEDLLAYRKADLVISLYAVNNLSI FT VCKPSRPVECVLICNKDHPRIHEHSSLDEITEEQFTMLMHDDPGVKEFQLHPDNIIKGR FT KIGFRSQSVISIANVIATTDIIGFIPKPVYDFYQPLLGFKRVAYPLSTPSLRLYYMYNR FT ASLNNKLFAEVISCLDNVP" FT misc_feature complement(677090..677269) FT /locus_tag="ROD_06141" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 1.3e-20" FT /inference="protein motif:PFAM:PF00126" FT misc_feature complement(677135..677227) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature complement(677165..677230) FT /note="Predicted helix-turn-helix motif with score FT 1741.000, SD 5.12 at aa 25-46, sequence FT LSISKAAETLYITPSAVSQSLQ" FT CDS complement(677507..678253) FT /transl_table=11 FT /gene="dsbG" FT /locus_tag="ROD_06151" FT /product="thiol:disulfide interchange protein" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR018950" FT /db_xref="UniProtKB/TrEMBL:D2TMP5" FT /protein_id="CBG87390.1" FT /translation="MLKRTLLLALLPFGAYAEELPAPVKAIEQQGITIIKSFDAPGGMK FT GYLGKYQDMGVTIYLTPDGKQAISGYMYNEKGDNLSNQLIEKEIYAPAGRELWQRMEKA FT SWLLEGSKEAPVVLYVFADPFCPYCKQFWQQARPWVESGKVQLRTLLVGVIKPESPATA FT AAILAAKDPAKAWRDYENSAGKMTLNVPASIDARYKETLNHNEKIMDDLGANVTPAIYY FT MSRENTLQQVIGLPDKQQLAAMMESH" FT sig_peptide complement(678203..678253) FT /gene="dsbG" FT /locus_tag="ROD_06151" FT /note="Signal peptide predicted for ROD06151 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 17 and 18" FT CDS 678629..679192 FT /transl_table=11 FT /gene="ahpC" FT /locus_tag="ROD_06161" FT /product="alkyl hydroperoxide reductase subunit C" FT /EC_number="1.11.1.15" FT /db_xref="GOA:D2TMP6" FT /db_xref="InterPro:IPR000866" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR017559" FT /db_xref="InterPro:IPR019479" FT /db_xref="InterPro:IPR024706" FT /db_xref="UniProtKB/TrEMBL:D2TMP6" FT /protein_id="CBG87391.1" FT /translation="MSLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTF FT VCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGAL FT TRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPG FT EVCPAKWKEGEATLAPSLDLVGKI" FT misc_feature 678638..679030 FT /gene="ahpC" FT /locus_tag="ROD_06161" FT /note="HMMPfam hit to PF00578, Alkyl hydroperoxide FT reductase/ Thiol specific antioxidant/ Mal allergen, score FT 7.5e-40" FT /inference="protein motif:PFAM:PF00578" FT CDS 679435..681000 FT /transl_table=11 FT /gene="ahpF" FT /locus_tag="ROD_06171" FT /product="alkyl hydroperoxide reductase subunit F" FT /EC_number="1.8.1.-" FT /db_xref="GOA:D2TMP7" FT /db_xref="InterPro:IPR000103" FT /db_xref="InterPro:IPR001327" FT /db_xref="InterPro:IPR002109" FT /db_xref="InterPro:IPR008255" FT /db_xref="InterPro:IPR012081" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR013027" FT /db_xref="InterPro:IPR023753" FT /db_xref="UniProtKB/TrEMBL:D2TMP7" FT /protein_id="CBG87392.1" FT /translation="MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAE FT LSPKVTFKEENSLPVRKPSFLITNPGSDRGPRFAGSPLGHEFTSLVLALLWTGGHPSKE FT TQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEI FT TDRNVMGVPAVFVNGKEFGQGRMTLAEIVAKVDTGAEKRAAEELNKRDAYDVLIVGSGP FT AGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYD FT VDVIDSQSASRLVPAAVEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTK FT GVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDK FT IRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNVELAGIFVQIGLLPNTNWL FT EGAIERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSSFDYLIR FT TKTA" FT misc_feature 680074..680916 FT /gene="ahpF" FT /locus_tag="ROD_06171" FT /note="HMMPfam hit to PF07992, FAD-dependent pyridine FT nucleotide-disulphide oxidoreductase, score 8.4e-46" FT /inference="protein motif:PFAM:PF07992" FT misc_feature 680467..680529 FT /note="PS00573 Pyridine nucleotide-disulphide FT oxidoreductases class-II active site." FT /inference="protein motif:Prosite:PS00573" FT misc_feature 680503..680784 FT /gene="ahpF" FT /locus_tag="ROD_06171" FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, NAD-binding region, FT score 1.6e-23" FT /inference="protein motif:PFAM:PF00070" FT CDS complement(681056..681544) FT /transl_table=11 FT /locus_tag="ROD_06181" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TMP8" FT /protein_id="CBG87393.1" FT /translation="MLTQLAAAFRSKSSIGPKLAALPKITRICRIASLAKSYLLRRKSL FT TTGFPVMNAGQEENQTQIDVYETNRFKKTVDKLPEALQEEVEDQIDIILANPQIGELKK FT GDLSHLRVHKFRLNGQLTLLGYTWLEDKIELYLLHVGSHENFYDEQKKHRKADLKLIG" FT CDS 681712..681954 FT /transl_table=11 FT /locus_tag="ROD_06191" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TMP9" FT /protein_id="CBG87394.1" FT /translation="MSRNATFWRKQLLASTAGEAAKADLLFSSASATDFLSVVQSWQYQ FT IEVYQPVHDYNKEPISLTLTGLNPGEYLNQALEAA" FT CDS complement(682013..683110) FT /transl_table=11 FT /locus_tag="ROD_06201" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TMQ0" FT /protein_id="CBG87395.1" FT /translation="MLYVDIPCREEFSRLSDIRSDACISIYLETSPIRQNLDASKIQLS FT NFIKEALQQVEEKGIDKRRLAMLEEELCSVLEDVEFWDFHARSLAILATPESITTYRLA FT NNLPDRLEVSERFYLKPLLRALTFPHSAYILALSVNEARLIEFFADVPPAEVIVPNMPT FT CRRDAMCEAALNDHHHGAVHHKVRLAQYTRKVDQALRPLFISHDYPLFLVAAEPLASIY FT RATNSLSNLTDETLFTNADHMSISDLVSQVRPLLDNYYQAQLDSLKTRFEIRSGERRVT FT QELSDAARAATFGAIELLLINIESAIKGTIDEDGLISFDDNKHSYGIIDEIAKRAMATG FT ARVLAVRGEDLPAGADLYAILRYPL" FT CDS complement(683298..683732) FT /transl_table=11 FT /gene="uspF" FT /locus_tag="ROD_06211" FT /product="universal stress protein f" FT /db_xref="GOA:D2TMQ1" FT /db_xref="InterPro:IPR006015" FT /db_xref="InterPro:IPR006016" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:D2TMQ1" FT /protein_id="CBG87396.1" FT /translation="MTRKLLIPVDVTESELAHTIITHTQNESRFDTAEIHFLSVVQPFP FT YYPALGGRHSVHIPSIDELVDDARKTLEKTVRNFELPDVKTFVHVIAGSPKDKILEMAE FT KLSIDLIIISSRRDKFTKFLLGSTTSAVVRHAECPVLVVR" FT misc_feature complement(683301..683732) FT /gene="uspF" FT /locus_tag="ROD_06211" FT /note="HMMPfam hit to PF00582, UspA, score 7e-20" FT /inference="protein motif:PFAM:PF00582" FT CDS complement(684093..684650) FT /transl_table=11 FT /gene="uspG" FT /locus_tag="ROD_06221" FT /product="universal stress protein G" FT /note="Note the extended C-terminus" FT /db_xref="GOA:D2TMQ2" FT /db_xref="InterPro:IPR006015" FT /db_xref="InterPro:IPR006016" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:D2TMQ2" FT /protein_id="CBG87397.1" FT /translation="MYKTIIMPVDVFEMELSDKAIRHAEFLAQQDGVIHLLHVLPGSAS FT MSLHRFAADVRRFEEHLQHEAETRLQTMVSHFSIDPSRIKQHVRFGSVRDVVNELGEEL FT DADVVVIGSRSPSITTHLLGSNASSVVRHATLPVLVVRLVRRFRNKPCPGLSSLMGSVQ FT FSQGFFLQDYAKSGKDLFRPDE" FT misc_feature complement(684225..684650) FT /gene="uspG" FT /locus_tag="ROD_06221" FT /note="HMMPfam hit to PF00582, UspA, score 1.9e-16" FT /inference="protein motif:PFAM:PF00582" FT CDS 684869..686107 FT /transl_table=11 FT /locus_tag="ROD_06231" FT /product="putative oxidoreductase" FT /db_xref="GOA:D2TMQ3" FT /db_xref="InterPro:IPR002085" FT /db_xref="InterPro:IPR002328" FT /db_xref="InterPro:IPR011032" FT /db_xref="InterPro:IPR013149" FT /db_xref="InterPro:IPR013154" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TMQ3" FT /protein_id="CBG87398.1" FT /translation="MKALTYHGPHHVQVENVPDPIIEQPDDIILRITATAICGSDLHLY FT RGKIPQVKHGDIFGHEFMGEVVETGRDVRNVQKGDRVVIPFVIACGDCFFCRLQQYSAC FT ENTNTGKGAALNKKQIPPPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLLSDD FT KALFLSDILPTAWQAAKNAQIQKGSSVAVFGAGPVGLLTIACARLLGAEQIFIVDHHPY FT RLRFAEERYGAIPINFDDHNDAAEIIIEQTAGHRGVDAVIDAVGFEAKGSTTETVLTNL FT KLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLSFKMGQTHVHAWL FT GELLPLLEQGLLKPEEIVTHYMPFEEAARGYEIFEKRQEECRKVILVPGAQSPEVAQKS FT VKGLVNAMPGGVI" FT misc_feature 684941..685330 FT /locus_tag="ROD_06231" FT /note="HMMPfam hit to PF08240, Alcohol dehydrogenase FT GroES-like, score 6.6e-49" FT /inference="protein motif:PFAM:PF08240" FT misc_feature 685043..685087 FT /note="PS00059 Zinc-containing alcohol dehydrogenases FT signature." FT /inference="protein motif:Prosite:PS00059" FT misc_feature 685424..685915 FT /locus_tag="ROD_06231" FT /note="HMMPfam hit to PF00107, Alcohol dehydrogenase, FT zinc-binding, score 7.2e-23" FT /inference="protein motif:PFAM:PF00107" FT misc_feature 685451..685483 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(686338..686748) FT /transl_table=11 FT /gene="rnk" FT /locus_tag="ROD_06241" FT /product="regulator of nucleoside diphosphate kinase" FT /db_xref="GOA:D2TMQ4" FT /db_xref="InterPro:IPR001437" FT /db_xref="InterPro:IPR023459" FT /db_xref="UniProtKB/TrEMBL:D2TMQ4" FT /protein_id="CBG87399.1" FT /translation="MSRPPIIINDLDAERIDRLLEQPAYADLPIADALNAELDRARMCS FT PETMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAAMTDSNTQLSLMAPVGAALLGLRVG FT DTIHWQLPGGVSAHLEVLELEYQPEAAGDFLR" FT CDS 687023..687859 FT /transl_table=11 FT /locus_tag="ROD_06251" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TMQ5" FT /db_xref="InterPro:IPR000073" FT /db_xref="InterPro:IPR000639" FT /db_xref="UniProtKB/TrEMBL:D2TMQ5" FT /protein_id="CBG87400.1" FT /translation="MSQYDKLTLKDGSYLYFKDWGDSSGQPIVFSHGWPLTADAFEDQM FT FFLGQKGFRVIAHDRRGHGRSAQPWDGHNMDQYADDLAELTAHLNLQEAVHVGHSTGGG FT EVARYIGRHGTGRVAKAALISAVTPIMVKTDFNPNGVPKEVFDGIREGVVNDRAAFFYE FT LTAAFYGYNREGAKESKAVRESFVEQGLQGSIKGLYDCIKAFSETDLREDLRKMTIPTL FT VIHGDDDQIVPFETCGKVAAEILPDAQLKVYAGGSHGICTTHKQQINQDLLNFIQS" FT misc_feature 687179..687844 FT /locus_tag="ROD_06251" FT /note="HMMPfam hit to PF00561, Alpha/beta hydrolase fold-1, FT score 1.6e-37" FT /inference="protein motif:PFAM:PF00561" FT CDS complement(687940..688734) FT /transl_table=11 FT /gene="rna" FT /locus_tag="ROD_06261" FT /product="ribonuclease I" FT /db_xref="GOA:D2TMQ6" FT /db_xref="InterPro:IPR001568" FT /db_xref="InterPro:IPR018188" FT /db_xref="UniProtKB/TrEMBL:D2TMQ6" FT /protein_id="CBG87401.1" FT /translation="MKKSLLLAVSLLPLSAAFAAPLQPRQYGDFDRYVLALSWQTGFCQ FT SQHERNRHEPDECRLQKEVASKVDYLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPV FT PDLPEARASRKCAAPETGLSLESAARLSEVMPGAGGRSCLERYEYAKHGACFGFDPDAY FT FDTMVRLNKEIKDSELGQFLGENYGKRVSRSAFDAAFARRWGKENIRAVKLSCHGNPAY FT LTEIQFSLKAEAINAPLSAASFAPQPHPGNCGKQFILDTVGY" FT misc_feature complement(688270..688305) FT /note="PS00531 Ribonuclease T2 family histidine active site FT 2." FT /inference="protein motif:Prosite:PS00531" FT misc_feature complement(688501..688524) FT /note="PS00530 Ribonuclease T2 family histidine active site FT 1." FT /inference="protein motif:Prosite:PS00530" FT sig_peptide complement(688678..688734) FT /gene="rna" FT /locus_tag="ROD_06261" FT /note="Signal peptide predicted for ROD06261 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 19 and 20" FT CDS complement(688848..690311) FT /transl_table=11 FT /gene="citT" FT /locus_tag="ROD_06271" FT /product="citrate carrier" FT /db_xref="GOA:D2TMQ7" FT /db_xref="InterPro:IPR001898" FT /db_xref="UniProtKB/TrEMBL:D2TMQ7" FT /protein_id="CBG87402.1" FT /translation="MSLSKDNIWKLLAPLIVMGVMFLIPVPDGMPPQAWHYFAVFVAMI FT VGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAGKQALKWGLAGFSSTTV FT WLVFGAFIFALGYEVTGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTART FT GGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEF FT VSKIAGVQISWLQWFLSFLPVGIILLIVAPWLSYVLYKPEVTHSAEVAAWAGDELKTMG FT NLTRKEWTLIGLVLLSLGLWVFGGKMINATAVGLLAVSLMLALHVVPWKDITKYNSAWN FT TLVNLATLVVMANGLTRSGFIDWFAGTMSAHLEGFSPNATVIVLVLVFYFAHYLFASLS FT AHTATMLPVILAIGKGIPGVPMEHLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSR FT DYWRLGAIFGVIYISMLLLVGWPILAMWS" FT misc_feature complement(688854..690299) FT /gene="citT" FT /locus_tag="ROD_06271" FT /note="HMMPfam hit to PF00939, Sodium/sulphate symporter, FT score 1.3e-285" FT /inference="protein motif:PFAM:PF00939" FT misc_feature complement(join(688857..688925,688962..689030, FT 689124..689192,689229..689297,689325..689378, FT 689397..689450,689547..689615,689652..689720, FT 689841..689900,689961..690029,690087..690140, FT 690153..690212,690240..690293)) FT /gene="citT" FT /locus_tag="ROD_06271" FT /note="13 probable transmembrane helices predicted for FT ROD06271 by TMHMM2.0 at aa 7-24, 34-53, 58-75, 95-117, FT 138-157, 198-220, 233-255, 288-305, 312-329, 339-361, FT 374-396, 428-450 and 463-485" FT misc_feature complement(688956..688988) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(689001..689033) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(690336..691244) FT /transl_table=11 FT /gene="citG" FT /locus_tag="ROD_06281" FT /product="2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A FT synthase" FT /EC_number="2.7.8.25" FT /db_xref="GOA:D2TMQ8" FT /db_xref="InterPro:IPR002736" FT /db_xref="InterPro:IPR017551" FT /db_xref="UniProtKB/TrEMBL:D2TMQ8" FT /protein_id="CBG87403.1" FT /translation="MLPIHATSADTTALPHSLFDAYGHLAWRAMLTEVNLSPKPGLVDR FT LNCGAHKDMSLKDFHRSALAIQGWLPRFIEYGASCAQLAAESVLSGLRPLGMACEADMF FT RATAGVNTHKGTIFSLGLLCAAIGRLHQSQQSVTPESLCATAAAFCRGLTERELRNNNQ FT QLTAGQRLYQQLGLTGARGEAEAGYPLVIRHALPHYRSLLATGRDPELALLDTLLLLIA FT LNGDTNVASRGGAAGLRWIQQQAKTLLQNGGIRTSADLNLLHQFDQACIERNLSPGGSA FT DLLIVTWFLAQISQVKHLHNY" FT misc_feature complement(690381..691163) FT /gene="citG" FT /locus_tag="ROD_06281" FT /note="HMMPfam hit to PF01874, FT Triphosphoribosyl-dephospho-CoA protein, score 1.1e-129" FT /inference="protein motif:PFAM:PF01874" FT CDS complement(691216..691767) FT /transl_table=11 FT /gene="citX" FT /locus_tag="ROD_06291" FT /product="apo-citrate lyase phosphoribosyl-dephospho-CoA FT transferase" FT /EC_number="2.7.7.61" FT /db_xref="GOA:D2TMQ9" FT /db_xref="InterPro:IPR005551" FT /db_xref="UniProtKB/TrEMBL:D2TMQ9" FT /protein_id="CBG87404.1" FT /translation="MHLLPEQASRHAVSIPELLASRDERQARQNVWLKRHPTPLVSFTV FT VAPGPIKDSALTRRIFNHGVTALRALAENSGWSIREQAALASASGPEGMLSIEAPARDI FT KLATIGLEQTHPLGRLWDIDVLTPGGEILSRRHFALPARRCLLCGRSAAECARGKTHTL FT ADLLNHMEALLHAANSRDVR" FT misc_feature complement(691225..691737) FT /gene="citX" FT /locus_tag="ROD_06291" FT /note="HMMPfam hit to PF03802, Apo-citrate lyase FT phosphoribosyl-dephospho-CoA transferase, score 3.1e-89" FT /inference="protein motif:PFAM:PF03802" FT misc_feature complement(691288..691311) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(691771..693303) FT /transl_table=11 FT /gene="citF" FT /locus_tag="ROD_06301" FT /product="citrate lyase alpha chain" FT /EC_number="2.8.3.10" FT /db_xref="GOA:D2TMR0" FT /db_xref="InterPro:IPR006472" FT /db_xref="UniProtKB/TrEMBL:D2TMR0" FT /protein_id="CBG87405.1" FT /translation="MTQKIEQTQRQERVAAWRRRADSDLSSFTSTSKQNQQAQKPRDQK FT LCASLEEAIRRSGLQDGMTISFHHAFRGGDLTINLVMETIASMGFKNLTLASSSLSDCH FT APLVDHIRKGVVSRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNIDVA FT FLGVPSCDPSGNANGYTGKACCGSLGYARVDAESAKQVVLLTEQLLPYPHNPASIAQDQ FT VDLIVRIDRVGDADKIGADATRMTTNPRELLIARSAAEVIANSGYFKEGFSLQTGTGGA FT SLAVTRFLEDKMRSRDIRADFALGGITATIVELHEKGLIRKLLDVQSFDRNAAESLARN FT PNHIEISANQYANWGSKGASVDRLDVVVLSALEVDTQFNVNVLTGSDGVIRGASGGHCD FT TAVAAALSIIVAPLVRGRIPTLVDNVLTCVTPGSSVDILVTDHGIAVNPARPELAERLQ FT EAGMKVVSIEWLRERAQQLTGEPRPIEFTDRVIAVVRYRDGSVIDVVHQVKE" FT misc_feature complement(691780..693174) FT /gene="citF" FT /locus_tag="ROD_06301" FT /note="HMMPfam hit to PF04223, Citrate lyase, alpha FT subunit, score 0" FT /inference="protein motif:PFAM:PF04223" FT misc_feature complement(692203..692232) FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT /inference="protein motif:Prosite:PS00339" FT CDS complement(693314..694222) FT /transl_table=11 FT /gene="citE" FT /locus_tag="ROD_06311" FT /product="citrate lyase beta chain" FT /EC_number="4.1.3.34" FT /db_xref="GOA:D2TMR1" FT /db_xref="InterPro:IPR005000" FT /db_xref="InterPro:IPR006475" FT /db_xref="InterPro:IPR011206" FT /db_xref="InterPro:IPR015813" FT /db_xref="UniProtKB/TrEMBL:D2TMR1" FT /protein_id="CBG87406.1" FT /translation="MISASLQQRKSRTRRSMLFVPGANAAMVSNSFIYPADALMFDLED FT SVALREKDTARRMVYHALQHPLYREVETIVRVNALDSEFGINDLEAVVRGGADVVRLPK FT TDTAQDVIDIENEILRIEKACGREAGSTGLLAAIESPLGITRAVEIAHASERLIGIALG FT AEDYVRNLRTERSPEGTELLFARCSILQAARSAGIQAFDTVYSDANNEAGFLHEAAHIK FT QLGFDGKSLINPRQIELLHNLYAPTQKEVAHARLVVEAAEAAAREGLGVVSLNGKMVDS FT PVIERARLVLSRAELSGIREE" FT misc_feature complement(693521..694180) FT /gene="citE" FT /locus_tag="ROD_06311" FT /note="HMMPfam hit to PF03328, HpcH/HpaI aldolase, score FT 6.1e-118" FT /inference="protein motif:PFAM:PF03328" FT CDS complement(694219..694515) FT /transl_table=11 FT /gene="citD" FT /locus_tag="ROD_06321" FT /product="citrate lyase acyl carrier protein (citrate lyase FT gamma chain)" FT /db_xref="GOA:D2TMR2" FT /db_xref="InterPro:IPR006495" FT /db_xref="InterPro:IPR023439" FT /db_xref="UniProtKB/TrEMBL:D2TMR2" FT /protein_id="CBG87407.1" FT /translation="MKINQAVVAGTLESGDVMIRIAPLETQEIDLQINSSVEKQFGDAI FT RATILAVLAQYDVRGVQINVDDKGALDCILRARLEALLARASGIPALPWEDRQ" FT misc_feature complement(694225..694515) FT /gene="citD" FT /locus_tag="ROD_06321" FT /note="HMMPfam hit to PF04953, Citrate lyase acyl carrier FT protein CitD, score 3.4e-59" FT /inference="protein motif:PFAM:PF04953" FT CDS complement(694512..695588) FT /transl_table=11 FT /gene="citC" FT /locus_tag="ROD_06331" FT /product="citrate (pro-3S)-lyase] ligase" FT /EC_number="6.2.1.22" FT /db_xref="GOA:D2TMR3" FT /db_xref="InterPro:IPR000182" FT /db_xref="InterPro:IPR004821" FT /db_xref="InterPro:IPR005216" FT /db_xref="InterPro:IPR013166" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:D2TMR3" FT /protein_id="CBG87408.1" FT /translation="MFSNNVFTRVKRSENIKMAEIAQFLKENDLSVDTTVEVFITVTRD FT DRLIACGGIAGNIIKCVAICESVRGEGLALTLATELINLAYERHCTHLFIYTKTEYEAL FT FRQCGFSTLATVPDIMVLMENSTTRLKRYAESLGKQRHDGKKIGSIVMNANPFTNGHRY FT LIQQAAAQCDWLHLFLVKEDTSRFPYVDRLDLVLKGTADIPRLTVHPGSEYIISRATFP FT CYFIKEQSVINHCYTEIDLKIFRQYLAPALGITHRFVGTEPFCSVTAQYNRDMRFWLDT FT PTLPAPPIELVEIERLCFQGTPVSASLVRKLLVKKDLTAIASLVPQATLHYLQQMSERS FT ASGATVRQQTPALVTGEK" FT misc_feature complement(694590..695150) FT /gene="citC" FT /locus_tag="ROD_06331" FT /note="HMMPfam hit to PF08218, Citrate lyase ligase, FT C-terminal, score 2.1e-126" FT /inference="protein motif:PFAM:PF08218" FT misc_feature complement(695256..695471) FT /gene="citC" FT /locus_tag="ROD_06331" FT /note="HMMPfam hit to PF00583, GCN5-related FT N-acetyltransferase, score 1.8e-05" FT /inference="protein motif:PFAM:PF00583" FT CDS 695978..697639 FT /transl_table=11 FT /gene="dpiB" FT /locus_tag="ROD_06341" FT /product="two-component sensor kinase" FT /EC_number="2.7.13.3" FT /db_xref="GOA:D2TMR4" FT /db_xref="InterPro:IPR000014" FT /db_xref="InterPro:IPR003594" FT /db_xref="InterPro:IPR004358" FT /db_xref="InterPro:IPR005467" FT /db_xref="InterPro:IPR013767" FT /db_xref="InterPro:IPR016120" FT /db_xref="InterPro:IPR016121" FT /db_xref="UniProtKB/TrEMBL:D2TMR4" FT /protein_id="CBG87409.1" FT /translation="MLVQKNKKPFSFFRQLAFPLRIFLLILAFSVLIIAALAQYFSASF FT EDYLSLHVRDMAMNQAKIIAANDSIIAAVKQRDYKRLATIADKLQSDTDFDYVVIGDKN FT SIRLYHPNPEKIGYPMQFTRPGALERGESYFITGKGSIGMAMRAKTPIFDDEGQVIGVV FT SIGYLVSKIDSWRLDFILPMAGVFVLLLVVLMLLSWFFAAHIRRQMMGMEPKQIARVVR FT QQEALFSSVYEGLIAVDPEGFITAINRSARKMLGLRSPGRQWLGKRIAEVVSPSDFFTD FT RIAEKRVDVMMNFNGLSVIANREAIRSGEELLGAIISFRSKDEIATLNAQLTQIKQYVE FT SLRTLRHEHLNWMSTLNGLLQMKEYDRVREMVQGESQAQQQLIDSLRDAFADRQVAGLL FT FGKVQRARELGLKMEIVPGSQLHQLPEGLDSTEFAAIVGNLLDNAFEASLRTAEGNKVV FT ELYLSDEGDDVVIEVADQGCGVPEALRDKIFEQGVSTRSDEPGEHGIGLYLIASYVGRC FT GGMITLEDNFPCGTLFSLFIPKVKKNNDGTTNPVNR" FT sig_peptide 695978..696091 FT /gene="dpiB" FT /locus_tag="ROD_06341" FT /note="Signal peptide predicted for ROD06341 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.789 between residues 38 and 39" FT misc_feature join(696035..696103,696515..696583) FT /gene="dpiB" FT /locus_tag="ROD_06341" FT /note="2 probable transmembrane helices predicted for FT ROD06341 by TMHMM2.0 at aa 20-42 and 180-202" FT misc_feature 696641..696832 FT /gene="dpiB" FT /locus_tag="ROD_06341" FT /note="HMMPfam hit to PF00989, PAS fold, score 6.9e-06" FT /inference="protein motif:PFAM:PF00989" FT misc_feature 697259..697597 FT /gene="dpiB" FT /locus_tag="ROD_06341" FT /note="HMMPfam hit to PF02518, ATP-binding region, FT ATPase-like, score 1.1e-25" FT /inference="protein motif:PFAM:PF02518" FT CDS 697608..698285 FT /transl_table=11 FT /gene="dpiA" FT /locus_tag="ROD_06351" FT /product="two-component response regulator" FT /db_xref="GOA:D2TMR5" FT /db_xref="InterPro:IPR001789" FT /db_xref="InterPro:IPR011006" FT /db_xref="InterPro:IPR024187" FT /db_xref="UniProtKB/TrEMBL:D2TMR5" FT /protein_id="CBG87410.1" FT /translation="MTEPLTLLIVEDEMLLAEMHAEYIRHIPGFNQIWLAGNLAQARMM FT IRRFKPGLILLDNYLPDGKGITLLHELRETHYPGGVVFTTAASDMETVSEAVRSGAFDY FT LIKPIAYERLGQTLTRYQQRKRMLEGNDSASQRQIDEMFNAYARGEPKDELPTGIDALT FT LNAVKKLFADPQVHHTAETVSQALTISRTTARRYLEYCASRHLITAEIVHGKVGRPQRI FT YRG" FT misc_feature 697620..697964 FT /gene="dpiA" FT /locus_tag="ROD_06351" FT /note="HMMPfam hit to PF00072, Response regulator receiver, FT score 6.1e-24" FT /inference="protein motif:PFAM:PF00072" FT misc_feature 698139..698204 FT /note="Predicted helix-turn-helix motif with score FT 1208.000, SD 3.30 at aa 178-199, sequence FT HTAETVSQALTISRTTARRYLE" FT CDS complement(698385..699770) FT /transl_table=11 FT /gene="dcuC" FT /locus_tag="ROD_06361" FT /product="anaerobic C4-dicarboxylate transporter" FT /db_xref="GOA:D2TMR6" FT /db_xref="InterPro:IPR004669" FT /db_xref="InterPro:IPR018385" FT /db_xref="UniProtKB/TrEMBL:D2TMR6" FT /protein_id="CBG87411.1" FT /translation="MLTVIELLIGVVVIVGVARYIIKGYSATGVLFVGGLVLLIISALM FT GHKVLPASESSTGYTATDIIEYIKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMVVK FT LASRPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRGAAA FT AICASPAAIILSPTSGDVVLAAKAAEMPLIDFAFKTTLPISIAAIIGMAIAHFFWQRYL FT DKKENITREILDVNEITTTAPAFYAILPFTPIIGVLVFDGKWGPQLHIITILVLCMLIA FT AVLEFVRGFNTQKVFSGLEVAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQSLISIA FT TSFGSASIILMLVLVILTMLAAMTTGSGNAPFYAFVEMIPKLAHSSGINPAYLSIPMLQ FT ASNLGRTISPVSGVVVAVAGMAKISPFEVVKRTSVPVMVGLLIVIIATEVMVPGASTAV FT TGG" FT misc_feature complement(join(698397..698465,698697..698765, FT 698775..698843,698904..698963,698991..699059, FT 699117..699176,699219..699287,699300..699359, FT 699369..699437,699474..699533,699633..699686, FT 699705..699761)) FT /gene="dcuC" FT /locus_tag="ROD_06361" FT /note="12 probable transmembrane helices predicted for FT ROD06361 by TMHMM2.0 at aa 4-22, 29-46, 80-99, 112-134, FT 138-157, 162-184, 199-218, 238-260, 270-289, 310-332, FT 336-358 and 436-458" FT misc_feature complement(698415..699758) FT /gene="dcuC" FT /locus_tag="ROD_06361" FT /note="HMMPfam hit to PF03606, C4-dicarboxylate anaerobic FT carrier, score 2.3e-202" FT /inference="protein motif:PFAM:PF03606" FT CDS 700214..700792 FT /transl_table=11 FT /gene="pagP" FT /locus_tag="ROD_06371" FT /product="putative antimicrobial peptide resistance and FT lipid A acylation protein" FT /db_xref="GOA:D2TMR7" FT /db_xref="InterPro:IPR009746" FT /db_xref="InterPro:IPR011250" FT /db_xref="UniProtKB/Swiss-Prot:D2TMR7" FT /protein_id="CBG87412.1" FT /translation="MVVNVVIVAKKYFLFITLLIIQVSLPAHAGTDEKGWFNTFTDNVA FT ETWREPEHYDLYIPAITWHARFAYDKRKTDRYNERPWGGGFGQSRWDEKGNWHGLYVMA FT FKDSWNKWEPIGGYGWESTWRPLPDDNFHLGLGFTAGVTARDNWKYIPVPVLLPLASIG FT YGPATFQMTYIPGTYNNGNVYFAWMRFQF" FT sig_peptide 700214..700300 FT /gene="pagP" FT /locus_tag="ROD_06371" FT /note="Signal peptide predicted for ROD06371 by SignalP 2.0 FT HMM (Signal peptide probability 0.982) with cleavage site FT probability 0.981 between residues 29 and 30" FT misc_feature 700247..700306 FT /gene="pagP" FT /locus_tag="ROD_06371" FT /note="1 probable transmembrane helix predicted for FT ROD06371 by TMHMM2.0 at aa 12-31" FT misc_feature 700337..700780 FT /gene="pagP" FT /locus_tag="ROD_06371" FT /note="HMMPfam hit to PF07017, Antimicrobial peptide FT resistance and lipid A acylation PagP, score 1.1e-115" FT /inference="protein motif:PFAM:PF07017" FT CDS 700937..701176 FT /transl_table=11 FT /gene="cspE" FT /locus_tag="ROD_06381" FT /product="cold shock-like protein" FT /db_xref="GOA:D2TMR8" FT /db_xref="InterPro:IPR002059" FT /db_xref="InterPro:IPR011129" FT /db_xref="InterPro:IPR012156" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR016027" FT /db_xref="InterPro:IPR019844" FT /db_xref="UniProtKB/TrEMBL:D2TMR8" FT /protein_id="CBG87413.1" FT /translation="MSIFHVKVILMSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSA FT IQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL" FT misc_feature 700973..701173 FT /gene="cspE" FT /locus_tag="ROD_06381" FT /note="HMMPfam hit to PF00313, Cold-shock protein, FT DNA-binding, score 2e-44" FT /inference="protein motif:PFAM:PF00313" FT misc_feature 701015..701074 FT /note="PS00352 'Cold-shock' DNA-binding domain signature." FT /inference="protein motif:Prosite:PS00352" FT CDS complement(701231..701614) FT /transl_table=11 FT /gene="crcB" FT /locus_tag="ROD_06391" FT /product="putative membrane protein" FT /db_xref="GOA:D2TMR9" FT /db_xref="InterPro:IPR003691" FT /db_xref="UniProtKB/TrEMBL:D2TMR9" FT /protein_id="CBG87414.1" FT /translation="MLQLLLAVFIGGGTGSVARWMLSMRFNPVHQAIPIGTLTANLLGA FT FIIGMGLAWFSRMTNIDPMWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFAWALLNVA FT VNLLGSFAMTALAFWLFSAASAN" FT misc_feature complement(701252..701602) FT /gene="crcB" FT /locus_tag="ROD_06391" FT /note="HMMPfam hit to PF02537, Camphor resistance CrcB FT protein, score 1e-57" FT /inference="protein motif:PFAM:PF02537" FT misc_feature complement(join(701255..701323,701342..701410, FT 701453..701521,701546..701605)) FT /gene="crcB" FT /locus_tag="ROD_06391" FT /note="4 probable transmembrane helices predicted for FT ROD06391 by TMHMM2.0 at aa 4-23, 32-54, 69-91 and 98-120" FT CDS 701704..702492 FT /transl_table=11 FT /locus_tag="ROD_06401" FT /product="putative carbon-nitrogen hydrolase" FT /db_xref="GOA:D2TMS0" FT /db_xref="InterPro:IPR001110" FT /db_xref="InterPro:IPR003010" FT /db_xref="UniProtKB/TrEMBL:D2TMS0" FT /protein_id="CBG87415.1" FT /translation="MFAAAGQFAVSPVWEKNAETCVTLMSQAAQKGVSLLVLPEALLAR FT DDDDPDLSVKSAQRLEGDFLKLLLRESASNTMTTILTIHVPSLPGRAVNTLLALRGGKI FT IASYAKLHLYDAFAIQESRNVDAGNAIAPLIEVGEFRVGLMTCYDLRFPELALAQALQG FT ADVLVLPAAWVRGALKEHHWATLLAARALDTTCYMVAAGECGNKNIGQSRIIDPFGVTL FT AAAAESPALIMTDISMERIRQVRAQLPVLRNRRFAPPQLL" FT misc_feature 701707..702219 FT /locus_tag="ROD_06401" FT /note="HMMPfam hit to PF00795, Nitrilase/cyanide hydratase FT and apolipoprotein N-acyltransferase, score 2.2e-25" FT /inference="protein motif:PFAM:PF00795" FT misc_feature 702130..702192 FT /note="PS01227 Uncharacterized protein family UPF0012 FT signature." FT /inference="protein motif:Prosite:PS01227" FT CDS 702620..702823 FT /transl_table=11 FT /gene="tatE" FT /locus_tag="ROD_06411" FT /product="Sec-independent protein translocase protein" FT /db_xref="GOA:D2TMS1" FT /db_xref="InterPro:IPR003369" FT /db_xref="InterPro:IPR006312" FT /db_xref="InterPro:IPR024905" FT /db_xref="UniProtKB/Swiss-Prot:D2TMS1" FT /protein_id="CBG87416.1" FT /translation="MGEISITKLLVIAALVVLLFGTKKLRTLGGDLGTAIKGFKKAMND FT DDATAKRDADSGIQAEKLSHKE" FT misc_feature 702629..702787 FT /gene="tatE" FT /locus_tag="ROD_06411" FT /note="HMMPfam hit to PF02416, Bacterial sec-independent FT translocation protein mttA/Hcf106, score 3e-09" FT /inference="protein motif:PFAM:PF02416" FT misc_feature 702629..702682 FT /gene="tatE" FT /locus_tag="ROD_06411" FT /note="1 probable transmembrane helix predicted for FT ROD06411 by TMHMM2.0 at aa 4-21" FT repeat_region 702871..702881 FT /note="11 bp direct repeat flanking ISCro6" FT repeat_region join(702882..704126,706833..707003) FT /note="Insertion sequence ISCro6. Flanked by 18 bp inverted FT repeats which contain 3 mismatches, and 11 bp direct FT repeats. 1 of 5 ISCro6 elements in CR chromosome, of which FT two are intact, two have been disrupted by ISCro1 FT insertion, and two have frameshift mutated transposases" FT /note="this copy has been disrupted by the insertion of FT ISCro1" FT repeat_region 702882..702899 FT /note="18 bp terminal inverted repeat of ISCro6, contains 3 FT mismatches" FT CDS join(702971..704125,706833..706991) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_06421" FT /product="ISCro6 transposase (pseudogene)" FT /note="pseudogene, disrupted by ISCro1 insertion" FT misc_feature 703355..704026 FT /locus_tag="ROD_06421" FT /note="HMMPfam hit to PF01609, Transposase, IS4-like, score FT 2.7e-20" FT /inference="protein motif:PFAM:PF01609" FT repeat_region complement(704119..704126) FT /note="8 bp direct repeat flanking ISCro1" FT repeat_region complement(704127..706825) FT /note="Insertion sequence ISCro1. 1 of 21 intact ISCro1 FT elements in CR chromosome, all have 30 bp inverted repeats FT which contain 12 mismatches, and are flanked by direct FT repeats of varying length. This element has 8 bp direct FT repeats" FT repeat_region 704127..704156 FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT CDS complement(704157..705728) FT /transl_table=11 FT /locus_tag="ROD_06431" FT /product="ISCro1 transposase C" FT /db_xref="InterPro:IPR004291" FT /db_xref="InterPro:IPR024463" FT /db_xref="InterPro:IPR024474" FT /db_xref="UniProtKB/TrEMBL:D2TGY4" FT /protein_id="CBG87418.1" FT /translation="MDTSLAHENARLRALLQTQQDTIRQMAEYNRLLSQRVAAYASEIN FT RLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETLGEQYDPALPSAL FT RQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIETQR FT PKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQSEIYRRQGVEL FT SRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYV FT RDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYESGRITEAA FT CMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSAEQRLAARKARAASLMQ FT SLYDWIQTQMKTLSRHSDTAKAFAYLLKQWDSLNVYCSNGWVEIDNNIAENALRGVAVG FT RKNWLFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWK FT VDLSSQ" FT misc_feature complement(704721..705317) FT /locus_tag="ROD_06431" FT /note="HMMPfam hit to PF03050, Transposase, IS66, score FT 4.4e-129" FT /inference="protein motif:PFAM:PF03050" FT CDS complement(705748..706095) FT /transl_table=11 FT /locus_tag="ROD_06441" FT /product="ISCro1 transposase B" FT /db_xref="InterPro:IPR008878" FT /db_xref="UniProtKB/TrEMBL:D2TGY5" FT /protein_id="CBG87419.1" FT /translation="MISLPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFI FT FRGRRGDQIKVLWADSDGLCLFTKRLERGRFIWPVTRDGKVHLTPAQLSMLLEGINWKH FT PKRTERAGIRI" FT misc_feature complement(705754..706080) FT /locus_tag="ROD_06441" FT /note="HMMPfam hit to PF05717, Transposase (putative), IS66 FT Orf2 like, score 5.7e-70" FT /inference="protein motif:PFAM:PF05717" FT CDS complement(706095..706772) FT /transl_table=11 FT /locus_tag="ROD_06451" FT /product="ISCro1 transposase A" FT /db_xref="GOA:D2TGY6" FT /db_xref="InterPro:IPR002514" FT /db_xref="UniProtKB/TrEMBL:D2TGY6" FT /protein_id="CBG87420.1" FT /translation="MSIIFSGHYRMEYRTWITEALRLHFEEHLPRVVAGRRLGVPKSTV FT CSMFVRFRRAGLSWPLPAGMSEQELDACLYGQFSTVPVVRPESTVISETPVVKKRPRRP FT NFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQYRKGGLLPSGKNMPALLP FT VTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRLKGKLTPALLQTLIREIKG FT SSH" FT misc_feature complement(706212..706466) FT /locus_tag="ROD_06451" FT /note="HMMPfam hit to PF01527, Transposase IS3/IS911, score FT 2e-22" FT /inference="protein motif:PFAM:PF01527" FT misc_feature complement(706623..706688) FT /note="Predicted helix-turn-helix motif with score FT 1051.000, SD 2.77 at aa 29-50, sequence FT LPRVVAGRRLGVPKSTVCSMFV" FT repeat_region complement(706796..706825) FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT repeat_region complement(706826..706833) FT /note="8 bp direct repeat flanking ISCro1" FT repeat_region complement(706986..707003) FT /note="18 bp terminal inverted repeat of ISCro6, contains 3 FT mismatches" FT repeat_region 707004..707014 FT /note="11 bp direct repeat flanking ISCro6" FT CDS complement(707056..708021) FT /transl_table=11 FT /gene="lipA" FT /locus_tag="ROD_06461" FT /product="lipoic acid synthetase" FT /EC_number="2.8.1.-" FT /db_xref="GOA:D2TNF2" FT /db_xref="InterPro:IPR003698" FT /db_xref="InterPro:IPR006638" FT /db_xref="InterPro:IPR007197" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:D2TNF2" FT /protein_id="CBG87421.1" FT /translation="MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKL FT PADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVA FT HGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPDI FT KIETLVPDFRGRMDRALEILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFK FT EAHPQIPTKSGLMVGLGETNAEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSP FT EEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK" FT misc_feature complement(707266..707760) FT /gene="lipA" FT /locus_tag="ROD_06461" FT /note="HMMPfam hit to PF04055, Radical SAM, score 8.8e-23" FT /inference="protein motif:PFAM:PF04055" FT CDS complement(708230..709267) FT /transl_table=11 FT /locus_tag="ROD_06471" FT /product="LysR-family transcriptional regulator" FT /db_xref="GOA:D2TNF3" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TNF3" FT /protein_id="CBG87422.1" FT /translation="MNNCGVNICNQQLQSPLLFINLMYWSASVSDKIKPKEYSYEHRPE FT DKPQVFRTLRNIDLNLLTIFEAVYVHKGIVNAAKILNLTPSAISQSIQKLRSIFPDPLF FT IRKGQGVTPTTYASHLHEYISQGLESILGALDLTGSYDKQRTITIGTTPSVGALVMPTI FT YQAIKTHHPQLLLRNIPVHDAETQLSQFQTDLIIDNHVYSNRVIQHQVLFSDNVELVCR FT QQHPSLAAALTAEKINAAEHSLLMVEGQSFTLLRQRIQEIFPERKISFSSYNIFTLASL FT IANSDLVGIMPARFFTLFNLCWPLQRLPHPQLNAEQIDYSLHFNKLSLRDPILESVITV FT IQDAF" FT misc_feature complement(708242..708850) FT /locus_tag="ROD_06471" FT /note="HMMPfam hit to PF03466, LysR, substrate-binding, FT score 2.3e-05" FT /inference="protein motif:PFAM:PF03466" FT misc_feature complement(708914..709093) FT /locus_tag="ROD_06471" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 2.8e-15" FT /inference="protein motif:PFAM:PF00126" FT misc_feature complement(708959..709051) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature complement(708989..709054) FT /note="Predicted helix-turn-helix motif with score FT 1490.000, SD 4.26 at aa 72-93, sequence FT KGIVNAAKILNLTPSAISQSIQ" FT CDS complement(709477..710118) FT /transl_table=11 FT /gene="lipB" FT /locus_tag="ROD_06481" FT /product="lipoyltransferase (lipoate-protein ligase B)" FT /EC_number="2.3.1.-" FT /db_xref="GOA:D2TNF4" FT /db_xref="InterPro:IPR000544" FT /db_xref="InterPro:IPR004143" FT /db_xref="InterPro:IPR020605" FT /db_xref="UniProtKB/TrEMBL:D2TNF4" FT /protein_id="CBG87423.1" FT /translation="MSQDKILVRQLGLQPYEPVSQAMHHFTDTRDENTADEIWLVEHYP FT VFTQGQAGKAEHILMPGDIPVIQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELVTL FT LEQTVVNTLAELDIDAHPRADAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDLSPF FT LRINPCGYAGMEMTKIAEWDNAATTENIRPRLLKNILALLNNPPCEYIPA" FT misc_feature complement(709723..709974) FT /gene="lipB" FT /locus_tag="ROD_06481" FT /note="HMMPfam hit to PF03099, Biotin/lipoate A/B protein FT ligase, score 8.8e-19" FT /inference="protein motif:PFAM:PF03099" FT misc_feature complement(709861..709908) FT /note="PS01313 Lipoate-protein ligase B signature." FT /inference="protein motif:Prosite:PS01313" FT CDS complement(710219..710482) FT /transl_table=11 FT /locus_tag="ROD_06491" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007454" FT /db_xref="UniProtKB/TrEMBL:D2TNF5" FT /protein_id="CBG87424.1" FT /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYSP FT TVKPSSKGNYHSVSITINATHIEQVETLYEELGNIDIVRMVL" FT misc_feature complement(710222..710482) FT /locus_tag="ROD_06491" FT /note="HMMPfam hit to PF04359, Protein of unknown function FT DUF493, score 3.6e-54" FT /inference="protein motif:PFAM:PF04359" FT CDS complement(710590..711801) FT /transl_table=11 FT /gene="dacA" FT /locus_tag="ROD_06501" FT /product="penicillin-binding protein 5 (D-alanyl-D-alanine FT carboxypeptidase)" FT /EC_number="3.4.16.4" FT /db_xref="GOA:D2TNF6" FT /db_xref="InterPro:IPR001967" FT /db_xref="InterPro:IPR012338" FT /db_xref="InterPro:IPR012907" FT /db_xref="InterPro:IPR015956" FT /db_xref="InterPro:IPR018044" FT /db_xref="UniProtKB/TrEMBL:D2TNF6" FT /protein_id="CBG87425.1" FT /translation="MKTTFSARFLQRMALTTALCTAALSGAHADDLNIKTMIPGVPQID FT AESYILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDA FT WATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMN FT SYVTALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSVYKEKEFTFNGI FT RQLNRNGLLWDNSLNVDGIKTGHTAKAGYNLVASATEGQMRLISAVMGGRTYKGRETES FT KKLLTWGFRFFETVNPLKAGKEFASEPAWFGDTDRASLGVDKDVYLTIPRGRMKDLKAS FT YLLNTTELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIVDYIKLMFH FT HWFG" FT misc_feature complement(710653..710928) FT /gene="dacA" FT /locus_tag="ROD_06501" FT /note="HMMPfam hit to PF07943, Peptidase S11, D-Ala-D-Ala FT carboxypeptidase A, C-terminal, score 1.1e-36" FT /inference="protein motif:PFAM:PF07943" FT misc_feature complement(710983..711699) FT /gene="dacA" FT /locus_tag="ROD_06501" FT /note="HMMPfam hit to PF00768, Peptidase S11, FT D-alanyl-D-alanine carboxypeptidase A, score 3.3e-153" FT /inference="protein motif:PFAM:PF00768" FT sig_peptide complement(711715..711801) FT /gene="dacA" FT /locus_tag="ROD_06501" FT /note="Signal peptide predicted for ROD06501 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.998 between residues 29 and 30" FT CDS complement(711952..713055) FT /transl_table=11 FT /gene="rlpA" FT /locus_tag="ROD_06511" FT /product="rare lipoprotein A" FT /db_xref="InterPro:IPR007730" FT /db_xref="InterPro:IPR009009" FT /db_xref="InterPro:IPR012997" FT /db_xref="UniProtKB/TrEMBL:D2TNF7" FT /protein_id="CBG87426.1" FT /translation="MRKQLPGVCVAAGIMLLAACTSDEGQQQPTQPPLPAVCNGPVVEI FT SGAEPRYEPLNATANQDYQRDGKSYRIVQDPSRFSQAGLAAIYDAEPGSNLTASGEMFD FT PMQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNN FT TKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPARPDLSGGMGSASPTPQPAQPQGDI FT RPISNATLKSEDSAGAPVNSSGFLGAPTTLAPGVLEGSEPTPAPQPPAAVPVTAPVSAP FT AATPAPVAASTSGGYVVQVGAVSDQGRAQQYQERLAQQFSVPGRVTQNGAVWRIQLGPF FT ASKAEASALQQRLQTEAQLQSFITGAQ" FT misc_feature complement(711961..712182) FT /gene="rlpA" FT /locus_tag="ROD_06511" FT /note="HMMPfam hit to PF05036, Sporulation/cell division FT region, bacteria, score 1.2e-19" FT /inference="protein motif:PFAM:PF05036" FT misc_feature complement(712546..712818) FT /gene="rlpA" FT /locus_tag="ROD_06511" FT /note="HMMPfam hit to PF03330, Rare lipoprotein A, score FT 8.5e-28" FT /inference="protein motif:PFAM:PF03330" FT sig_peptide complement(712981..713055) FT /gene="rlpA" FT /locus_tag="ROD_06511" FT /note="Signal peptide predicted for ROD06511 by SignalP 2.0 FT HMM (Signal peptide probability 0.989) with cleavage site FT probability 0.506 between residues 25 and 26" FT misc_feature complement(712996..713028) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(713066..714178) FT /transl_table=11 FT /gene="mrdB" FT /locus_tag="ROD_06521" FT /product="rod shape-determining protein RodA" FT /db_xref="GOA:D2TNF8" FT /db_xref="InterPro:IPR001182" FT /db_xref="InterPro:IPR011923" FT /db_xref="InterPro:IPR018365" FT /db_xref="UniProtKB/TrEMBL:D2TNF8" FT /protein_id="CBG87427.1" FT /translation="MTDNPDKKTFWDKIHIDPTMLLILLALLVYSSLVIWSASGQDIGM FT TERKVGQIAIGLVVMVVMAQIPPRVYEGWAPYLYVLCIILLVAVDAFGAISKGAQRWLD FT LGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDLGTS FT ILVALSGLFVLFLSGLSWRLIGVAALLLAAFIPILWFFLMHDYQRQRVMMLLDPETDPL FT GAGYHIIQSKIAIGSGGLSGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILVLL FT ALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVS FT YGGSALIVLMAGFGIVMSIHTHRKMLSKSV" FT misc_feature complement(713084..714127) FT /gene="mrdB" FT /locus_tag="ROD_06521" FT /note="HMMPfam hit to PF01098, Cell cycle protein, score FT 6.1e-181" FT /inference="protein motif:PFAM:PF01098" FT misc_feature complement(join(713099..713167,713195..713263, FT 713297..713365,713570..713638,713642..713701, FT 713714..713773,713882..713950,713978..714031, FT 714068..714136)) FT /gene="mrdB" FT /locus_tag="ROD_06521" FT /note="9 probable transmembrane helices predicted for FT ROD06521 by TMHMM2.0 at aa 15-37, 50-67, 77-99, 136-155, FT 160-179, 181-203, 272-294, 306-328 and 338-360" FT misc_feature complement(713144..713218) FT /note="PS00428 Cell cycle proteins ftsW / rodA / spoVE FT signature." FT /inference="protein motif:Prosite:PS00428" FT sig_peptide complement(714068..714178) FT /gene="mrdB" FT /locus_tag="ROD_06521" FT /note="Signal peptide predicted for ROD06521 by SignalP 2.0 FT HMM (Signal peptide probability 0.756) with cleavage site FT probability 0.413 between residues 37 and 38" FT CDS complement(714181..716082) FT /transl_table=11 FT /gene="mrdA" FT /locus_tag="ROD_06531" FT /product="penicillin-binding protein 2" FT /db_xref="GOA:D2TNF9" FT /db_xref="InterPro:IPR001460" FT /db_xref="InterPro:IPR005311" FT /db_xref="InterPro:IPR012338" FT /db_xref="InterPro:IPR017790" FT /db_xref="UniProtKB/TrEMBL:D2TNF9" FT /protein_id="CBG87428.1" FT /translation="MKRQNSFRDYTAESALFVRRALVAFSGILLLTGVLIANLYNLQIV FT RYTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQHTLDA FT LRSVVDLTDDDIAAFKKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKR FT RYYPYGSALTHVIGYVSKINDKDIERLDKEDKLANYAATHDIGKLGIERYYEEVLHGQT FT GYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTIDLKLQQYIETLLAGSRAAVIVTDPRTG FT GVLSLVSMPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSA FT LSAGVITRNTSLFDPGWWQLPGSEKRYRDWKKWGHGHLNVTKSLEESADTFFYQVAYDM FT GIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKMKRFKKPWYQGDTIPVGIGQGYW FT TATPIQMSKALMILINDGVVKVPHLLMSTAENGKQVPWVQPHEPPVGDIHSGYWELAKD FT GMYGVANRGNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTA FT FAPYNNPQVAVAMILENGGAGPAVGTIMRQILDHIMLGDNNTSLPAENPAVAAAEDQ" FT misc_feature complement(714256..715272) FT /gene="mrdA" FT /locus_tag="ROD_06531" FT /note="HMMPfam hit to PF00905, Penicillin-binding protein, FT transpeptidase, score 1.8e-101" FT /inference="protein motif:PFAM:PF00905" FT misc_feature complement(715363..715896) FT /gene="mrdA" FT /locus_tag="ROD_06531" FT /note="HMMPfam hit to PF03717, Penicillin-binding protein, FT dimerisation domain, score 9.9e-69" FT /inference="protein motif:PFAM:PF03717" FT misc_feature complement(715954..716022) FT /gene="mrdA" FT /locus_tag="ROD_06531" FT /note="1 probable transmembrane helix predicted for FT ROD06531 by TMHMM2.0 at aa 21-43" FT CDS complement(716112..716579) FT /transl_table=11 FT /locus_tag="ROD_06541" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TNG0" FT /db_xref="InterPro:IPR003742" FT /db_xref="InterPro:IPR016051" FT /db_xref="UniProtKB/TrEMBL:D2TNG0" FT /protein_id="CBG87429.1" FT /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGK FT NADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLACELERWKLDGRDVSLLIGG FT PEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE" FT misc_feature complement(716121..716579) FT /locus_tag="ROD_06541" FT /note="HMMPfam hit to PF02590, Protein of unknown function FT DUF163, score 2e-111" FT /inference="protein motif:PFAM:PF02590" FT CDS complement(716583..716900) FT /transl_table=11 FT /locus_tag="ROD_06551" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR004394" FT /db_xref="UniProtKB/TrEMBL:D2TNG1" FT /protein_id="CBG87430.1" FT /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSS FT RHVMSIADHVVQESRAAGMLPLGVEGESVADWIVVDLGEVIVHVMQEESRRLYELEKLW FT S" FT misc_feature complement(716586..716891) FT /locus_tag="ROD_06551" FT /note="HMMPfam hit to PF02410, Iojap-related protein, score FT 1.1e-53" FT /inference="protein motif:PFAM:PF02410" FT misc_feature complement(716808..716831) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(717160..717771) FT /transl_table=11 FT /gene="cobC" FT /locus_tag="ROD_06571" FT /product="alpha-ribazole phosphatase" FT /EC_number="3.1.3.73" FT /db_xref="GOA:D2TNG2" FT /db_xref="InterPro:IPR001345" FT /db_xref="InterPro:IPR013078" FT /db_xref="InterPro:IPR017578" FT /db_xref="UniProtKB/TrEMBL:D2TNG2" FT /protein_id="CBG87431.1" FT /translation="MRLWLVRHGETEANVAGLYSGHAPTPLTARGVAQAKTLNALLAQA FT PFEQVLCSELERAQNTARLLLAGREVPLRTCPDLNEMFFGDWEMRHHRDLCTEDASNYA FT AWCNDWQNAIPTNGEGFQAFSRRVERVIRQLADYQHHSHVLLVSHQGVLSLLVAKLLAM FT PDAAMWRFRIEQGCWSAIDFHDDFATLRVLNSRAVWQPGE" FT misc_feature complement(717304..717768) FT /gene="cobC" FT /locus_tag="ROD_06571" FT /note="HMMPfam hit to PF00300, Phosphoglycerate mutase, FT score 4.8e-46" FT /inference="protein motif:PFAM:PF00300" FT misc_feature complement(717730..717759) FT /note="PS00175 Phosphoglycerate mutase family FT phosphohistidine signature." FT /inference="protein motif:Prosite:PS00175" FT CDS 717868..718953 FT /transl_table=11 FT /gene="cobD" FT /locus_tag="ROD_06581" FT /product="Threonine-phosphate decarboxylase" FT /EC_number="4.1.1.81" FT /db_xref="GOA:D2TNG3" FT /db_xref="InterPro:IPR004838" FT /db_xref="InterPro:IPR004839" FT /db_xref="InterPro:IPR005860" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015422" FT /db_xref="InterPro:IPR015424" FT /db_xref="UniProtKB/TrEMBL:D2TNG3" FT /protein_id="CBG87432.1" FT /translation="MSLFKSAHGGNIREAAELLGISAGQLLDFSANINPLGMPASVKRA FT IVDNLQLAERYPDVEYRHLHQALARHHQVPVEWIVAGNGETEAIFALVDGLKPRRAMIV FT TPGFAEYRRALEWSGCLINTFALREEDGWQLTEAILDALSAELDCLFLCTPNNPTGLLP FT ERSLLAAIALRCRELNIALILDEAFIDFIVGEPGFIPVLQDNPHIWVLRSLTKFYAIPG FT LRLGYLVNSDEQAMARIRARQMPWSINAFAALAGETILEERAYQQATWQWLQEEGERFY FT QRLKALPGLTVYPGRANYLLLKCDIDLQRALLERHILIRSCANYPGLDGRYFRVAIRSV FT EENSRLLAALTDALSDTDRAG" FT misc_feature 717937..718917 FT /gene="cobD" FT /locus_tag="ROD_06581" FT /note="HMMPfam hit to PF00155, Aminotransferase, class I FT and II, score 2.4e-37" FT /inference="protein motif:PFAM:PF00155" FT misc_feature 718504..718545 FT /note="PS00105 Aminotransferases class-I FT pyridoxal-phosphate attachment site." FT /inference="protein motif:Prosite:PS00105" FT CDS complement(718928..719569) FT /transl_table=11 FT /gene="nadD" FT /locus_tag="ROD_06591" FT /product="nicotinate-nucleotide adenylyltransferase" FT /EC_number="2.7.7.18" FT /db_xref="GOA:D2TNG4" FT /db_xref="InterPro:IPR004820" FT /db_xref="InterPro:IPR004821" FT /db_xref="InterPro:IPR005248" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:D2TNG4" FT /protein_id="CBG87433.1" FT /translation="MKSLQALFGGTFDPVHYGHLKPVETLANLIGLSRVIMMPNNVPPH FT RPQPEATSAQRKTMLELAIADKPLFTLDERELQRDTPSYTAQTLKEWREEQGPDAPLGF FT IIGQDSLLTFPSWHDYETILDNTHLIVCRRPGYPLEMAQEQHQRWLEAHLTHTPDDLHH FT LPAGKIYLAETPWFNISATIVRERLEKGESCGDLMPEAVLDYINQHGLYR" FT misc_feature complement(719009..719551) FT /gene="nadD" FT /locus_tag="ROD_06591" FT /note="HMMPfam hit to PF01467, Cytidylyltransferase, score FT 1.7e-61" FT /inference="protein motif:PFAM:PF01467" FT CDS complement(719571..720602) FT /transl_table=11 FT /gene="holA" FT /locus_tag="ROD_06601" FT /product="DNA polymerase III, delta subunit" FT /db_xref="GOA:D2TNG5" FT /db_xref="InterPro:IPR005790" FT /db_xref="InterPro:IPR008921" FT /db_xref="InterPro:IPR010372" FT /db_xref="UniProtKB/TrEMBL:D2TNG5" FT /protein_id="CBG87434.1" FT /translation="MIRLYPEQLRAQLSEGLRAAYLLLGNDPLLLQESQDAIRQAAAAQ FT GFEEHHMFTLDNSTDWNALFSQCQAMSLFASRQTLLLLLPENGPNAAINEQLATLTQLL FT HDDLLLIVRGNKLTKAQENAAWISALADRSVLVSCQTPEHAQLPRWVAARAKQKNLQLD FT DAANQLLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPYHWVDALV FT MGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRTLFDKHRVWQN FT RRGMLGEALNRLSPAQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLICHKALADVF FT IDG" FT misc_feature complement(719616..720542) FT /gene="holA" FT /locus_tag="ROD_06601" FT /note="HMMPfam hit to PF06144, DNA polymerase III, delta, FT score 2.9e-131" FT /inference="protein motif:PFAM:PF06144" FT CDS complement(720602..721201) FT /transl_table=11 FT /gene="rlpB" FT /locus_tag="ROD_06611" FT /product="rare lipoprotein B" FT /db_xref="GOA:D2TNG6" FT /db_xref="InterPro:IPR007485" FT /db_xref="UniProtKB/TrEMBL:D2TNG6" FT /protein_id="CBG87435.1" FT /translation="MRYLATVLLSLAVLTTAGCGWHLRSTTQVPDTMKTMILDTSDPNG FT PLSRAVRNQLRLNDIQLLDKTTLRKDVPSLRLGRVSVSKDTASVFQNGQTAEYQMIMSV FT SATVLIPGHDIYPINVKVFRSFFDNPQMALAKDNEQDMIIKEMYDRAAEQLIRKLPSVH FT AADLRSSQQDVSVADEADAAAAPASSSSRVSTTLGN" FT misc_feature complement(720707..721147) FT /gene="rlpB" FT /locus_tag="ROD_06611" FT /note="HMMPfam hit to PF04390, Rare lipoprotein B, score FT 3.2e-77" FT /inference="protein motif:PFAM:PF04390" FT sig_peptide complement(721121..721201) FT /gene="rlpB" FT /locus_tag="ROD_06611" FT /note="Signal peptide predicted for ROD06611 by SignalP 2.0 FT HMM (Signal peptide probability 0.732) with cleavage site FT probability 0.201 between residues 27 and 28" FT misc_feature complement(721145..721177) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(721216..723798) FT /transl_table=11 FT /gene="leuS" FT /locus_tag="ROD_06621" FT /product="leucyl-tRNA synthetase" FT /db_xref="GOA:D2TNG7" FT /db_xref="InterPro:IPR001412" FT /db_xref="InterPro:IPR002300" FT /db_xref="InterPro:IPR002302" FT /db_xref="InterPro:IPR009008" FT /db_xref="InterPro:IPR009080" FT /db_xref="InterPro:IPR013155" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:D2TNG7" FT /protein_id="CBG87436.1" FT /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPS FT GRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDN FT IAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQ FT TVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRN FT WIGRSEGVEITFDVTGYDNTLTVYTTRPDTFMGATYLAVAAGHPLAQKAAANNPELAAF FT IDECRNTKVAEADMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPG FT HDQRDYEFATKYGLTIKPVILAADGSEPDLSEQALTEKGVLFNSGEFDGLAFEEAFNAI FT ADKLAAKGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVQPTPEDQLPVILPEDV FT VMDGITSPIKADPEWAKTTVNGQPALRETDTFDTFMESSWYYARYTCPQYQEGMLDAKA FT ANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYY FT VGENGERNWVSPKEAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQEMVE FT RYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTSRGDVAPLNVDAL FT SEDQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPQEDEQDRALMQEA FT LLAIVRMLNPFTPHICFTLWQSLKGEGDIDNAPWPVADDAAMVEDSTLVVVQVNGKVRG FT KITVPVDASEEQVRERAGQEHLVAKYLEGMTVRKVIYVPGKLLNLVVG" FT misc_feature complement(721315..721560) FT /gene="leuS" FT /locus_tag="ROD_06621" FT /note="HMMPfam hit to PF08264, Valyl/Leucyl/Isoleucyl-tRNA FT synthetase, class I, anticodon-binding, score 1.8e-07" FT /inference="protein motif:PFAM:PF08264" FT misc_feature complement(721828..723762) FT /gene="leuS" FT /locus_tag="ROD_06621" FT /note="HMMPfam hit to PF00133, Aminoacyl-tRNA synthetase, FT class Ia, score 1.3e-13" FT /inference="protein motif:PFAM:PF00133" FT misc_feature complement(723640..723675) FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT /inference="protein motif:Prosite:PS00178" FT CDS 724034..724516 FT /transl_table=11 FT /locus_tag="ROD_06631" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR009912" FT /db_xref="UniProtKB/TrEMBL:D2TNG8" FT /protein_id="CBG87437.1" FT /translation="MNKVAQYYRELVASLSERLRNGERDIDALVEQARQRVLQTGELTR FT TEVDELIRAVRRDLEEFAMSYEESLEEESDSVFMRVIKESLWQELADITDKTQLEWREV FT FQDLSHHGVYHSGEVVGLGNLVCEKCHYHQAVYTPDVLPRCPKCGHDQFQRRPFEP" FT misc_feature 724064..724513 FT /locus_tag="ROD_06631" FT /note="HMMPfam hit to PF07295, Protein of unknown function FT DUF1451, score 9.8e-103" FT /inference="protein motif:PFAM:PF07295" FT CDS complement(join(724672..724863,724867..725604)) FT /pseudo FT /transl_table=11 FT /gene="rihA" FT /locus_tag="ROD_06641" FT /product="pyrimidine-specific ribonucleoside hydrolase FT (pseudogene)" FT /EC_number="3.2.-.-" FT /note="pseudogene, truncated by premature stop codon" FT misc_feature complement(join(724672..724863,724867..725601)) FT /gene="rihA" FT /locus_tag="ROD_06641" FT /note="HMMPfam hit to PF01156, Inosine/uridine-preferring FT nucleoside hydrolase, score 2e-180" FT /inference="protein motif:PFAM:PF01156" FT CDS complement(725722..726447) FT /transl_table=11 FT /gene="gltL" FT /locus_tag="ROD_06651" FT /product="glutamate/aspartate ABC transporter, ATP-binding FT protein" FT /db_xref="GOA:D2TNG9" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TNG9" FT /protein_id="CBG87439.1" FT /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIK FT TVNGLEPVQKGEITVDGIMVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQIK FT VLKRDKAPAREKAQKLLERVGLAAHANKYPAQLSGGQQQRVAIARALCMDPIAMLFDEP FT TSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDSPKEA FT FFANPQSERAKDFLAKILH" FT misc_feature complement(725812..726369) FT /gene="gltL" FT /locus_tag="ROD_06651" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 1.1e-67" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(725995..726039) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(726325..726348) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(726447..727121) FT /transl_table=11 FT /gene="gltK" FT /locus_tag="ROD_06661" FT /product="glutamate/aspartate ABC transporter, permease FT protein" FT /db_xref="GOA:D2TNH0" FT /db_xref="InterPro:IPR000515" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:D2TNH0" FT /protein_id="CBG87440.1" FT /translation="MYEFDWSSIVPSLPYLLDGLLITLKITLTAVVVGIVWGTILAVMR FT LSSFAPVAWFAKVYVNVFRSIPLVMVLLWFYLIVPGLLQDVLGLSPKTDIRLISAMVAF FT SMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLVILPQAFRAMVPLLLTQGI FT VLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGAVYFVISLSASLLVSYLKKR FT TV" FT misc_feature complement(726450..727076) FT /gene="gltK" FT /locus_tag="ROD_06661" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 4.3e-32" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(join(726465..726533,726591..726659, FT 726786..726839,726882..726950,727011..727079)) FT /gene="gltK" FT /locus_tag="ROD_06661" FT /note="5 probable transmembrane helices predicted for FT ROD06661 by TMHMM2.0 at aa 15-37, 58-80, 95-112, 155-177 FT and 197-219" FT CDS complement(727121..727861) FT /transl_table=11 FT /gene="gltJ" FT /locus_tag="ROD_06671" FT /product="glutamate/aspartate ABC transporter, permease FT protein" FT /db_xref="GOA:D2TNH1" FT /db_xref="InterPro:IPR000515" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:D2TNH1" FT /protein_id="CBG87441.1" FT /translation="MSIDWNWGIFLQQAPFGNTTYLGWLWNGFQVTVALSITAWIIAFL FT VGSLFGILRTVPNRFLSGIGTLYVELFRNVPLIVQFFTWYLVVPELLPEDLGMWFKAEL FT DPNIQFFLSSMICLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVLLPN FT AYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLI FT NAVIMLVMTLVERKVRLPGNMGGK" FT misc_feature complement(727145..727789) FT /gene="gltJ" FT /locus_tag="ROD_06671" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 1.2e-39" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(join(727163..727231,727274..727327, FT 727481..727540,727598..727666,727703..727771)) FT /gene="gltJ" FT /locus_tag="ROD_06671" FT /note="5 probable transmembrane helices predicted for FT ROD06671 by TMHMM2.0 at aa 31-53, 66-88, 108-127, 179-196 FT and 211-233" FT misc_feature complement(727382..727447) FT /note="Predicted helix-turn-helix motif with score FT 1078.000, SD 2.86 at aa 139-160, sequence FT RGQKNAALAMGLTLPQAYRYVL" FT misc_RNA complement(727865..728028) FT /note="Rfam:RF00369;sroC;Score=141.70;positions 1 to 59" FT CDS complement(728024..728932) FT /transl_table=11 FT /gene="gltI" FT /locus_tag="ROD_06681" FT /product="glutamate/aspartate ABC transporter, FT substrate-binding protein" FT /db_xref="GOA:D2TNH2" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:D2TNH2" FT /protein_id="CBG87442.1" FT /translation="MQLRKLATAMLVMGMSAGLAHAEDAAPAAGSTLDKIAKNGVIVVG FT HRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQN FT GTFDFECGSTTNNVERQKQAAFSNTIFVVGTRLLAKKGGDIKDFADLKGKAVVVTSGTT FT SEILLHKLNDEQKMDMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNW FT EIVGKPQSEEAYGCMLRKNDPEFKKLMDETIAQAQTSGEAAKWFDKWFKNPIPPKNLNM FT NFELSDEMKALFKEPNDKALN" FT misc_feature complement(728117..728809) FT /gene="gltI" FT /locus_tag="ROD_06681" FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding protein, family 3, score 1.4e-55" FT /inference="protein motif:PFAM:PF00497" FT sig_peptide complement(728867..728932) FT /gene="gltI" FT /locus_tag="ROD_06681" FT /note="Signal peptide predicted for ROD06681 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.998 between residues 22 and 23" FT CDS complement(729317..730855) FT /transl_table=11 FT /gene="lnt" FT /locus_tag="ROD_06691" FT /product="apolipoprotein N-acyltransferase" FT /EC_number="2.3.1.-" FT /db_xref="GOA:D2TNH3" FT /db_xref="InterPro:IPR003010" FT /db_xref="InterPro:IPR004563" FT /db_xref="UniProtKB/TrEMBL:D2TNH3" FT /protein_id="CBG87443.1" FT /translation="MAFAPLIERQRIRLLLALLFGACGTLAFSPYDIWPAAIVSLMGLQ FT ALTLNRRPLQSAAVGYFWGLGLFGSGINWVYVSIAQFGGMPGPVNVFLVVLLAAYLSLY FT TGLFAGILARLWPETHWLRVAIAAPVVWQITEFLRGWVLTGFPWLQFGYSQIDGPLKGL FT APVMGVEAINFLLMMVSGLLALALVQRNWRPLIAALLLFALPFPLRYIQWFTPQPQRAT FT QVSLVQGDIPQSLKWDESQLVNTLKIYLDATQPLMGKSQLIIWPESAIPDLEINQQRFL FT GMMDDLLRGKNSTLITGIVDARLNKQNRYDTFNTIITLGKDTPYSYNSTNRYNKNHLVP FT FGEFVPLESILRPLAPFFDLPMSSFSRGPYVQPQLHAHGFALTAAICYEIILGEQVRDN FT FRPDTDFLLTISNDAWFGKSIGPWQHFQMARMRSLELARPLLRSTNNGITAVIGPQGEI FT EAMLPQFTRQVLTTTVTPTSGLTPYARTGNWPLWIITALAGFAALLMSLRQRRK" FT misc_feature complement(join(729335..729391,730217..730273, FT 730292..730360,730517..730585,730619..730687, FT 730754..730822)) FT /gene="lnt" FT /locus_tag="ROD_06691" FT /note="6 probable transmembrane helices predicted for FT ROD06691 by TMHMM2.0 at aa 12-34, 57-79, 91-113, 166-188, FT 195-213 and 489-507" FT misc_feature complement(729620..730189) FT /gene="lnt" FT /locus_tag="ROD_06691" FT /note="HMMPfam hit to PF00795, Nitrilase/cyanide hydratase FT and apolipoprotein N-acyltransferase, score 1.9e-45" FT /inference="protein motif:PFAM:PF00795" FT sig_peptide complement(730775..730855) FT /gene="lnt" FT /locus_tag="ROD_06691" FT /note="Signal peptide predicted for ROD06691 by SignalP 2.0 FT HMM (Signal peptide probability 0.819) with cleavage site FT probability 0.814 between residues 27 and 28" FT CDS complement(730878..731756) FT /transl_table=11 FT /gene="corC" FT /locus_tag="ROD_06701" FT /product="magnesium and cobalt efflux protein" FT /db_xref="GOA:D2TNH4" FT /db_xref="InterPro:IPR000644" FT /db_xref="InterPro:IPR005170" FT /db_xref="InterPro:IPR016169" FT /db_xref="UniProtKB/TrEMBL:D2TNH4" FT /protein_id="CBG87444.1" FT /translation="MSDDNSHSSDTLSNKKGFFSLLLSQLFHGEPKNRDELLALIRDSG FT QNELIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFP FT VISEDKDHIEGILMAKDLLPFMRSDAEAFSMEKVLRQAVVVPESKRVDRMLKEFRSQRY FT HMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTIRALAPIED FT FNEAFGTSFSDEEVDTIGGLVMQAFGHLPARGETIEIEGYQFKVAMADSRRIIQVHVRI FT PDDSPQPKLDE" FT misc_feature complement(730908..731144) FT /gene="corC" FT /locus_tag="ROD_06701" FT /note="HMMPfam hit to PF03471, Transporter-associated FT region, score 2.3e-30" FT /inference="protein motif:PFAM:PF03471" FT misc_feature complement(731190..731540) FT /gene="corC" FT /locus_tag="ROD_06701" FT /note="HMMPfam hit to PF00571, Cystathionine beta-synthase, FT core, score 6.1e-29" FT /inference="protein motif:PFAM:PF00571" FT CDS complement(731916..732383) FT /transl_table=11 FT /locus_tag="ROD_06711" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TNH5" FT /db_xref="InterPro:IPR002036" FT /db_xref="InterPro:IPR020549" FT /db_xref="InterPro:IPR023091" FT /db_xref="UniProtKB/TrEMBL:D2TNH5" FT /protein_id="CBG87445.1" FT /translation="MSQVILDLQLACENNAGLPEEARFQTWLNAAIPQFQEEAEVTIRL FT VDEAESHDLNLTYRGKDKPTNVLSFPFEAPPGIEMPLLGDLIICRQVVEQEAREQGKPL FT EAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAEKE" FT misc_feature complement(731973..732248) FT /locus_tag="ROD_06711" FT /note="HMMPfam hit to PF02130, Protein of unknown function FT UPF0054, score 8.8e-55" FT /inference="protein motif:PFAM:PF02130" FT misc_feature complement(732012..732044) FT /note="PS01306 Uncharacterized protein family UPF0054 FT signature." FT /inference="protein motif:Prosite:PS01306" FT CDS complement(732380..733444) FT /transl_table=11 FT /locus_tag="ROD_06721" FT /product="PhoH-like protein" FT /db_xref="GOA:D2TNH6" FT /db_xref="InterPro:IPR003714" FT /db_xref="UniProtKB/TrEMBL:D2TNH6" FT /protein_id="CBG87446.1" FT /translation="MHMRNSLNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLGIE FT INRRDNHFKLTGRPICVTAAADILRTLYVDTAPMRGQIQDIEPEQIHLAIKEARVLEQS FT AESVPEYGKAVNIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAV FT DALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLI FT ERNVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQID FT LPRNTKSGLRHAIEVLADVEEISFNFFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAAL FT AAERKREAQEQEQK" FT misc_feature complement(732464..733078) FT /locus_tag="ROD_06721" FT /note="HMMPfam hit to PF02562, PhoH-like protein, score FT 2.3e-154" FT /inference="protein motif:PFAM:PF02562" FT misc_feature complement(732980..733003) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(733466..733573) FT /transl_table=11 FT /locus_tag="ROD_06731" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TNH7" FT /protein_id="CBG87447.1" FT /translation="MKYDGVDLVILLVAPISTAMLAPLSAGVNNFLISR" FT misc_feature complement(733478..733546) FT /locus_tag="ROD_06731" FT /note="1 probable transmembrane helix predicted for FT ROD06731 by TMHMM2.0 at aa 10-32" FT sig_peptide complement(733496..733573) FT /locus_tag="ROD_06731" FT /note="Signal peptide predicted for ROD06731 by SignalP 2.0 FT HMM (Signal peptide probability 0.629) with cleavage site FT probability 0.524 between residues 26 and 27" FT CDS complement(733779..735203) FT /transl_table=11 FT /gene="miaB" FT /locus_tag="ROD_06741" FT /product="isopentenyl-adenosine A37 tRNA methylthiolase" FT /db_xref="GOA:D2TNH8" FT /db_xref="InterPro:IPR002792" FT /db_xref="InterPro:IPR005839" FT /db_xref="InterPro:IPR006463" FT /db_xref="InterPro:IPR006638" FT /db_xref="InterPro:IPR007197" FT /db_xref="InterPro:IPR013848" FT /db_xref="InterPro:IPR020612" FT /db_xref="InterPro:IPR023404" FT /db_xref="InterPro:IPR023970" FT /db_xref="UniProtKB/TrEMBL:D2TNH8" FT /protein_id="CBG87448.1" FT /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLL FT LNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFG FT PQTLHRLPEMINSVRGNRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTY FT CVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLL FT RLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTH FT TALEYKAIIRKLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSA FT RPGTPAADMVDDVPEEEKKQRLYILQDRINQQAMAWSRRMLGTIQRILVEGTSRKSIME FT LSGRTENNRVVNFEGSPEMIGKFVDVEITDVWTNSLRGKVVRTEDEMGLRIAETPESVI FT ARTRKENDLGVGFYQP" FT misc_feature complement(733881..734072) FT /gene="miaB" FT /locus_tag="ROD_06741" FT /note="HMMPfam hit to PF01938, Deoxyribonuclease/rho FT motif-related TRAM, score 2.7e-24" FT /inference="protein motif:PFAM:PF01938" FT misc_feature complement(734229..734753) FT /gene="miaB" FT /locus_tag="ROD_06741" FT /note="HMMPfam hit to PF04055, Radical SAM, score 7.6e-33" FT /inference="protein motif:PFAM:PF04055" FT misc_feature complement(734691..734753) FT /note="PS01278 Uncharacterized protein family UPF0004 FT signature." FT /inference="protein motif:Prosite:PS01278" FT misc_feature complement(734892..735194) FT /gene="miaB" FT /locus_tag="ROD_06741" FT /note="HMMPfam hit to PF00919, Protein of unknown function FT UPF0004, N-terminal, score 6.6e-51" FT /inference="protein motif:PFAM:PF00919" FT CDS 735349..736524 FT /transl_table=11 FT /gene="ubiF" FT /locus_tag="ROD_06751" FT /product="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol FT hydroxylase" FT /EC_number="1.14.13.-" FT /db_xref="GOA:D2TNH9" FT /db_xref="InterPro:IPR002938" FT /db_xref="InterPro:IPR003042" FT /db_xref="InterPro:IPR010971" FT /db_xref="InterPro:IPR018168" FT /db_xref="UniProtKB/TrEMBL:D2TNH9" FT /protein_id="CBG87449.1" FT /translation="MTNQPTEVAIVGGGMVGGALALGLAQHGFAVTVIEHAAPAPFVAG FT SQPDVRISAISAASVSLLKELGVWDAVQGMRSHPYRRLETWEWESAHVAFDAAELKLPL FT LGYMVENSVLQQALWQALAAHPNVTLREPASLMALHRHHDGYELELADGERLAAKLVVG FT ADGANSRVRQMAGIGIHAWHYAQSCMLITVRCENAPGDSTWQQFTPDGPRAFLPLFDNW FT ASLVWYDSPGRIRQLQALSMSQLKAEIARHFPTRLGPVTPVAAGAFPLTRRHALQYVQP FT GLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEPWASQPVLKRYQMRRMA FT DNFIMQSGMDLFYAGFSNNLPPLRMMRNLGLMAAARAGVLKRQALKYALGL" FT misc_feature 735367..735468 FT /gene="ubiF" FT /locus_tag="ROD_06751" FT /note="HMMPfam hit to PF01266, FAD dependent FT oxidoreductase, score 5.6e-07" FT /inference="protein motif:PFAM:PF01266" FT misc_feature 735367..735435 FT /gene="ubiF" FT /locus_tag="ROD_06751" FT /note="1 probable transmembrane helix predicted for FT ROD06751 by TMHMM2.0 at aa 7-29" FT misc_feature 736228..736269 FT /note="PS01304 ubiH/COQ6 monooxygenase family signature." FT /inference="protein motif:Prosite:PS01304" FT tRNA complement(736650..736721) FT /locus_tag="ROD_t07" FT /product="transfer RNA-Gln" FT /anticodon=(pos:736687..736689,aa:Gln) FT /note="tRNA Gln anticodon CTG, Cove score 56.82" FT tRNA complement(736823..736894) FT /locus_tag="ROD_t08" FT /product="transfer RNA-Gln" FT /anticodon=(pos:736860..736862,aa:Gln) FT /note="tRNA Gln anticodon CTG, Cove score 56.82" FT tRNA complement(737013..737086) FT /locus_tag="ROD_t09" FT /product="transfer RNA-Met" FT /anticodon=(pos:737050..737052,aa:Met) FT /note="tRNA Met anticodon CAT, Cove score 80.41" FT tRNA complement(737105..737176) FT /locus_tag="ROD_t10" FT /product="transfer RNA-Gln" FT /anticodon=(pos:737142..737144,aa:Gln) FT /note="tRNA Gln anticodon TTG, Cove score 54.87" FT tRNA complement(737214..737285) FT /locus_tag="ROD_t11" FT /product="transfer RNA-Gln" FT /anticodon=(pos:737251..737253,aa:Gln) FT /note="tRNA Gln anticodon TTG, Cove score 54.87" FT tRNA complement(737343..737424) FT /locus_tag="ROD_t12" FT /product="transfer RNA-Leu" FT /anticodon=(pos:737388..737390,aa:Leu) FT /note="tRNA Leu anticodon TAG, Cove score 46.62" FT tRNA complement(737436..737509) FT /locus_tag="ROD_t13" FT /product="transfer RNA-Met" FT /anticodon=(pos:737473..737475,aa:Met) FT /note="tRNA Met anticodon CAT, Cove score 80.41" FT CDS complement(737731..739395) FT /transl_table=11 FT /gene="asnB" FT /locus_tag="ROD_06761" FT /product="asparagine synthetase B [glutamine-hydrolyzing]" FT /EC_number="6.3.5.4" FT /db_xref="GOA:D2TNI0" FT /db_xref="InterPro:IPR001962" FT /db_xref="InterPro:IPR006426" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR017932" FT /db_xref="UniProtKB/TrEMBL:D2TNI0" FT /protein_id="CBG87450.1" FT /translation="MCSIFGVFDIKSDAGELRKKALELSRLMRHRGPDWSGIFACDKAI FT LAHERLSIVDVNAGAQPLYNEKKTHVLAVNGEIYNHQALRAEYGDRYAFQTGSDCEVIL FT ALYQEKGAEFLDDLQGMFAFALYDTEKDAWLIGRDHLGIIPLYMGYDEHGNLYVASEMK FT ALVPVCRTVKEFPAGSYLWSQDGEIRHYYQRDWFDYDAVKDNVTDKAELRQALEDAVKS FT HLMSDVPYGVLLSGGLDSSVISAITKKFAARRVEDQERSEAWWPQLHSFAVGLAGSPDL FT KAAQEVADHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAM FT GIKMVLSGEGSDEVFGGYLYFHKAPDAKELHEETVRKLQALHMFDCARANKAMSAWGVE FT ARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFESYLPASVAWRQKEQFSDGVG FT YSWIDTLKEVAAKQVSDQQLETASFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG FT GPSVACSSAKAIEWDEAFKTMNDPSGRAVGVHQSAYK" FT misc_feature complement(738046..738765) FT /gene="asnB" FT /locus_tag="ROD_06761" FT /note="HMMPfam hit to PF00733, Asparagine synthase, score FT 2e-111" FT /inference="protein motif:PFAM:PF00733" FT misc_feature complement(738910..739269) FT /gene="asnB" FT /locus_tag="ROD_06761" FT /note="HMMPfam hit to PF00310, Glutamine amidotransferase, FT class-II, score 6.3e-27" FT /inference="protein motif:PFAM:PF00310" FT misc_feature complement(739378..739395) FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT /inference="protein motif:Prosite:PS00443" FT CDS complement(739649..740401) FT /transl_table=11 FT /gene="nagD" FT /locus_tag="ROD_06771" FT /product="putative N-acetylglucosamine metabolism protein" FT /db_xref="GOA:D2TNI1" FT /db_xref="InterPro:IPR005834" FT /db_xref="InterPro:IPR006357" FT /db_xref="InterPro:IPR023214" FT /db_xref="InterPro:IPR023215" FT /db_xref="UniProtKB/TrEMBL:D2TNI1" FT /protein_id="CBG87451.1" FT /translation="MTIKNVICDIDGVLMHDNVAVPGAAEFLTGILEKGLPLVLLTNYP FT SQTGQDLANRFATAGVNVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGF FT TITDVNPDFVIVGETRSYNWDMMHKASYFVANGARFIATNPDTHGRGFYPACGALCAGI FT EKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLS FT GVSTLDDIDSMPFRPSWIYPSVAEIDVI" FT misc_feature complement(739733..740395) FT /gene="nagD" FT /locus_tag="ROD_06771" FT /note="HMMPfam hit to PF00702, Haloacid dehalogenase-like FT hydrolase, score 1.5e-17" FT /inference="protein motif:PFAM:PF00702" FT CDS complement(740447..741667) FT /transl_table=11 FT /gene="nagC" FT /locus_tag="ROD_06781" FT /product="N-acetylglucosamine repressor" FT /db_xref="GOA:D2TNI2" FT /db_xref="InterPro:IPR000600" FT /db_xref="InterPro:IPR000835" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TNI2" FT /protein_id="CBG87452.1" FT /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQHGPISRIQIAEQSQLA FT PASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRGFHAVGVRLGRHDATITLFD FT LSSKVLAEEHYPLPERTQETLEHALLNAISTFIDSYQRKIRELIAISVILPGLVDPESG FT MIHYMPHIQVENWGLVEALEQRFRVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHR FT GTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNL FT LKQGYQSRVSLDDCNIKAICKAANKGDSLASEVIEHVGRHLGKTIAIAINLFNPQKIVI FT AGEITEADKVLLPAIESCINTQALKAFRQNLPVVRSTLDHRSAIGAFALVKRAMLNGIL FT LQHLLEN" FT misc_feature complement(740846..741400) FT /gene="nagC" FT /locus_tag="ROD_06781" FT /note="HMMPfam hit to PF00480, ROK, score 4.4e-90" FT /inference="protein motif:PFAM:PF00480" FT misc_feature complement(740927..741010) FT /note="PS01125 ROK family signature." FT /inference="protein motif:Prosite:PS01125" FT misc_feature complement(741479..741595) FT /gene="nagC" FT /locus_tag="ROD_06781" FT /note="HMMPfam hit to PF01047, Bacterial regulatory FT protein, MarR, score 2.5e-07" FT /inference="protein motif:PFAM:PF01047" FT misc_feature complement(741506..741571) FT /note="Predicted helix-turn-helix motif with score FT 1021.000, SD 2.66 at aa 33-54, sequence FT ISRIQIAEQSQLAPASVTKITR" FT CDS complement(741676..742824) FT /transl_table=11 FT /gene="nagA" FT /locus_tag="ROD_06791" FT /product="N-acetylglucosamine-6-phosphate deacetylase" FT /EC_number="3.5.1.25" FT /db_xref="GOA:D2TNI3" FT /db_xref="InterPro:IPR003764" FT /db_xref="InterPro:IPR006680" FT /db_xref="InterPro:IPR011059" FT /db_xref="UniProtKB/TrEMBL:D2TNI3" FT /protein_id="CBG87453.1" FT /translation="MYALTQGRIFTGYEILDDHAIVVANGLIDSVCPVAELPQGIEQRS FT LNGAILSPGFIDVQLNGCGGVQFNDTAEAVTVETLEIMQKANEKSGCTSYLPTLITTSD FT DLMKQGVQVMREYLTKHPHQAQGLHLEGPWLNLVKKGTHNPAFVRQPDAALVDFLCDNA FT DVIAKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLFNAMP FT YITGREPGLAGAILDEADIYCGVIADGLHVDYANIRNAKRLKGDKLCLVTDATAPAGAN FT MEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRMATLYPA FT RAIGVDKQLGSIAPGKVANLTAFTHDFKIIKTIVNGNEVVTE" FT misc_feature complement(741733..742677) FT /gene="nagA" FT /locus_tag="ROD_06791" FT /note="HMMPfam hit to PF01979, Amidohydrolase 1, score FT 5.4e-54" FT /inference="protein motif:PFAM:PF01979" FT CDS complement(742884..743684) FT /transl_table=11 FT /gene="nagB" FT /locus_tag="ROD_06801" FT /product="glucosamine-6-phosphate isomerase" FT /EC_number="3.5.99.6" FT /db_xref="GOA:D2TNI4" FT /db_xref="InterPro:IPR004547" FT /db_xref="InterPro:IPR006148" FT /db_xref="InterPro:IPR018321" FT /db_xref="UniProtKB/TrEMBL:D2TNI4" FT /protein_id="CBG87454.1" FT /translation="MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTP FT LTAYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYHSFMHRNFFDHVDIPAENI FT NLLNGNAADIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLT FT HDTRVANSRFFDGDVDQVPKYALTVGVGTLLDAEEVMILVLGHQKAQALQAAVEGNVNH FT MWTISCLQLHPKAVVVCDEPSTMELKVKTLKYFNELEAENIKGL" FT misc_feature complement(742935..743642) FT /gene="nagB" FT /locus_tag="ROD_06801" FT /note="HMMPfam hit to PF01182, FT Glucosamine/galactosamine-6-phosphate isomerase, score FT 4.7e-194" FT /inference="protein motif:PFAM:PF01182" FT misc_feature complement(743001..743033) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(743256..743312) FT /note="PS01161 Glucosamine/galactosamine-6-phosphate FT isomerases signature." FT /inference="protein motif:Prosite:PS01161" FT CDS 744024..745973 FT /transl_table=11 FT /gene="nagE" FT /locus_tag="ROD_06811" FT /product="N-acetylglucosamine-specific PTS system EIICBA FT components" FT /EC_number="2.7.1.-" FT /db_xref="GOA:D2TNI5" FT /db_xref="InterPro:IPR001127" FT /db_xref="InterPro:IPR001996" FT /db_xref="InterPro:IPR003352" FT /db_xref="InterPro:IPR010974" FT /db_xref="InterPro:IPR011055" FT /db_xref="InterPro:IPR011535" FT /db_xref="InterPro:IPR013013" FT /db_xref="InterPro:IPR018113" FT /db_xref="UniProtKB/TrEMBL:D2TNI5" FT /protein_id="CBG87455.1" FT /translation="MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQAG FT GAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGIIT FT GLVGGAVYNRWADIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGG FT EWIVSAGAFGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAG FT DGTAGMFMSGFFPIMMFGLPGAALAMYLAAPKARRPMVGGMLLSVAITAFLTGVTEPLE FT FLFMFLAPLLYLLHAVLTGISLFIATLLGIHAGFSFSAGAIDYVLMYSLPAASDNVWML FT LVMGLAFFVIYFLLFSAVIRMFNLKTPGREDKEDDVVTEEANSNTEEGLTQLATNYIAA FT VGGTDNLKAIDACITRLRLTVGDSARVSDAMCKRLGASGVVKLNKQTIQVIVGAKAESI FT GDAMKKVVARGPVAAASAEAAPAPAAAPVAKPQAVPNAVTIAELVSPITGEVVALDQVP FT DEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTV FT ALNGQGFKRLVEEGAQVTAGQPILEMDLDYLNANARSMISPVVCSNIDDFSALVLKAEG FT HVVAGQTPLYEIKG" FT misc_feature 744054..744923 FT /gene="nagE" FT /locus_tag="ROD_06811" FT /note="HMMPfam hit to PF02378, Phosphotransferase system, FT EIIC, score 3.5e-100" FT /inference="protein motif:PFAM:PF02378" FT misc_feature join(744060..744113,744141..744209,744228..744296, FT 744309..744377,744414..744482,744510..744578, FT 744597..744665,744708..744776,744795..744863, FT 744906..744974,745032..745100) FT /gene="nagE" FT /locus_tag="ROD_06811" FT /note="11 probable transmembrane helices predicted for FT ROD06811 by TMHMM2.0 at aa 13-30, 40-62, 69-91, 96-118, FT 131-153, 163-185, 192-214, 229-251, 258-280, 295-317 and FT 337-359" FT misc_feature 745200..745304 FT /gene="nagE" FT /locus_tag="ROD_06811" FT /note="HMMPfam hit to PF00367, Phosphotransferase system, FT EIIB, score 3.8e-15" FT /inference="protein motif:PFAM:PF00367" FT misc_feature 745236..745289 FT /note="PS01035 PTS EIIB domains cysteine phosphorylation FT site signature." FT /inference="protein motif:Prosite:PS01035" FT misc_feature 745512..745910 FT /gene="nagE" FT /locus_tag="ROD_06811" FT /note="HMMPfam hit to PF00358, Phosphotransferase system, FT sugar-specific permease EIIA 1 domain, score 3.2e-85" FT /inference="protein motif:PFAM:PF00358" FT misc_feature 745713..745751 FT /note="PS00371 PTS EIIA domains phosphorylation site FT signature 1." FT /inference="protein motif:Prosite:PS00371" FT repeat_region complement(746085..746092) FT /note="8 bp direct repeat flanking ISCro1" FT repeat_region complement(746093..748791) FT /note="Insertion sequence ISCro1. 1 of 21 intact ISCro1 FT elements in CR chromosome, all have 30 bp inverted repeats FT which contain 12 mismatches, and are flanked by direct FT repeats of varying length. This element has 8 bp direct FT repeats" FT repeat_region 746093..746122 FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT CDS complement(746123..747694) FT /transl_table=11 FT /locus_tag="ROD_06821" FT /product="ISCro1 transposase C" FT /db_xref="InterPro:IPR004291" FT /db_xref="InterPro:IPR024463" FT /db_xref="InterPro:IPR024474" FT /db_xref="UniProtKB/TrEMBL:D2TGY4" FT /protein_id="CBG87456.1" FT /translation="MDTSLAHENARLRALLQTQQDTIRQMAEYNRLLSQRVAAYASEIN FT RLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETLGEQYDPALPSAL FT RQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIETQR FT PKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQSEIYRRQGVEL FT SRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYV FT RDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYESGRITEAA FT CMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSAEQRLAARKARAASLMQ FT SLYDWIQTQMKTLSRHSDTAKAFAYLLKQWDSLNVYCSNGWVEIDNNIAENALRGVAVG FT RKNWLFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWK FT VDLSSQ" FT misc_feature complement(746687..747283) FT /locus_tag="ROD_06821" FT /note="HMMPfam hit to PF03050, Transposase, IS66, score FT 4.4e-129" FT /inference="protein motif:PFAM:PF03050" FT CDS complement(747714..748061) FT /transl_table=11 FT /locus_tag="ROD_06831" FT /product="ISCro1 transposase B" FT /db_xref="InterPro:IPR008878" FT /db_xref="UniProtKB/TrEMBL:D2TGY5" FT /protein_id="CBG87457.1" FT /translation="MISLPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFI FT FRGRRGDQIKVLWADSDGLCLFTKRLERGRFIWPVTRDGKVHLTPAQLSMLLEGINWKH FT PKRTERAGIRI" FT misc_feature complement(747720..748046) FT /locus_tag="ROD_06831" FT /note="HMMPfam hit to PF05717, Transposase (putative), IS66 FT Orf2 like, score 5.7e-70" FT /inference="protein motif:PFAM:PF05717" FT CDS complement(748061..748738) FT /transl_table=11 FT /locus_tag="ROD_06841" FT /product="ISCro1 transposase A" FT /db_xref="GOA:D2TGY6" FT /db_xref="InterPro:IPR002514" FT /db_xref="UniProtKB/TrEMBL:D2TGY6" FT /protein_id="CBG87458.1" FT /translation="MSIIFSGHYRMEYRTWITEALRLHFEEHLPRVVAGRRLGVPKSTV FT CSMFVRFRRAGLSWPLPAGMSEQELDACLYGQFSTVPVVRPESTVISETPVVKKRPRRP FT NFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQYRKGGLLPSGKNMPALLP FT VTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRLKGKLTPALLQTLIREIKG FT SSH" FT misc_feature complement(748178..748432) FT /locus_tag="ROD_06841" FT /note="HMMPfam hit to PF01527, Transposase IS3/IS911, score FT 2e-22" FT /inference="protein motif:PFAM:PF01527" FT misc_feature complement(748589..748654) FT /note="Predicted helix-turn-helix motif with score FT 1051.000, SD 2.77 at aa 29-50, sequence FT LPRVVAGRRLGVPKSTVCSMFV" FT repeat_region complement(748762..748791) FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT repeat_region complement(748792..748799) FT /note="8 bp direct repeat flanking ISCro1" FT CDS 748888..750555 FT /transl_table=11 FT /gene="glnS" FT /locus_tag="ROD_06851" FT /product="glutaminyl-tRNA synthetase" FT /db_xref="GOA:D2TNI9" FT /db_xref="InterPro:IPR000924" FT /db_xref="InterPro:IPR001412" FT /db_xref="InterPro:IPR004514" FT /db_xref="InterPro:IPR011035" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR020056" FT /db_xref="InterPro:IPR020058" FT /db_xref="InterPro:IPR020059" FT /db_xref="InterPro:IPR020061" FT /db_xref="InterPro:IPR022861" FT /db_xref="UniProtKB/TrEMBL:D2TNI9" FT /protein_id="CBG87459.1" FT /translation="MSEAEARPSNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHA FT KSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWAGEVRYSSDYF FT DQLHAYAVELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRT FT GGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGTKWCIYPMYDFTHCISDAL FT EGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDK FT HVEGWDDPRMPTISGLRRRGYTAAAIREFCKRIGVTKQDNTIEMASLESCIREDLNENA FT PRAMAVIDPVKLVIENYPQGESELVTMPNHPNKPEMGSREVPFSGEIWIDRADFREEAN FT KQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCRYDADTLSKDPADGRKVKGVI FT HWVSAAHALPVEIRLYDRLFSVPNPGAAEDFLSVLNPESLVIKQGFAEPSLKDAVAGKA FT FQFEREGYFCLDSRYATADKLVFNRTVGLRDTWAKIGE" FT misc_feature 748966..749901 FT /gene="glnS" FT /locus_tag="ROD_06851" FT /note="HMMPfam hit to PF00749, Glutamyl/glutaminyl-tRNA FT synthetase, class Ic, score 3.9e-188" FT /inference="protein motif:PFAM:PF00749" FT misc_feature 748987..749022 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT /inference="protein motif:Prosite:PS00178" FT misc_feature 749905..750474 FT /gene="glnS" FT /locus_tag="ROD_06851" FT /note="HMMPfam hit to PF03950, Glutamyl/glutaminyl-tRNA FT synthetase, class Ic, score 8.5e-109" FT /inference="protein motif:PFAM:PF03950" FT CDS 751042..752448 FT /transl_table=11 FT /locus_tag="ROD_06861" FT /product="putative exported protein" FT /db_xref="GOA:D2TNJ0" FT /db_xref="InterPro:IPR005318" FT /db_xref="UniProtKB/TrEMBL:D2TNJ0" FT /protein_id="CBG87460.1" FT /translation="MRTFSGKRSALALAIAGITAMSGLVVVPQAHAEGFIDDSTLTGGI FT YYWQRERDRKDVEDGDKYKTNLSHATWNANLDFQSGYAADMFGLDIAAFTAIEMAENGD FT SGHPNEIAFSKKNKGYDEDYSGDKSGVSLYKAAAKFKYGPVWARAGYIQPTGQTLLAPH FT WSFMPGTYQGAEAGANFDYGDAGALSFSYMWANEYKAPWHTEVDKFYQADKKTKVDYLH FT SIGAKYDFKNDLVLEAAFGQSEGYVDQYFAKASYKFDLGGNPLTTSYQFYGARDKVDDR FT STNDIYDGTAWLQALTFGYKVAEVVDLRLEGTWVKAEGQQGFFLQRMTPTYASSNGRLD FT IWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGWAVGASYVYAWDAKPSTWQSNPDAYYD FT KNRTIEESSYSLDAVYTLQDGRAKGTMFKLHFTEYDNHSNIPSWGGGYGNIFQDERDVK FT FIVIAPFTIF" FT sig_peptide 751042..751137 FT /locus_tag="ROD_06861" FT /note="Signal peptide predicted for ROD06861 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.982 between residues 32 and 33" FT misc_feature 751060..752442 FT /locus_tag="ROD_06861" FT /note="HMMPfam hit to PF03573, Outer membrane porin, FT bacterial, score 8.5e-07" FT /inference="protein motif:PFAM:PF03573" FT misc_feature 751066..751134 FT /locus_tag="ROD_06861" FT /note="1 probable transmembrane helix predicted for FT ROD06861 by TMHMM2.0 at aa 9-31" FT CDS complement(752543..753832) FT /transl_table=11 FT /gene="citA" FT /locus_tag="ROD_06871" FT /product="citrate-proton symporter" FT /db_xref="GOA:D2TNJ1" FT /db_xref="InterPro:IPR004736" FT /db_xref="InterPro:IPR005828" FT /db_xref="InterPro:IPR005829" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TNJ1" FT /protein_id="CBG87461.1" FT /translation="MSQQPSRAGTFGAILRVTSGNFLEQFDFFLFGFYATYIAKTFFPA FT ESEFASLMLTFAVFGSGFLMRPVGAVVLGSYIDRIGRRKGLMVTLAIMGCGTLLIALVP FT GYQTIGVLAPVLVLLGRLLQGFSAGVELGGVSVYLSEIATPGRKGFYTSWQSASQQVAI FT VVAALIGYGLNVTLGHDDISEWGWRIPFFIGCMIIPLIFVLRRSLQETEAFMQRKHRPD FT TREIFATIIKNWRIITAGTLLVAMTTTTFYFITVYTPTYGRAVLHLSARDSLIVTMLVG FT ISNFIWLPIGGAISDKIGRRPVLMGITLLALLTTWPVMHWLTAAPDFTRMTLVLLWFSF FT FFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALVQMTGDKSSPG FT WWLMCAALCGLAATAMLFVRLSRGYHPVEN" FT misc_feature complement(join(752573..752641,752669..752737, FT 752774..752833,752861..752929,752948..753016, FT 753059..753127,753209..753268,753296..753355, FT 753416..753484,753512..753580,753617..753685, FT 753728..753796)) FT /gene="citA" FT /locus_tag="ROD_06871" FT /note="12 probable transmembrane helices predicted for FT ROD06871 by TMHMM2.0 at aa 13-35, 50-72, 85-107, 117-139, FT 160-179, 189-208, 236-258, 273-295, 302-324, 334-353, FT 366-388 and 398-420" FT misc_feature complement(752582..753775) FT /gene="citA" FT /locus_tag="ROD_06871" FT /note="HMMPfam hit to PF00083, General substrate FT transporter, score 4e-72" FT /inference="protein motif:PFAM:PF00083" FT misc_feature complement(752909..752962) FT /note="PS00216 Sugar transport proteins signature 1." FT /inference="protein motif:Prosite:PS00216" FT misc_feature complement(753389..753466) FT /note="PS00217 Sugar transport proteins signature 2." FT /inference="protein motif:Prosite:PS00217" FT misc_feature complement(753548..753580) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(753566..753616) FT /note="PS00216 Sugar transport proteins signature 1." FT /inference="protein motif:Prosite:PS00216" FT CDS complement(753887..755026) FT /transl_table=11 FT /gene="citB" FT /locus_tag="ROD_06881" FT /product="citrate utilisation protein B" FT /db_xref="InterPro:IPR012830" FT /db_xref="InterPro:IPR023234" FT /db_xref="UniProtKB/TrEMBL:D2TNJ2" FT /protein_id="CBG87462.1" FT /translation="MKQLEKLIIEAQIITQPEAEVERVMQVCNACRYCEGFCAVFPAMT FT QRLAFGKADINYLANLCHNCGACLHACQYAPPHEFAINVPKAMAEVRLETYQHYAQPAA FT FGALYRRAGVTTVLTLVFGLVLFLLLALGLKGSLLHPPLAGDFYQIFPHNLLAWMFGSV FT FILAIGLLMAGVIRFWREISPVVPQPVEIAEAAHNALTLKYLDGGHGKGCNEADDAFTL FT MRRRFHHFTFYGFMLCFAATVVATGYHYFAGWEAPYPFFSVPVILGTLGGLGLIVGPAG FT LLWLNLKRSPLHGDARQKPMDRGFILLLLLTSLTGLALLAGRDTAWMGVLLAVHLGVVM FT ALFLTLPYGKFAHGFYRCASLLKWAIEKRRGKQAGVAGD" FT misc_feature complement(join(753983..754051,754061..754114, FT 754175..754243,754271..754339,754499..754567, FT 754625..754693)) FT /gene="citB" FT /locus_tag="ROD_06881" FT /note="6 probable transmembrane helices predicted for FT ROD06881 by TMHMM2.0 at aa 112-134, 154-176, 230-252, FT 262-284, 305-322 and 326-348" FT misc_feature complement(754793..754864) FT /gene="citB" FT /locus_tag="ROD_06881" FT /note="HMMPfam hit to PF00037, 4Fe-4S ferredoxin, FT iron-sulphur binding, score 0.0032" FT /inference="protein motif:PFAM:PF00037" FT CDS complement(755013..756416) FT /transl_table=11 FT /locus_tag="ROD_06891" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TNJ3" FT /db_xref="InterPro:IPR003953" FT /db_xref="InterPro:IPR012831" FT /db_xref="UniProtKB/TrEMBL:D2TNJ3" FT /protein_id="CBG87463.1" FT /translation="MVDVLVIGGGNAALCAALTARQAGASVLLLEAAPREWRGGNSQHT FT RNLRCMHDAPQDVLVDSYPEEEFWQDLWRVTGGNTNEALARLVIRTSSHCRDWMRKHGV FT NFQPPLSGALHVARTNAFFMGGGKALVNAYYRSAENLGVAIRYNTPVQALELHNGEFVA FT ALAGDERITARTCVLAAGGFESNREWLREAWGQNARGEWPADNFLIRGTRFNQGVLLKF FT MIDAGADIIGDPSQSHCVAIDARAPLYDGGICTRVDCVSLGVVVNRDAERFYDEGEDFW FT PKRYAIWGRLVAQQPGQTGFSIIDSKAIGHFMPPVFPGAQGDTLEELARQLGLDEQRFT FT DTITRYNQACQPGQFDHTTLDNCATAALTPPKTHWARPIDTPPYYGYALRPGITFTYLG FT LKVNERAAVHFAGKPSRNLFVAGEMMAGNVLGKGYTAGVGMSIGTTFGRIAGEQAALAA FT QKEANHEAA" FT misc_feature complement(755868..756032) FT /locus_tag="ROD_06891" FT /note="HMMPfam hit to PF01266, FAD dependent FT oxidoreductase, score 6.8e-09" FT /inference="protein motif:PFAM:PF01266" FT CDS complement(756512..757438) FT /transl_table=11 FT /locus_tag="ROD_06901" FT /product="lysR-family transcriptional regulator" FT /db_xref="GOA:D2TNJ4" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TNJ4" FT /protein_id="CBG87464.1" FT /translation="MELRQLRYFVRIVETGSMGNAALDLDIGVSALSQQMTRLENELAI FT RLLQRTSRGVTPTNAGLAFYSQAQLALRHADDAVLAAREARLSGHVSVGMAPSTASVLG FT MPFIHAMRESYPDVRLHVVESLSGNLERMINTRQLDLAVVFQKEKILRWSARPVLEERL FT FLIGAHDLLANLPDERITPVQLSSVPLIMPSLGHGLRGRLEAIAQEHGLHIEIAAEIDG FT LALLMRAVREGLGATLQPGAAVSHLDRDALRVIGVDNPVLSRPNFLVSLSDDELPPAGL FT AARVVLTKVMRQLVEAGVWPGATLYVN" FT misc_feature complement(756563..757189) FT /locus_tag="ROD_06901" FT /note="HMMPfam hit to PF03466, LysR, substrate-binding, FT score 2.3e-38" FT /inference="protein motif:PFAM:PF03466" FT misc_feature complement(757253..757432) FT /locus_tag="ROD_06901" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 5.1e-15" FT /inference="protein motif:PFAM:PF00126" FT CDS complement(757564..758010) FT /transl_table=11 FT /gene="fur" FT /locus_tag="ROD_06911" FT /product="ferric uptake regulation protein" FT /db_xref="GOA:D2TNJ5" FT /db_xref="InterPro:IPR002481" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TNJ5" FT /protein_id="CBG87465.1" FT /translation="MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLID FT MGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEFSD FT DSIEARQREIAAKHGIRLTNHSLYLYGHCAEGDCREDDHAHDAK" FT misc_feature complement(757621..757983) FT /gene="fur" FT /locus_tag="ROD_06911" FT /note="HMMPfam hit to PF01475, Ferric-uptake regulator, FT score 3.2e-74" FT /inference="protein motif:PFAM:PF01475" FT CDS complement(758292..758822) FT /transl_table=11 FT /gene="fldA" FT /locus_tag="ROD_06921" FT /product="flavodoxin 1" FT /db_xref="GOA:D2TNJ6" FT /db_xref="InterPro:IPR001226" FT /db_xref="InterPro:IPR008254" FT /db_xref="InterPro:IPR010086" FT /db_xref="UniProtKB/TrEMBL:D2TNJ6" FT /protein_id="CBG87466.1" FT /translation="MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLE FT GYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGT FT IRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQ FT ISDELHLDDIINA" FT misc_feature complement(758343..758807) FT /gene="fldA" FT /locus_tag="ROD_06921" FT /note="HMMPfam hit to PF00258, Flavodoxin/nitric oxide FT synthase, score 8.9e-55" FT /inference="protein motif:PFAM:PF00258" FT misc_feature complement(758757..758807) FT /note="PS00201 Flavodoxin signature." FT /inference="protein motif:Prosite:PS00201" FT CDS complement(758972..759265) FT /transl_table=11 FT /locus_tag="ROD_06931" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TNJ7" FT /db_xref="InterPro:IPR002145" FT /db_xref="UniProtKB/TrEMBL:D2TNJ7" FT /protein_id="CBG87467.1" FT /translation="MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRD FT KVRGLKRVELKLNAEAVDALNELAESRNMSRSELIEEMLMTQLAALRGQGAL" FT misc_feature complement(758996..759112) FT /locus_tag="ROD_06931" FT /note="HMMPfam hit to PF01402, CopG-like DNA-binding, score FT 2.1e-08" FT /inference="protein motif:PFAM:PF01402" FT CDS complement(759394..760167) FT /transl_table=11 FT /locus_tag="ROD_06941" FT /product="putative esterase/lipase" FT /db_xref="UniProtKB/TrEMBL:D2TNJ8" FT /protein_id="CBG87468.1" FT /translation="MKLNIRAQTAQNLHNNSPIVLVHGLFGSLDNLGGLARELVSDHDI FT IQVDMRNHGFSPRDPRMDYPAMAQDLRDTLDAQQIEKATFIGHSMGGKAVMALTALAPE FT RIDGLVAIDIAPVDYQVRRHDEIFAAINAVTTSDAQTRQQAAAVMREHLKEEGVIQFLL FT KSYVDGEWRFNVPVLWDQYPHIVGWEPVAAWDRPALFIPGGNSPYVTEAYRADLLAQFP FT QARAHVIAGAGHWVHAEKPDAVLRAIRRYLNDIAD" FT misc_feature complement(759418..760041) FT /locus_tag="ROD_06941" FT /note="HMMPfam hit to PF00561, Alpha/beta hydrolase fold-1, FT score 1.3e-21" FT /inference="protein motif:PFAM:PF00561" FT CDS 760357..760902 FT /transl_table=11 FT /gene="seqA" FT /locus_tag="ROD_06951" FT /product="negative modulator of initiation of replication" FT /db_xref="GOA:D2TNJ9" FT /db_xref="InterPro:IPR005621" FT /db_xref="InterPro:IPR010985" FT /db_xref="UniProtKB/TrEMBL:D2TNJ9" FT /protein_id="CBG87469.1" FT /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPVASA FT TKEVRAAQPVSAETKPVNPVKDKVRAMRELLLSDEYAEQRKAVNRFMLVLSTLYSLDHQ FT AFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHI FT MQSMQFPAELIEKVCGTI" FT misc_feature 760357..760899 FT /gene="seqA" FT /locus_tag="ROD_06951" FT /note="HMMPfam hit to PF03925, SeqA protein, score FT 7.5e-138" FT /inference="protein motif:PFAM:PF03925" FT CDS 760926..762566 FT /transl_table=11 FT /gene="pgm" FT /locus_tag="ROD_06961" FT /product="phosphoglucomutase" FT /EC_number="5.4.2.2" FT /db_xref="GOA:D2TNK0" FT /db_xref="InterPro:IPR005843" FT /db_xref="InterPro:IPR005844" FT /db_xref="InterPro:IPR005845" FT /db_xref="InterPro:IPR005846" FT /db_xref="InterPro:IPR005852" FT /db_xref="InterPro:IPR016055" FT /db_xref="InterPro:IPR016066" FT /db_xref="UniProtKB/TrEMBL:D2TNK0" FT /protein_id="CBG87470.1" FT /translation="MAIHTRAGQPAQQSDLINVAQLTAQYYVLKPETGNKEHAVKFGTS FT GHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAA FT NGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGG FT PADTNVTRVVEDRANALLADGLKGVKRISLDAAMASGHVKEQDLVQPFVEGLAEIVDMT FT AIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTIVNDQVDQTFRFMHLDKDGAIRMDC FT SSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFRHRPQWG FT KEVAVGKTLVSSAMIDRVVNDLGRRLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLR FT FDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAKRFGAPSYNRLQAGATSAQKA FT ALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKI FT YCESFLGEEHRKQIEKEAVEIVSEVLKNA" FT misc_feature 761040..761477 FT /gene="pgm" FT /locus_tag="ROD_06961" FT /note="HMMPfam hit to PF02878, FT Phosphoglucomutase/phosphomannomutase alpha/beta/alpha FT domain I, score 5.6e-43" FT /inference="protein motif:PFAM:PF02878" FT misc_feature 761343..761387 FT /note="PS00710 Phosphoglucomutase and phosphomannomutase FT phosphoserine signature." FT /inference="protein motif:Prosite:PS00710" FT misc_feature 761550..761882 FT /gene="pgm" FT /locus_tag="ROD_06961" FT /note="HMMPfam hit to PF02879, FT Phosphoglucomutase/phosphomannomutase alpha/beta/alpha FT domain II, score 3.9e-19" FT /inference="protein motif:PFAM:PF02879" FT misc_feature 761883..762245 FT /gene="pgm" FT /locus_tag="ROD_06961" FT /note="HMMPfam hit to PF02880, FT Phosphoglucomutase/phosphomannomutase alpha/beta/alpha FT domain III, score 3.5e-29" FT /inference="protein motif:PFAM:PF02880" FT misc_feature 762291..762557 FT /gene="pgm" FT /locus_tag="ROD_06961" FT /note="HMMPfam hit to PF00408, FT Phosphoglucomutase/phosphomannomutase C-terminal, score FT 9e-15" FT /inference="protein motif:PFAM:PF00408" FT repeat_region complement(762588..762597) FT /note="10 bp direct repeat flanking ISCro2" FT repeat_region complement(762598..763878) FT /note="Insertion sequence ISCro2. Flanked by 20 bp inverted FT repeats which contain 2 mismatches, and 10 bp direct FT repeats. 1 of 3 identical ISCro2 elements in CR chromosome" FT repeat_region 762598..762617 FT /note="20 bp terminal inverted repeat of ISCro2, contains 3 FT mismatches (2 mismatches common to all ISCro2 inverted FT repeats plus one unique mismatch)" FT CDS complement(762621..763796) FT /transl_table=11 FT /locus_tag="ROD_06971" FT /product="ISCro2 transposase" FT /db_xref="GOA:D2THV3" FT /db_xref="InterPro:IPR002559" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:D2THV3" FT /protein_id="CBG87471.1" FT /translation="MPASQVCHKFFSQSLNSIHQYRKNALLDMTVALTRGASLSLTSIG FT RYLPGPARVKHKIKRVDRHLNSDLMFSDIPSVYRQLVSRLTHSLSVCVIAVDWSGYPSS FT ELSVLRASLLCDGRAIPLMSKVISSRYQNNSAVQNAFLDQMATAIGKDKQVIIVTDAGF FT RSSWFHHIRSLGWDFVGRVRGSLYFQVVGDEDWQMARDIASSTTARYLGFGRLARNASR FT DCPGHFYTVHKRATGRKSSQHYPRTDRMYRKNAREPWLLFTSLMEYKPREIVKIYSRRM FT QIEQNFRDEKSERYGLGLRASKSRGEKRISVLCLVAVLYSIIIWLTGYYLESKGINRWF FT QANSEKSRRVLSYLTLSENVIRQSPGLLSGMNPDRVYADMARAYRNIIMVY" FT misc_feature complement(762804..762872) FT /locus_tag="ROD_06971" FT /note="1 probable transmembrane helix predicted for FT ROD06971 by TMHMM2.0 at aa 309-331" FT misc_feature complement(762837..763520) FT /locus_tag="ROD_06971" FT /note="HMMPfam hit to PF01609, Transposase, IS4-like, score FT 5.4e-13" FT /inference="protein motif:PFAM:PF01609" FT repeat_region complement(763859..763878) FT /note="20 bp terminal inverted repeat of ISCro2, contains 2 FT mismatches" FT repeat_region complement(763879..763888) FT /note="10 bp direct repeat flanking ISCro2" FT CDS complement(763962..765281) FT /transl_table=11 FT /gene="adiC" FT /locus_tag="ROD_06981" FT /product="arginine/agmatine antiporter" FT /db_xref="GOA:D2TNK2" FT /db_xref="InterPro:IPR002293" FT /db_xref="InterPro:IPR004754" FT /db_xref="InterPro:IPR004841" FT /db_xref="UniProtKB/TrEMBL:D2TNK2" FT /protein_id="CBG87472.1" FT /translation="MSKAKANKMGVIQLTILTMVNMMGSGIIMLPTKLAEVGTISIISW FT LVTAVGSMALAWAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVAIA FT ISAVGYGTELFGATLSPVQIGLATIGVLWICTVANFGGARITGQLSSITVWGVIIPVVG FT LCIIGWFWFSPTLYVNSWNPHHVPFFTAVGSSIAMTLWAFLGLESACANAEVVDNPERN FT VPIAVLGGTLGAAVIYIVSTNVIAGIVPNMDLANSTAPFGLAFAQMFTPEVGKVIMALM FT IMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTKVDAPVQGMLTIVIIQSGLSLMT FT ISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPTKAKMANFVAFVGAMYS FT FYALYSSGEEAMLYGSIVTFLGWTLYGLVSPRFELKNKHG" FT misc_feature complement(join(763995..764054,764067..764123, FT 764160..764228,764256..764315,764409..764477, FT 764535..764603,764664..764723,764766..764834, FT 764853..764921,764949..765017,765105..765173, FT 765189..765257)) FT /gene="adiC" FT /locus_tag="ROD_06981" FT /note="12 probable transmembrane helices predicted for FT ROD06981 by TMHMM2.0 at aa 9-31, 37-59, 89-111, 121-143, FT 150-172, 187-206, 227-249, 269-291, 323-342, 352-374, FT 387-405 and 410-429" FT misc_feature complement(764169..764717) FT /gene="adiC" FT /locus_tag="ROD_06981" FT /note="HMMPfam hit to PF00324, Amino acid FT permease-associated region, score 1.8e-08" FT /inference="protein motif:PFAM:PF00324" FT misc_feature complement(765033..765056) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(765278..767476) FT /transl_table=11 FT /gene="speF" FT /locus_tag="ROD_06991" FT /product="ornithine decarboxylase isozyme, inducible" FT /EC_number="4.1.1.17" FT /db_xref="GOA:D2TNK3" FT /db_xref="InterPro:IPR000310" FT /db_xref="InterPro:IPR005308" FT /db_xref="InterPro:IPR008286" FT /db_xref="InterPro:IPR011006" FT /db_xref="InterPro:IPR011193" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015422" FT /db_xref="InterPro:IPR015424" FT /db_xref="UniProtKB/TrEMBL:D2TNK3" FT /protein_id="CBG87473.1" FT /translation="MSELKIAVSRSCPDCFSTQRSIVNVDETHFIDVAAVVLSVNDIER FT GKLDEIDATGYGIPVFIATENEERVPADYLPRISGVFECHEARAAFYGRQLESAASHYE FT TQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGETLFRADLCNAD FT VAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRN FT NHKSNHHGALLQAGATPVYLETARNPYGFIGGIDAHCFDESYLRELVSEVAPQRARDAR FT PFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPLLLDL FT NENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQPRYVPHKRMNNAFMMHASTSPFY FT PLFAALDVNAKMHEGVSGRNMWMDCVANGIDARKLILENCHHIRPFVPETVDSKPWHAY FT PTAEIANDLRFFHFVPGESWHAFEGYAEHQYFVDPCKLLLTTPGINARTGEYDTFGVPA FT TILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLLESDAPLAEVL FT PSIYRQHEARYGGYTLRQLCQEMHDLYARHNVKQLQKEMFRKAHFPRVSMNPQEANYAY FT LRGEVELVPLPQAEGRIAAEGALPYPPGVLCVVPGEVWGGAVLRYFSALEEGINLLPGF FT APELQGVYIEERDGRKQVWCYVIKAREAQHDLLKGETV" FT misc_feature complement(765350..765751) FT /gene="speF" FT /locus_tag="ROD_06991" FT /note="HMMPfam hit to PF03711, Orn/Lys/Arg decarboxylase, FT C-terminal, score 1.8e-85" FT /inference="protein motif:PFAM:PF03711" FT misc_feature complement(765773..767152) FT /gene="speF" FT /locus_tag="ROD_06991" FT /note="HMMPfam hit to PF01276, Orn/Lys/Arg decarboxylase, FT major region, score 0" FT /inference="protein motif:PFAM:PF01276" FT misc_feature complement(766385..766429) FT /note="PS00703 Orn/Lys/Arg decarboxylases family 1 FT pyridoxal-P attachment site." FT /inference="protein motif:Prosite:PS00703" FT misc_feature complement(767168..767467) FT /gene="speF" FT /locus_tag="ROD_06991" FT /note="HMMPfam hit to PF03709, Orn/Lys/Arg decarboxylase, FT N-terminal, score 2.5e-46" FT /inference="protein motif:PFAM:PF03709" FT CDS complement(768116..768793) FT /transl_table=11 FT /gene="kdpE" FT /locus_tag="ROD_07001" FT /product="two-component response regulator" FT /db_xref="GOA:D2TNK4" FT /db_xref="InterPro:IPR001789" FT /db_xref="InterPro:IPR001867" FT /db_xref="InterPro:IPR011006" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TNK4" FT /protein_id="CBG87474.1" FT /translation="MTNVLIVEDEQAIRRFLRSALEGDGLRVFEAETLQRGLLEAATRK FT PDLIILDLGLPDGDGIDFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFG FT IGELQARLRVALRRHASAPAPEPVVRFSDVTIDLAARLIHRGEKEIHLTPIEFRLLAVM FT LNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMAHLRQKLEQDPARPRHFITETGIGYR FT FMP" FT misc_feature complement(768125..768355) FT /gene="kdpE" FT /locus_tag="ROD_07001" FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C-terminal, score 7.9e-18" FT /inference="protein motif:PFAM:PF00486" FT misc_feature complement(768455..768790) FT /gene="kdpE" FT /locus_tag="ROD_07001" FT /note="HMMPfam hit to PF00072, Response regulator receiver, FT score 1.1e-47" FT /inference="protein motif:PFAM:PF00072" FT CDS complement(768790..771477) FT /transl_table=11 FT /gene="kdpD" FT /locus_tag="ROD_07011" FT /product="two-component sensor kinase" FT /db_xref="GOA:D2TNK5" FT /db_xref="InterPro:IPR003594" FT /db_xref="InterPro:IPR003661" FT /db_xref="InterPro:IPR003852" FT /db_xref="InterPro:IPR004358" FT /db_xref="InterPro:IPR005467" FT /db_xref="InterPro:IPR006016" FT /db_xref="InterPro:IPR009082" FT /db_xref="UniProtKB/TrEMBL:D2TNK5" FT /protein_id="CBG87475.1" FT /translation="MVNEEPLRPDPDRLLEQTAAPHRGKLKIFFGACAGVGKTWAMLAE FT AQRLRAQGLDVLVGVVETHGRQETAALLEGLVLLPLKRQAHRGRHISEFDLDAALARRP FT ALILVDELAHSNAPGSRHPRRWQDIEELLDAGIDVFTTVNVQHLESLNDVVSGVTGIQV FT RETVPDPFFDAADEVVLVDLPPDDLHQRLKEGKVYFAGQAERAIERFFRKGNLIALREL FT ALRRTADRVDEQMRAWRARPGEDKVWHTRDAILLCIGHNTGSEKLVRAAARLASRLGSV FT WHAVYVETPALHRLAEKQRRDILSALRLAQELGAETATLSDPCADKAAVRYAREHNLGK FT IVLGRPSSRRWWRKDNFAERLAKRAPELDVLIVALDEPPRRALPAVPDTRSVKDKWRVQ FT IQGCLVAVALCAITTVIASQWLAAFDEANLVMLYLLGVVVVSLFYGRWPSVFATVISVI FT SFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVVGNLTAGVRYQARVARYREQRARHLY FT EMSKALAMGRSEQDIAAISERFIASTFHARSQVLLPDEHGRLVPLTRQQGITPWDDAIA FT RWSFDKGLPAGAGTDTLPAVPYQFMPLRCAEKTYGLVIVEPGNLRQLMIPEQQRLLETF FT TLLVANALERLTLTASEEQARLASERESLRNALLAALSHDLRTPLTVLFGQAEILTLDL FT ASEGSAHAKQASEIRQQILNTTRLVNNLLDMARIQSGGFNLHKEWLTLEEVVGSALKML FT EPGLLQPVNLSLPAPLTLIHVDGPLFERVLINLLENAIKYAGPQAEIGIDAQVTNNRLQ FT LEVWDNGPGIPEGQQQFIFDKFARGNKESAVPGVGLGLAICRAIVEVHGGTLTVRNRPQ FT GGACFRVTLVQEPPPALEDFHEAM" FT misc_feature complement(768829..769158) FT /gene="kdpD" FT /locus_tag="ROD_07011" FT /note="HMMPfam hit to PF02518, ATP-binding region, FT ATPase-like, score 1.6e-37" FT /inference="protein motif:PFAM:PF02518" FT misc_feature complement(769285..769488) FT /gene="kdpD" FT /locus_tag="ROD_07011" FT /note="HMMPfam hit to PF00512, Histidine kinase A, FT N-terminal, score 5.5e-15" FT /inference="protein motif:PFAM:PF00512" FT misc_feature complement(join(769975..770043,770080..770148, FT 770206..770274)) FT /gene="kdpD" FT /locus_tag="ROD_07011" FT /note="3 probable transmembrane helices predicted for FT ROD07011 by TMHMM2.0 at aa 402-424, 444-466 and 479-501" FT misc_feature complement(770356..770730) FT /gene="kdpD" FT /locus_tag="ROD_07011" FT /note="HMMPfam hit to PF00582, UspA, score 1.1e-10" FT /inference="protein motif:PFAM:PF00582" FT misc_feature complement(770785..771411) FT /gene="kdpD" FT /locus_tag="ROD_07011" FT /note="HMMPfam hit to PF02702, Osmosensitive K+ channel His FT kinase sensor, N-terminal, score 9.5e-155" FT /inference="protein motif:PFAM:PF02702" FT misc_feature complement(771361..771384) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(771477..772043) FT /transl_table=11 FT /gene="kdpC" FT /locus_tag="ROD_07021" FT /product="potassium-transporting ATPase C chain" FT /db_xref="GOA:D2TNK6" FT /db_xref="InterPro:IPR003820" FT /db_xref="UniProtKB/TrEMBL:D2TNK6" FT /protein_id="CBG87476.1" FT /translation="MSQLRPLLSTLVFLMLMTGGVYPLLTTALGQGWFAPQANGSLIIE FT DNVVRGSALIGQNFTAEGYFHGRPSATADMPYNPLASGGSNLAASNPALDAELQRRIAA FT LRAANPQASATVPVELVTASASGLDNNLTPAAVAWQIPRVARARNLSVETVTQLVAKYS FT QTPPVSFIGQPVVNLVELNLALDKL" FT misc_feature complement(771480..772043) FT /gene="kdpC" FT /locus_tag="ROD_07021" FT /note="HMMPfam hit to PF02669, K+ transporting ATPase, KdpC FT subunit, score 3.4e-112" FT /inference="protein motif:PFAM:PF02669" FT misc_feature complement(771564..771629) FT /note="Predicted helix-turn-helix motif with score FT 1158.000, SD 3.13 at aa 139-160, sequence FT WQIPRVARARNLSVETVTQLVA" FT misc_feature complement(771957..772025) FT /gene="kdpC" FT /locus_tag="ROD_07021" FT /note="1 probable transmembrane helix predicted for FT ROD07021 by TMHMM2.0 at aa 7-29" FT sig_peptide complement(771960..772043) FT /gene="kdpC" FT /locus_tag="ROD_07021" FT /note="Signal peptide predicted for ROD07021 by SignalP 2.0 FT HMM (Signal peptide probability 0.921) with cleavage site FT probability 0.613 between residues 28 and 29" FT CDS complement(772052..774100) FT /transl_table=11 FT /gene="kdpB" FT /locus_tag="ROD_07031" FT /product="potassium-transporting ATPase B chain" FT /db_xref="GOA:D2TNK7" FT /db_xref="InterPro:IPR001757" FT /db_xref="InterPro:IPR005834" FT /db_xref="InterPro:IPR006391" FT /db_xref="InterPro:IPR008250" FT /db_xref="InterPro:IPR018303" FT /db_xref="InterPro:IPR023214" FT /db_xref="InterPro:IPR023299" FT /db_xref="InterPro:IPR023300" FT /db_xref="UniProtKB/TrEMBL:D2TNK7" FT /protein_id="CBG87477.1" FT /translation="MSRKQLALFEPPLVTQALTEAVKKLSPRAQWRNPVMFIVWIGSLL FT TTLIALAMFSGLMSGNAWFSGAICLWLWITVLFANFAEALAEGRSKAQANSLKGVKKSA FT FARKLCEPKYGAQAEQVPAEALRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITGESA FT PVIRESGGDFASVTGGTRILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNEIALT FT ILLIALTIVFLLATATLWPFSAWGGQAVSITVLIALLVCLIPTTIGGLLSAIGVAGMSR FT MLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASAFLPANGVDERALADAAQLA FT SLADETPEGRSIAILARQRFNLRERDAQSLHATFVPFTAQSRMSGINIDNRTIRKGSVD FT AIRRYVAANGGQFPEDVGQKVDSVARNGATPLVVVEGARVLGVIALKDIVKGGIKERFA FT QLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTG FT DGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLT FT TFSIANDVAKYFAIIPAAFAATYPQLNALNIMRLHSPDSAILSAVIFNALIIVFLIPLA FT LKGVSYRPLSASAMLRRNLWIYGLGGLLAPFIGIKVIDLLLTLSGLV" FT misc_feature complement(join(772073..772141,772199..772258, FT 772301..772369,773279..773347,773375..773443, FT 773846..773914,773927..773995)) FT /gene="kdpB" FT /locus_tag="ROD_07031" FT /note="7 probable transmembrane helices predicted for FT ROD07031 by TMHMM2.0 at aa 36-58, 63-85, 220-242, 252-274, FT 578-600, 615-634 and 654-676" FT misc_feature complement(772484..773200) FT /gene="kdpB" FT /locus_tag="ROD_07031" FT /note="HMMPfam hit to PF00702, Haloacid dehalogenase-like FT hydrolase, score 3.9e-35" FT /inference="protein motif:PFAM:PF00702" FT misc_feature complement(773162..773182) FT /note="PS00154 E1-E2 ATPases phosphorylation site." FT /inference="protein motif:Prosite:PS00154" FT misc_feature complement(773210..773890) FT /gene="kdpB" FT /locus_tag="ROD_07031" FT /note="HMMPfam hit to PF00122, E1-E2 ATPase-associated FT region, score 3e-63" FT /inference="protein motif:PFAM:PF00122" FT CDS complement(774118..775797) FT /transl_table=11 FT /gene="kdpA" FT /locus_tag="ROD_07041" FT /product="potassium-transporting ATPase A chain" FT /db_xref="GOA:D2TNK8" FT /db_xref="InterPro:IPR004623" FT /db_xref="UniProtKB/TrEMBL:D2TNK8" FT /protein_id="CBG87478.1" FT /translation="MAAQGFLLIASFLSLLFLLARPVGAGLTRLINTKPLPGTAGIERV FT LWRGLGISAQEMSWKQYLLAILSVNLLGLAALFMLLRFQHLLPLNPQQLPGLSWHLALN FT TAVSFVTNTNWQSYGGETTLSYFSQMAGLTVQNFLSAATGVAVAFALIRGFTRQSISTL FT GNAWVDLTRITLWILFPLALLIALFFIQQGVPQNLLPYQPYTTLEGVKQLLPMGPVASQ FT EAIKMLGTNGGGFFNANSAHPFENPTALTNMVQMLAIFLLPAALCFAFGDAAGDRRQGR FT MLLWAMSLMFIVCAAVVMWAEVQGNPHLLQYGADSSLNMEGKESRFGVVVSSLFAVVTT FT AASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMLLFVLLAVFIAGLMIG FT RTPEYLGKKIDVREMKMTALAILVTPALVLSGSALAMMSEAGRSAMLNPGAHGFSEVLY FT AVSSAANNNGSAFAGLGANTPFWNCLLAFCMFVGRFGVIIPVMAIAGSLAVKKRQPTTA FT GTLATHDALFVGLLTGTVLLVGALTFIPALALGPVAEHLSLR" FT misc_feature complement(774124..775779) FT /gene="kdpA" FT /locus_tag="ROD_07041" FT /note="HMMPfam hit to PF03814, K+ transporting ATPase, A FT subunit, score 0" FT /inference="protein motif:PFAM:PF03814" FT misc_feature complement(join(774154..774222,774283..774351, FT 774475..774543,774601..774660,774670..774738, FT 774751..774819,774886..774954,774988..775056, FT 775213..775281,775342..775410,775555..775614, FT 775717..775785)) FT /gene="kdpA" FT /locus_tag="ROD_07041" FT /note="12 probable transmembrane helices predicted for FT ROD07041 by TMHMM2.0 at aa 5-27, 62-81, 130-152, 173-195, FT 248-270, 282-304, 327-349, 354-376, 380-399, 419-441, FT 483-505 and 526-548" FT misc_feature complement(774766..774798) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT sig_peptide complement(775723..775797) FT /gene="kdpA" FT /locus_tag="ROD_07041" FT /note="Signal peptide predicted for ROD07041 by SignalP 2.0 FT HMM (Signal peptide probability 0.993) with cleavage site FT probability 0.960 between residues 25 and 26" FT CDS complement(775797..775886) FT /transl_table=11 FT /gene="kdpF" FT /locus_tag="ROD_07042" FT /product="potassium ion accessory transporter subunit" FT /db_xref="InterPro:IPR011726" FT /db_xref="UniProtKB/TrEMBL:D2TNK9" FT /protein_id="CBG87479.1" FT /translation="MSAGVIIGIVLICLLVIYLVFALIHAEAF" FT misc_feature complement(775809..775877) FT /gene="kdpF" FT /locus_tag="ROD_07042" FT /note="1 probable transmembrane helix predicted for FT ROD07042 by TMHMM2.0 at aa 4-26" FT CDS 776195..776401 FT /transl_table=11 FT /locus_tag="ROD_07051" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR019663" FT /db_xref="UniProtKB/TrEMBL:D2TNL0" FT /protein_id="CBG87480.1" FT /translation="MELYKDYPAHVILLRRTFAVVAGVLALPVMLFWKDRARFYSYLHR FT VWSKTSDKPVWMAQAEKATCDFY" FT misc_feature 776225..776293 FT /locus_tag="ROD_07051" FT /note="1 probable transmembrane helix predicted for FT ROD07051 by TMHMM2.0 at aa 11-33" FT repeat_region 776424..776434 FT /note="11 bp direct repeat flanking ISCro6" FT repeat_region 776435..777849 FT /note="Insertion sequence ISCro6. Flanked by 18 bp inverted FT repeats which contain 3 mismatches, and 11 bp direct FT repeats. 1 of 5 ISCro6 elements in CR chromosome, of which FT two are intact, two have been disrupted by ISCro1 FT insertion, and two have frameshift mutated transposases" FT /note="this IS element is intact" FT repeat_region 776435..776452 FT /note="18 bp terminal inverted repeat of ISCro6, contains 3 FT mismatches" FT CDS 776524..777840 FT /transl_table=11 FT /locus_tag="ROD_07061" FT /product="ISCro6 transposase" FT /db_xref="GOA:D2TNL1" FT /db_xref="InterPro:IPR002559" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR024473" FT /db_xref="UniProtKB/TrEMBL:D2TNL1" FT /protein_id="CBG87481.1" FT /translation="MLSTWLDDTQTWAEPASLSCFQRAIPLEWISQVLDSTNKASIRKR FT KLPAELVVWLIVGMGLYRDRSITDVVTKLDLVLSSQEGETLAASSVARARQRLSDEPLR FT ELFTLTASHWTQQEDKDDLWHGLRLFAVDGTLFRTPDTPELAEHFEYIKHRPDRHTEYP FT MVRLCAMMSLRSRLIHGVKFGPANTGEVSYAKQLSPQAKSLTLFDRCYLSAELLINWQR FT RQQEAHWLVPLKGNTKYRIVETFAGGDHLVEMQVSPQARKQDSSLPENWQARLIEYEDE FT SGDYKGFITSLTEPGQYPAEALRYVYQERWSIENGYGELKQFQLSTATLLRSQKVSGIY FT QEIWGLLTAYNLIRMEMSQIAREAKVPPLRISFVMAMRLIQDELVWCSLGKPGTIPTKL FT KKMRENVKQFILPEKRKRPKKRTVRISKTQYPVHSKHLK" FT misc_feature 776908..777579 FT /locus_tag="ROD_07061" FT /note="HMMPfam hit to PF01609, Transposase, IS4-like, score FT 3.6e-20" FT /inference="protein motif:PFAM:PF01609" FT repeat_region complement(777832..777849) FT /note="18 bp terminal inverted repeat of ISCro6, contains 3 FT mismatches" FT repeat_region 777850..777860 FT /note="11 bp direct repeat flanking ISCro6" FT CDS 777944..779362 FT /transl_table=11 FT /gene="phrB" FT /locus_tag="ROD_07071" FT /product="deoxyribodipyrimidine photolyase" FT /db_xref="GOA:D2TNL2" FT /db_xref="InterPro:IPR002081" FT /db_xref="InterPro:IPR005101" FT /db_xref="InterPro:IPR006050" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR018394" FT /db_xref="UniProtKB/TrEMBL:D2TNL2" FT /protein_id="CBG87482.1" FT /translation="MSTHLVWFRCDLRLHDNLALAAACRSSTARVLALYISTPAQWTKH FT TMSPRQAAFIAAQLEALQQALADKGIPLLFEETADFDASVETVKAVCESHDVTHLFYNY FT QYELNERERDAAVEKALRKVICEGFDDSVILPPGSVMTGNHEMYKVFTPFKNAWLKRLK FT EGMPECAAAPKARDRAAVAPQQKITLNYPQQQFDRTLFPVDEKAVIAQLRQFCQQGAGE FT YEHQRDFPATDGTSRLSASLATGGLSPRQCLHRLLAEHPQALDGGAGSVWLNELIWREF FT YRHLMTRNPALCKHRPFIAWTDRVAWRDNAAHFQAWQEGKTGYPIVDAAMRQLNATGWM FT HNRLRMITASFLVKDLLIDWRKGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRI FT FNPTTQGEKFDRDGEFIRRWIPELREVPGKAIHEPWKWANSVGVTLSYPQPVVDHKQAR FT ATTLAAYEAARKGA" FT misc_feature 777947..778480 FT /gene="phrB" FT /locus_tag="ROD_07071" FT /note="HMMPfam hit to PF00875, DNA photolyase, N-terminal, FT score 1.7e-73" FT /inference="protein motif:PFAM:PF00875" FT misc_feature 778547..779350 FT /gene="phrB" FT /locus_tag="ROD_07071" FT /note="HMMPfam hit to PF03441, DNA photolyase, FAD-binding, FT score 7.1e-151" FT /inference="protein motif:PFAM:PF03441" FT misc_feature 778907..778945 FT /note="PS00394 DNA photolyases class 1 signature 1." FT /inference="protein motif:Prosite:PS00394" FT misc_feature 778967..779026 FT /note="PS00691 DNA photolyases class 1 signature 2." FT /inference="protein motif:Prosite:PS00691" FT CDS 779553..780494 FT /transl_table=11 FT /locus_tag="ROD_07081" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR006842" FT /db_xref="InterPro:IPR010106" FT /db_xref="UniProtKB/TrEMBL:D2TNL3" FT /protein_id="CBG87483.1" FT /translation="MMISTTSSPHDAVFKHFLSFPETARDFLDIHLPATLREICDLDTL FT KLESGSFIEENLRSRYSDVLWSLKTEDGDGYIYVVIEHQSTEDAHMAFRLMRYAMAAMQ FT RHLDAGHKMLPLVIPMLFYHGARSPYPWSLCWLDEFADPATARELYASAFPLVDITVVP FT DDEIMQHRRIALLELMQKHIRQRDLMGLIEQLTAVLLTGYANDTQLQVMFNYILQSGDD FT QRFNDFVREITQRLPQHKERLMTIAERLRLEGHSQGLQEGLLQGRQQGKEEGEREAALR FT IARAMLAQGSERSWVLLVTGLNEDDLVAAPGH" FT misc_feature 779556..780422 FT /locus_tag="ROD_07081" FT /note="HMMPfam hit to PF04754, Transposase (putative), FT YhgA-like, score 1.2e-211" FT /inference="protein motif:PFAM:PF04754" FT CDS complement(780547..782028) FT /transl_table=11 FT /locus_tag="ROD_07091" FT /product="putative oligopeptide transporter" FT /db_xref="GOA:D2TNL4" FT /db_xref="InterPro:IPR000109" FT /db_xref="InterPro:IPR005279" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR018456" FT /db_xref="InterPro:IPR020846" FT /db_xref="InterPro:IPR023777" FT /db_xref="UniProtKB/Swiss-Prot:D2TNL4" FT /protein_id="CBG87484.1" FT /translation="MKKASSQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDT FT HAYALFSAYCSLVYVTPILGGYLADKVLGNRMAVMLGAFLMAVGHLVLGASEIAPTFLY FT LSLAIIVCGYGLFKSNISCLLGELYQTEDPRRDGGFSLLYAAGNVGSIVAPIACGYVQE FT EYSWAMGFALAAIGMVAGLIIFLCGNRHFTHTKGVNKAALCARSFILPNWGWLLVLLTI FT APLAIAVLFWQEWAVYALIVATAIGLAVLGKIYRQAENQKQRKELGLIVTLTFFSMLFW FT AFAQQGGSSISLYIDRFVNRHIFGYSVPTAMFQSVNAFAVMLCGVVLAWLIKESIGGNR FT SVRIWGKFALGLGLMSAGFSILTLSARWSAAYGHSSMPLMIAGLAVMGFAELFIDPVAM FT SQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADRTSQSAFDASGAINYSINAYIDV FT FSEITWGALACVGLVLLIWLYQSLKFRNRPLAVGS" FT misc_feature complement(join(780592..780645,780733..780801, FT 780835..780903,780931..780999,781033..781101, FT 781177..781230,781267..781326,781339..781407, FT 781468..781536,781549..781617,781678..781737, FT 781747..781815,781828..781896,781924..781992)) FT /locus_tag="ROD_07091" FT /note="14 probable transmembrane helices predicted for FT ROD07091 by TMHMM2.0 at aa 13-35, 45-67, 72-94, 98-117, FT 138-160, 165-187, 208-230, 235-254, 267-284, 310-332, FT 344-366, 376-398, 410-432 and 462-479" FT misc_feature complement(780751..781803) FT /locus_tag="ROD_07091" FT /note="HMMPfam hit to PF00854, TGF-beta receptor, type I/II FT extracellular region, score 9e-98" FT /inference="protein motif:PFAM:PF00854" FT misc_feature complement(781573..781611) FT /note="PS01023 PTR2 family proton/oligopeptide symporters FT signature 2." FT /inference="protein motif:Prosite:PS01023" FT misc_feature complement(781762..781836) FT /note="PS01022 PTR2 family proton/oligopeptide symporters FT signature 1." FT /inference="protein motif:Prosite:PS01022" FT CDS 782295..783038 FT /transl_table=11 FT /locus_tag="ROD_07101" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR002678" FT /db_xref="UniProtKB/TrEMBL:D2TNL5" FT /protein_id="CBG87485.1" FT /translation="MKNTELEQLINEKLNSAAMSDYAPNGLQVEGKETVQTIVTGVTAS FT QALLDEAVRLQADAVIVHHGYFWKGESPVIRSMKRNRLKTLLANDINLYGWHLPLDAHP FT ELGNNAQLAALLGISVMGEIEPLVPWGELSMPVPGLELASWIEARLGRKPLWCGDTGPD FT TVTRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGG FT IRALSEWLTENTDLDVTFIDIPNPA" FT misc_feature 782322..783023 FT /locus_tag="ROD_07101" FT /note="HMMPfam hit to PF01784, NGG1p interacting factor 3, FT NIF3, score 1.4e-113" FT /inference="protein motif:PFAM:PF01784" FT CDS 783104..783760 FT /transl_table=11 FT /locus_tag="ROD_07111" FT /product="putative allophanate hydrolase subunit 1" FT /db_xref="GOA:D2TNL6" FT /db_xref="InterPro:IPR002130" FT /db_xref="InterPro:IPR003833" FT /db_xref="InterPro:IPR010016" FT /db_xref="UniProtKB/TrEMBL:D2TNL6" FT /protein_id="CBG87486.1" FT /translation="MQRARCYLLGETAVVLELEPPVTLASQKRIWRLTQRLVDMPNVVE FT AIPGMNNITVILREPQTLALDSIERLQRWWEESEALEPDSRDIAIPVIYGGEGGPDLAE FT VARHSGLSEKQVVELHASVEYVVWFLGFQPGFPYLGSLPEPLHTPRRAEPRLLVPAGSV FT GIGGSQTGIYPLPTPGGWQLIGQTSLKLFDPTHDEPVLLRPGDRVRFIPQKEGVC" FT misc_feature 783113..783709 FT /locus_tag="ROD_07111" FT /note="HMMPfam hit to PF02682, Allophanate hydrolase FT subunit 1, score 5.7e-134" FT /inference="protein motif:PFAM:PF02682" FT CDS 783754..784686 FT /transl_table=11 FT /locus_tag="ROD_07121" FT /product="putative allophanate hydrolase subunit 2" FT /db_xref="GOA:D2TNL7" FT /db_xref="InterPro:IPR003778" FT /db_xref="UniProtKB/TrEMBL:D2TNL7" FT /protein_id="CBG87487.1" FT /translation="MLKIIRAGMYTSVQDGGRHGFRQSGISHCGALDKPAMQIANLLVG FT NEADAPVLEITLGQLVVEFTVDGWFALTGAGCEATLDTHPVWTGWRLPVKAGQRLALQR FT PQHGMRSYLAVAGGIAVPEVMGSASTDLKVGIGGLAGRLLKDGDRLAIGKPARQFLGAQ FT GVKQLLWGNRLRALPGPEYHEFDPVSQEAFWRSPWYLSPQSNRMGYRLQGQPLKRTTGR FT ELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFV FT QCSLEEALKARQDQRRYLEQLSWRLNDEH" FT misc_feature 783820..784647 FT /locus_tag="ROD_07121" FT /note="HMMPfam hit to PF02626, Allophanate hydrolase FT subunit 2, score 1.5e-166" FT /inference="protein motif:PFAM:PF02626" FT CDS 784676..785410 FT /transl_table=11 FT /locus_tag="ROD_07131" FT /product="LamB/YcsF-family protein" FT /db_xref="GOA:D2TNL8" FT /db_xref="InterPro:IPR005501" FT /db_xref="InterPro:IPR011330" FT /db_xref="UniProtKB/TrEMBL:D2TNL8" FT /protein_id="CBG87488.1" FT /translation="MNIDLNADLGEGCASDGQLLTLISSANIACGFHAGDAQTMLASVR FT EALKNGVAIGAHPSFPDRENFGRSAMSLPPETVYAQTLYQVGALAAIAQAEGGVLRHVK FT PHGMLYNQAAKDPQLADAIAKAVHACDPALILVGLAGSELIRAGAHYGLATRQEVFADR FT GYQADGTLVPRSQPGALIEDEAQSLAQTLEMVERGRVKSITGEWASVVAQTVCLHGDGE FT HALAFARRLREAFAARDIAVTA" FT misc_feature 784679..785389 FT /locus_tag="ROD_07131" FT /note="HMMPfam hit to PF03746, LamB/YcsF, score 5.5e-148" FT /inference="protein motif:PFAM:PF03746" FT CDS 785485..786213 FT /transl_table=11 FT /locus_tag="ROD_07141" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR010374" FT /db_xref="UniProtKB/TrEMBL:D2TNL9" FT /protein_id="CBG87489.1" FT /translation="MGDAVTLWPLTGIAVIVVGFILRFNPVLVVIVAGIVTGLAAQMPI FT ATILEKLGEGFLNTRNLPFILLIPLAVIGLLERHGLKERAQAWIAKIRSATAGRLLVVY FT LFIREITAALGLTSLGGHPQMVRPLLAPMAEGAAEKNYGELPGAVRYRLRAMSAATDNV FT GLFFGEDIFVAFGAIIFMHNFMLESGGIQTEPLHIALWGIPTAICAFLIHGARLWRLDN FT YLQREMAKASAAQTVKGAAQ" FT misc_feature 785485..786168 FT /locus_tag="ROD_07141" FT /note="HMMPfam hit to PF06149, Protein of unknown function FT DUF969, score 7.8e-151" FT /inference="protein motif:PFAM:PF06149" FT misc_feature join(785497..785550,785563..785631,785674..785727, FT 785971..786039,786076..786144) FT /locus_tag="ROD_07141" FT /note="5 probable transmembrane helices predicted for FT ROD07141 by TMHMM2.0 at aa 5-22, 27-49, 64-81, 163-185 and FT 198-220" FT CDS 786210..787205 FT /transl_table=11 FT /locus_tag="ROD_07151" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR009323" FT /db_xref="UniProtKB/TrEMBL:D2TNM0" FT /protein_id="CBG87490.1" FT /translation="MNFQQSYLYWLAGIVLLLVAIMSWRDKANPRRLTTGLFWGVYGLL FT FLLGDWTYQLAGDKRTVNIAVGVAVVLMALIAGFGGVRLGSYHQRTREQREESATRLGN FT RLFYPALAIPVVTVIGVLMFNHIPGLQAGLFGPGNHATLVTLFSMTAGTLIGLGMAIKM FT THEKVHQPIQEARRLLDSIGWAFILPQILATLGLLFTAAGVGSGISYLTQAYFAVDSRF FT IAVAVYTIGMALLTMVMGNGFAAFPIVTAGIGIPILVLQHGGNPAVMAAIGMFSGYCGT FT LMTPMAANFNIVPAALLDLPDKNAVIKAQVPTGVLLLLVNVLLMYFLMFL" FT misc_feature join(786222..786281,786318..786371,786399..786467, FT 786528..786596,786624..786692,786753..786821, FT 786849..786917,786936..786989,787017..787085, FT 787146..787199) FT /locus_tag="ROD_07151" FT /note="10 probable transmembrane helices predicted for FT ROD07151 by TMHMM2.0 at aa 5-24, 37-54, 64-86, 107-129, FT 139-161, 182-204, 214-236, 243-260, 270-292 and 313-330" FT misc_feature 786228..787199 FT /locus_tag="ROD_07151" FT /note="HMMPfam hit to PF06166, Protein of unknown function FT DUF979, score 1.4e-149" FT /inference="protein motif:PFAM:PF06166" FT CDS 787215..787517 FT /pseudo FT /transl_table=11 FT /gene="pcp" FT /locus_tag="ROD_07161" FT /product="pyrrolidone-carboxylate peptidase (fragment)" FT /EC_number="3.4.19.3" FT /note="pseudogene, C-terminus missing, truncated by FT downstream deletion event" FT misc_feature 787218..787517 FT /gene="pcp" FT /locus_tag="ROD_07161" FT /note="HMMPfam hit to PF01470, Peptidase C15, pyroglutamyl FT peptidase I, score 2.2e-15" FT /inference="protein motif:PFAM:PF01470" FT CDS 787519..787881 FT /pseudo FT /transl_table=11 FT /gene="nei" FT /locus_tag="ROD_07162" FT /product="Endonuclease VIII (fragment)" FT /note="pseudogene, N-terminus missing, truncated by FT upstream deletion event" FT misc_feature 787519..787755 FT /gene="nei" FT /locus_tag="ROD_07162" FT /note="HMMPfam hit to PF06831, Formamidopyrimidine-DNA FT glycolase, H2TH DNA binding, score 3.6e-18" FT /inference="protein motif:PFAM:PF06831" FT misc_feature 787795..787881 FT /gene="nei" FT /locus_tag="ROD_07162" FT /note="HMMPfam hit to PF06827, Formamidopyrimidine-DNA FT glycolase, C-terminal, score 0.00041" FT /inference="protein motif:PFAM:PF06827" FT CDS complement(787928..788974) FT /transl_table=11 FT /gene="abrB" FT /locus_tag="ROD_07171" FT /product="putative ammonia monooxygenase" FT /db_xref="GOA:D2TPC4" FT /db_xref="InterPro:IPR007820" FT /db_xref="InterPro:IPR017516" FT /db_xref="UniProtKB/TrEMBL:D2TPC4" FT /protein_id="CBG87493.1" FT /translation="MPFLQWGLLFLASLLLSLLFLHLHLPAALLLGPMIAGIVFSLRGI FT ALTLPRSAFLAAQAILGCMIAQNLSSSILTTLAVNWPVVLAVLLVTLISSAVVGWLLVR FT YSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTRLILG FT DSAEAVSQQVEWFPPLSANLLYTLLLAVTAGVAGRLLRIPSGTMLVPMLAGALLHSGGM FT MVIELPEWLLAMAYMAIGWRIGLGFDKQVFFMALRPLPQILASVFTLMAICAAMAWGLA FT HYMQIDFMTAYLATSPGGLDTVAVIAAGSNADMALIMAMQTLRLFSILLTGPAVARFIS FT TRAPRKPL" FT misc_feature complement(787943..788890) FT /gene="abrB" FT /locus_tag="ROD_07171" FT /note="HMMPfam hit to PF05145, Putative ammonia FT monooxygenase, score 2.6e-133" FT /inference="protein motif:PFAM:PF05145" FT misc_feature complement(join(787967..788035,788045..788113, FT 788132..788200,788294..788362,788375..788443, FT 788486..788545,788666..788734,788747..788815, FT 788849..788917)) FT /gene="abrB" FT /locus_tag="ROD_07171" FT /note="9 probable transmembrane helices predicted for FT ROD07171 by TMHMM2.0 at aa 20-42, 54-76, 81-103, 144-163, FT 178-200, 205-227, 259-281, 288-310 and 314-336" FT misc_feature complement(788786..788818) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT sig_peptide complement(788906..788974) FT /gene="abrB" FT /locus_tag="ROD_07171" FT /note="Signal peptide predicted for ROD07171 by SignalP 2.0 FT HMM (Signal peptide probability 0.884) with cleavage site FT probability 0.440 between residues 23 and 24" FT CDS complement(789111..790394) FT /transl_table=11 FT /gene="gltA" FT /locus_tag="ROD_07181" FT /product="citrate synthase" FT /EC_number="2.3.3.1" FT /db_xref="GOA:D2TPC5" FT /db_xref="InterPro:IPR002020" FT /db_xref="InterPro:IPR010953" FT /db_xref="InterPro:IPR016141" FT /db_xref="InterPro:IPR016142" FT /db_xref="InterPro:IPR016143" FT /db_xref="InterPro:IPR019810" FT /db_xref="InterPro:IPR024176" FT /db_xref="UniProtKB/TrEMBL:D2TPC5" FT /protein_id="CBG87494.1" FT /translation="MADTKAKLTLNGDAAIELDVLKGTLGQDVIDIRSLGSKGMFTFDP FT GFTSTASCESKITFIDGDEGILLHRGFPIDQLATESNYLEVCYILLYGEKPTQAEYDEF FT RTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAF FT RLLSKMPTMAAMCYKYSIGQPFIYPRNDLSYAGNFLRMMFATPCEEYEVNPVLERAMDR FT ILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISS FT VQHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVA FT MELEHIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWNEM FT HSEGMKIARPRQLYTGYEQRDFKSDIKR" FT misc_feature complement(789168..790259) FT /gene="gltA" FT /locus_tag="ROD_07181" FT /note="HMMPfam hit to PF00285, Citrate synthase, score FT 1e-234" FT /inference="protein motif:PFAM:PF00285" FT misc_feature complement(789450..789488) FT /note="PS00480 Citrate synthase signature." FT /inference="protein motif:Prosite:PS00480" FT CDS 791213..791617 FT /transl_table=11 FT /gene="sdhC" FT /locus_tag="ROD_07191" FT /product="succinate dehydrogenase cytochrome b-556 subunit" FT /db_xref="GOA:D2TPC6" FT /db_xref="InterPro:IPR000701" FT /db_xref="InterPro:IPR014314" FT /db_xref="InterPro:IPR014361" FT /db_xref="InterPro:IPR018495" FT /db_xref="UniProtKB/TrEMBL:D2TPC6" FT /protein_id="CBG87495.1" FT /translation="MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVA FT VGILLWLLGTSLSSPEGFQQASAIMGSFFVKFIMWGILTALAYHVVGGVRHMFMDFGYL FT EETFEAGQRSAKIAFVITVVLSLLAGVLVW" FT misc_feature 791240..791593 FT /gene="sdhC" FT /locus_tag="ROD_07191" FT /note="HMMPfam hit to PF01127, Succinate dehydrogenase, FT cytochrome b subunit, score 2.2e-44" FT /inference="protein motif:PFAM:PF01127" FT misc_feature 791252..791326 FT /note="PS01000 Succinate dehydrogenase cytochrome b subunit FT signature 1." FT /inference="protein motif:Prosite:PS01000" FT misc_feature join(791306..791374,791417..791485,791561..791611) FT /gene="sdhC" FT /locus_tag="ROD_07191" FT /note="3 probable transmembrane helices predicted for FT ROD07191 by TMHMM2.0 at aa 32-54, 69-91 and 117-133" FT misc_feature 791477..791518 FT /note="PS01001 Succinate dehydrogenase cytochrome b subunit FT signature 2." FT /inference="protein motif:Prosite:PS01001" FT CDS 791611..791958 FT /transl_table=11 FT /gene="sdhD" FT /locus_tag="ROD_07201" FT /product="succinate dehydrogenase hydrophobic membrane FT anchor protein" FT /db_xref="GOA:D2TPC7" FT /db_xref="InterPro:IPR000701" FT /db_xref="InterPro:IPR014312" FT /db_xref="UniProtKB/TrEMBL:D2TPC7" FT /protein_id="CBG87496.1" FT /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGNLTW FT EAWTGFFSSAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLAIRLGLQLAIVVALVVY FT VIYGFVVVWGV" FT misc_feature join(791656..791724,791752..791820,791881..791949) FT /gene="sdhD" FT /locus_tag="ROD_07201" FT /note="3 probable transmembrane helices predicted for FT ROD07201 by TMHMM2.0 at aa 16-38, 48-70 and 91-113" FT CDS 791958..793724 FT /transl_table=11 FT /gene="sdhA" FT /locus_tag="ROD_07211" FT /product="succinate dehydrogenase flavoprotein subunit" FT /db_xref="GOA:D2TPC8" FT /db_xref="InterPro:IPR003952" FT /db_xref="InterPro:IPR003953" FT /db_xref="InterPro:IPR004112" FT /db_xref="InterPro:IPR011281" FT /db_xref="InterPro:IPR014006" FT /db_xref="InterPro:IPR015939" FT /db_xref="UniProtKB/TrEMBL:D2TPC8" FT /protein_id="CBG87497.1" FT /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH FT TVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGL FT PFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSE FT WYALDLVKNADGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDG FT VGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAK FT DLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHV FT DPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNAQGEDVVIPGLFAVGEIACVSVHGANR FT LGGNSLLDLVVFGRAAGLHLQESIAEQGALRDATEDEIDASLSRLNRWNNNRDGEDPVA FT IRKALQECMQHNFSVFREGDAMAKGLEQLKAIRERLKNARLDDTSSEFNTQRVECLELD FT NLMETAYATAVSANFRTESRGAHSRFDFPERDDENWLCHSLYLPETESMTRRQVNMEPK FT LRPAFPPKIRTY" FT misc_feature 791982..793172 FT /gene="sdhA" FT /locus_tag="ROD_07211" FT /note="HMMPfam hit to PF00890, Fumarate reductase/succinate FT dehydrogenase flavoprotein, N-terminal, score 1.2e-171" FT /inference="protein motif:PFAM:PF00890" FT misc_feature 792084..792113 FT /note="PS00504 Fumarate reductase / succinate dehydrogenase FT FAD-binding site." FT /inference="protein motif:Prosite:PS00504" FT misc_feature 793335..793721 FT /gene="sdhA" FT /locus_tag="ROD_07211" FT /note="HMMPfam hit to PF02910, Fumarate reductase/succinate FT dehydrogenase flavoprotein, C-terminal, score 6.4e-69" FT /inference="protein motif:PFAM:PF02910" FT CDS 793740..794456 FT /transl_table=11 FT /gene="sdhB" FT /locus_tag="ROD_07221" FT /product="succinate dehydrogenase iron-sulfur protein" FT /db_xref="GOA:D2TPC9" FT /db_xref="InterPro:IPR001041" FT /db_xref="InterPro:IPR004489" FT /db_xref="InterPro:IPR009051" FT /db_xref="InterPro:IPR012285" FT /db_xref="InterPro:IPR012675" FT /db_xref="InterPro:IPR017896" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:D2TPC9" FT /protein_id="CBG87498.1" FT /translation="MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKEK FT DPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQLGKKIVIRPLPGLPVIRDLV FT VDMGQFYAQYEKIKPYLLNNGQNPPAREHLQTPEQREKLDGLYECILCACCSTSCPSFW FT WSPDKFIGPAGLLAAYRFLIDSRDTETDSRLEGMSDAFSVFRCHSIMNCVSVCPKGLNP FT TRAIGHIKSMLLQRSA" FT misc_feature 794184..794219 FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT /inference="protein motif:Prosite:PS00198" FT CDS 794735..797542 FT /transl_table=11 FT /gene="sucA" FT /locus_tag="ROD_07231" FT /product="2-oxoglutarate dehydrogenase E1 component" FT /EC_number="1.2.4.2" FT /db_xref="GOA:D2TPD0" FT /db_xref="InterPro:IPR001017" FT /db_xref="InterPro:IPR005475" FT /db_xref="InterPro:IPR011603" FT /db_xref="UniProtKB/TrEMBL:D2TPD0" FT /protein_id="CBG87499.1" FT /translation="MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTF FT QQLPGTGVKPDQLHSKTREYFRRLAKDASRYSSSISDPDANVKQVKVLQLINAYRFRGH FT QHANLDPLGLWKQDTVADLDPSFHDLTEADFQETFNVGSFAIGKDTMKLGDLIDALRQT FT YCGSIGAEYMHITSTEEKRWIQQRIESVAGHATFSVEEKKRFLGELTAAEGLERYLGAK FT FPGAKRFSLEGGDALIPMLKEMIRHAGSSGTREVVLGMAHRGRLNVLINVLGKKPQDLF FT DEFAGKHKEHLGTGDVKYHMGFSSDIETEGGLVHLALAFNPSHLEIVSPVVMGSVRARL FT DRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTS FT NPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYR FT RHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEADKVATLEDATEMVNLYRDALDA FT GECVVKEWRPMNMHSFTWSPYLNHDWEEAYPNKVEMKRLQELAKRISTVPEAVEMQSRV FT AKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQ FT SNGSTYTPLQHVHNGQGTFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANG FT AQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVP FT STPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLNELANGAFLPAIGEIDDID FT PKGVKRVVMCSGKVYYDLLEQRRKNDQKDVAIIRIEQLYPFPHQAMQDVLKQYAHVHDF FT VWCQEEPLNQGAWYCSQHHFREVIPFGSALRYAGRPASASPAVGYMSVHQKQQQDLVND FT ALNVD" FT misc_feature 794876..794893 FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT /inference="protein motif:Prosite:PS00343" FT misc_feature 795353..796327 FT /gene="sucA" FT /locus_tag="ROD_07231" FT /note="HMMPfam hit to PF00676, Dehydrogenase, E1 component, FT score 1.5e-29" FT /inference="protein motif:PFAM:PF00676" FT misc_feature 796505..797095 FT /gene="sucA" FT /locus_tag="ROD_07231" FT /note="HMMPfam hit to PF02779, Transketolase, central FT region, score 1.8e-76" FT /inference="protein motif:PFAM:PF02779" FT CDS 797557..798777 FT /transl_table=11 FT /gene="sucB" FT /locus_tag="ROD_07241" FT /product="dihydrolipoamide succinyltransferase component FT (E2)" FT /EC_number="2.3.1.61" FT /db_xref="GOA:D2TPD1" FT /db_xref="InterPro:IPR000089" FT /db_xref="InterPro:IPR001078" FT /db_xref="InterPro:IPR003016" FT /db_xref="InterPro:IPR004167" FT /db_xref="InterPro:IPR006255" FT /db_xref="InterPro:IPR011053" FT /db_xref="InterPro:IPR023213" FT /db_xref="UniProtKB/TrEMBL:D2TPD1" FT /protein_id="CBG87500.1" FT /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKV FT VLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQA FT SLEEQNNDALSPAIRRLLAEHNLEASVIKGTGVGGRITREDVEKHLAKAPAKEETKAPE FT AAPTAQPALGARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYG FT EAFEKRHGIRLGFMSFYVKAVVEALKRFPEVNASIDGDDVVYHNYFDVSMAVSTPRGLV FT TPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVDDLTGGNFTITNGGVFGSLMSTPIIN FT PPQSAILGMHAIKDRPMAVDGKVEILPMMYLALSYDHRLIDGRESVGFLVAIKELLEDP FT TRLLLDV" FT misc_feature 797566..797787 FT /gene="sucB" FT /locus_tag="ROD_07241" FT /note="HMMPfam hit to PF00364, Biotin/lipoyl attachment, FT score 2.5e-21" FT /inference="protein motif:PFAM:PF00364" FT misc_feature 797638..797727 FT /note="PS00189 2-oxo acid dehydrogenases acyltransferase FT component lipoyl binding site." FT /inference="protein motif:Prosite:PS00189" FT misc_feature 797896..798006 FT /gene="sucB" FT /locus_tag="ROD_07241" FT /note="HMMPfam hit to PF02817, E3 binding, score 4.7e-17" FT /inference="protein motif:PFAM:PF02817" FT misc_feature 798076..798768 FT /gene="sucB" FT /locus_tag="ROD_07241" FT /note="HMMPfam hit to PF00198, Catalytic domain of FT components of various dehydrogenase complexes, score FT 1.7e-142" FT /inference="protein motif:PFAM:PF00198" FT CDS 798918..800084 FT /transl_table=11 FT /gene="sucC" FT /locus_tag="ROD_07251" FT /product="succinyl-CoA synthetase beta chain" FT /EC_number="6.2.1.5" FT /db_xref="GOA:D2TPD2" FT /db_xref="InterPro:IPR005809" FT /db_xref="InterPro:IPR005811" FT /db_xref="InterPro:IPR011761" FT /db_xref="InterPro:IPR013650" FT /db_xref="InterPro:IPR013815" FT /db_xref="InterPro:IPR013816" FT /db_xref="InterPro:IPR016102" FT /db_xref="InterPro:IPR017866" FT /db_xref="UniProtKB/TrEMBL:D2TPD2" FT /protein_id="CBG87501.1" FT /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVV FT KCQVHAGGRGKAGGVKVVKSKEEIRAFAEHWLGKRLVTYQTDANGQPVNQILVEAATDI FT DKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLAGPMPYQGREL FT AFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNA FT LFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGG FT EPANFLDVGGGATKERVTEAFKIILSDDNVKAVLVNIFGGIVRCDLIADGIIGAVEEVG FT VNVPVVVRLEGNNAELGAKKLADSGLNIIAAKSLTDAAQQVVAAVEGK" FT misc_feature 798921..799526 FT /gene="sucC" FT /locus_tag="ROD_07251" FT /note="HMMPfam hit to PF08442, ATP-grasp fold, succinyl-CoA FT synthetase-type, score 3.1e-146" FT /inference="protein motif:PFAM:PF08442" FT misc_feature 798960..798992 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 799653..800063 FT /gene="sucC" FT /locus_tag="ROD_07251" FT /note="HMMPfam hit to PF00549, ATP-citrate FT lyase/succinyl-CoA ligase, score 2.4e-81" FT /inference="protein motif:PFAM:PF00549" FT misc_feature 799686..799760 FT /note="PS01217 ATP-citrate lyase / succinyl-CoA ligases FT family signature 3." FT /inference="protein motif:Prosite:PS01217" FT CDS 800084..800953 FT /transl_table=11 FT /gene="sucD" FT /locus_tag="ROD_07261" FT /product="succinyl-CoA synthetase alpha chain" FT /db_xref="GOA:D2TPD3" FT /db_xref="InterPro:IPR003781" FT /db_xref="InterPro:IPR005810" FT /db_xref="InterPro:IPR005811" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR016102" FT /db_xref="InterPro:IPR017440" FT /db_xref="UniProtKB/TrEMBL:D2TPD3" FT /protein_id="CBG87502.1" FT /translation="MSVLIDKNTKVICQGFTGSQGTFHSEQAIAYGTQMVGGVTPGKGG FT TTHLGLPVFNTVREAVEATGAIATVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLD FT MLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIMPGHIHKPGKVGIVSRSGTLTYEAVK FT QTTDYGFGQSTCVGIGGDPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEAAAYI FT KDHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIG FT EALKAVIK" FT misc_feature 800093..800383 FT /gene="sucD" FT /locus_tag="ROD_07261" FT /note="HMMPfam hit to PF02629, CoA-binding, score 2.1e-49" FT /inference="protein motif:PFAM:PF02629" FT misc_feature 800480..800905 FT /gene="sucD" FT /locus_tag="ROD_07261" FT /note="HMMPfam hit to PF00549, ATP-citrate FT lyase/succinyl-CoA ligase, score 1.9e-64" FT /inference="protein motif:PFAM:PF00549" FT misc_feature 800537..800626 FT /note="PS01216 ATP-citrate lyase / succinyl-CoA ligases FT family signature 1." FT /inference="protein motif:Prosite:PS01216" FT misc_feature 800789..800830 FT /note="PS00399 ATP-citrate lyase / succinyl-CoA ligases FT family active site." FT /inference="protein motif:Prosite:PS00399" FT CDS 801845..803413 FT /transl_table=11 FT /gene="cydA" FT /locus_tag="ROD_07271" FT /product="cytochrome d ubiquinol oxidase subunit 1" FT /EC_number="1.10.3.-" FT /db_xref="GOA:D2TPD4" FT /db_xref="InterPro:IPR002585" FT /db_xref="UniProtKB/TrEMBL:D2TPD4" FT /protein_id="CBG87503.1" FT /translation="MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGK FT QIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAF FT FLESTFVGLFFFGWDRLGKVQHMAVTWLVALGSNLSALWILVANGWMQNPIASDFNFET FT MRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAYYLLKGRDIAFAKRSFAI FT AASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQDSQE FT NKFAIQIPYALGIIATRSVDTPVIGLKDLMVQHEERIRNGMKAYQLLEQLRAGSTDQAV FT RDQFNSMKKDLGYGLLLKRYTPNVSDATEAQIQQATKDSIPRVAPLYFAFRIMVACGFL FT LLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLP FT TAVANSSLRPGDLLFSMFLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSTVA FT SQPAR" FT misc_feature 801863..803377 FT /gene="cydA" FT /locus_tag="ROD_07271" FT /note="HMMPfam hit to PF01654, Cytochrome bd ubiquinol FT oxidase, subunit I, score 0" FT /inference="protein motif:PFAM:PF01654" FT misc_feature join(801902..801970,802004..802072,802130..802198, FT 802232..802300,802397..802465,802499..802558, FT 803003..803071,803105..803173,803258..803326) FT /gene="cydA" FT /locus_tag="ROD_07271" FT /note="9 probable transmembrane helices predicted for FT ROD07271 by TMHMM2.0 at aa 20-42, 54-76, 96-118, 130-152, FT 185-207, 219-238, 387-409, 421-443 and 472-494" FT CDS 803429..804568 FT /transl_table=11 FT /gene="cydB" FT /locus_tag="ROD_07281" FT /product="cytochrome d ubiquinol oxidase subunit 2" FT /EC_number="1.10.3.-" FT /db_xref="GOA:D2TPD5" FT /db_xref="InterPro:IPR003317" FT /db_xref="UniProtKB/TrEMBL:D2TPD5" FT /protein_id="CBG87504.1" FT /translation="MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTE FT RRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGF FT DYRSKIEDTRWRNMWDWGVFVGSFVPPLVIGVAFGNLLQGVQFHVDEYLRLYYTGNFFQ FT LLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRARATSQIAALVTLVCFALAGVWV FT VYGIDGYVVTSVIDHHAASNPLTKEVAREAGAWLVNFNNAPILWLVPALGVVLPLLTIL FT TSRMEKGAWAFLFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQMTLNLM FT TWVAVVFVPIILIYTSWCYWKMFGRITREHIESNTHSLY" FT misc_feature 803441..804529 FT /gene="cydB" FT /locus_tag="ROD_07281" FT /note="HMMPfam hit to PF02322, Cytochrome bd ubiquinol FT oxidase, subunit II, score 1.6e-224" FT /inference="protein motif:PFAM:PF02322" FT misc_feature join(803447..803500,803657..803725,803792..803860, FT 803903..803971,804032..804100,804212..804271, FT 804305..804373,804440..804508) FT /gene="cydB" FT /locus_tag="ROD_07281" FT /note="8 probable transmembrane helices predicted for FT ROD07281 by TMHMM2.0 at aa 7-24, 77-99, 122-144, 159-181, FT 202-224, 262-281, 293-315 and 338-360" FT misc_feature 804299..804331 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 804584..804697 FT /transl_table=11 FT /gene="ybgT" FT /locus_tag="ROD_07282" FT /product="putative exported protein" FT /db_xref="InterPro:IPR011724" FT /db_xref="InterPro:IPR012994" FT /db_xref="UniProtKB/TrEMBL:D2TPD6" FT /protein_id="CBG87505.1" FT /translation="MWYFAWILGTLLACAFGIITALALEHVEASKAGQEEH" FT misc_feature 804584..804667 FT /gene="ybgT" FT /locus_tag="ROD_07282" FT /note="HMMPfam hit to PF08173, Membrane bound YbgT-like, FT score 4.9e-14" FT /inference="protein motif:PFAM:PF08173" FT sig_peptide 804584..804652 FT /gene="ybgT" FT /locus_tag="ROD_07282" FT /note="Signal peptide predicted for ROD07282 by SignalP 2.0 FT HMM (Signal peptide probability 0.985) with cleavage site FT probability 0.695 between residues 23 and 24" FT misc_feature 804587..804655 FT /gene="ybgT" FT /locus_tag="ROD_07282" FT /note="1 probable transmembrane helix predicted for FT ROD07282 by TMHMM2.0 at aa 2-24" FT misc_feature 804593..804625 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 804697..804990 FT /transl_table=11 FT /locus_tag="ROD_07291" FT /product="putative exported protein" FT /db_xref="InterPro:IPR011846" FT /db_xref="UniProtKB/TrEMBL:D2TPD7" FT /protein_id="CBG87506.1" FT /translation="MTNLIAMFYNAMDKRPLRALSLLMALLLAGCMFWDPSRFAARTSS FT LAIWQGFLLMWAVCAGIIHGVGFRPRAARWQGIFSPLLADIVLIAGLLFFFF" FT sig_peptide 804697..804816 FT /locus_tag="ROD_07291" FT /note="Signal peptide predicted for ROD07291 by SignalP 2.0 FT HMM (Signal peptide probability 0.907) with cleavage site FT probability 0.690 between residues 40 and 41" FT misc_feature join(804751..804804,804832..804900,804925..804984) FT /locus_tag="ROD_07291" FT /note="3 probable transmembrane helices predicted for FT ROD07291 by TMHMM2.0 at aa 19-36, 46-68 and 77-96" FT misc_feature 804757..804789 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 805265..805669 FT /transl_table=11 FT /locus_tag="ROD_07301" FT /product="acyl-CoA thioester hydrolase" FT /EC_number="3.1.2.-" FT /db_xref="GOA:D2TPD8" FT /db_xref="InterPro:IPR006683" FT /db_xref="InterPro:IPR006684" FT /db_xref="InterPro:IPR008272" FT /db_xref="InterPro:IPR014166" FT /db_xref="UniProtKB/TrEMBL:D2TPD8" FT /protein_id="CBG87507.1" FT /translation="MSQYIFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHF FT SQQALLEERVAFVVRKMTLEYYAPARLDDMLEVQSEITSMRGTSMVFTQRIVNAENTVL FT NEAEVLIVCVDPLKMKPRALPKSIVAEFKQ" FT misc_feature 805295..805348 FT /note="PS01328 4-hydroxybenzoyl-CoA thioesterase family FT active site." FT /inference="protein motif:Prosite:PS01328" FT misc_feature 805322..805579 FT /locus_tag="ROD_07301" FT /note="HMMPfam hit to PF03061, Thioesterase superfamily, FT score 1.2e-19" FT /inference="protein motif:PFAM:PF03061" FT CDS 805666..806358 FT /transl_table=11 FT /gene="tolQ" FT /locus_tag="ROD_07311" FT /product="colicin import protein" FT /db_xref="GOA:D2TPD9" FT /db_xref="InterPro:IPR002898" FT /db_xref="InterPro:IPR014163" FT /db_xref="UniProtKB/TrEMBL:D2TPD9" FT /protein_id="CBG87508.1" FT /translation="MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAA FT AREAEAFEDKFWSGIELSRLYQESQGRRDSLAGTEQIFYSGFKEFARLHRANSHAPEAI FT VEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQAT FT LQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQAF FT TVSESNKG" FT misc_feature join(805708..805776,806062..806130,806173..806241) FT /gene="tolQ" FT /locus_tag="ROD_07311" FT /note="3 probable transmembrane helices predicted for FT ROD07311 by TMHMM2.0 at aa 15-37, 133-155 and 170-192" FT misc_feature 805882..806298 FT /gene="tolQ" FT /locus_tag="ROD_07311" FT /note="HMMPfam hit to PF01618, MotA/TolQ/ExbB proton FT channel, score 4e-63" FT /inference="protein motif:PFAM:PF01618" FT CDS 806362..806790 FT /transl_table=11 FT /gene="tolR" FT /locus_tag="ROD_07321" FT /product="colicin import protein" FT /db_xref="GOA:D2TPE0" FT /db_xref="InterPro:IPR003400" FT /db_xref="InterPro:IPR014168" FT /db_xref="UniProtKB/TrEMBL:D2TPE0" FT /protein_id="CBG87509.1" FT /translation="MARSRGRGRRDLKSEINIVPLLDVLLVLLLIFMATAPIITQSVEV FT DLPDATESQAVSSNDNPPVIIEVSGVGQYSVVVEKDRMDQLPPEQVVAEAKSRLASNPK FT TVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI" FT misc_feature 806386..806787 FT /gene="tolR" FT /locus_tag="ROD_07321" FT /note="HMMPfam hit to PF02472, Biopolymer transport protein FT ExbD/TolR, score 2.1e-15" FT /inference="protein motif:PFAM:PF02472" FT misc_feature 806410..806478 FT /gene="tolR" FT /locus_tag="ROD_07321" FT /note="1 probable transmembrane helix predicted for FT ROD07321 by TMHMM2.0 at aa 17-39" FT CDS 806853..808097 FT /transl_table=11 FT /gene="tolA" FT /locus_tag="ROD_07331" FT /product="colicin import protein" FT /db_xref="GOA:D2TPE1" FT /db_xref="InterPro:IPR014161" FT /db_xref="UniProtKB/TrEMBL:D2TPE1" FT /protein_id="CBG87510.1" FT /translation="MSKATEQNDKLKRAIIISAVLHVILFAVLIWSSFDEHIEASAGGG FT GGSSIDAVMVDPGAVVQQYERQQQQQSSAQRAKEQREKLAQQQAEELREKQAAEQERLK FT QIEKERLAAQEQQKQAEAEAKKALEQKQQAEEAAKKAAAEAKAKADAQAKEAAEAAKKA FT AADAQKKAEAEAAKAAADAKKKAEAEAAKAAADAKKKAEAEAAKAAADAKKKAEAEAAK FT QAQAEAAKKAAAEKAAAEKKAAAEKAAAEKKAAAEKAAADKKAAAAKKAAAEKAAAEKA FT AAASGVDDLLGDLSSGKNAPKTGGGAKGNNVSPAGSGNTKNNGASGADISNYAGQIKSA FT IESKFYDASSYAGKTCTLRIKLAPDGLLLDIQSEGGDPALCQAALAAARQAKIPKPPSQ FT AVYEVFKNAPLDFKP" FT misc_feature 806865..808094 FT /gene="tolA" FT /locus_tag="ROD_07331" FT /note="HMMPfam hit to PF06519, Tol-Pal system, TolA, score FT 2.5e-188" FT /inference="protein motif:PFAM:PF06519" FT misc_feature 806889..806957 FT /gene="tolA" FT /locus_tag="ROD_07331" FT /note="1 probable transmembrane helix predicted for FT ROD07331 by TMHMM2.0 at aa 13-35" FT misc_feature 807894..807917 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 808230..809522 FT /transl_table=11 FT /gene="tolB" FT /locus_tag="ROD_07341" FT /product="colicin import protein" FT /db_xref="GOA:D2TPE2" FT /db_xref="InterPro:IPR007195" FT /db_xref="InterPro:IPR011659" FT /db_xref="InterPro:IPR014167" FT /db_xref="InterPro:IPR015943" FT /db_xref="UniProtKB/TrEMBL:D2TPE2" FT /protein_id="CBG87511.1" FT /translation="MKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWA FT GPGAAPEDIGGIVGADLRNSGKFNPLDRSRLPQQPGTAQEVQPAAWSALGIDAVVIGQV FT TPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF FT RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESG FT RSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIR FT QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNVNGGAPQRITWEGSQNQDADVS FT SDGKFMVMVSSNNGQQHIAKQDLVAGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGS FT VLNLVSTDGRFKARLPATDGQVKFPAWSPYL" FT sig_peptide 808230..808292 FT /gene="tolB" FT /locus_tag="ROD_07341" FT /note="Signal peptide predicted for ROD07341 by SignalP 2.0 FT HMM (Signal peptide probability 0.995) with cleavage site FT probability 0.993 between residues 21 and 22" FT misc_feature 808245..808748 FT /gene="tolB" FT /locus_tag="ROD_07341" FT /note="HMMPfam hit to PF04052, TolB, N-terminal, score FT 1.1e-86" FT /inference="protein motif:PFAM:PF04052" FT misc_feature 808803..808913 FT /gene="tolB" FT /locus_tag="ROD_07341" FT /note="HMMPfam hit to PF07676, WD40-like Beta Propeller, FT score 0.48" FT /inference="protein motif:PFAM:PF07676" FT misc_feature 808938..809045 FT /gene="tolB" FT /locus_tag="ROD_07341" FT /note="HMMPfam hit to PF07676, WD40-like Beta Propeller, FT score 1.6e-06" FT /inference="protein motif:PFAM:PF07676" FT misc_feature 809067..809177 FT /gene="tolB" FT /locus_tag="ROD_07341" FT /note="HMMPfam hit to PF07676, WD40-like Beta Propeller, FT score 2.2e-06" FT /inference="protein motif:PFAM:PF07676" FT misc_feature 809199..809309 FT /gene="tolB" FT /locus_tag="ROD_07341" FT /note="HMMPfam hit to PF07676, WD40-like Beta Propeller, FT score 4.1" FT /inference="protein motif:PFAM:PF07676" FT misc_feature 809331..809444 FT /gene="tolB" FT /locus_tag="ROD_07341" FT /note="HMMPfam hit to PF07676, WD40-like Beta Propeller, FT score 0.057" FT /inference="protein motif:PFAM:PF07676" FT CDS 809557..810078 FT /transl_table=11 FT /gene="pal" FT /locus_tag="ROD_07351" FT /product="peptidoglycan-associated lipoprotein" FT /db_xref="GOA:D2TPE3" FT /db_xref="InterPro:IPR006664" FT /db_xref="InterPro:IPR006665" FT /db_xref="InterPro:IPR006690" FT /db_xref="InterPro:IPR014169" FT /db_xref="UniProtKB/TrEMBL:D2TPE3" FT /protein_id="CBG87512.1" FT /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDA FT NGSGGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVT FT VEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAY FT AKNRRAVLVY" FT sig_peptide 809557..809634 FT /gene="pal" FT /locus_tag="ROD_07351" FT /note="Signal peptide predicted for ROD07351 by SignalP 2.0 FT HMM (Signal peptide probability 0.961) with cleavage site FT probability 0.451 between residues 26 and 27" FT misc_feature 809590..809622 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 809770..810057 FT /gene="pal" FT /locus_tag="ROD_07351" FT /note="HMMPfam hit to PF00691, Outer membrane protein, FT OmpA/MotB, C-terminal, score 6.8e-50" FT /inference="protein motif:PFAM:PF00691" FT misc_feature 809869..810003 FT /note="PS01068 OmpA-like domain." FT /inference="protein motif:Prosite:PS01068" FT CDS 810088..810879 FT /transl_table=11 FT /locus_tag="ROD_07361" FT /product="putative tetratricopeptide repeat exported FT protein" FT /db_xref="GOA:D2TPE4" FT /db_xref="InterPro:IPR011990" FT /db_xref="InterPro:IPR013026" FT /db_xref="InterPro:IPR014162" FT /db_xref="UniProtKB/TrEMBL:D2TPE4" FT /protein_id="CBG87513.1" FT /translation="MSSNFRHHVLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVIQL FT ERISNAHSQLLTQLQQQLSDNQADIDSLRGQIQESQYQLNQVVERQKQILLQIESLSSG FT GAAAQSAGGEQSGAAAGAATATPDAPASGAVPVQSGDANTDYNAAIALVQDKSRQDDAI FT AAFQNFIKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK FT VGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLGAM" FT sig_peptide 810088..810165 FT /locus_tag="ROD_07361" FT /note="Signal peptide predicted for ROD07361 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.992 between residues 26 and 27" FT misc_feature 810625..810726 FT /locus_tag="ROD_07361" FT /note="HMMPfam hit to PF07719, Tetratricopeptide TPR2, FT score 0.003" FT /inference="protein motif:PFAM:PF07719" FT misc_feature 810736..810837 FT /locus_tag="ROD_07361" FT /note="HMMPfam hit to PF07719, Tetratricopeptide TPR2, FT score 0.0039" FT /inference="protein motif:PFAM:PF07719" FT tRNA 811043..811115 FT /locus_tag="ROD_t14" FT /product="transfer RNA-Lys" FT /anticodon=(pos:811076..811078,aa:Lys) FT /note="tRNA Lys anticodon TTT, Cove score 87.80" FT tRNA 811261..811333 FT /locus_tag="ROD_t15" FT /product="transfer RNA-Lys" FT /anticodon=(pos:811294..811296,aa:Lys) FT /note="tRNA Lys anticodon TTT, Cove score 87.80" FT tRNA 811467..811539 FT /locus_tag="ROD_t16" FT /product="transfer RNA-Lys" FT /anticodon=(pos:811500..811502,aa:Lys) FT /note="tRNA Lys anticodon TTT, Cove score 87.80" FT CDS complement(811621..811824) FT /transl_table=11 FT /locus_tag="ROD_07371" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TPE5" FT /protein_id="CBG87514.1" FT /translation="MLNKIADWAEKVTTNTRGLPDGGVNALSGLQSASNPGLISEAPSG FT TNSAHSKKAPLGRLFTLVGRAG" FT CDS 811905..812948 FT /transl_table=11 FT /gene="nadA" FT /locus_tag="ROD_07381" FT /product="quinolinate synthetase A" FT /db_xref="GOA:D2TPE6" FT /db_xref="InterPro:IPR003473" FT /db_xref="InterPro:IPR023513" FT /db_xref="UniProtKB/TrEMBL:D2TPE6" FT /protein_id="CBG87515.1" FT /translation="MSVMFDPEAAIYPFPPKPVPLSVDEKQFYREKIKRLLKERDAVMV FT AHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEKTI FT LMPTLQAECSLDLGCPIAEFSAFCDVHPERTVVVYANTSAAVKARADWVVTSSIAVELI FT EHLDSLGEKIIWAPDRHLGNYVQKQTGADVLCWQGACIVHDEFKTQALARMKGLYPDAA FT ILVHPESPQAIVDMADAVGSTSQLINAAKTLPHTQLIVATDRGIFYKMQQAVPGKELLE FT APTAGEGATCRSCAHCPWMAMNGLKAIAEGLEQGGPHHEIQVDAALREGALLPLNRMLD FT FAATLRA" FT misc_feature 811989..812927 FT /gene="nadA" FT /locus_tag="ROD_07381" FT /note="HMMPfam hit to PF02445, Quinolinate synthetase A, FT score 1.1e-187" FT /inference="protein motif:PFAM:PF02445" FT CDS 812974..813693 FT /transl_table=11 FT /gene="pnuC" FT /locus_tag="ROD_07391" FT /product="nicotinamide mononucleotide transport protein" FT /db_xref="GOA:D2TPE7" FT /db_xref="InterPro:IPR006419" FT /db_xref="UniProtKB/TrEMBL:D2TPE7" FT /protein_id="CBG87516.1" FT /translation="MDFFSTQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASMEKI FT SNYFFGLINVTLFAIIFFQIQLYASLLLQLFFFAANIYGWYAWSRQNTQNEAELKIRWL FT PLPKALGWLAVCVVAIGLMTVYIDPVFAFLTRIAVTAMQALGLQVAMPVLQPDAFPFWD FT SCMMVLSIVAMILMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYLILTFIALNGS FT RMWINSARERGSRALSH" FT misc_feature 812974..813555 FT /gene="pnuC" FT /locus_tag="ROD_07391" FT /note="HMMPfam hit to PF04973, Nicotinamide mononucleotide FT transporter PnuC, score 7.2e-102" FT /inference="protein motif:PFAM:PF04973" FT misc_feature join(813031..813099,813118..813177,813187..813240, FT 813301..813369,813445..813504,813523..813591) FT /gene="pnuC" FT /locus_tag="ROD_07391" FT /note="6 probable transmembrane helices predicted for FT ROD07391 by TMHMM2.0 at aa 20-42, 49-68, 72-89, 110-132, FT 158-177 and 184-206" FT CDS complement(813690..814631) FT /transl_table=11 FT /gene="zitB" FT /locus_tag="ROD_07401" FT /product="zinc transporter" FT /db_xref="GOA:D2TPE8" FT /db_xref="InterPro:IPR002524" FT /db_xref="InterPro:IPR023500" FT /db_xref="UniProtKB/TrEMBL:D2TPE8" FT /protein_id="CBG87517.1" FT /translation="MAHAHSHSTPNLPEDNNARRLLLAFCVTAGFMLLEVAGGILSGSL FT ALLADAGHMLTDAAALLFALLAVQFARRPPTVRHTFGWLRLTTLAAFVNAIALVVITLL FT IVWEAIERFYTPRPVAGGMMMTIAIAGLLANILAFWILHRGSEEKNLNVRAAALHVMGD FT LLGSVGAIAAALIIIWTGWTPADPILSILVSLLVLRSAWRLLKDSVNELLEGAPLSLDI FT AALRRRLSQEVPEVRNVHHVHVWMVGEKPVMTLHAQVIPPHDHDALLARIQHFLAHHYQ FT IEHATIQMEYQPCHGADCHLNQTASGHAHHHH" FT misc_feature complement(813744..814571) FT /gene="zitB" FT /locus_tag="ROD_07401" FT /note="HMMPfam hit to PF01545, Cation efflux protein, score FT 1e-114" FT /inference="protein motif:PFAM:PF01545" FT misc_feature complement(814026..814073) FT /note="PS00511 Corticotropin-releasing factor family FT signature." FT /inference="protein motif:Prosite:PS00511" FT misc_feature complement(join(814083..814142,814203..814271, FT 814314..814382,814419..814475,814503..814571)) FT /gene="zitB" FT /locus_tag="ROD_07401" FT /note="5 probable transmembrane helices predicted for FT ROD07401 by TMHMM2.0 at aa 21-43, 53-71, 84-106, 121-143 FT and 164-183" FT CDS complement(814752..815156) FT /transl_table=11 FT /locus_tag="ROD_07411" FT /product="putative exported protein" FT /db_xref="InterPro:IPR020363" FT /db_xref="UniProtKB/TrEMBL:D2TPE9" FT /protein_id="CBG87518.1" FT /translation="MKMTKLASLFLTATLSLASGAALAADTGAQTNNGQANAAADAGQV FT APDAKQNVAPNNLDGTNINTGNTNTNTSGAQQSPGTSTTQDGMTDDMTKDEVHKNTMCK FT DGRCPDVNKKVETGDGTNNNVDTKTDGTTQ" FT misc_feature complement(815055..815090) FT /note="PS00141 Eukaryotic and viral aspartyl proteases FT active site." FT /inference="protein motif:Prosite:PS00141" FT sig_peptide complement(815085..815156) FT /locus_tag="ROD_07411" FT /note="Signal peptide predicted for ROD07411 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 24 and 25" FT CDS 815475..816527 FT /transl_table=11 FT /gene="aroG" FT /locus_tag="ROD_07421" FT /product="phospho-2-dehydro-3-deoxyheptonate aldolase, FT Phe-sensitive" FT /EC_number="2.5.1.54" FT /db_xref="GOA:D2TPF0" FT /db_xref="InterPro:IPR006218" FT /db_xref="InterPro:IPR006219" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:D2TPF0" FT /protein_id="CBG87519.1" FT /translation="MNYQNDDLRIKEINELLPPVALLEKFPASENAANTVAHARKAIHK FT ILKGNDDRLLVVIGPCSIHDPVAAKEYAGRLLALREELKDELEIVMRVYFEKPRTTVGW FT KGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPTAGEFLDMITPQYLADLMSWGAIG FT ARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVN FT TSGNGDCHIILRGGKEPNYSAAHVAVVKEGLAKAGLPAQIMIDFSHANSCKQFKKQMEV FT GADVCRQIADGEKAIMGVMIESHLVEGNQNPDSGEPLVYGKSITDACISWEDTDAILRQ FT LAEAVKARRK" FT misc_feature 815547..816491 FT /gene="aroG" FT /locus_tag="ROD_07421" FT /note="HMMPfam hit to PF00793, DAHP synthetase I/KDSA, FT score 6.3e-183" FT /inference="protein motif:PFAM:PF00793" FT CDS 816700..818868 FT /transl_table=11 FT /locus_tag="ROD_07431" FT /product="putative tonb dependent receptor" FT /db_xref="GOA:D2TPF1" FT /db_xref="InterPro:IPR000531" FT /db_xref="InterPro:IPR010105" FT /db_xref="InterPro:IPR010917" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:D2TPF1" FT /protein_id="CBG87520.1" FT /translation="MNKFPPRARLLSILIAVATHSVHAASFSEENIIVTPQTPENTAQA FT SSGAGFKTDDIEMGPLGNKTWVDTPFSTTTVTHEMISNQRAQSVSELLKYSPSTQMQAR FT GGMDVGRPQSRGMQGSVVANSRLDGLNIVSTTAFPVEMLERLDILNSLTGALYGPASPA FT GQFNFVAKRPTEQTLREVTMGYQSRSAFNGHVDLGGHFDDEHRFGYRLNLADQEGEGNL FT ADSTLRRKLLSVALDWNLQPGTQLQLDASHYEFIQKGYPGSFSYGPDVKLPSAPDPKNS FT HLALSTAGNDLTTDTISTRLIHYLNDDWTLTAGVGWQQADRAMRSVSSKIINSQGDISR FT SMKDSTAAGRFRVLSNTVTLNGHVDTGSIGHDIALSTTGYIWSLYSAKGSGTSYRWDTT FT NMYHPSALYEQGDGKISTGGARYKSSVNTQQSITLGDTLTLTPKWSAMFFLSQSWLQSQ FT NFDKSGHQSSQIDENGLSPNAALMYKITPDVMAYVSYAESLEQGGTAPTDSDVKNAGQT FT LDPYRSKQYEVGLKADAAGMNLGAALFRLERPFAYVDPDDNTYKEQGNQVNHGLEFTAT FT GQVVQGLNIFSGITLLDPKLKDTASAATRNKQVVGVPKIQANLLAEYSLPSMPQWVYSA FT NVHYTGKRAANDTNTAWAGSYTTWDLGTRYTTKISQVPTTFRVVVNNVFDKHYWASIFP FT SGTDGDNGSPSAFLGSGREIRASVTFDF" FT sig_peptide 816700..816771 FT /locus_tag="ROD_07431" FT /note="Signal peptide predicted for ROD07431 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 24 and 25" FT misc_feature 816892..817194 FT /locus_tag="ROD_07431" FT /note="HMMPfam hit to PF07715, TonB-dependent receptor, FT plug, score 3.6e-14" FT /inference="protein motif:PFAM:PF07715" FT misc_feature 818125..818865 FT /locus_tag="ROD_07431" FT /note="HMMPfam hit to PF00593, TonB-dependent receptor, FT beta-barrel, score 1.9e-23" FT /inference="protein motif:PFAM:PF00593" FT misc_feature 818812..818865 FT /note="PS01156 TonB-dependent receptor proteins signature FT 2." FT /inference="protein motif:Prosite:PS01156" FT CDS 818880..819863 FT /transl_table=11 FT /locus_tag="ROD_07441" FT /product="iron-chelating periplasmic-binding protein" FT /db_xref="GOA:D2TPF2" FT /db_xref="InterPro:IPR002491" FT /db_xref="UniProtKB/TrEMBL:D2TPF2" FT /protein_id="CBG87521.1" FT /translation="MLIRIFPVLAWLLAGNLFAQNLQHDVRIASPWPAQNTIIAMLGYG FT DSIVGTSLVAKRIPLFRQSLPAIDDTPVISVNGGHELDPEQIVALGVQRLFVPKSMTVP FT RQSLLEQAGVQVLAFDANSMQALILRVQKTADVLGPDAQEKARRYQQYFTRNVRLVQER FT LKDLPASQRVSVYHSMGNPLTTTGRPSLNQDWMDLAGAKNIAENWFSHKPNRAGEVALE FT QIVAANPAVIVAMNRRDANAILASPQWTEVDAVRHHRVYVNPKGMFWWCRETSEEALQI FT LWLAKTLYPQRFADVDMREETRQFYHNFFGIVLSDAQLSDVLNPPA" FT sig_peptide 818880..818936 FT /locus_tag="ROD_07441" FT /note="Signal peptide predicted for ROD07441 by SignalP 2.0 FT HMM (Signal peptide probability 0.998) with cleavage site FT probability 0.998 between residues 19 and 20" FT misc_feature 819357..819680 FT /locus_tag="ROD_07441" FT /note="HMMPfam hit to PF01497, Periplasmic binding protein, FT score 1.2e-08" FT /inference="protein motif:PFAM:PF01497" FT CDS 819860..820942 FT /transl_table=11 FT /locus_tag="ROD_07451" FT /product="ABC transporter permease (FecCD family)" FT /db_xref="GOA:D2TPF3" FT /db_xref="InterPro:IPR000522" FT /db_xref="UniProtKB/TrEMBL:D2TPF3" FT /protein_id="CBG87522.1" FT /translation="MKHMEKKMLSLAARTPESIDYRYRRIIRKRWLLMLIVILAIAVSL FT TFDFTLGPSALSLPELWRSLFHPTEVSVGMRVIVREIRLPYALMALWVGMALGLAGAEM FT QTLLNNPLVSPFTLGVSSAAAFGAALAIVSGVGIPGIPEAWFIPANAFLFALLSAFLLD FT WLTRWTRVATPGVVLFGIALVFTFNALVAMMQFVADEDTLQGLVFWTMGSLTRASWEKV FT GVLVVASIPLLLWAMRSAWSLTALRLGEDRAMSFGIDIRRLRRASLLRISLLSALSVAF FT VGPIGFIGLVAPHIARILFGEDHRFYLPGSMLTGGLVLSLASIASKNIFPGVIIPVGIV FT TSLVGVPFFLSIILRYRGKV" FT sig_peptide 819860..819997 FT /locus_tag="ROD_07451" FT /note="Signal peptide predicted for ROD07451 by SignalP 2.0 FT HMM (Signal peptide probability 0.894) with cleavage site FT probability 0.514 between residues 46 and 47" FT misc_feature join(819950..820018,820103..820156,820193..820261, FT 820289..820345,820382..820450,820508..820567, FT 820664..820732,820775..820834,820853..820921) FT /locus_tag="ROD_07451" FT /note="9 probable transmembrane helices predicted for FT ROD07451 by TMHMM2.0 at aa 31-53, 82-99, 112-134, 144-162, FT 175-197, 217-236, 269-291, 306-325 and 332-354" FT misc_feature 819977..820924 FT /locus_tag="ROD_07451" FT /note="HMMPfam hit to PF01032, Bacterial transport system FT permease protein, score 2.7e-80" FT /inference="protein motif:PFAM:PF01032" FT CDS 820942..821745 FT /transl_table=11 FT /locus_tag="ROD_07461" FT /product="ABC transporter ATP-binding protein" FT /product="abc transporter atp-binding protein" FT /db_xref="GOA:D2TPF4" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TPF4" FT /protein_id="CBG87523.1" FT /translation="MSGMILRGVSTGYLNRPVIREMSIDALPRGQVTGLLGPNGCGKST FT LLRALAGLLRASGEVHLNGKNLLAQPLAARSRKVVYLPQSLPQGVHLRVLESIYVAQRT FT LSGRDDARALAILQQLGIAHLALHYLDQLSGGQRQLVGLAQSLIRQPELLLLDEPLSAL FT DLNYQFLVMERLRQDTQACNRVTVVVLHDINIALRHCGYVVMLKEGRLVACGKPETVIT FT AHTLAEVYGVRGRVERCSKGTAQVVLDGVTGGEGEINEGAYCAFG" FT misc_feature 821029..821568 FT /locus_tag="ROD_07461" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 6.9e-51" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 821050..821073 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 821338..821382 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT CDS complement(821798..822550) FT /transl_table=11 FT /gene="gpmA" FT /locus_tag="ROD_07471" FT /product="2,3-bisphosphoglycerate-dependent FT phosphoglycerate mutase" FT /db_xref="GOA:D2TPF5" FT /db_xref="InterPro:IPR001345" FT /db_xref="InterPro:IPR005952" FT /db_xref="InterPro:IPR013078" FT /db_xref="UniProtKB/TrEMBL:D2TPF5" FT /protein_id="CBG87524.1" FT /translation="MAVTKLVLVRHGESQWNNENRFTGWYDVDLSEKGVGEAKAAGKLL FT KEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETA FT EKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLTEKELPLTESLALTIDRVIP FT YWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDENF FT KPIKHYYLGNADEIAAKAAAVANQGKAK" FT misc_feature complement(821978..822538) FT /gene="gpmA" FT /locus_tag="ROD_07471" FT /note="HMMPfam hit to PF00300, Phosphoglycerate mutase, FT score 2e-44" FT /inference="protein motif:PFAM:PF00300" FT misc_feature complement(822500..822529) FT /note="PS00175 Phosphoglycerate mutase family FT phosphohistidine signature." FT /inference="protein motif:Prosite:PS00175" FT CDS 823002..824360 FT /transl_table=11 FT /gene="chbC" FT /locus_tag="ROD_07481" FT /product="N,N'-diacetylchitobiose permease IIC component FT (PTS system N,N'-diacetylchitobiose-specific EIIC FT component)" FT /db_xref="GOA:D2TPF6" FT /db_xref="InterPro:IPR003352" FT /db_xref="InterPro:IPR004501" FT /db_xref="InterPro:IPR004796" FT /db_xref="InterPro:IPR013013" FT /db_xref="UniProtKB/TrEMBL:D2TPF6" FT /protein_id="CBG87525.1" FT /translation="MSGAISSLERVILPVAVKLGKQVHINAIKNGFIRLMPLTLVGAMF FT VLINNVFLNFDDGSFFWSLGVRLDSNTIEILNGLKTIGASVYDGSLGIMPLLTPFFIGM FT ALAEERKVDALAAGLLAIAAFMTVTPYTVGDINAIGANWLGGANIISGIIIGLVVAEMF FT SLIIKLEWVIVLPESVPSSVSRSFTALIPGFIILFIMGLISWGLSLAGTHFHQVIMQSI FT AVPLASLGGVVGWVYVTFNSLLWFFGVHGGLALTALNSGILGPWGMENMAIYTQYGSVE FT SALAAGKTFHFWTGPMLESYVYLGGTGATLSLILAIFIASRRADYRQVAKMALPSGMFN FT INEPILFGLPIIMNPVLMIPFIIIQPVLAGITLLVYSLGIIPPSTNFAPWTMPPGLGAF FT FNSNGSVAALILALVNVVIATLIYLPFVMIANKAQNIIDEDESEEDIAAALKF" FT misc_feature 823086..824096 FT /gene="chbC" FT /locus_tag="ROD_07481" FT /note="HMMPfam hit to PF02378, Phosphotransferase system, FT EIIC, score 3.5e-57" FT /inference="protein motif:PFAM:PF02378" FT misc_feature join(823092..823160,823254..823322,823341..823400, FT 823428..823496,823554..823622,823650..823718, FT 823737..823805,823899..823967,824076..824144, FT 824214..824282) FT /gene="chbC" FT /locus_tag="ROD_07481" FT /note="10 probable transmembrane helices predicted for FT ROD07481 by TMHMM2.0 at aa 31-53, 85-107, 114-133, 143-165, FT 185-207, 217-239, 246-268, 300-322, 359-381 and 405-427" FT misc_feature 823188..823217 FT /note="PS00449 ATP synthase a subunit signature." FT /inference="protein motif:Prosite:PS00449" FT CDS 824372..825190 FT /transl_table=11 FT /gene="chbR" FT /locus_tag="ROD_07491" FT /product="putative Chb operon repressor" FT /db_xref="GOA:D2TPF7" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR011051" FT /db_xref="InterPro:IPR012287" FT /db_xref="InterPro:IPR013096" FT /db_xref="InterPro:IPR014710" FT /db_xref="InterPro:IPR018060" FT /db_xref="InterPro:IPR020449" FT /db_xref="UniProtKB/TrEMBL:D2TPF7" FT /protein_id="CBG87526.1" FT /translation="MEINTVYESQFLKGKDFYFFILDKTESVSGLHQHDYYEFTIVLTG FT SCSQEINGKRVSMERGYFVFIPVGSYHQTFYDYGVTRILNMGVSRQYFEKHYLDMLPSC FT FIASQSYAMSNSFLTYIESTLATLNINQEAFDEFNKLLTFYIVNHLQHYKDSSCGDNIP FT WWLSQLVREMHNKSLFAENALNNMVKISGKTQSYLTRATNRYFHKTPGQIINDIRINYC FT KNLLETSNFSVADIAFEAGFSSPGMFINNFKKATSFTPGHYRRRLAHSVR" FT misc_feature 824423..824632 FT /gene="chbR" FT /locus_tag="ROD_07491" FT /note="HMMPfam hit to PF07883, Cupin 2, conserved barrel, FT score 0.0015" FT /inference="protein motif:PFAM:PF07883" FT misc_feature 825038..825166 FT /gene="chbR" FT /locus_tag="ROD_07491" FT /note="HMMPfam hit to PF00165, Helix-turn-helix, AraC type, FT score 9e-09" FT /inference="protein motif:PFAM:PF00165" FT CDS 825252..826613 FT /transl_table=11 FT /gene="chbF" FT /locus_tag="ROD_07501" FT /product="6-phospho-beta-glucosidase" FT /EC_number="3.2.1.86" FT /db_xref="GOA:D2TPF8" FT /db_xref="InterPro:IPR001088" FT /db_xref="InterPro:IPR015955" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR019802" FT /db_xref="InterPro:IPR022616" FT /db_xref="UniProtKB/TrEMBL:D2TPF8" FT /protein_id="CBG87527.1" FT /translation="MMKKLKIVTLGGGSSYTPELLEGFIKRYHEMPISELWLVDVKEGE FT KKLNIIFELCQRMVKQAGIPVVIHKSLDRREALQGADFVTTQLRVGQLQAREQDEHIPL FT SHGYLGQETNGAGGLFKGLRTIPVIFDIIKDVQEICPQAWVINFTNPAGMVTEAVYRHT FT SFRKFIGVCNVPVGMRMFIADILALSEQDQLSIDLFGLNHLVFIKDVWVNSQSRFKEVI FT DLVSSGTIQGNAVKNIFSLPFSEGLIRSLNLLPCSYLLYYFKQKEMLAIEMGEYYKGEV FT RAQVVQKLEKELFDIYQDPELHVKPGELEARGGAWYSDAACEVINAIYNDKQTEHYVNI FT PHCGHVDNIPQEWTVEMTCLLGKNGAVPHPRIKRFDENVLGLIYTIKGFEIAASRAAIS FT GKINDVLLALNLNPLVNSDHGAELLAREMLLANRAYLPQFADTIAELHRHQPRQ" FT misc_feature 825267..826496 FT /gene="chbF" FT /locus_tag="ROD_07501" FT /note="HMMPfam hit to PF02056, Glycoside hydrolase, family FT 4, score 5.5e-192" FT /inference="protein motif:PFAM:PF02056" FT misc_feature 825672..825767 FT /note="PS01324 Glycosyl hydrolases family 4 signature." FT /inference="protein motif:Prosite:PS01324" FT CDS 826624..827382 FT /transl_table=11 FT /gene="chbG" FT /locus_tag="ROD_07511" FT /product="putative chb operon protein ChbG" FT /db_xref="GOA:D2TPF9" FT /db_xref="InterPro:IPR002509" FT /db_xref="InterPro:IPR006879" FT /db_xref="InterPro:IPR022948" FT /db_xref="UniProtKB/TrEMBL:D2TPF9" FT /protein_id="CBG87528.1" FT /translation="MARLLIVNADDFGLSKGINYGIAEAHRRGLVTSTTAMINASAIEH FT AAEISANLPSLAVGLHFVLSYGAPLTQAPSLTREGKMGKWLWQATGQGLVSDEEIVAEL FT HQQYQRFISVFGRPPGHIDSHHHVHFLPQVWRHVEQFAKDKDLPLRIDWQVAREQNITP FT RGVSSVEYFINDFYGENVSSRFLLAALAKSAAGGYQSTELMCHPGFIDNEVRQSRYCFP FT RLEELEVLTSSGLKQAVEEQGFRLGTWSDL" FT misc_feature 826630..827349 FT /gene="chbG" FT /locus_tag="ROD_07511" FT /note="HMMPfam hit to PF04794, YdjC-like protein, score FT 8.8e-93" FT /inference="protein motif:PFAM:PF04794" FT CDS complement(827425..828465) FT /transl_table=11 FT /gene="galM" FT /locus_tag="ROD_07521" FT /product="aldose 1-epimerase (mutarotase)" FT /EC_number="5.1.3.3" FT /db_xref="GOA:D2TPG0" FT /db_xref="InterPro:IPR008183" FT /db_xref="InterPro:IPR011013" FT /db_xref="InterPro:IPR013458" FT /db_xref="InterPro:IPR014718" FT /db_xref="InterPro:IPR015443" FT /db_xref="InterPro:IPR018052" FT /db_xref="UniProtKB/TrEMBL:D2TPG0" FT /protein_id="CBG87529.1" FT /translation="MLNETPALAPDGQPYRLLTLRNSAGMVVTLMDWGATLLSARIPLS FT DGSVREALLGCASPEHYRDQTAFLGASIGRYANRIADSRYVFAGETVTLQPSQGVNQLH FT GGPEGFDKRRWQIVNQNERQVLFALTSDDGDQGFPGNLGATAQYRLTDDNRISVTYRAT FT VDKTCPVNLTNHVYFNLDGDQTDVRQHKLQILADEYLPVDEGGIPRDGLKSVVGTTFDF FT RNGKIIASEFLADDDQRKVKGYDHAFLLQAKGDVKKPVARLWSADEKLQMEVYTSAPAL FT QFYSGNYLGGTSSRGPEPYADYQGLALESEFLPDSPNHPEWPQPDCFLRPGEEYASVTE FT YRFIAS" FT misc_feature complement(827440..828420) FT /gene="galM" FT /locus_tag="ROD_07521" FT /note="HMMPfam hit to PF01263, Aldose 1-epimerase, score FT 2.6e-124" FT /inference="protein motif:PFAM:PF01263" FT misc_feature complement(827926..827955) FT /note="PS00545 Aldose 1-epimerase putative active site." FT /inference="protein motif:Prosite:PS00545" FT CDS complement(828459..829607) FT /transl_table=11 FT /gene="galK" FT /locus_tag="ROD_07531" FT /product="galactokinase" FT /EC_number="2.7.1.6" FT /db_xref="GOA:D2TPG1" FT /db_xref="InterPro:IPR000705" FT /db_xref="InterPro:IPR006203" FT /db_xref="InterPro:IPR006204" FT /db_xref="InterPro:IPR006206" FT /db_xref="InterPro:IPR013750" FT /db_xref="InterPro:IPR014721" FT /db_xref="InterPro:IPR019539" FT /db_xref="InterPro:IPR019741" FT /db_xref="InterPro:IPR020568" FT /db_xref="InterPro:IPR022963" FT /db_xref="UniProtKB/TrEMBL:D2TPG1" FT /protein_id="CBG87530.1" FT /translation="MSLKEKTQSLFANIYGYPATHTIQAPGRVNLIGEHTDYNDGFVLP FT CAIDYQTVISCAARDDRKVRVIAADYDNQVDEFSLDAPIVTHDSQQWSNYVRGVVKHLQ FT KRDASFGGADLVISGNVPQGAGLSSSASLEVAVGTVFQQLYHLPLDGTQIALNGQEAEN FT QFVGCNCGIMDQLISALGKQDHALLIDCRSLGSKAVSMPQGVAVVIINSNFKRTLVGSE FT YNTRRQQCETGARFFQQPALRDVSLEQFDAVANELDPLVAKRVRHVLTENARTVEAASA FT LEKGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDKGGVRMTGGGFGGCV FT VALIPEDLVPAVQQAVAEQYEARTGIKETFYVCKPSQGAGQC" FT misc_feature complement(828522..828776) FT /gene="galK" FT /locus_tag="ROD_07531" FT /note="HMMPfam hit to PF08544, GHMP kinase, C-terminal, FT score 2e-14" FT /inference="protein motif:PFAM:PF08544" FT misc_feature complement(829062..829268) FT /gene="galK" FT /locus_tag="ROD_07531" FT /note="HMMPfam hit to PF00288, GHMP kinase, score 1.9e-19" FT /inference="protein motif:PFAM:PF00288" FT misc_feature complement(829212..829247) FT /note="PS00627 GHMP kinases putative ATP-binding domain." FT /inference="protein motif:Prosite:PS00627" FT misc_feature complement(829494..829529) FT /note="PS00106 Galactokinase signature." FT /inference="protein motif:Prosite:PS00106" FT CDS complement(829610..830656) FT /transl_table=11 FT /gene="galT" FT /locus_tag="ROD_07541" FT /product="galactose-1-phosphate uridylyltransferase" FT /EC_number="2.7.7.12" FT /db_xref="GOA:D2TPG2" FT /db_xref="InterPro:IPR001937" FT /db_xref="InterPro:IPR005849" FT /db_xref="InterPro:IPR005850" FT /db_xref="InterPro:IPR011146" FT /db_xref="InterPro:IPR011151" FT /db_xref="InterPro:IPR019779" FT /db_xref="UniProtKB/TrEMBL:D2TPG2" FT /protein_id="CBG87531.1" FT /translation="MTTFNPVDHPHRRFNPLTGQWILVSPHRAKRPWQGAQETPSDETL FT PAHDPHCFLCAGNTRVTGDKNPDYTGTYVFTNDFAALMTDTPDAPDSRDPLMRCQSARG FT TSRVICFSPDHSKTLPELSVSALTEIVKTWQEQTADLGKTYPWVQVFENKGAAMGCSNP FT HPHGQIWANSFLPNEAEREDRLQKAYFAEQDSPMLVDYVQRELADGSRTVVETQHWLAV FT VPYWAAWPFETLLLPKAHVLRITDLTDEQRADLALALKKLTSRYDNLFRCSFPYSMGWH FT GAPFNGEQNDHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVSD FT IHFRESGV" FT misc_feature complement(829616..830125) FT /gene="galT" FT /locus_tag="ROD_07541" FT /note="HMMPfam hit to PF02744, Galactose-1-phosphate uridyl FT transferase, C-terminal, score 3.3e-103" FT /inference="protein motif:PFAM:PF02744" FT misc_feature complement(830129..830653) FT /gene="galT" FT /locus_tag="ROD_07541" FT /note="HMMPfam hit to PF01087, Galactose-1-phosphate uridyl FT transferase, N-terminal, score 2.8e-105" FT /inference="protein motif:PFAM:PF01087" FT misc_feature complement(830153..830206) FT /note="PS00117 Galactose-1-phosphate uridyl transferase FT family 1 active site signature." FT /inference="protein motif:Prosite:PS00117" FT CDS complement(830666..831682) FT /transl_table=11 FT /gene="galE" FT /locus_tag="ROD_07551" FT /product="UDP-glucose 4-epimerase" FT /EC_number="5.1.3.2" FT /db_xref="GOA:D2TPG3" FT /db_xref="InterPro:IPR001509" FT /db_xref="InterPro:IPR005886" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TPG3" FT /protein_id="CBG87532.1" FT /translation="MKVLVTGGSGYIGSHTCVQLLKNGHDVIILDNLCNSKRSVLPVIE FT RLGGKQPTFVEGDIRNEALMTELLHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVNGT FT LRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDL FT QKAQPEWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDY FT PTQDGTGVRDYIHVMDLADGHVTAMEKLAGVQGVHIYNLGAGVGSSVLDVVNAFSKACG FT KPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWRWQSRHPQGYPD" FT misc_feature complement(830897..831676) FT /gene="galE" FT /locus_tag="ROD_07551" FT /note="HMMPfam hit to PF01370, NAD-dependent FT epimerase/dehydratase, score 1.3e-85" FT /inference="protein motif:PFAM:PF01370" FT CDS complement(831886..833358) FT /transl_table=11 FT /gene="modF" FT /locus_tag="ROD_07561" FT /product="putative molybdenum transport ATP-binding protein FT (photorepair protein PhrA)" FT /db_xref="GOA:D2TPG4" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:D2TPG4" FT /protein_id="CBG87533.1" FT /translation="MSLLQISQGTFRLSDTKTLQLDSVSLNAGESWAFVGANGSGKSAL FT ARALAGELPLLKGERLCHFRRIAHLSFEQLQKLVSDEWQRNNTDLLGPGEDDTGRTTAD FT IIQDEVKNPDRCNELAQQFGISHLLTRRFKYLSTGETRKTLLCQALMSDPDLLILDEPF FT DGLDVASRQQLAALLETLHHSGITLALVLNRFDEIPDFVQYAGVLADCALTQTGEKTAL FT LQQALIAQLAHSERLQGVSLPEPDEPAAGQHLPADQPRIILRDGVVSYNDRPVLHHLSW FT QVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGY FT VSSSLHLDYRVSTTLRNVILSGYFDSIGIYQAVSDRQQKLTQQWLEILGMDKRTADAPF FT HSLSWGQQRLALIARALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGDTQLLFV FT SHHAEDAPACITHRLAFVPQNEGYAYQQTRLR" FT misc_feature complement(831922..832503) FT /gene="modF" FT /locus_tag="ROD_07561" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 5e-48" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(832459..832482) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(832720..832842) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT /inference="protein motif:Prosite:PS00041" FT misc_feature complement(832726..833274) FT /gene="modF" FT /locus_tag="ROD_07561" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 1.2e-19" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(833230..833253) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(833688..834476) FT /transl_table=11 FT /gene="modE" FT /locus_tag="ROD_07571" FT /product="transcriptional regulator" FT /db_xref="GOA:D2TPG5" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR003725" FT /db_xref="InterPro:IPR004606" FT /db_xref="InterPro:IPR005116" FT /db_xref="InterPro:IPR008995" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR016462" FT /db_xref="UniProtKB/TrEMBL:D2TPG5" FT /protein_id="CBG87534.1" FT /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISY FT KSAWDAINEMNQLSEQTLVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLS FT DDDALPLNSLLAAISRFSLQTSARNQWFGTVTARDRDQVQQHIEVLLADGETRLKAAIT FT AQSGERLGLNEGKEVLVLLKAPWVGLTQDEAVARAADNQLKGTIHHIERGTEQCEVLMT FT LPDSQTLCATVPVANAAELAPGDTVTAFFNADKVIIATLC" FT misc_feature complement(833703..833888) FT /gene="modE" FT /locus_tag="ROD_07571" FT /note="HMMPfam hit to PF03459, Transport-associated OB, FT type 1, score 5.6e-13" FT /inference="protein motif:PFAM:PF03459" FT misc_feature complement(833910..834104) FT /gene="modE" FT /locus_tag="ROD_07571" FT /note="HMMPfam hit to PF03459, Transport-associated OB, FT type 1, score 1.3e-15" FT /inference="protein motif:PFAM:PF03459" FT misc_feature complement(834228..834422) FT /gene="modE" FT /locus_tag="ROD_07571" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 1.9e-16" FT /inference="protein motif:PFAM:PF00126" FT CDS 834503..834754 FT /transl_table=11 FT /locus_tag="ROD_07581" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR019702" FT /db_xref="UniProtKB/TrEMBL:D2TPG6" FT /protein_id="CBG87535.1" FT /translation="MTENPACAKPTAQKGSAFLRDAVRILKELNQEMTMLELLKSLVFA FT VIMVPVVMAIILGLIYGLGEVFNLFSGIGQKDRSRQNH" FT misc_feature 834626..834694 FT /locus_tag="ROD_07581" FT /note="1 probable transmembrane helix predicted for FT ROD07581 by TMHMM2.0 at aa 42-64" FT CDS 834961..835737 FT /transl_table=11 FT /gene="modA" FT /locus_tag="ROD_07591" FT /product="molybdate ABC transporter, substrate-binding FT protein" FT /db_xref="GOA:D2TPG7" FT /db_xref="InterPro:IPR005950" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:D2TPG7" FT /protein_id="CBG87536.1" FT /translation="MARSWLRLFAGATLSLTLAGHALAQETKITVFAAASLTNAMQDIA FT AAYKKEANVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAADKKAIDAGSRQTL FT LGNSLVVVAPKASAQQDFNIDAKTNWTRLLNGGRLAVGDPEHVPAGIYAKEALQKLGAW FT ETLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPI FT AIVDGHKNATVSAFYDYLKGPQAAGIFKRYGFTTKS" FT misc_feature 834961..835302 FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT /inference="protein motif:Prosite:PS00430" FT sig_peptide 834961..835032 FT /gene="modA" FT /locus_tag="ROD_07591" FT /note="Signal peptide predicted for ROD07591 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.997 between residues 24 and 25" FT misc_feature 834973..835701 FT /gene="modA" FT /locus_tag="ROD_07591" FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein, family 1, score 2.7e-09" FT /inference="protein motif:PFAM:PF01547" FT CDS 835734..836423 FT /transl_table=11 FT /gene="modB" FT /locus_tag="ROD_07601" FT /product="molybdenum ABC transporter, permease protein" FT /db_xref="GOA:D2TPG8" FT /db_xref="InterPro:IPR000515" FT /db_xref="InterPro:IPR011867" FT /db_xref="UniProtKB/TrEMBL:D2TPG8" FT /protein_id="CBG87537.1" FT /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCRFPGKA FT LLDSVLHLPLVLPPVVVGYLLLISMGRRGAIGQWLYDWFGVTFAFNWRGAVLAAAVMSF FT PLMVRAIRLALEGVDMKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGE FT FGATITFVSNIPGETRTIPSAMYTLIQTPGGESAAARLCVISIVLALISLLISEWLARV FT SRARTGR" FT misc_feature 835752..836420 FT /gene="modB" FT /locus_tag="ROD_07601" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 1.8e-24" FT /inference="protein motif:PFAM:PF00528" FT misc_feature join(835776..835844,835878..835946,836004..836072, FT 836133..836201,836322..836390) FT /gene="modB" FT /locus_tag="ROD_07601" FT /note="5 probable transmembrane helices predicted for FT ROD07601 by TMHMM2.0 at aa 15-37, 49-71, 91-113, 134-156 FT and 197-219" FT misc_feature 836076..836162 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT CDS 836426..837484 FT /transl_table=11 FT /gene="modC" FT /locus_tag="ROD_07611" FT /product="molybdenum ABC transporter, ATP-binding protein" FT /db_xref="GOA:D2TPG9" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004606" FT /db_xref="InterPro:IPR005116" FT /db_xref="InterPro:IPR008995" FT /db_xref="InterPro:IPR011868" FT /db_xref="InterPro:IPR015852" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TPG9" FT /protein_id="CBG87538.1" FT /translation="MLELHFSQTLGAHCLTIDETLPASGITAIFGVSGAGKTSLINAIS FT GLTKPQKGRIVLNGRVLNDAENGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMAKS FT MVSQFDKLVALLGIEPLLDRLPGGLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPR FT KRELLPYLQRLAREINIPMLYVSHSLDEILHLADKVMVLENGQVKAFGALEEVWGSSVM FT HPWLPKEQQSSILKVSVLEHHPHYAMTALALGDQHVWVNKLDEPLHTALRIRIQASDVS FT LVLQPPQQSSIRNVLRAKVANCYDVDGQVEVQLEVGGKTLWARISPWARDELTIKPGLW FT LYAQIKSVSITA" FT misc_feature 836495..837040 FT /gene="modC" FT /locus_tag="ROD_07611" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 2.6e-68" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 836516..836539 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 836810..836854 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature 837293..837481 FT /gene="modC" FT /locus_tag="ROD_07611" FT /note="HMMPfam hit to PF03459, Transport-associated OB, FT type 1, score 4e-13" FT /inference="protein motif:PFAM:PF03459" FT CDS complement(837485..838303) FT /transl_table=11 FT /locus_tag="ROD_07621" FT /product="phosphatase" FT /EC_number="3.1.3.-" FT /db_xref="GOA:D2TPH0" FT /db_xref="InterPro:IPR000150" FT /db_xref="InterPro:IPR006379" FT /db_xref="InterPro:IPR013200" FT /db_xref="InterPro:IPR023214" FT /db_xref="UniProtKB/TrEMBL:D2TPH0" FT /protein_id="CBG87539.1" FT /translation="MTARVIALDLDGTLLTPQKTLLPSSLEALSRARDAGYQLIIVTGR FT HHVAIHPFYQALALDTPAICCNGTYLYNYHAKSVIEADPMPVDQALQLIDMLDEQQIHG FT LMYVDEAMLYERPTGHVIRTANWAQTLPPEQRPVFTQVPSLAQAAREVNAVWKFALTDE FT NITRLQQFSRQVDLELGLECEWSWHDQVDIARRGNSKGKRLKQWIESQGGSMENVIAFG FT DNYNDISMLEAAGTGVAMGNADEAVKAHANVVIGDNTTDSIARFIYTHLL" FT misc_feature complement(837503..838288) FT /locus_tag="ROD_07621" FT /note="HMMPfam hit to PF08282, HAD superfamily FT hydrolase-like, type 3, score 4.9e-86" FT /inference="protein motif:PFAM:PF08282" FT misc_feature complement(837575..837643) FT /note="PS01229 Hypothetical cof family signature 2." FT /inference="protein motif:Prosite:PS01229" FT misc_feature complement(838256..838291) FT /note="PS01228 Hypothetical cof family signature 1." FT /inference="protein motif:Prosite:PS01228" FT CDS 838446..839441 FT /transl_table=11 FT /gene="pgl" FT /locus_tag="ROD_07631" FT /product="6-phosphogluconolactonase" FT /EC_number="3.1.1.31" FT /db_xref="GOA:D2TPH1" FT /db_xref="InterPro:IPR011045" FT /db_xref="InterPro:IPR015943" FT /db_xref="InterPro:IPR019405" FT /db_xref="InterPro:IPR022528" FT /db_xref="UniProtKB/TrEMBL:D2TPH1" FT /protein_id="CBG87540.1" FT /translation="MKQTVYTASPESQQIHVWSLSHDGALTLVQVVDVPGQVQPMVVSP FT DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESPLPGSPTHISTDRHGRFVFVGSYNAG FT NVSVTRLEEGLPVGVVEVIEGLEGCHSANIAPDNRTLWVPALKQDRICLFTLSDDGRLQ FT AQEPAEVITVEGAGPRHMVFHPNQQYAYCINELNSSVDVWELKDPHGKIECVQTLDMMP FT ADFADTRWAADIHITPDGRHLYACDRTASIITVFNVSEDGSVLSKEGFQPTETQPRGFN FT IDHSGKYLIAAGQKSHHIAVYEISGAQGLLTEKGRYAVGQGPMWVVVNAF" FT CDS complement(839533..840456) FT /transl_table=11 FT /locus_tag="ROD_07641" FT /product="LysR-family transcriptional regulator" FT /db_xref="GOA:D2TPH2" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TPH2" FT /protein_id="CBG87541.1" FT /translation="MKHELSSMKAFVTLAESESFNNAAKLLNITQPALTRRIKKMEEDL FT QVILFERTTRKVTLTKAGKMLLPEAREIIKKLDEMLFNIREMNTHQRGRITLSCIPTAV FT FYFLPQAIGKFNELYPNINVRIMEQGTHNCMESVLCNEADFGINMNNITNSSIDFTPLV FT NEPFVLACRRDHPLASRQLVEWQELVNHTLIGVRSSSGNRLLIEQQLADKPWKLEWFYE FT VRHLSTSLGLVEAGLGVSALPGLAMPQMPHPTLLGIPLVEPVIRRTLGIIRRKDAVLSP FT PAERFFTLLLNLWTDQSDLLWRPVSE" FT misc_feature complement(839572..840195) FT /locus_tag="ROD_07641" FT /note="HMMPfam hit to PF03466, LysR, substrate-binding, FT score 1.4e-52" FT /inference="protein motif:PFAM:PF03466" FT misc_feature complement(840265..840444) FT /locus_tag="ROD_07641" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 7.6e-21" FT /inference="protein motif:PFAM:PF00126" FT misc_feature complement(840310..840402) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature complement(840340..840405) FT /note="Predicted helix-turn-helix motif with score FT 1419.000, SD 4.02 at aa 18-39, sequence FT ESFNNAAKLLNITQPALTRRIK" FT CDS 840634..841686 FT /transl_table=11 FT /locus_tag="ROD_07651" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007400" FT /db_xref="UniProtKB/TrEMBL:D2TPH3" FT /protein_id="CBG87542.1" FT /translation="MKKIPCVMMRGGTSRGAFLRAEDLPEDTAQRDAVLISIMGSGNEL FT EIDGIGGGNPLTSKVAIVSRSAAPDADIDYLFAQVLVHEQRVDTTPNCGNMLCAVGAFA FT IEQGLVAASTPVTRIRIRNVNTHTLIEADVQTPNGAVNYEGTVRIDGVPGTAAPVALTF FT LNAAGAKTGRLFPTGQPLNYFDAVPTTCIDMAMPVVMIPADYLGKTGYETAAELDGDAQ FT LLARIESIRLQAGLAMGLGDVADKVIPKPVLISPPQKGGTLNVRYFMPHACHKALAITG FT AIAIASSCAIAGTVTRQIIPFPGHGKITLEHPGGSLDIQLSNESDDPTTLRASVIRTAR FT KIFSGDVYLP" FT misc_feature 840634..841683 FT /locus_tag="ROD_07651" FT /note="HMMPfam hit to PF04303, Protein of unknown function FT DUF453, score 9.8e-205" FT /inference="protein motif:PFAM:PF04303" FT misc_feature 841468..841500 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 841769..843202 FT /transl_table=11 FT /locus_tag="ROD_07661" FT /product="putative Sodium:sulfate symporter" FT /db_xref="GOA:D2TPH4" FT /db_xref="InterPro:IPR001898" FT /db_xref="UniProtKB/TrEMBL:D2TPH4" FT /protein_id="CBG87543.1" FT /translation="MNVKSLWKLITILAIPCVIGLLPAPAGLSELAWVLFGIYLAAIVG FT LVIKPFPEPVVLLMAVAASMVVVGNLGAGQFKTSSVLSGYASGTTWLVFSAFTLSAAFV FT TTGLGKRIAYILIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVA FT LGSEPDKSPRRVGHYLMMTVYMVTKTTSYMFFTAMAGNILALKMINDICHLQISWGGWA FT LAALLPGIVMLLLAPLVIYFMYPPEIKKVDNKTIARAGLENLGPMKVREKMLLGIFVLA FT LLGWIFSKSLGIDESTVAIVVMGAMLLLGVVSWDDVVKNKGGWNTLIWYGGIIGLSSLL FT SKVKFFDWLAELFKNNISFDNHSNIAFFIILFLSIIVRYFFASGSAYIVAMMPVFAMLA FT NVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAMLTFFTFL FT VHITLGVWWWNLLIGWNML" FT sig_peptide 841769..841852 FT /locus_tag="ROD_07661" FT /note="Signal peptide predicted for ROD07661 by SignalP 2.0 FT HMM (Signal peptide probability 0.938) with cleavage site FT probability 0.506 between residues 28 and 29" FT misc_feature 841775..843190 FT /locus_tag="ROD_07661" FT /note="HMMPfam hit to PF00939, Sodium/sulphate symporter, FT score 9.5e-259" FT /inference="protein motif:PFAM:PF00939" FT misc_feature join(841781..841849,841859..841912,841931..841987, FT 842015..842083,842102..842170,842213..842266, FT 842315..842383,842426..842494,842588..842647, FT 842657..842710,842747..842815,842858..842911, FT 842948..843016,843029..843085,843104..843172) FT /locus_tag="ROD_07661" FT /note="15 probable transmembrane helices predicted for FT ROD07661 by TMHMM2.0 at aa 5-27, 31-48, 55-73, 83-105, FT 112-134, 149-166, 183-205, 220-242, 274-293, 297-314, FT 327-349, 364-381, 394-416, 421-439 and 446-468" FT CDS 843229..845493 FT /transl_table=11 FT /locus_tag="ROD_07671" FT /product="putative aconitase" FT /db_xref="GOA:D2TPH5" FT /db_xref="InterPro:IPR000573" FT /db_xref="InterPro:IPR001030" FT /db_xref="InterPro:IPR015928" FT /db_xref="InterPro:IPR015931" FT /db_xref="InterPro:IPR015932" FT /db_xref="InterPro:IPR015935" FT /db_xref="InterPro:IPR015937" FT /db_xref="UniProtKB/TrEMBL:D2TPH5" FT /protein_id="CBG87544.1" FT /translation="MIKLYEKGIYLSDNNAIIAEEHYSGAVRKDDAKKGTIAWSILAAH FT NTSGDMRKLKIKFDALTSHDITFVGIIQTAKASGMERFPLPYVLTNCHNSLCAVGGTIN FT GDDHQFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAIG FT EGGGELVKQLLNDTWDCDYPGVVAVWLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVM FT EFVGPGIRNLSADFRNSVDVMTTETTCLSSVWQTDEEIQQWLALHGREEAYRPLAPQPL FT AYYDGCISVDLSAIRPMIALPFHPSNVYEIATLQENLSDILHQVEVDAQRIAQGKAGLS FT LLDKIENGRLKVQQGIIAGCSGGNYENVVAAANALRGHSCGDDAFSLSVYPSSQPVFMA FT LAKQGMVSDLMGAGAIIRTAFCGPCFGAGDTPVNNGLSIRHTTRNFPNREGSKPGNGQM FT SAVALMDARSVAATAANGGVLTAATELDCWDNVPAYRFDPAPYQNRVYQGFVKGATAQP FT LIYGPNIKDWPEMGALTDNILLKVCAKILDEVTTTDELIPSGETSSYRSNPVGLAEFTL FT SRRVPEYVGRSKAVAALEKRRRAGETDELAPVFAGIRQIAGQERVVAAETGIGSVIYAV FT KPGDGSAREQAASCQRVIGGLANIAQEYATKRYRSNVINWGMLPLQMAEAPLFEVDDYI FT YIPGIRAALERCGEKMTAWVIRDGAPVGEISLYMESLTAEEREIIKAGSLINFNRARLT FT P" FT misc_feature 843334..844656 FT /locus_tag="ROD_07671" FT /note="HMMPfam hit to PF00330, Aconitase/3-isopropylmalate FT dehydratase large subunit, alpha/beta/alpha, score 2.1e-17" FT /inference="protein motif:PFAM:PF00330" FT misc_feature 844927..845283 FT /locus_tag="ROD_07671" FT /note="HMMPfam hit to PF00694, Aconitase A/isopropylmalate FT dehydratase small subunit, swivel, score 0.037" FT /inference="protein motif:PFAM:PF00694" FT CDS complement(845581..846864) FT /transl_table=11 FT /locus_tag="ROD_07681" FT /product="acyl-CoA thioester hydrolase" FT /EC_number="3.1.2.-" FT /db_xref="GOA:D2TPH6" FT /db_xref="InterPro:IPR000070" FT /db_xref="InterPro:IPR011050" FT /db_xref="InterPro:IPR012334" FT /db_xref="InterPro:IPR018040" FT /db_xref="UniProtKB/TrEMBL:D2TPH6" FT /protein_id="CBG87545.1" FT /translation="MNTSSVSRLALALAFGVTLTACSSTPPDQIPSDQTAPGTASRPIL FT SASEAQNFVAKHYFSSLTPNTAPWTPSAINLPAQPDFVVGPAGTSGVTHTTIQAAVDAA FT ITTRTNRRLYIAIMPGEYPGTVYIPAAPGSLTLYGTGDKPLDVKIGAAIDGQMGTSDWR FT RVVNPGGKYMPGKPAWYMFDSCQSKRSASIGMMCSAVLWSQNNGLQLQNLTVENNLGDS FT VDAGNHPAVALRSDGDKVQINNVNILGRQNTFFVTNSGVQNRLVNDRQTRTLVTNSYIE FT GDVDIVSGRGAVVFDNTDFRVVNSRTQQEAYVFAPATLSNIYYGFLATNSRFTAAGDGV FT AQLGRSLDVDSNTNGQVVIRDSVINEGFNLAKPWADAVISGRPFAGNTGTQDEKGEIQR FT NLNDASFNRMWEYNNRGVGSKVLAEPKQ" FT misc_feature complement(845650..846624) FT /locus_tag="ROD_07681" FT /note="HMMPfam hit to PF01095, Pectinesterase, catalytic, FT score 2.5e-07" FT /inference="protein motif:PFAM:PF01095" FT misc_feature complement(845998..846027) FT /note="PS00503 Pectinesterase signature 2." FT /inference="protein motif:Prosite:PS00503" FT misc_feature complement(846331..846390) FT /note="PS00800 Pectinesterase signature 1." FT /inference="protein motif:Prosite:PS00800" FT sig_peptide complement(846796..846864) FT /locus_tag="ROD_07681" FT /note="Signal peptide predicted for ROD07681 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.844 between residues 23 and 24" FT misc_feature complement(846799..846831) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 847088..848311 FT /transl_table=11 FT /gene="hutI" FT /locus_tag="ROD_07691" FT /product="imidazolonepropionase" FT /db_xref="GOA:D2TPH7" FT /db_xref="InterPro:IPR005920" FT /db_xref="InterPro:IPR011059" FT /db_xref="UniProtKB/TrEMBL:D2TPH7" FT /protein_id="CBG87546.1" FT /translation="MPQLLPDDTVWRNIRLATLNPDITVPYGLLEDHALVVRGETIVAV FT VPQAQLPTSHANTRDMQGRLVTPGLIDCHTHLIFGGNRASEWEQRLNGVSYQQISAQGG FT GINASVSATRKASEDELYRIARPRMQRLAGEGVTLLEVKSGYGLNVANEEKMLRVAARL FT AAENVMEISPTLLAAHATPTEYRDDPDGYLSLVCDTLLPQLWEKGLFETVDLFCESVGF FT SVAQSERVFRAAQALGIPVKGHVEQLSLLGGAQLVSRYRGRSADHIEYLDEAGVAAMSR FT SGTVGVLLPGAFYFLREKQTPPIDLLRRYRVPMAVATDFNPGTSPFISLHLAMNMACVQ FT FGLTPEEAWAGVTRHAACALGREATHGQLAAGYVADFNVWEAAHPVEIVYEPGRNPLYQ FT RIYRGQAG" FT misc_feature 847280..848230 FT /gene="hutI" FT /locus_tag="ROD_07691" FT /note="HMMPfam hit to PF01979, Amidohydrolase 1, score FT 9.3e-05" FT /inference="protein motif:PFAM:PF01979" FT CDS 848308..849249 FT /transl_table=11 FT /gene="hutG" FT /locus_tag="ROD_07701" FT /product="formiminoglutamase" FT /db_xref="GOA:D2TPH8" FT /db_xref="InterPro:IPR005923" FT /db_xref="InterPro:IPR006035" FT /db_xref="InterPro:IPR020855" FT /db_xref="InterPro:IPR023696" FT /db_xref="UniProtKB/TrEMBL:D2TPH8" FT /protein_id="CBG87547.1" FT /translation="MTQWQAVSPELWQGRDDSAEAASARRLFQTVAVSSAFAPEDYRDR FT IALLGFACDEGVKRNHGRPGAAAGPDALRKALANLASHAGHDRLVDLGNLLAPSPDLEG FT AQQALRQAAQRCLEASVRTFVLGGGHETAFGHGAGVLDAFPSARVGIINCDAHLDLRYA FT ERATSGTPFRQLAQLCEQQQREFHYACLGVSRAANTLALWEEAARRRVTIVEDLHCDNA FT QAALAAFIGRVDKLYLTVDLDVLPAAEMPAVSAPAAPGVPLLTLLRLIEPVCRSGKLQA FT VDMVEFNPRFDNDGRAARVAARLAWQIIHWWQ" FT misc_feature 848431..849246 FT /gene="hutG" FT /locus_tag="ROD_07701" FT /note="HMMPfam hit to PF00491, Ureohydrolase, score FT 1.1e-08" FT /inference="protein motif:PFAM:PF00491" FT misc_feature 848683..848724 FT /note="PS00147 Arginase family signature 1." FT /inference="protein motif:Prosite:PS00147" FT misc_feature 849022..849087 FT /note="PS01053 Arginase family signature 3." FT /inference="protein motif:Prosite:PS01053" FT CDS 849338..850063 FT /transl_table=11 FT /gene="hutC" FT /locus_tag="ROD_07711" FT /product="histidine utilization repressor" FT /db_xref="GOA:D2TPH9" FT /db_xref="InterPro:IPR000524" FT /db_xref="InterPro:IPR010248" FT /db_xref="InterPro:IPR011663" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TPH9" FT /protein_id="CBG87548.1" FT /translation="MTLLRSRSAPAPFYETVKREISEKIASGVWQPHDRIPSEAELVAQ FT YGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEIRSIADEIASRSHQHHC FT EVLALEKTRANVMQAAALGVPEGTAIFHSVMVHFENALPVQIEDRCVNAQSVPDYLAQD FT YSQTTPHAWLSQAAPLSEGEHIVEAVRATAQECALLDINENEPCLLIRRTTWSAGQIVS FT HARLLYPGSRYRLQGHFTS" FT misc_feature 849374..849565 FT /gene="hutC" FT /locus_tag="ROD_07711" FT /note="HMMPfam hit to PF00392, Bacterial regulatory protein FT GntR, HTH, score 5.2e-29" FT /inference="protein motif:PFAM:PF00392" FT misc_feature 849443..849517 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT /inference="protein motif:Prosite:PS00043" FT misc_feature 849446..849511 FT /note="Predicted helix-turn-helix motif with score FT 1163.000, SD 3.15 at aa 37-58, sequence FT PSEAELVAQYGFSRMTINRALR" FT misc_feature 849626..850039 FT /gene="hutC" FT /locus_tag="ROD_07711" FT /note="HMMPfam hit to PF07702, UbiC transcription FT regulator-associated, score 6.6e-46" FT /inference="protein motif:PFAM:PF07702" FT CDS 850240..851925 FT /transl_table=11 FT /gene="hutU" FT /locus_tag="ROD_07721" FT /product="urocanate hydratase" FT /db_xref="GOA:D2TPI0" FT /db_xref="InterPro:IPR000193" FT /db_xref="InterPro:IPR023636" FT /db_xref="InterPro:IPR023637" FT /db_xref="UniProtKB/TrEMBL:D2TPI0" FT /protein_id="CBG87549.1" FT /translation="MSHSKYRQQTIRAPRGPGLTAKSWLTEAPLRMFLNNLDPDVAENP FT HELVVYGGIGRAARNWECFDAIVKALTGLEDDETLLVQSGKPVGVFKTHSNAPRVLIAN FT SNLVPRWATWEHFNELDAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYHGD FT LRGRWVLTAGLGGMGGAQPLAATLAGACSLNIECQQSRIDFRLRTRYVDEQAASLDDAL FT ARIEKYTGEGRAVSVALCANAADILPELVKRGVRPDLVTDQTSAHDPLHGYLPSGWRWE FT EYQQKAVTDPQGVTEAAKRSMAKHVQAMLAFHQMGVPTFDYGNNIRQMAQEMGVENAFA FT FPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIVADDPHLHRWLDMARER FT ISFQGLPARICWVGLGLRQKLGLAFNEMVRSGELSAPIVIGRDHLDSGSVASPNRETEA FT MRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHAGMVIVCDGSDDAAARI FT ARVLHNDPATGVMRHADAGYDIAVECAVEHHLNLPMVAATQGKR" FT misc_feature 850243..851904 FT /gene="hutU" FT /locus_tag="ROD_07721" FT /note="HMMPfam hit to PF01175, Urocanase, score 0" FT /inference="protein motif:PFAM:PF01175" FT misc_feature 850780..850812 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 851443..851472 FT /note="PS01233 Urocanase active site." FT /inference="protein motif:Prosite:PS01233" FT CDS 851927..853447 FT /transl_table=11 FT /gene="hutH" FT /locus_tag="ROD_07731" FT /product="histidine ammonia-lyase" FT /db_xref="GOA:D2TPI1" FT /db_xref="InterPro:IPR001106" FT /db_xref="InterPro:IPR005921" FT /db_xref="InterPro:IPR008948" FT /db_xref="InterPro:IPR022313" FT /db_xref="InterPro:IPR024083" FT /db_xref="UniProtKB/TrEMBL:D2TPI1" FT /protein_id="CBG87550.1" FT /translation="MNTMTLMPGHLNFTQLREVWQQPVRLRLDASAIDGINASVACVET FT IVAEGRTAYGINTGFGLLAQTRIANEDLQNLQRSLVLSHAAGVGEPLDEAMVRLIMVLK FT INSLARGYSGIRLSVIEALIALVNADVYPYIPAKGSVGASGDLAPLAHMSLTLLGEGLA FT RWQGEWLPAKAALQKAGLTPIALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVC FT GALTTEAVLGSRRPFDARIHAARGQRGQIDAAALYRHLLTDTSALAQSHRNCDKVQDPY FT SLRCQPQVMGACLTQMRQVQEVLLAEANAVSDNPLVFAAQGEVISGGNFHAEPVAMAAD FT NLALAIAEIGSLSERRIALMMDKHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKAL FT AHPHSVDSLPTSANQEDHVSMAPAAGRRLWEMAANTRGVVAVEWLAACQGIDLREGLTS FT SPLLEQARATLRERVSHYSDDRFFAPDIACATELLAQGALLRLVPAFL" FT misc_feature 851933..853360 FT /gene="hutH" FT /locus_tag="ROD_07731" FT /note="HMMPfam hit to PF00221, Phenylalanine/histidine FT ammonia-lyase, score 2.6e-255" FT /inference="protein motif:PFAM:PF00221" FT misc_feature 852341..852388 FT /note="PS00488 Phenylalanine and histidine ammonia-lyases FT signature." FT /inference="protein motif:Prosite:PS00488" FT CDS complement(853553..854029) FT /transl_table=11 FT /locus_tag="ROD_07741" FT /product="putative phosphatidylethanolamine-binding FT protein" FT /db_xref="InterPro:IPR005247" FT /db_xref="InterPro:IPR008914" FT /db_xref="UniProtKB/TrEMBL:D2TPI2" FT /protein_id="CBG87551.1" FT /translation="MKLISNDLRDGDKLPLRHVFNGMGYEGDNISPHLAWDEVPAGTKS FT FVVTCFDPDAPTGSGWWHWVVANLPADTRVLTQGFGSGLVAVPDGVVQTRTDFGKAGYG FT GAAPPRGETHRYIFTVHALDVERIEVDEESSGAMVGFNVHFHSLASASLTAMFS" FT misc_feature complement(853556..854002) FT /locus_tag="ROD_07741" FT /note="HMMPfam hit to PF01161, PEBP, score 8.9e-07" FT /inference="protein motif:PFAM:PF01161" FT CDS complement(854087..855376) FT /transl_table=11 FT /gene="bioA" FT /locus_tag="ROD_07751" FT /product="adenosylmethionine-8-amino-7-oxononanoate FT aminotransferase" FT /EC_number="2.6.1.62" FT /db_xref="GOA:D2TPI3" FT /db_xref="InterPro:IPR005814" FT /db_xref="InterPro:IPR005815" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015422" FT /db_xref="InterPro:IPR015424" FT /db_xref="UniProtKB/TrEMBL:D2TPI3" FT /protein_id="CBG87552.1" FT /translation="MTTDDLAFDRRHIWHPYTSMTSPLPVFPVERAEGCELILSGGERL FT VDGMSSWWAAIHGYNHPQLNAAMKTQIDAMSHVMFGGITHAPAIELCRKLVAMTPAPLE FT CVFLADSGSVAVEVAMKMALQYWQAKGESRQRFLTFRNGYHGDTFGAMSVCDPHNSMHS FT LWKGYLAENLFAPAPQSRMGGEWDERDMVAFARLMAAHRHEIAAVILEPIVQGAGGMRI FT YHPQWLQRIRQMCDREGILLIADEIATGFGRTGRLFACEHAGIAPDILCLGKALTGGTM FT TLSATLTSRQVAETISNGEAGCFMHGPTFMGNPLACAVANASLTLLESGDWRRQVAAIE FT AQLREELAPAADSPQVADVRVLGAIGVVETTRPVNIAALQQFFVRQGVWVRPFGKLIYL FT MPPYIIQPEQLRRLTQAVNEAVREETFFSV" FT misc_feature complement(854261..855295) FT /gene="bioA" FT /locus_tag="ROD_07751" FT /note="HMMPfam hit to PF00202, Aminotransferase class-III, FT score 2.5e-147" FT /inference="protein motif:PFAM:PF00202" FT misc_feature complement(854540..854653) FT /note="PS00600 Aminotransferases class-III FT pyridoxal-phosphate attachment site." FT /inference="protein motif:Prosite:PS00600" FT CDS 855453..856493 FT /transl_table=11 FT /gene="bioB" FT /locus_tag="ROD_07761" FT /product="biotin synthetase" FT /EC_number="2.8.1.6" FT /db_xref="GOA:D2TPI4" FT /db_xref="InterPro:IPR002684" FT /db_xref="InterPro:IPR006638" FT /db_xref="InterPro:IPR007197" FT /db_xref="InterPro:IPR010722" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR024177" FT /db_xref="UniProtKB/TrEMBL:D2TPI4" FT /protein_id="CBG87553.1" FT /translation="MTNHSRWTLSQVTELFEKPLLELLFEAQQIHRQHFDPRQVQVSTL FT LSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLDSARKAKNAGSTRFCMGAAWKN FT PHERDMPFLEQMVQGVKAMGLEACMTLGALSESQAQRLAAAGLDYYNHNLDTSPEFYGN FT IITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPIN FT MLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPASYVRLSAGREQMNEQTQAMCFMAGA FT NSIFYGCKLLTTPNPEEDNDLRLFRKLGLNPQQTAVLAGDNEQQQRLEQALRTPDTDAY FT YNAAAV" FT misc_feature 855591..856079 FT /gene="bioB" FT /locus_tag="ROD_07761" FT /note="HMMPfam hit to PF04055, Radical SAM, score 2.7e-24" FT /inference="protein motif:PFAM:PF04055" FT misc_feature 856110..856388 FT /gene="bioB" FT /locus_tag="ROD_07761" FT /note="HMMPfam hit to PF06968, Biotin and thiamin synthesis FT associated, score 4.8e-52" FT /inference="protein motif:PFAM:PF06968" FT misc_feature 856284..856316 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 856490..857647 FT /transl_table=11 FT /gene="bioF" FT /locus_tag="ROD_07771" FT /product="8-amino-7-oxononanoate synthase" FT /EC_number="2.3.1.47" FT /db_xref="GOA:D2TPI5" FT /db_xref="InterPro:IPR001917" FT /db_xref="InterPro:IPR004723" FT /db_xref="InterPro:IPR004839" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015422" FT /db_xref="InterPro:IPR015424" FT /db_xref="InterPro:IPR022834" FT /db_xref="UniProtKB/TrEMBL:D2TPI5" FT /protein_id="CBG87554.1" FT /translation="MSWQQKIDDALAARRAADALRHRCTVEQGTGRWLIAGQRRFLNFS FT SNDYLGLSRHPHIIRAWQQGAERFGVGSGGSGHVSGYSVAHQRLEAALADWLGYPRALL FT FISGFAANQAVIAALMAKDDRIVADRLSHASLLEAANLSPAQLRRFTHNDPQHLARLLD FT APCAGQQLAITEGVFSMDGDSAPLAAIHRAAGQRNAWLLVDDAHGIGVCGEEGRGSCWR FT QQVKPELLVVTFGKGFGVSGAAVLCAESVADYLLQFARHLIYSTSMPPAQAQALSAALA FT VIRGEEGDARRARLSALIARFRRGVDHSRFRLAESDSAIQPLIVGDNARALQLADALRG FT KGFWVTAIRPPTVPTGTARLRLTLTEAHQPADIDRLLEALHDAGE" FT misc_feature 856604..857629 FT /gene="bioF" FT /locus_tag="ROD_07771" FT /note="HMMPfam hit to PF00155, Aminotransferase, class I FT and II, score 2.3e-81" FT /inference="protein motif:PFAM:PF00155" FT misc_feature 856880..856945 FT /note="Predicted helix-turn-helix motif with score FT 1084.000, SD 2.88 at aa 131-152, sequence FT LSHASLLEAANLSPAQLRRFTH" FT misc_feature 857186..857215 FT /note="PS00599 Aminotransferases class-II FT pyridoxal-phosphate attachment site." FT /inference="protein motif:Prosite:PS00599" FT CDS 857631..858386 FT /transl_table=11 FT /gene="bioC" FT /locus_tag="ROD_07781" FT /product="biotin synthesis protein" FT /db_xref="GOA:D2TPI6" FT /db_xref="InterPro:IPR011814" FT /db_xref="InterPro:IPR013216" FT /db_xref="UniProtKB/TrEMBL:D2TPI6" FT /protein_id="CBG87555.1" FT /translation="MTQVNKQAIAAAFGRAAGQYEQHAQLQRLSAEALLALLPQRTYEQ FT VLDAGCGPGLLSRYWRARGSMVAALDLSSQMLNEARRQNRAHYYLAGDIESLPLAEATF FT DLAWSNLAVQWCNDLRGALSELYRVARPGGKVAFTTLANGSLPELRQAWRAVDNQHHAN FT RFLPQTALHDALRGWRSESRLQSITLWFDDPLSAMRSLKGIGATHLHGGREARVLSRAQ FT LQTLRLAWPQRQGKYPLTYHFFAGVIERD" FT misc_feature 857769..858044 FT /gene="bioC" FT /locus_tag="ROD_07781" FT /note="HMMPfam hit to PF08241, Methyltransferase type 11, FT score 2.3e-34" FT /inference="protein motif:PFAM:PF08241" FT CDS 858379..859065 FT /transl_table=11 FT /gene="bioD" FT /locus_tag="ROD_07791" FT /product="dethiobiotin synthetase" FT /EC_number="6.3.3.3" FT /db_xref="GOA:D2TPI7" FT /db_xref="InterPro:IPR002586" FT /db_xref="InterPro:IPR004472" FT /db_xref="UniProtKB/TrEMBL:D2TPI7" FT /protein_id="CBG87556.1" FT /translation="MTERYFVTGTDTEVGKTVVSCALLQAAGRAGLCTAGYKPVASGSD FT MTPLGQRNSDALALQRRSSLPLEYAAVNPYTFAEPTSPHIVSAEEGRPIEAGVMSAGLR FT ALETQAEWVLVEGAGGWFTPLAANFTFADWVQAEQLPVILVVGVKLGCINHALLTAQAV FT RQAGLTLAGWVANNLQPPGKRHREYMAALSQMIPAPLLGEIPWLAVNAESAATGQYLDL FT SRLSGK" FT misc_feature 858391..859050 FT /gene="bioD" FT /locus_tag="ROD_07791" FT /note="HMMPfam hit to PF01656, Cobyrinic acid a,c-diamide FT synthase, score 2.2e-24" FT /inference="protein motif:PFAM:PF01656" FT CDS 859630..861651 FT /transl_table=11 FT /gene="uvrB" FT /locus_tag="ROD_07801" FT /product="UvrABC system protein B (excinuclease ABC subunit FT B)" FT /db_xref="GOA:D2TPI8" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001943" FT /db_xref="InterPro:IPR004807" FT /db_xref="InterPro:IPR006935" FT /db_xref="InterPro:IPR009055" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR024759" FT /db_xref="UniProtKB/TrEMBL:D2TPI8" FT /protein_id="CBG87557.1" FT /translation="MSKPFKLNSAFKPSGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGK FT TFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPS FT SDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTV FT GMIIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE FT RLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERILQAMEEIKDELGERRKSLLANNKLL FT EEQRLSQRTQFDLEMMNELGYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDES FT HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY FT ELEKSGGDVVDQVVRPTGLLDPVIEVRPVATQVDDLLSEIRARASINERVLVTTLTKRM FT AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL FT VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITASMAKAISETERRREKQQ FT QYNAEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRSTAKADSVEMDMSPKALQQK FT IHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS" FT misc_feature 859678..859881 FT /gene="uvrB" FT /locus_tag="ROD_07801" FT /note="HMMPfam hit to PF04851, Restriction endonuclease, FT type I, R subunit/Type III, Res subunit, score 1.4e-09" FT /inference="protein motif:PFAM:PF04851" FT misc_feature 859744..859767 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 861022..861267 FT /gene="uvrB" FT /locus_tag="ROD_07801" FT /note="HMMPfam hit to PF00271, DNA/RNA helicase, FT C-terminal, score 7.5e-21" FT /inference="protein motif:PFAM:PF00271" FT misc_feature 861526..861633 FT /gene="uvrB" FT /locus_tag="ROD_07801" FT /note="HMMPfam hit to PF02151, UvrB/UvrC protein, score FT 3.1e-14" FT /inference="protein motif:PFAM:PF02151" FT CDS complement(861875..862783) FT /transl_table=11 FT /locus_tag="ROD_07811" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR002882" FT /db_xref="InterPro:IPR010119" FT /db_xref="UniProtKB/TrEMBL:D2TPI9" FT /protein_id="CBG87558.1" FT /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLSSRLTGIVTTTDNG FT GSTGRIRRAEGGIAWGDMRNCLNQLITEPSVPSAMFEYRFGGNGELSGHNLGNLMLKAL FT DHLSVRPLEAINLIRNLLKVDAHLIPMSELPVDLMAIDDQGHEVYGEVNIDQLTARPQE FT LMLSPNVPATREAVQAINEADLILIGPGSFYTSLMPILLVSDLAQALRRTQAPMVYIGN FT LGRELSLPAASLTLADKLAIMEQYVGKRVIDAVVVGPKVDVSAVSDRVVIQAVLEASDI FT PYRHDRQLLHSALEKAVQALG" FT misc_feature complement(861878..862750) FT /locus_tag="ROD_07811" FT /note="HMMPfam hit to PF01933, Protein of unknown function FT UPF0052 and CofD, score 8.5e-129" FT /inference="protein motif:PFAM:PF01933" FT CDS 863180..864169 FT /transl_table=11 FT /gene="moaA" FT /locus_tag="ROD_07821" FT /product="molybdenum cofactor biosynthesis protein A" FT /db_xref="GOA:D2TPJ0" FT /db_xref="InterPro:IPR000385" FT /db_xref="InterPro:IPR006638" FT /db_xref="InterPro:IPR007197" FT /db_xref="InterPro:IPR010505" FT /db_xref="InterPro:IPR013483" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:D2TPJ0" FT /protein_id="CBG87559.1" FT /translation="MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPGGVTNNG FT FLSVDEIRRVTRAFANLGTEKVRLTGGEPSLRRDFTDIIAAVRENAAIRQIAVTTNGYR FT LARDAAHWRDAGLTGINVSVDSLDARQFHAITGQDKFQQVMAGIDAAFDAGFDKVKVNT FT VLMRDVNHHQLDTFLNWIQTRPIQLRFIELMETGQGSELFRKHHISGQVLRDELLKRGW FT IHQLRQRSDGPAQVFCHPDYVGEIGLIMPYEKDFCATCNRLRVSSVGKLHLCLFGDGGI FT SLRDLLVEDNQQAALEARIALALREKKQTHFLHQNNTGITQNLSYIGG" FT misc_feature 863231..863722 FT /gene="moaA" FT /locus_tag="ROD_07821" FT /note="HMMPfam hit to PF04055, Radical SAM, score 1.1e-38" FT /inference="protein motif:PFAM:PF04055" FT misc_feature 863237..863272 FT /note="PS01305 moaA / nifB / pqqE family signature." FT /inference="protein motif:Prosite:PS01305" FT misc_feature 863735..864118 FT /gene="moaA" FT /locus_tag="ROD_07821" FT /note="HMMPfam hit to PF06463, Molybdenum cofactor FT synthesis C-terminal, score 7e-47" FT /inference="protein motif:PFAM:PF06463" FT CDS 864188..864700 FT /transl_table=11 FT /gene="moaB" FT /locus_tag="ROD_07831" FT /product="molybdenum cofactor biosynthesis protein B" FT /db_xref="GOA:D2TPJ1" FT /db_xref="InterPro:IPR001453" FT /db_xref="InterPro:IPR008284" FT /db_xref="InterPro:IPR012245" FT /db_xref="InterPro:IPR013484" FT /db_xref="InterPro:IPR020817" FT /db_xref="UniProtKB/TrEMBL:D2TPJ1" FT /protein_id="CBG87560.1" FT /translation="MSQVSAEFIPTRIAILTVSNRRGEEDDTSGHFLRDAAQEAGHQVV FT DKAIVKENRYAIRARVSAWIASENVQVVLITGGTGLTEGDQAPEALLPLFDREVEGFGE FT VFRMLSFEEIGTATLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTRPCN FT FHPHLKK" FT misc_feature 864227..864658 FT /gene="moaB" FT /locus_tag="ROD_07831" FT /note="HMMPfam hit to PF00994, Molybdopterin binding, score FT 6.7e-44" FT /inference="protein motif:PFAM:PF00994" FT misc_feature 864401..864442 FT /note="PS01078 Molybdenum cofactor biosynthesis proteins FT signature 1." FT /inference="protein motif:Prosite:PS01078" FT CDS 864703..865188 FT /transl_table=11 FT /gene="moaC" FT /locus_tag="ROD_07841" FT /product="molybdenum cofactor biosynthesis protein C" FT /db_xref="GOA:D2TPJ2" FT /db_xref="InterPro:IPR002820" FT /db_xref="InterPro:IPR023045" FT /db_xref="InterPro:IPR023046" FT /db_xref="UniProtKB/TrEMBL:D2TPJ2" FT /protein_id="CBG87561.1" FT /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMII FT DGSHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLQAEPEHNRVRIESLCR FT LTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKADADD" FT misc_feature 864745..865152 FT /gene="moaC" FT /locus_tag="ROD_07841" FT /note="HMMPfam hit to PF01967, Molybdopterin cofactor FT biosynthesis MoaC region, score 4.8e-96" FT /inference="protein motif:PFAM:PF01967" FT CDS 865181..865426 FT /transl_table=11 FT /gene="moaD" FT /locus_tag="ROD_07851" FT /product="molybdopterin converting factor, subunit 1" FT /db_xref="GOA:D2TPJ3" FT /db_xref="InterPro:IPR003749" FT /db_xref="InterPro:IPR010034" FT /db_xref="InterPro:IPR012675" FT /db_xref="InterPro:IPR016155" FT /db_xref="UniProtKB/TrEMBL:D2TPJ3" FT /protein_id="CBG87562.1" FT /translation="MIKVLFFAQVRELVGTDTLEVADDFPTVSALRQHLAANGGRWALA FT LEDGKLLAAVNQTLVSFDHPLSAGDEVAFFPPVTGG" FT misc_feature 865190..865423 FT /gene="moaD" FT /locus_tag="ROD_07851" FT /note="HMMPfam hit to PF02597, ThiamineS, score 2.3e-29" FT /inference="protein motif:PFAM:PF02597" FT CDS 865428..865880 FT /transl_table=11 FT /gene="moaE" FT /locus_tag="ROD_07861" FT /product="molybdopterin converting factor, subunit 2" FT /db_xref="GOA:D2TPJ4" FT /db_xref="InterPro:IPR003448" FT /db_xref="UniProtKB/TrEMBL:D2TPJ4" FT /protein_id="CBG87563.1" FT /translation="MAETKIVVDPAPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLGD FT NVKALTLEHYPGMTEKALGEIVTEARARWPLGRVTVIHRIGELWPGDEIVFVGVTSAHR FT SSAFEAGQFIMDYLKTRAPFWKREATPEGERWVEARDSDRQAAKRW" FT misc_feature 865440..865793 FT /gene="moaE" FT /locus_tag="ROD_07861" FT /note="HMMPfam hit to PF02391, Molybdopterin biosynthesis FT MoaE, score 3.2e-60" FT /inference="protein motif:PFAM:PF02391" FT CDS 865931..866635 FT /transl_table=11 FT /locus_tag="ROD_07871" FT /product="putative membrane protein" FT /db_xref="GOA:D2TPJ5" FT /db_xref="InterPro:IPR006214" FT /db_xref="UniProtKB/TrEMBL:D2TPJ5" FT /protein_id="CBG87564.1" FT /translation="MDRFPRSDSIVQTRSGLQTYMAQVYGWMTVGLLLTAFIAWYASHS FT AAFIELLYTNRLFFFGLVIAQLAVVFVLSGLINRLSAGVMTTLFMLYSALTGLTLSSIF FT IIYTASSIASTFVVSGGMFGVMSLWGYTTKRDLSSWGNILFMALIGIILASLVNFWLKS FT EALMWAVTYIGVVVFVALTAYDTQKLKNIGEQIDVRDSSNLRKYSILGALTLYLDFINL FT FLMLLRIFGNRR" FT misc_feature 865967..866632 FT /locus_tag="ROD_07871" FT /note="HMMPfam hit to PF01027, Protein of unknown function FT UPF0005, score 5.2e-49" FT /inference="protein motif:PFAM:PF01027" FT misc_feature join(865988..866056,866099..866158,866192..866251, FT 866264..866323,866342..866410,866423..866482, FT 866555..866623) FT /locus_tag="ROD_07871" FT /note="7 probable transmembrane helices predicted for FT ROD07871 by TMHMM2.0 at aa 20-42, 57-76, 88-107, 112-131, FT 138-160, 165-184 and 209-231" FT CDS complement(866844..867806) FT /transl_table=11 FT /locus_tag="ROD_07881" FT /product="putative exported protein" FT /db_xref="InterPro:IPR022791" FT /db_xref="UniProtKB/TrEMBL:D2TPJ6" FT /protein_id="CBG87565.1" FT /translation="MAKSHPRWRLAKKILTWLFFIAVIVLLVIYAKKVNWEDVWTVIRD FT YNRTALLSVVALVIVSYLLYGCYDLLGRAYCGHKLAKRQVMLVSFICYAFNLTLSTWVG FT GIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLGGIIFTFGVVQLPAHWYIDEST FT LRILGVVLLLMIAVYLWFCAFAKRRHMTIKGQKLVLPSWKFALVQMVISSANWMAMGLI FT IWLLMGQGVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGERTSQGTIIAAL FT LAYRVLYYFIPLLLALICYLVLESRAKKLRAKNEKAMAK" FT misc_feature complement(join(866898..866966,867042..867110, FT 867129..867197,867255..867323,867360..867428, FT 867486..867554,867591..867659,867717..867770)) FT /locus_tag="ROD_07881" FT /note="8 probable transmembrane helices predicted for FT ROD07881 by TMHMM2.0 at aa 13-30, 50-72, 85-107, 127-149, FT 162-184, 204-226, 233-255 and 281-303" FT misc_feature complement(867423..867488) FT /note="Predicted helix-turn-helix motif with score FT 1112.000, SD 2.97 at aa 107-128, sequence FT GMRYRLYSRLGLPGSTITRIFS" FT misc_feature complement(867606..867638) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT sig_peptide complement(867714..867806) FT /locus_tag="ROD_07881" FT /note="Signal peptide predicted for ROD07881 by SignalP 2.0 FT HMM (Signal peptide probability 0.670) with cleavage site FT probability 0.604 between residues 31 and 32" FT CDS complement(867806..869047) FT /transl_table=11 FT /locus_tag="ROD_07891" FT /product="putative phospholipase" FT /db_xref="GOA:D2TPJ7" FT /db_xref="InterPro:IPR001736" FT /db_xref="UniProtKB/TrEMBL:D2TPJ7" FT /protein_id="CBG87566.1" FT /translation="MKCGWREGNQIQLLENGDQFYPAVFEAIAEAEQRIILESFIWFED FT NVGKQLHAALLKAAKRGVQAEVLLDGYGSPDLSDEFVGELTAAGVVFRYYDPRARVFGM FT RTNVFRRMHRKIVVIDGKVAFVGGINYSDEHMSDYGPEAKQDYAVRVEGPIVADILQFE FT VENLPGQSATRRWWKRYHQAVENHQPGEAQVLFVWRDNEEHRDDIERHYLKMLTQARRE FT VIIANAYFFPGYRLLHAMRNAARRGVRVKLIVQGEPDMPIVKVGARLLYNYLVKGGVQV FT YEYRRKPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANLIIHDRQFNQTLRDNLNAII FT RQDCKQVDETMLPKRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPRLAQVDPPAQPEME FT TQDRVEAQDTGAKS" FT misc_feature complement(868112..868195) FT /locus_tag="ROD_07891" FT /note="HMMPfam hit to PF00614, Phospholipase FT D/Transphosphatidylase, score 1.4" FT /inference="protein motif:PFAM:PF00614" FT misc_feature complement(868643..868726) FT /locus_tag="ROD_07891" FT /note="HMMPfam hit to PF00614, Phospholipase FT D/Transphosphatidylase, score 6.1e-09" FT /inference="protein motif:PFAM:PF00614" FT CDS complement(869044..869805) FT /transl_table=11 FT /locus_tag="ROD_07901" FT /product="putative endonuclease/exonuclease/phosphatase" FT /db_xref="GOA:D2TQA1" FT /db_xref="InterPro:IPR005135" FT /db_xref="UniProtKB/TrEMBL:D2TQA1" FT /protein_id="CBG87567.1" FT /translation="MTGQTQRFSFKVLTINTHKGFTAFNKRFILPELRDAVRTVGADIV FT CLQEVLGAHEVHPLHVENWPDTTHYEFLADTMWSDYAYGRNAVYPEGHHGNAVLSRYPI FT EHYENRDVSVAGGEKRGVLYCRIVPPQLDRPIHVMCVHLGLREAHRQAQLKMLADWVNA FT LPDGEPVVVAGDFNDWRQKASLPLKKTAGLDEIFTHAHGRPARTFPVSLPLLPLDRIYV FT KNANTSSPTVLPLRSWRHLSDHAPLSAEIHL" FT misc_feature complement(869053..869778) FT /locus_tag="ROD_07901" FT /note="HMMPfam hit to PF03372, FT Endonuclease/exonuclease/phosphatase, score 1.4e-30" FT /inference="protein motif:PFAM:PF03372" FT CDS 869937..870347 FT /transl_table=11 FT /locus_tag="ROD_07911" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR021303" FT /db_xref="UniProtKB/TrEMBL:D2TQA2" FT /protein_id="CBG87568.1" FT /translation="MKWQQRIRVATGLSCWQIMLHLLVVAMLVMGWMSGTLVRVGLGLC FT VVYGVTVLLMLALQRHHEQRWRDVADVLEELTTTWYFGASLIVLWLLSRVLQNNFLLAL FT AGVVILAGPAVVSLLAKDKKLHDFASKHRIRR" FT misc_feature join(869973..870032,870042..870110,870171..870224, FT 870234..870293) FT /locus_tag="ROD_07911" FT /note="4 probable transmembrane helices predicted for FT ROD07911 by TMHMM2.0 at aa 13-32, 36-58, 79-96 and 100-119" FT CDS complement(870309..871415) FT /transl_table=11 FT /locus_tag="ROD_07921" FT /product="ABC transporter, permease protein" FT /db_xref="GOA:D2TQA3" FT /db_xref="InterPro:IPR000412" FT /db_xref="InterPro:IPR013526" FT /db_xref="UniProtKB/TrEMBL:D2TQA3" FT /protein_id="CBG87569.1" FT /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEV FT TNATIAVYNEDNGKHAVELTQRFARAKAFTHVLLLNSPQEIQPTIDTQKALLLVRFPAD FT FSRNLDTFQPAPMQLILDGRNSNSAQIAANYLQQIIKVYQQELMEGKPQPNNSELVVRN FT WYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFVGK FT AVPALIVATFQATIVLGIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCATQ FT QQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLSI FT VWGSLWPLLVIAATTGSAAYAMFRRKVM" FT misc_feature complement(join(870336..870404,870507..870566, FT 870585..870653,870681..870749,870831..870899, FT 871278..871346)) FT /locus_tag="ROD_07921" FT /note="6 probable transmembrane helices predicted for FT ROD07921 by TMHMM2.0 at aa 24-46, 173-195, 223-245, FT 255-277, 284-303 and 338-360" FT misc_feature complement(870417..871073) FT /locus_tag="ROD_07921" FT /note="HMMPfam hit to PF01061, ABC-2 type transporter, FT score 2.1e-42" FT /inference="protein motif:PFAM:PF01061" FT CDS complement(871450..872583) FT /transl_table=11 FT /locus_tag="ROD_07931" FT /product="ABC transporter, permease protein" FT /db_xref="GOA:D2TQA4" FT /db_xref="InterPro:IPR000412" FT /db_xref="UniProtKB/TrEMBL:D2TQA4" FT /protein_id="CBG87570.1" FT /translation="MGNSLLSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGY FT GINLDSSRLRVGILLEQQSKEALDFTHTLTGSPYIDATISDNRHELIEKMQAGRIRGLV FT VIPVDFAEKMARADDTAPIQVIADGSEPNTANFVQGYVEGIWQIWQMQRAEDRGETFEP FT LIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEVT FT RLELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLLLFLITSLFLLSTLGMGLL FT ISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFVSTLQSL FT FLAGNIPVVLLVNVLFLIASAVMFIGLTWMKTKRRLD" FT misc_feature complement(join(871480..871548,871642..871710, FT 871729..871797,871825..871893,871972..872040, FT 872437..872505)) FT /locus_tag="ROD_07931" FT /note="6 probable transmembrane helices predicted for FT ROD07931 by TMHMM2.0 at aa 27-49, 182-204, 231-253, FT 263-285, 292-314 and 346-368" FT misc_feature complement(871558..872100) FT /locus_tag="ROD_07931" FT /note="HMMPfam hit to PF01061, ABC-2 type transporter, FT score 3.9e-25" FT /inference="protein motif:PFAM:PF01061" FT CDS complement(872576..874312) FT /transl_table=11 FT /locus_tag="ROD_07941" FT /product="ABC transporter ATP-binding protein" FT /db_xref="GOA:D2TQA5" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TQA5" FT /protein_id="CBG87571.1" FT /translation="MNDAVITLKGLTKRFAGMDKPAVAPLDCTIHAGYVTGLVGPDGAG FT KTTLMRMLAGLLKADDGSATVIGCDPIKNDSALHAVLGYMPQKFGLYEDLTVMENLNLY FT ADLRSVTGEAREKTFARLLEFTALGPFTERLAGKLSGGMKQKLGLACTLVGEPKVLLLD FT EPGVGVDPISRRELWQMVHELAGDGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGDPT FT QLTKTMAGRSFLMHSPQEGNRKLLQRALKLPQVSDGMIQGRSVRLIVKKEATAEDIRRG FT DGMPEIGINETAPCFEDAFIDLLGGAATSESPLGAILHTVEGTPGETVIEAKALTKKFG FT DFAATDNVNFSVRRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGKALVLDMDLKVSSGK FT ARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKIARMSEAFGLKSIASQAT FT DALPLGFKQRLALACSLMHEPDILFLDEPTSGVDPITRREFWLHINSMVEKGVTVMVTT FT HFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQAADDQTPDPTMEQAFITLIHDWDKEHG FT HG" FT misc_feature complement(872708..873250) FT /locus_tag="ROD_07941" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 1.3e-46" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(873206..873229) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(873674..874216) FT /locus_tag="ROD_07941" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 1.4e-40" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(873854..873898) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(874172..874195) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(874305..875300) FT /transl_table=11 FT /locus_tag="ROD_07951" FT /product="putative membrane protein" FT /db_xref="GOA:D2TQA6" FT /db_xref="InterPro:IPR006143" FT /db_xref="InterPro:IPR022936" FT /db_xref="UniProtKB/TrEMBL:D2TQA6" FT /protein_id="CBG87572.1" FT /translation="MKKPVVIGLAVAALIAVIAGGTWWYQSRQDNGLTLYGNVDIRTVN FT MSFRVGGRLASLTVDEGDAIRAGQILGELDHAPYQNALMQAKAGVSVAKAQYDLMLAGY FT REEEIAQAAASVRQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQALATLKS FT AQDKLNQYRSGNREQDIAQAKASLEQAQAQLAQAELDLQDTTLVAPSSGTLLTRAVEPG FT SMLNAGSTVLTLSLTRPVWVRAYVDERNLNQARPGREILLYTDGRPDKPYHGKIGFVSP FT TAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPVTLRFSDEAGHE" FT misc_feature complement(874530..875177) FT /locus_tag="ROD_07951" FT /note="HMMPfam hit to PF00529, Secretion protein HlyD, FT score 8.9e-18" FT /inference="protein motif:PFAM:PF00529" FT misc_feature complement(875220..875288) FT /locus_tag="ROD_07951" FT /note="1 probable transmembrane helix predicted for FT ROD07951 by TMHMM2.0 at aa 5-27" FT sig_peptide complement(875244..875300) FT /locus_tag="ROD_07951" FT /note="Signal peptide predicted for ROD07951 by SignalP 2.0 FT HMM (Signal peptide probability 0.981) with cleavage site FT probability 0.668 between residues 19 and 20" FT CDS complement(875300..875974) FT /transl_table=11 FT /locus_tag="ROD_07961" FT /product="TetR-family transcriptional regulator" FT /db_xref="GOA:D2TQA7" FT /db_xref="InterPro:IPR001647" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR011075" FT /db_xref="InterPro:IPR015292" FT /db_xref="InterPro:IPR015893" FT /db_xref="InterPro:IPR023772" FT /db_xref="InterPro:IPR023773" FT /db_xref="UniProtKB/TrEMBL:D2TQA7" FT /protein_id="CBG87573.1" FT /translation="MNTPTMTSKGEQAKSQLIAAALAQFGEYGLHATTRDIAAQAGQNI FT AAITYYFGSKEDLYLACAQWIADFIGEQFRPLAEEAELLLAQPTPDRAAIRELIHRACN FT NMIMLLTQDDTVNLSKFISREQLSPTAAYQLVHTQVIDPLHRHLTRLIAAFTGCDADDT FT RTILHSHALLGEVLAFRIGKETILLRTGWSQFDDEKAALIAGTVTCHIDLILQGLSQRS FT LD" FT misc_feature complement(875321..875692) FT /locus_tag="ROD_07961" FT /note="HMMPfam hit to PF09209, Transcriptional regulator, FT YbiH, C-terminal, score 1.3e-40" FT /inference="protein motif:PFAM:PF09209" FT misc_feature complement(875789..875926) FT /locus_tag="ROD_07961" FT /note="HMMPfam hit to PF00440, Transcriptional regulator, FT TetR-like, DNA-binding, bacterial/archaeal, score 1.1e-16" FT /inference="protein motif:PFAM:PF00440" FT misc_feature complement(875801..875890) FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT /inference="protein motif:Prosite:PS01081" FT misc_feature complement(875816..875881) FT /note="Predicted helix-turn-helix motif with score FT 1086.000, SD 2.89 at aa 32-53, sequence FT ATTRDIAAQAGQNIAAITYYFG" FT CDS complement(876046..876969) FT /transl_table=11 FT /locus_tag="ROD_07971" FT /product="putative LysR-family transcriptional regulator" FT /db_xref="GOA:D2TQA8" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TQA8" FT /protein_id="CBG87574.1" FT /translation="MPTPVPNKMLPVPSLRNIQAFIEVADTGSLNTAAENLNITASAVS FT HQIASLENFLGKKLFSRSSKGVKLTTIGERYLKEVSGALNMIGQATNQVIHDIHQDYLR FT IHSAPSFGLLWLMPRLDRFRQAWPELKISLTCSYESIQFSRDNIDIDIRHGLAQWPTLV FT VKTIRNERMLPYTSQAWLESHPLQTPEDLLSCDLIHSDSTLINWNNWFSWHKVRGFNKN FT FIFNFDRSYMSIEAARMGLGVILESNLLAGESLRKQHLRPVFADDVSMSVNAHHLVMPH FT TSEQKAKVKAFIAWISEELDAAGFQI" FT misc_feature complement(876067..876684) FT /locus_tag="ROD_07971" FT /note="HMMPfam hit to PF03466, LysR, substrate-binding, FT score 1.1e-26" FT /inference="protein motif:PFAM:PF03466" FT misc_feature complement(876748..876927) FT /locus_tag="ROD_07971" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 4.5e-20" FT /inference="protein motif:PFAM:PF00126" FT misc_feature complement(876793..876885) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature complement(876823..876888) FT /note="Predicted helix-turn-helix motif with score FT 1315.000, SD 3.67 at aa 28-49, sequence FT GSLNTAAENLNITASAVSHQIA" FT CDS 877290..878618 FT /transl_table=11 FT /locus_tag="ROD_07981" FT /product="Major Facilitator Superfamily transporter" FT /db_xref="GOA:D2TQA9" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TQA9" FT /protein_id="CBG87575.1" FT /translation="MSRIDTVVCTDTRKTKYRFVVLTMIFLVYAINYADRTNIGAVLPF FT IIDEFHINNFEAGAIASMFFLGYAVSQIPAGFFIAKRGTRGLVSLSIFGFSAFTWLMGT FT VSSVFGLKLVRLGLGLSEGPCPVGLASTINSWFPPKEKATATGVYIAATMFAPIIVPPL FT AVWIAVTWGWRWVFFSFAIPGLVAAIAWYVLVKTKPSESRFVSASELEDIHAGHHDHTG FT KRENIVIDDKFRWLDKIIRVRKRAPVDTAKGLFTSKNILGDCLAYFMMVSVLYGLLTWI FT PLYLVKEKGFDFMSMGLVASMPCIGGFVGAIGGGYISDKLLGRRRKPTMIFTAISTVIM FT MLIMLNIPASTAAVCTGLFFVGLCLNIGWPAFTAYGMAVSDARTYPIASSIINSGGNLG FT GFVSPMVAGFLLDNTGSFNSVFTYFGICAAIGLVVILFIDEPQ" FT misc_feature join(877338..877391,877461..877529,877548..877616, FT 877626..877694,877728..877796,877806..877874, FT 878079..878147,878175..878243,878280..878348, FT 878361..878429,878448..878516,878544..878603) FT /locus_tag="ROD_07981" FT /note="12 probable transmembrane helices predicted for FT ROD07981 by TMHMM2.0 at aa 17-34, 58-80, 87-109, 113-135, FT 147-169, 173-195, 264-286, 296-318, 331-353, 358-380, FT 387-409 and 419-438" FT misc_feature 877362..878525 FT /locus_tag="ROD_07981" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 4.6e-68" FT /inference="protein motif:PFAM:PF07690" FT CDS 878669..879418 FT /transl_table=11 FT /locus_tag="ROD_07991" FT /product="putative exported protein" FT /db_xref="GOA:D2TQB0" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR002347" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR020904" FT /db_xref="UniProtKB/TrEMBL:D2TQB0" FT /protein_id="CBG87576.1" FT /translation="MLLKNKVAIVTGAASVRGLGFATAKLFAENGAKVVIIDLNKEASA FT AAAKSLGDEHLGLAANVADEAQVSAAMEQIVAKYGRVDVLVNNAGITQPIKLMDIKREN FT YDAVLDVSLRGTLLMSQAVIPLMRKQKSGSIVCISSVSAQRGGGIFGGPHYSAAKAGVL FT GLARAMARELGPDNVRVNCITPGLIQTDITAGKLTDEMTANILAGIPMNRLGDAVDIAR FT AALFLGSDLSSYSTGITLDVNGGMLIH" FT sig_peptide 878669..878752 FT /locus_tag="ROD_07991" FT /note="Signal peptide predicted for ROD07991 by SignalP 2.0 FT HMM (Signal peptide probability 0.966) with cleavage site FT probability 0.509 between residues 28 and 29" FT misc_feature 878684..879190 FT /locus_tag="ROD_07991" FT /note="HMMPfam hit to PF00106, Short-chain FT dehydrogenase/reductase SDR, score 2.6e-31" FT /inference="protein motif:PFAM:PF00106" FT misc_feature 879092..879178 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT /inference="protein motif:Prosite:PS00061" FT misc_feature 879140..879187 FT /note="PS00038 Myc-type, 'helix-loop-helix' dimerization FT domain signature." FT /inference="protein motif:Prosite:PS00038" FT CDS 879433..880278 FT /transl_table=11 FT /locus_tag="ROD_08001" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR005474" FT /db_xref="UniProtKB/TrEMBL:D2TQB1" FT /protein_id="CBG87577.1" FT /translation="MNMTEVQKVAAAAWRIRRYALRMGEVQGQGYIGQALGYADVLATA FT FSHAMTWRAQDAEWEGRDRFLLSHGHYAIAYYAALLEAGIIPEAELETYGSDDSRLPMS FT GMATYTPGMEMSGGSLGQGLSIAVGIALGLRQKQSPSWVYNSMSDGELDEGSTWEAAMS FT AAHYGLTNLINIVDVNRQQADGDSRKILGFEPLHEKWAAFGWYVQRIDGNDVAAVVNAF FT DNAKNHRGEQPRVIICDTLMGKGVPFLETRDKNHFIRVDADEWQKAIAVLDANKPEGVL FT " FT misc_feature 879454..880263 FT /locus_tag="ROD_08001" FT /note="HMMPfam hit to PF00456, Transketolase, N-terminal, FT score 2.2e-16" FT /inference="protein motif:PFAM:PF00456" FT CDS 880278..881276 FT /transl_table=11 FT /locus_tag="ROD_08011" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TQB2" FT /db_xref="InterPro:IPR005475" FT /db_xref="InterPro:IPR005476" FT /db_xref="InterPro:IPR009014" FT /db_xref="InterPro:IPR015941" FT /db_xref="UniProtKB/TrEMBL:D2TQB2" FT /protein_id="CBG87578.1" FT /translation="MSQTTPKTRLKTSAMIASIADEGQVTVPAPFGVALAKLAAQRPEI FT VGMTADLSKYTDLHIFAQAFPDRFFQMGMAEQLLMGAAGGMAKEGFIPFATTYAVFATR FT RAYDFIHQVIAEEHLNVKICAALPGLTTGYGPSHQATEDLAIMRGIPGMTIIDPCDALE FT IEQAVPAMADHNGPVYMRLLRGKVPLVLDKYDYKFELGKAKLLEDGNDVLIISSGLMTM FT RALETVEKLRADNISAAVLHVPTIKPLDEKTIVEQASKPGRLVITAENHTCIGGLGEAV FT AALLMRKGVRCELDTIGLPDEFLLAGALPTLHERYGISTAMMVEKIKNRLR" FT misc_feature 880344..880847 FT /locus_tag="ROD_08011" FT /note="HMMPfam hit to PF02779, Transketolase, central FT region, score 9.8e-45" FT /inference="protein motif:PFAM:PF02779" FT misc_feature 880878..881243 FT /locus_tag="ROD_08011" FT /note="HMMPfam hit to PF02780, Transketolase, C-terminal, FT score 1.1e-31" FT /inference="protein motif:PFAM:PF02780" FT CDS 881333..883945 FT /transl_table=11 FT /gene="adh" FT /locus_tag="ROD_08021" FT /product="alcohol dehydrogenase" FT /EC_number="1.1.1.1" FT /db_xref="GOA:D2TQB3" FT /db_xref="InterPro:IPR001670" FT /db_xref="InterPro:IPR012079" FT /db_xref="InterPro:IPR015590" FT /db_xref="InterPro:IPR016161" FT /db_xref="InterPro:IPR016162" FT /db_xref="InterPro:IPR016163" FT /db_xref="InterPro:IPR018211" FT /db_xref="UniProtKB/TrEMBL:D2TQB3" FT /protein_id="CBG87579.1" FT /translation="MSINSIEELNALVARVKKAQREYASFSQEQVDKIFRAAALAAADA FT RIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPI FT GIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAP FT KDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVID FT ETADIKRAVASVLMSKTFDNGVICASEQSVIVVDAIYDAVKARFAKSGAVILNKKEKRA FT TGDILLKNGALNAAIVGQPAYKIAELAGFSVPENTKILIGEVTVVDDSEPFAHEKLSPT FT LAMYRAKDFEDAVSKAEKLVAMGGIGHTSCLYTDQDNQPERVAYFGQMMKTARILINTP FT ASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPK FT SIYFRRGSLPVALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVE FT ADPTLSVVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDI FT RKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVD FT ANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKENLPASYNEGA FT KNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLISNVIRYNA FT NDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESLKAELGIP FT KSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLVSELRQLLLASYYGKEFSEG" FT misc_feature 881339..882574 FT /gene="adh" FT /locus_tag="ROD_08021" FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase, FT score 9.5e-08" FT /inference="protein motif:PFAM:PF00171" FT misc_feature 882701..883894 FT /gene="adh" FT /locus_tag="ROD_08021" FT /note="HMMPfam hit to PF00465, Iron-containing alcohol FT dehydrogenase, score 1.3e-237" FT /inference="protein motif:PFAM:PF00465" FT misc_feature 883226..883312 FT /note="PS00913 Iron-containing alcohol dehydrogenases FT signature 1." FT /inference="protein motif:Prosite:PS00913" FT misc_feature 883490..883552 FT /note="PS00060 Iron-containing alcohol dehydrogenases FT signature 2." FT /inference="protein motif:Prosite:PS00060" FT CDS 884147..885502 FT /transl_table=11 FT /gene="rhlE" FT /locus_tag="ROD_08031" FT /product="putative ATP-dependent RNA helicase" FT /EC_number="3.6.1.-" FT /db_xref="GOA:D2TQB4" FT /db_xref="InterPro:IPR000629" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR014014" FT /db_xref="UniProtKB/TrEMBL:D2TQB4" FT /protein_id="CBG87580.1" FT /translation="MSFDSLGLNPEILRAIAEQGYREPTPVQQQAIPAVLEGRDLMASA FT QTGTGKTAGFTLPLLQHLITQQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNI FT RSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLD FT MGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKRLAEKLLHNPLEIEVARRNTASEQVTQ FT HVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ FT GARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAA FT ATGEALSLVCVDEHKLLRDIEKLLKKEIPRMTTPGYEPDPSIKAEPIQNGRQQRSGGGG FT RGQGQGQGAGRGQQSRRQDGGAPKAKPRSGEGKPAGDKPRPPRRPRRITPAQ" FT misc_feature 884219..884737 FT /gene="rhlE" FT /locus_tag="ROD_08031" FT /note="HMMPfam hit to PF00270, DNA/RNA helicase, DEAD/DEAH FT box type, N-terminal, score 3.8e-74" FT /inference="protein motif:PFAM:PF00270" FT misc_feature 884279..884302 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 884606..884632 FT /note="PS00039 DEAD-box subfamily ATP-dependent helicases FT signature." FT /inference="protein motif:Prosite:PS00039" FT misc_feature 884936..885166 FT /gene="rhlE" FT /locus_tag="ROD_08031" FT /note="HMMPfam hit to PF00271, DNA/RNA helicase, FT C-terminal, score 4.9e-34" FT /inference="protein motif:PFAM:PF00271" FT CDS 885693..887846 FT /transl_table=11 FT /gene="dinG" FT /locus_tag="ROD_08041" FT /product="probable ATP-dependent helicase" FT /db_xref="GOA:D2TQB5" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR006555" FT /db_xref="InterPro:IPR010614" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR014013" FT /db_xref="UniProtKB/TrEMBL:D2TQB5" FT /protein_id="CBG87581.1" FT /translation="MALTAALKAQIAAWYKALQEPIPDFIPRAPQRQMIADVAKTLSGE FT EGRHLAIEAPTGVGKTLSYLIPGIAIAREDQKTLVVSTANVALQDQIYSKDLPLLRKII FT PDLRFTAAFGRGRYVCPRNLAALASSEPSQQDLLAFLDDELTPNSQEEQKRCATLKASL FT DSYRWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCHYYRECPFFVARREIQEAEVVVA FT NHALVMAALESEAVLPEPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTK FT LVATCMEQFRPKTTPPLANPERLNAHCEELYELIASLNNILNLYMPAAQEAEHRFAMGE FT LPDEVMEICQRLAKLTETLRGLAELFLNDLSEKTGSHDVVRLHRVILQMNRAQGMFEAQ FT SKLWRLASLAQSSGAPVTKWATREVRDGQIHVWFHCVGIRVSDQLERLLWRSVPHIIVT FT SATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHVEQGKIVIPQMRYEPLIDNEEQH FT IAEMAAYFREQVESKKHLGMLVLFASGRAMQRFLDYVADLRLLLLVQGDQPRYRLVELH FT RKRVAGGERSVLIGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNR FT YPFEVQSLPAASFNLIQQVGRLIRSHQCWGEIVIYDKRLLTKSYGKRLLNALPIFPIEQ FT PAVPEVIVKAKEKAKPTRRRRRS" FT misc_feature 885852..885875 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 887873..888841 FT /transl_table=11 FT /locus_tag="ROD_08051" FT /product="putative glycosyl transferase" FT /db_xref="GOA:D2TQB6" FT /db_xref="InterPro:IPR000312" FT /db_xref="InterPro:IPR017459" FT /db_xref="InterPro:IPR020072" FT /db_xref="UniProtKB/TrEMBL:D2TQB6" FT /protein_id="CBG87582.1" FT /translation="MDYRKIIKEIGRGKNHARDLDQDTARGLYSQMLSGEVPELEMGGI FT LIALRIKGEGEAEMRGFYEAMRNHTITLTPPAAKPMPVVIPSYNGARKQANLTPLLAIL FT LHKLGFPVVVHGVSEDPTRVLTETIFELMGIEPVRHAGQAQAKLDNHQPLFIPVGTLCP FT PLETQLAMRWRLGVRNSAHTLAKLATPFAEDAALRLSSVSHPEYVPRVATFFSEIGGRA FT LLMHGTEGEVYASPQRCPQISLIDSAGVRVLQERQSETPDQPVPLPAAKDAPTTAHWIE FT RCLAGSEPVPTSLKLQMACCLVATAEVETLVEGLARVNATF" FT misc_feature 887876..888085 FT /locus_tag="ROD_08051" FT /note="HMMPfam hit to PF02885, Glycosyl transferase, family FT 3, score 7e-26" FT /inference="protein motif:PFAM:PF02885" FT CDS complement(888951..889211) FT /transl_table=11 FT /locus_tag="ROD_08061" FT /product="putative exported protein" FT /db_xref="InterPro:IPR010854" FT /db_xref="UniProtKB/TrEMBL:D2TQB7" FT /protein_id="CBG87583.1" FT /translation="MKNIKYAVAAVALSALSFGAFAAEPVTATQAQTMNKMGVVSADGA FT TTLDGLEAQLAEKAAAAGASGYSITSATNNNKMSGTAVIYK" FT misc_feature complement(888954..889211) FT /locus_tag="ROD_08061" FT /note="HMMPfam hit to PF07338, Protein of unknown function FT DUF1471, score 1.6e-35" FT /inference="protein motif:PFAM:PF07338" FT misc_feature complement(889125..889193) FT /locus_tag="ROD_08061" FT /note="1 probable transmembrane helix predicted for FT ROD08061 by TMHMM2.0 at aa 7-29" FT sig_peptide complement(889146..889211) FT /locus_tag="ROD_08061" FT /note="Signal peptide predicted for ROD08061 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT CDS complement(889498..889770) FT /transl_table=11 FT /locus_tag="ROD_08071" FT /product="putative zinc ion binding protein" FT /db_xref="GOA:D2TQB8" FT /db_xref="InterPro:IPR000962" FT /db_xref="InterPro:IPR012783" FT /db_xref="InterPro:IPR020460" FT /db_xref="UniProtKB/TrEMBL:D2TQB8" FT /protein_id="CBG87584.1" FT /translation="MHMASGWANDDAVNEQINSTIEDAVARARGEIPRGDSLYECAECG FT EPIPEARRKAVPGVRLCLACQQEKDAHSSGHAGYNRRGSKDSQLR" FT misc_feature complement(889552..889764) FT /locus_tag="ROD_08071" FT /note="HMMPfam hit to PF01258, Zinc finger, DksA/TraR FT C4-type, score 3.5e-31" FT /inference="protein motif:PFAM:PF01258" FT CDS 889932..890942 FT /transl_table=11 FT /locus_tag="ROD_08081" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TQB9" FT /db_xref="InterPro:IPR010286" FT /db_xref="InterPro:IPR016909" FT /db_xref="UniProtKB/TrEMBL:D2TQB9" FT /protein_id="CBG87585.1" FT /translation="MSASPQKPGLHPRNRHHSRYDLPALCKGTPELSQYLIRTPAGEQS FT VDFASPQAVRALNKALLAHFYGVANWDIPDGFLCPPVPGRADYIHHLADLLAETAGSVP FT TNASILDIGVGANCIYPLIGVHEYGWRFTGSETNEQALASAQAIISANPGLTRAIRLRR FT QKTPAAIFNGIIHKNEQYDATLCNPPFHDSAASARAGSERKRRNLGQDKDEALNFGGQQ FT QELWCEGGEVAFIKTMIAESRAFGRQVMWFTTLVSRGENLPPLYRALTDIGAVKVVKKE FT MAQGQKQSRFIAWTFMDDDKRRHFQARKRYSVGSAGGCGAGAEGIVAESVGAGRS" FT misc_feature 889941..890825 FT /locus_tag="ROD_08081" FT /note="HMMPfam hit to PF05971, Protein of unknown function FT DUF890, score 1.7e-210" FT /inference="protein motif:PFAM:PF05971" FT CDS complement(890861..893101) FT /transl_table=11 FT /locus_tag="ROD_08091" FT /product="putative exported protein" FT /db_xref="GOA:D2TQC0" FT /db_xref="InterPro:IPR006685" FT /db_xref="InterPro:IPR010920" FT /db_xref="InterPro:IPR011014" FT /db_xref="InterPro:IPR011066" FT /db_xref="UniProtKB/TrEMBL:D2TQC0" FT /protein_id="CBG87586.1" FT /translation="MRWILFILVCLAGAPAHAVEIPGVTASPATEAKTTPAAEPDAEQK FT KAAYAALADVLENETSRKELIDQLRSVAAAPPSQPAVKIVPPAVVEEKTVLENVTDVSR FT RYGAAFAERFAQLYRNITDAPHKPFNSTTFTNALTHFLMLAAAVFGFYWLIRLCALPLY FT RKMGNWARKKNRERRNWLQLPAMIVGAFIIDLLLLALTLFLGQLLSDRLNADSRTIAFQ FT QGLFLNAFALIEFFKAILRLIFCPNVPELRPFTIQDANAHYWSRRLSSLSSLIGYGLIV FT AVPIISNQVNVQVGAMANVIIMLGITVWALYLIFHNKKDITQHLLNLAEHSLAFFSLFI FT RAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVHSLAIIGIAAFVSGMFSRWIA FT KTITLSPHTQRNYPELQKRLNGWLSTALKVARFLTVCVAIMLLLNAWGLFDFWNWLHNG FT AGEKTVDILIRIALILFFSAVGWTILASLIENRLASDIHGRPLPSARTRTLLTLFRNAL FT AVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNT FT GDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDR FT QEDADKANQALKDAVAAVMQNEEIRGLIIGEPNFAGIVGLTNNAFTLRVTFTTLPLKQW FT TVRFALDSQVKKHFDLAGVRAPVQMYQLLPAPTLSATIPSAPAPQPPAEPTL" FT misc_feature complement(890954..891562) FT /locus_tag="ROD_08091" FT /note="HMMPfam hit to PF00924, MscS Mechanosensitive ion FT channel, score 4.5e-61" FT /inference="protein motif:PFAM:PF00924" FT misc_feature complement(join(891509..891577,891638..891706, FT 891749..891817,891920..891988,892031..892099, FT 892160..892228,892241..892300,892382..892450, FT 892493..892561,892622..892690)) FT /locus_tag="ROD_08091" FT /note="10 probable transmembrane helices predicted for FT ROD08091 by TMHMM2.0 at aa 138-160, 181-203, 218-240, FT 268-287, 292-314, 335-357, 372-394, 429-451, 466-488 and FT 509-531" FT misc_feature complement(891941..891973) FT /note="PS00639 Eukaryotic thiol (cysteine) proteases FT histidine active site." FT /inference="protein motif:Prosite:PS00639" FT sig_peptide complement(893048..893101) FT /locus_tag="ROD_08091" FT /note="Signal peptide predicted for ROD08091 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 18 and 19" FT CDS complement(893218..893940) FT /transl_table=11 FT /gene="glnQ" FT /locus_tag="ROD_08101" FT /product="glutamine ABC transporter, ATP-binding protein" FT /db_xref="GOA:D2TQC1" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TQC1" FT /protein_id="CBG87587.1" FT /translation="MIEFKNVSKHFGPTQVLHNIDLKINQGEVVVIIGPSGSGKSTLLR FT CINKLEEITAGELIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR FT VRGTNKQEAEKQAKALLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLFDEP FT TSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRVAEDGNPQA FT LIENPPSQRLQEFLQHVS" FT misc_feature complement(893305..893862) FT /gene="glnQ" FT /locus_tag="ROD_08101" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 1.4e-69" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(893488..893532) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(893818..893841) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(893937..894596) FT /transl_table=11 FT /gene="glnP" FT /locus_tag="ROD_08111" FT /product="glutamine ABC transporter, permease protein" FT /db_xref="GOA:D2TQC2" FT /db_xref="InterPro:IPR000515" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:D2TQC2" FT /protein_id="CBG87588.1" FT /translation="MQFDWSAIWPAIPILLQGAKMTLWISILGLAGGIVIGLLAGLART FT YGGWIANHVALVFIEIIRGTPIVVQVMYIYFALPMAFPDLRIDTFSAAVITIMINSGAY FT IAEITRGSVLSIHKGFSEAGLALGLSRRETIRHVIMPLALRRMLPSLGNQLIISIKDTS FT LFIVIGAAELTRSGQEIIAGNFRALEIWTAVGVVYLIITQVLNIVLRSLERRMKIL" FT misc_feature complement(893943..894554) FT /gene="glnP" FT /locus_tag="ROD_08111" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.5e-35" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(join(893970..894038,894369..894437, FT 894471..894539)) FT /gene="glnP" FT /locus_tag="ROD_08111" FT /note="3 probable transmembrane helices predicted for FT ROD08111 by TMHMM2.0 at aa 20-42, 54-76 and 187-209" FT misc_feature complement(894174..894260) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT CDS complement(894707..895453) FT /transl_table=11 FT /gene="glnH" FT /locus_tag="ROD_08121" FT /product="glutamine ABC transporter, substrate-binding FT protein" FT /db_xref="GOA:D2TQC3" FT /db_xref="InterPro:IPR001638" FT /db_xref="InterPro:IPR018313" FT /db_xref="UniProtKB/TrEMBL:D2TQC3" FT /protein_id="CBG87589.1" FT /translation="MKSVLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGDK FT YVGFDIDLWAAVAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFS FT DGYYKSGLLVMVKANNNDIKSVKDLDGKTLAVKSGTGSVDYAKANIKTKDLRQFPNIDN FT AYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGESLEAQQYGIAFPKGSDDLREKV FT NGALKTLRDNGTYNEIYKKWFGTEPK" FT misc_feature complement(894719..895375) FT /gene="glnH" FT /locus_tag="ROD_08121" FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding protein, family 3, score 1.1e-92" FT /inference="protein motif:PFAM:PF00497" FT misc_feature complement(895271..895312) FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT /inference="protein motif:Prosite:PS01039" FT sig_peptide complement(895388..895453) FT /gene="glnH" FT /locus_tag="ROD_08121" FT /note="Signal peptide predicted for ROD08121 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT repeat_region complement(895777..895786) FT /note="10 bp direct repeat flanking ISCro3" FT repeat_region complement(895787..897216) FT /note="Insertion sequence ISCro3. 1 of 11 intact ISCro3 FT elements in CR chromosome, all have 18 bp inverted repeats FT containing 2 bp mismatches, and are flanked by direct FT repeats of varying length. This element has 10 bp direct FT repeats" FT repeat_region 895787..895804 FT /note="18 bp terminal inverted repeat of ISCro3, contains 2 FT mismatches" FT CDS complement(895796..897133) FT /transl_table=11 FT /locus_tag="ROD_08131" FT /product="ISCro3 transposase" FT /db_xref="GOA:D2TQC4" FT /db_xref="InterPro:IPR002559" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR014736" FT /db_xref="InterPro:IPR024473" FT /db_xref="UniProtKB/TrEMBL:D2TQC4" FT /protein_id="CBG87590.1" FT /translation="MPLLNDLLDFSDHPLMPPPSAQLFAQHLPVEWIQHCLTLSAHATV FT RRRRLPGDMVIWMVVAMAFFRNESITDVVRRLNLSADGEAGMNLLARSAVTQARQRVGA FT APVEWLFRQTAQTWGTERYQKDDWHGLQLFAIDGAQFRTPDEPELREHYGSANTSTERQ FT SAYPVMRLVALMNLGSHILLDAATAPYRRSETLLAHSMLVTIPDNSITLFDKLFYSADL FT LLSLNRQGCNRHCLLPAWKNIAAETEESYGPGDRLLKLKVSPQARKKNPSLPEYWYARA FT VTYELNGVEKTVLTSLQADRYKAREVAELYHSRWEIEVGFRNLKSSLLNNALVLRSRKV FT ELLEQEVWGMLLAYNLIRREATKATEKHKKAASEISFKFAFQFIATEMIVLGNTVSPGT FT IPKRLEHLRGALEAVFITKRPRPSRPRAVKISKTRYPVKRNAAPLK" FT misc_feature complement(896066..896737) FT /locus_tag="ROD_08131" FT /note="HMMPfam hit to PF01609, Transposase, IS4-like, score FT 3.8e-27" FT /inference="protein motif:PFAM:PF01609" FT repeat_region complement(897199..897216) FT /note="18 bp terminal inverted repeat of ISCro3, contains 2 FT mismatches" FT repeat_region complement(897217..897226) FT /note="10 bp direct repeat flanking ISCro3" FT CDS complement(897258..897761) FT /transl_table=11 FT /gene="dps" FT /locus_tag="ROD_08141" FT /product="DNA protection during starvation protein" FT /EC_number="1.16.-.-" FT /db_xref="GOA:D2TQC5" FT /db_xref="InterPro:IPR002177" FT /db_xref="InterPro:IPR008331" FT /db_xref="InterPro:IPR009078" FT /db_xref="InterPro:IPR012347" FT /db_xref="InterPro:IPR023067" FT /db_xref="InterPro:IPR023188" FT /db_xref="UniProtKB/TrEMBL:D2TQC5" FT /protein_id="CBG87591.1" FT /translation="MSTAKLVKTKASNLLYTRNDVSDSDKKATVELLNRQVIQFIDLSL FT ITKQAHWNMRGANFIAVHEMLDGFRTALTDHLDTMAERAVQLGGVALGTTQVINSKTPL FT KSYPLDIHSVQDHLKELADRYAVVANDVRKAIGEAKDEDTADIFTAASRDLDKFLWFIE FT SNIE" FT misc_feature complement(897270..897686) FT /gene="dps" FT /locus_tag="ROD_08141" FT /note="HMMPfam hit to PF00210, Ferritin and Dps, score FT 8.7e-13" FT /inference="protein motif:PFAM:PF00210" FT misc_feature complement(897489..897533) FT /note="PS00819 Dps protein family signature 2." FT /inference="protein motif:Prosite:PS00819" FT misc_feature complement(897561..897611) FT /note="PS00818 Dps protein family signature 1." FT /inference="protein motif:Prosite:PS00818" FT CDS complement(898072..898959) FT /transl_table=11 FT /locus_tag="ROD_08151" FT /product="putative exported protein" FT /db_xref="GOA:D2TQC6" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:D2TQC6" FT /protein_id="CBG87592.1" FT /translation="MPGSSRKIPVWLPILVLLIAMCSIQSGASLAKSLFPLVGAPGVTA FT LRLALGTLILVIFFKPWRLRFAREQRLPLLFYGLSLGGMNYLFYLSIQTVPLGIAVALE FT FTGPLAVALFASRRPIDFIWVVLAVLGLWFLLPLGQDVSHVDLAGAAMALGAGACWAIY FT ILCGQRAGAEHGPATVAVGSLIAAIIFVPLGAAQAGEALWHWSVIPLGLAVAVLSTALP FT YSLEMIALTRLPTRTFGTLMSMEPALAAVAGILFLGETLTFIQLLALGAIIAASMGSTL FT TLRRDSQIKKLDVN" FT misc_feature complement(join(898111..898179,898189..898248, FT 898285..898353,898366..898425,898462..898530, FT 898543..898596,898615..898683,898693..898746, FT 898783..898851,898867..898935)) FT /locus_tag="ROD_08151" FT /note="10 probable transmembrane helices predicted for FT ROD08151 by TMHMM2.0 at aa 9-31, 37-59, 72-89, 93-115, FT 122-139, 144-166, 179-198, 203-225, 238-257 and 261-283" FT misc_feature complement(898117..898488) FT /locus_tag="ROD_08151" FT /note="HMMPfam hit to PF00892, Protein of unknown function FT DUF6, transmembrane, score 1.2e-21" FT /inference="protein motif:PFAM:PF00892" FT misc_feature complement(898483..898515) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT sig_peptide complement(898867..898959) FT /locus_tag="ROD_08151" FT /note="Signal peptide predicted for ROD08151 by SignalP 2.0 FT HMM (Signal peptide probability 0.998) with cleavage site FT probability 0.943 between residues 31 and 32" FT CDS 899364..899879 FT /transl_table=11 FT /gene="ompX" FT /locus_tag="ROD_08161" FT /product="outer membrane protein X" FT /db_xref="GOA:D2TQC7" FT /db_xref="InterPro:IPR000758" FT /db_xref="InterPro:IPR011250" FT /db_xref="InterPro:IPR017690" FT /db_xref="UniProtKB/TrEMBL:D2TQC7" FT /protein_id="CBG87593.1" FT /translation="MKKIACLSALAAVLAFTAGSATAATSTVSGGYAQSDAQGVANKMN FT GFNLKYRYEQDNNPLGVIGSFTYTEKDRTNGAGDYNKSQYYGLTAGPAFRLNDWASIYG FT VVGVGYGKFQQTNYPGYKDDTSDYGFSYGAGLQFNPIENVALDFSYEQSRIRNVDVGTW FT IAGVGYRF" FT misc_feature 899364..899876 FT /gene="ompX" FT /locus_tag="ROD_08161" FT /note="HMMPfam hit to PF06316, Virulence-related outer FT membrane protein, score 3.1e-18" FT /inference="protein motif:PFAM:PF06316" FT sig_peptide 899364..899432 FT /gene="ompX" FT /locus_tag="ROD_08161" FT /note="Signal peptide predicted for ROD08161 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.998 between residues 23 and 24" FT misc_feature 899382..899450 FT /gene="ompX" FT /locus_tag="ROD_08161" FT /note="1 probable transmembrane helix predicted for FT ROD08161 by TMHMM2.0 at aa 7-29" FT misc_feature 899499..899525 FT /note="PS00694 Enterobacterial virulence outer membrane FT protein signature 1." FT /inference="protein motif:Prosite:PS00694" FT misc_feature 899850..899876 FT /note="PS00695 Enterobacterial virulence outer membrane FT protein signature 2." FT /inference="protein motif:Prosite:PS00695" FT CDS complement(899951..901531) FT /transl_table=11 FT /locus_tag="ROD_08171" FT /product="putative membrane protein" FT /db_xref="GOA:D2TQC8" FT /db_xref="InterPro:IPR000917" FT /db_xref="InterPro:IPR017849" FT /db_xref="InterPro:IPR017850" FT /db_xref="UniProtKB/TrEMBL:D2TQC8" FT /protein_id="CBG87594.1" FT /translation="MNLTLKESLIARSRAISPWTGFYFLQSLLINLALGYPFSLLYTAA FT FTCLLLLLWRTAPRAQKVLTGLCSLTAALYFPFGQAYGAPNFNTLLALHSTNMEESTEI FT LTIFPWYSYLVGLFIFALGIIAVRRRQEAVKPRWNRYDSLCLLFSVAAFFVAPIQNLAW FT GGVFKLQDTGYPVFRFAKDIIVNNNEVIDEQARMAMLAGMKDTWTVTAVKPKYHTYVVV FT IGESARRDALGAFGGHWDNTPFASSVNGYLFMDYVAASGSTQKSLDLTLNRVVEGKPQY FT QDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIARRADEVQFLKSGDFEADKNTEDSA FT LLKLTAQVLASERSQPQLIVLHLMGSHPQACDRTHGKYETFVQSKETSCYLYTMTQTDD FT LLRQLYDQLRNSGDSFSLVYFSDHGLAFKERGKEVQYLAHDDRFQQNFQVPFMVLSSDD FT KAHKLINARRSANDFLSFFSQWTGIRAKEIKNRYRFISGQKTGPVYITNFKLQQVDYNH FT LGTDIFSTK" FT misc_feature complement(899987..900889) FT /locus_tag="ROD_08171" FT /note="HMMPfam hit to PF00884, Sulphatase, score 1.1e-70" FT /inference="protein motif:PFAM:PF00884" FT misc_feature complement(join(901034..901102,901151..901219, FT 901277..901345,901370..901438)) FT /locus_tag="ROD_08171" FT /note="4 probable transmembrane helices predicted for FT ROD08171 by TMHMM2.0 at aa 32-54, 63-85, 105-127 and FT 144-166" FT CDS 901669..901902 FT /transl_table=11 FT /locus_tag="ROD_08181" FT /product="putative membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TQC9" FT /protein_id="CBG87595.1" FT /translation="MIRSTGSNNLFCEEVSKSDKKKGYSGAQRPVSGKNDRRMKRRPAT FT PCYFSAGLSCSGLLLIISHSIESSINLTLKGE" FT misc_feature 901798..901866 FT /locus_tag="ROD_08181" FT /note="1 probable transmembrane helix predicted for FT ROD08181 by TMHMM2.0 at aa 44-66" FT misc_feature 901801..901833 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 902123..902596 FT /transl_table=11 FT /gene="mntR" FT /locus_tag="ROD_08191" FT /product="transcriptional regulator (manganese transport FT regulator)" FT /db_xref="GOA:D2TQD0" FT /db_xref="InterPro:IPR001367" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR022687" FT /db_xref="InterPro:IPR022689" FT /db_xref="UniProtKB/TrEMBL:D2TQD0" FT /protein_id="CBG87596.1" FT /translation="MSRRAGTPTTKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELI FT SDLIREVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIEMIPWRGVFLTPEGEKLAQE FT SRERHQIVENFLLVLGVSAEIARRDAEGMEHHVSQETLDAFRAFTQQHGTLSE" FT misc_feature 902219..902401 FT /gene="mntR" FT /locus_tag="ROD_08191" FT /note="HMMPfam hit to PF01325, Iron dependent repressor, FT score 3e-07" FT /inference="protein motif:PFAM:PF01325" FT misc_feature 902285..902350 FT /note="Predicted helix-turn-helix motif with score FT 1524.000, SD 4.38 at aa 55-76, sequence FT ARQVDMAARLGVSQPTVAKMLK" FT misc_feature 902405..902581 FT /gene="mntR" FT /locus_tag="ROD_08191" FT /note="HMMPfam hit to PF02742, Iron dependent repressor, FT score 3.8e-08" FT /inference="protein motif:PFAM:PF02742" FT CDS 902593..903702 FT /transl_table=11 FT /locus_tag="ROD_08201" FT /product="putative exported protein" FT /db_xref="GOA:D2TQD1" FT /db_xref="InterPro:IPR004680" FT /db_xref="UniProtKB/TrEMBL:D2TQD1" FT /protein_id="CBG87597.1" FT /translation="MSLPFFRALKRDRFFHLLLIVGAGLSLFVPFRPQSWPAAIDWHTI FT ITLSGLMLLTKGVELSGYFDVLGRKMVRRFASERRLAMFMVLAAALLSTFLTNDVALFI FT VVPLTITLKKLCAIPVNRLIIFEALAVNAGSLLTPIGNPQNILLWGRSGLSFAAFIAQM FT APLAAAMMLTLLIMCWLCFPAKPLVYHTGTRAPQWQPRLVWSCLGLYIVFLTALELKQE FT LAGLAIVTLGFLLLARRVVLNVDWTLLLVFMAMFIDVHLLIQLPALQGALNQVGGLTQP FT ELWLTAIGLSQFISNVPGTILLLNYVPPTMLLAWAVNVGGFGLLPGSLANLIALRMAND FT RRIWWRFHLYSLPMLIWVGVVGYGLLRVL" FT misc_feature 902593..903555 FT /locus_tag="ROD_08201" FT /note="HMMPfam hit to PF03600, Divalent ion symporter, FT score 5.8e-07" FT /inference="protein motif:PFAM:PF03600" FT sig_peptide 902593..902697 FT /locus_tag="ROD_08201" FT /note="Signal peptide predicted for ROD08201 by SignalP 2.0 FT HMM (Signal peptide probability 0.836) with cleavage site FT probability 0.836 between residues 35 and 36" FT misc_feature join(902629..902688,902716..902784,902842..902910, FT 903070..903138,903196..903249,903259..903318, FT 903337..903396,903439..903507,903526..903594, FT 903622..903690) FT /locus_tag="ROD_08201" FT /note="10 probable transmembrane helices predicted for FT ROD08201 by TMHMM2.0 at aa 13-32, 42-64, 84-106, 160-182, FT 202-219, 223-242, 249-268, 283-305, 312-334 and 344-366" FT CDS complement(903780..904700) FT /transl_table=11 FT /locus_tag="ROD_08211" FT /product="putative exported protein" FT /db_xref="GOA:D2TQD2" FT /db_xref="InterPro:IPR005490" FT /db_xref="UniProtKB/TrEMBL:D2TQD2" FT /protein_id="CBG87598.1" FT /translation="MNMKLTTFFAAALAVVGFCSSASAVTYPLPTDGSRLIGQNQVITI FT PEGNTQPLEYFAAEYQMGLSNMLEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIIIN FT SAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRA FT AGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLF FT ENVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEEQFEGGEIVPITLTKTVKSVT FT DQADVDQAVVEQAIQSRSGMPVRLN" FT misc_feature complement(904002..904415) FT /locus_tag="ROD_08211" FT /note="HMMPfam hit to PF03734, ErfK/YbiS/YcfS/YnhG, score FT 9.2e-68" FT /inference="protein motif:PFAM:PF03734" FT misc_feature complement(904614..904682) FT /locus_tag="ROD_08211" FT /note="1 probable transmembrane helix predicted for FT ROD08211 by TMHMM2.0 at aa 7-29" FT sig_peptide complement(904629..904700) FT /locus_tag="ROD_08211" FT /note="Signal peptide predicted for ROD08211 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.982 between residues 24 and 25" FT CDS 904926..906518 FT /transl_table=11 FT /locus_tag="ROD_08221" FT /product="ABC transporter ATP-binding protein" FT /db_xref="GOA:D2TQD3" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:D2TQD3" FT /protein_id="CBG87599.1" FT /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMK FT ILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEAFSVLDTVIMGHSELWEVKQERDRIYS FT LPEMSEEDGYKVADLEVKYGEMDGYSAESRAGELLLGVGIPVEQHYGPMSEVAPGWKLR FT VLLAQALFSNPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHM FT ADLDYGELRVYPGNYDEYMTAATQARERLLADNARKKAQIAELQSFVSRFSANASKSRQ FT ATSRARQIDKIKLDEVKASSRQNPFIRFEQDKKLFRNALEVEALSKGFDNGPLFKGVNL FT LLEVGEKLAVLGTNGVGKSTFLKTLVGDLQADNGSVKWSENARIGYYAQDHEYEFENDL FT TVFDWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPN FT ILVMDEPTNHLDMESIESLNMALEMYQGTLIFVSHDREFVSSLATRVLEITPQRVIDFT FT GNYEDYLRSKGIE" FT misc_feature 905004..905609 FT /locus_tag="ROD_08221" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 4.1e-40" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 905025..905048 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 905958..906458 FT /locus_tag="ROD_08221" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 1.9e-44" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 905979..906002 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 906754..907608 FT /transl_table=11 FT /locus_tag="ROD_08231" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR024267" FT /db_xref="UniProtKB/TrEMBL:D2TQD4" FT /protein_id="CBG87600.1" FT /translation="MHQPGTTSLASLKAQLLNLNANNQYPFILREEGDEIIASWNIVDA FT RWREILGKAGLKKQYELRLFFDESKKQVRYHEKSTDVEWSASPGGLKFSKSARLGKQLE FT FSTGSAWGAKDDGSVGKIYGYKFVSTEITDPVFEIVRNAGWQVQGILADKKKRRLAIAG FT VIGAALIIIVGIASILFVSLGGVKNAARAEIELLRNGQYSEAWRASAYAIQRKMTEEEF FT IQATKFLNFPEIEDYSFNNISVKNNVGTLSGKVTFKNGAPGRITVTMYKENEQWKLAGV FT SVD" FT misc_feature 907228..907296 FT /locus_tag="ROD_08231" FT /note="1 probable transmembrane helix predicted for FT ROD08231 by TMHMM2.0 at aa 159-181" FT CDS complement(907664..908926) FT /transl_table=11 FT /locus_tag="ROD_08241" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR010856" FT /db_xref="UniProtKB/TrEMBL:D2TQD5" FT /protein_id="CBG87601.1" FT /translation="MVFTFTSETLPADHKAAIRQMKRELRAQLGDVQAVFDRISETIAA FT RVAEINALKAQGEAVWPELSYADIRAGRITAQQREEIKRRGCAVIKGHFPRQQALDWDR FT SMLDYLDRNHFDAVYKGPGDNFFGTLTASRPEIYPIYWSQAQMQARQSEEMANVQSFLN FT RLWTFESEGRQWFNPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQRVFA FT NVFNGNLTKYDPWNAAHRNEVEEYSVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPI FT PEAMAYILLRPLLDYVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPQLEAGDSVWWH FT CDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYARKVKAALETGASPGDFPREDYEAN FT WEGRFTMADLNIHGRRALGME" FT misc_feature complement(907667..908923) FT /locus_tag="ROD_08241" FT /note="HMMPfam hit to PF07350, Protein of unknown function FT DUF1479, score 0" FT /inference="protein motif:PFAM:PF07350" FT CDS 909241..911178 FT /transl_table=11 FT /locus_tag="ROD_08251" FT /product="putative membrane protein" FT /db_xref="GOA:D2TQD6" FT /db_xref="InterPro:IPR001915" FT /db_xref="UniProtKB/TrEMBL:D2TQD6" FT /protein_id="CBG87602.1" FT /translation="MMEQKKIWRLFIIPVSLVCYALWLCGRVANTFYDAAFSAVTRGYL FT SVLALGLAGGALILTGAAVTICVTSARASRQSQEALVQRFSLCRRLLPVFMVAQIVLCG FT LSVISLALAEGLWLVFAVGGEAIIKFVMILLFFIGVIVWMLVKSLASIRKCFALFEPED FT MTISGITVSEAKAPQLWQWVRELNQEGRLIVPDNIVAGFFDCFYVTANPVQISAGERLT FT GNTLYLPLTYMALLERNEIAAVLGHELAHFSGADTQYSLRFLPLYAGMQNSLESMACNS FT QGYSWLDYLVLRPALEMGMWFLSQFHESVIHWERIREYAADADGANVSSPAALASGLLR FT MTVLEPVINRHLEDIFYGRVVSENWIASLITTVQPLGRFARPDSINNEMPHPMDSHPTT FT LQRINALNVPLDDELWARALRPVAQEYTAFFEALFVDAAEVCSFLSRDISAETAPRREA FT YRQELETKAAEGKASVVFWTSRKTAWFCAPVSLLLLAGGSYLLIAESFSAWFWLLPVLG FT VIVGMASVVTVQRSRRPMFTLNEDFLTSPWVSQSLPLKQVVDYSLLSINSSTTIKLALD FT EAFQPQMTTKWFMQPVRYNPRRHEVVIIISGALYREQEGRKVKLEIEQVAELIGQYLVA FT AHARAELTQF" FT misc_feature join(909259..909327,909370..909438,909511..909579, FT 909607..909675,910687..910746,910756..910824) FT /locus_tag="ROD_08251" FT /note="6 probable transmembrane helices predicted for FT ROD08251 by TMHMM2.0 at aa 7-29, 44-66, 91-113, 123-145, FT 483-502 and 506-528" FT misc_feature 909742..910473 FT /locus_tag="ROD_08251" FT /note="HMMPfam hit to PF01435, Peptidase M48, Ste24p, score FT 0.0015" FT /inference="protein motif:PFAM:PF01435" FT misc_feature 909970..909999 FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT /inference="protein motif:Prosite:PS00142" FT CDS complement(911221..912036) FT /transl_table=11 FT /locus_tag="ROD_08261" FT /product="putative hydrolase" FT /db_xref="GOA:D2TQD7" FT /db_xref="InterPro:IPR000150" FT /db_xref="InterPro:IPR006379" FT /db_xref="InterPro:IPR013200" FT /db_xref="InterPro:IPR023214" FT /db_xref="UniProtKB/TrEMBL:D2TQD7" FT /protein_id="CBG87603.1" FT /translation="MTVNVIVTDMDGTFLDDAKKYDRTRFMAQYQELKKRNIEFVVASG FT NQYYQLISFFPELKDEISFVAENGALVFEHGKQLFHGELTRHESQVVIGELLKDKQLNF FT VACGLKSAYVSESAPAEFVALMAKHYHRLQPVKNYHDIDDVLFKISLNLPDEQIPLVME FT ALLRSLDGIMKPVTSGFGFIDLIIPGLHKANGITRLLKRWDLSPKNVVAIGDSGNDAEM FT LKMAGYSFAMANAADAIKAIARFRTDDNNHQGALNVIQAVLDNRSPFNL" FT misc_feature complement(911260..912021) FT /locus_tag="ROD_08261" FT /note="HMMPfam hit to PF08282, HAD superfamily FT hydrolase-like, type 3, score 7e-70" FT /inference="protein motif:PFAM:PF08282" FT misc_feature complement(911332..911400) FT /note="PS01229 Hypothetical cof family signature 2." FT /inference="protein motif:Prosite:PS01229" FT CDS complement(912164..914596) FT /transl_table=11 FT /gene="pflF" FT /locus_tag="ROD_08271" FT /product="putative formate acetyltransferase 3 (pyruvate FT formate lyase 3)" FT /EC_number="2.3.1.54" FT /db_xref="GOA:D2TQD8" FT /db_xref="InterPro:IPR001150" FT /db_xref="InterPro:IPR004184" FT /db_xref="InterPro:IPR010098" FT /db_xref="InterPro:IPR019777" FT /db_xref="UniProtKB/TrEMBL:D2TQD8" FT /protein_id="CBG87604.1" FT /translation="MTQLKLDTLSERIKAHKTALVHIVKPPVCTERAQHYTRMYKQHLD FT KPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDSLAD FT RPGAGFAVSEENKRVLHEICPWWRGQTVQDRCYGMFTDEQKALLETGIIKAEGNMTSGD FT AHLAVNFPLLLTKGLDGLREKVAERRSRINLTVLDDLHGEQFLKAIDIVLAAVSDHITR FT FAGLARKMAGEESRESRRDELLAIAENCDLIAHQPPQTFWQALQLCYFIQLILQIESNG FT HSVSFGRMDQYLYPYYRRDVELDQSLDREHAIELLHSCWLKLLEVNKIRSGSHSKASAG FT SPLYQNVTIGGQNLVNGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDA FT CVQVIRCGFGMPAFNNDEIVIAEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMS FT FINFARVMLAALEGGRDATSGKVFLPQEKALSAGNFSSFDEVLEAWDTQIRYYTRKSIE FT IEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAV FT KKLVFEQGVIGQQQLAAALAADFDGLTHEQLRQRLINGAPKYGNDDDSVDTLLARAYQT FT YIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAATMATPDGRKAHTPLAEGASPA FT SGTDHLGPTAVIGSVGKLPTGSILGGVLLNQKLNPATLENASDKQKLMILLRTFFEDHK FT GWHIQYNIVSRETLLAAKKHPDQYRDLVVRVAGYSAFFTALSPDAQDDIIARTEHML" FT misc_feature complement(912221..912538) FT /gene="pflF" FT /locus_tag="ROD_08271" FT /note="HMMPfam hit to PF01228, Formate C-acetyltransferase FT glycine radical, score 2.3e-19" FT /inference="protein motif:PFAM:PF01228" FT misc_feature complement(912230..912256) FT /note="PS00850 Glycine radical signature." FT /inference="protein motif:Prosite:PS00850" FT misc_feature complement(912584..914572) FT /gene="pflF" FT /locus_tag="ROD_08271" FT /note="HMMPfam hit to PF02901, Pyruvate formate-lyase, PFL, FT score 0" FT /inference="protein motif:PFAM:PF02901" FT CDS complement(914601..915500) FT /transl_table=11 FT /gene="pflE" FT /locus_tag="ROD_08281" FT /product="putative pyruvate formate-lyase 3-activating FT enzyme" FT /EC_number="1.97.1.4" FT /db_xref="GOA:D2TQD9" FT /db_xref="InterPro:IPR001989" FT /db_xref="InterPro:IPR007197" FT /db_xref="InterPro:IPR012839" FT /db_xref="UniProtKB/TrEMBL:D2TQD9" FT /protein_id="CBG87605.1" FT /translation="MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDIL FT FDARLCLEGCELCAQAAPDVIERALNGLLIHREKLTESHFSALADCCPTQALTVCGEVR FT NVDEIMSTVLRDKPFYDRSGGGITLSGGEPFMQPELAAALFKASHEAGIHTAVETCLHV FT PWKYIAPSLPYIDLFLADLKHVADAPFRQWTDGSAARVLGNLKKVAAAGKQMIIRVPLI FT QGFNADEEAIRAITDFAADELRVAEIHFLPYHTLGINKYHLLNQPYHAPEKPLDAPELL FT AFAQQYACAKGLTATLRG" FT misc_feature complement(914796..915446) FT /gene="pflE" FT /locus_tag="ROD_08281" FT /note="HMMPfam hit to PF04055, Radical SAM, score 1.1e-10" FT /inference="protein motif:PFAM:PF04055" FT misc_feature complement(915399..915464) FT /note="PS01087 Radical activating enzymes signature." FT /inference="protein motif:Prosite:PS01087" FT CDS 915634..916296 FT /transl_table=11 FT /gene="fsaA" FT /locus_tag="ROD_08291" FT /product="fructose-6-phosphate aldolase" FT /EC_number="4.1.2.-" FT /db_xref="GOA:D2TQE0" FT /db_xref="InterPro:IPR001585" FT /db_xref="InterPro:IPR004731" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR018225" FT /db_xref="InterPro:IPR023001" FT /db_xref="UniProtKB/TrEMBL:D2TQE0" FT /protein_id="CBG87606.1" FT /translation="MELYLDTSDVQAVKALARIFPLAGVTTNPSIVAAGKKPLEVLLPE FT LREAMGGQGRLFAQVMATTAEGMVSDARKLRGIIPDIVVKVPVTAEGLAAIKLLKVEGI FT PTLGTAVYGAAQGLLGALAGAEYIAPYVNRVDAQGGDGIQTVTDLQKLLKMHAPQAKVL FT AASFKTPRQALDCLLTGCEAITLPLDVAQQMIAYPAVDAAVARFEHDWQSAFGHTAI" FT misc_feature 915637..916287 FT /gene="fsaA" FT /locus_tag="ROD_08291" FT /note="HMMPfam hit to PF00923, Transaldolase, score FT 1.7e-94" FT /inference="protein motif:PFAM:PF00923" FT misc_feature 915703..915729 FT /note="PS01054 Transaldolase signature 1." FT /inference="protein motif:Prosite:PS01054" FT misc_feature 915877..915930 FT /note="PS00958 Transaldolase active site." FT /inference="protein motif:Prosite:PS00958" FT CDS 916498..917442 FT /transl_table=11 FT /locus_tag="ROD_08301" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR006842" FT /db_xref="InterPro:IPR010106" FT /db_xref="UniProtKB/TrEMBL:D2TQE1" FT /protein_id="CBG87607.1" FT /translation="MTTSTPHDAIFKTFLTHPETAHDFLSLHLPSGLRKLCDLHTLKLE FT STSFIEERLQAYYSDVLWSLKTTEGDGYIYVVIEHQSRPDAHMAFRLMRYAIAAMQNHL FT DAGHKTLPLVVPMLFYHGAVSPYPFSLCWLDEFANPLMARQLYSAAFPLVDITVVPDDE FT IMQHRRMALLEFIQKHIRQRNLMGLVDKLASLIVSGSANDSQLKALFNYLLIQHGHKPR FT FGQFVRAIANQVPEHKESFMNIVEKIRRAGQRKGKREGMQLGLEQGLQEGLQKGRREEA FT LRIARAMLENGVEREFIVQMTGLSQDEIALLRH" FT misc_feature 916498..917373 FT /locus_tag="ROD_08301" FT /note="HMMPfam hit to PF04754, Transposase (putative), FT YhgA-like, score 1.1e-191" FT /inference="protein motif:PFAM:PF04754" FT CDS complement(917485..918234) FT /transl_table=11 FT /gene="moeB" FT /locus_tag="ROD_08311" FT /product="molybdopterin biosynthesis protein" FT /db_xref="GOA:D2TQE2" FT /db_xref="InterPro:IPR000594" FT /db_xref="InterPro:IPR007901" FT /db_xref="InterPro:IPR009036" FT /db_xref="InterPro:IPR012730" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TQE2" FT /protein_id="CBG87608.1" FT /translation="MAELSDQEMLRYNRQIILRGFDFDGQEALKAAKVLIVGLGGLGCA FT ASQYLASAGVGQLTLLDFDTVSLSNLQRQTLHSDTTVGQAKVDSARDALRRINPYIAIT FT PVNALLDDAALAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQISV FT FTYQEGEPCYRCLSRLFGDNALTCVEAGVMAPLIGVIGSLQAMEAIKLLAQYGQPARGK FT IVIYDAMTCQFREMKLMRNPNCEVCGE" FT misc_feature complement(917488..917733) FT /gene="moeB" FT /locus_tag="ROD_08311" FT /note="HMMPfam hit to PF05237, MoeZ/MoeB, score 5.8e-34" FT /inference="protein motif:PFAM:PF05237" FT misc_feature complement(917743..918147) FT /gene="moeB" FT /locus_tag="ROD_08311" FT /note="HMMPfam hit to PF00899, UBA/THIF-type NAD/FAD FT binding fold, score 3.6e-60" FT /inference="protein motif:PFAM:PF00899" FT misc_feature complement(918103..918135) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(918234..919469) FT /transl_table=11 FT /gene="moeA" FT /locus_tag="ROD_08321" FT /product="molybdopterin biosynthesis protein" FT /db_xref="GOA:D2TQE3" FT /db_xref="InterPro:IPR001453" FT /db_xref="InterPro:IPR005110" FT /db_xref="InterPro:IPR005111" FT /db_xref="InterPro:IPR008284" FT /db_xref="InterPro:IPR020817" FT /db_xref="UniProtKB/TrEMBL:D2TQE3" FT /protein_id="CBG87609.1" FT /translation="MEFTTGLMPLETALTDMLSRVTPLTAVETLPLTQCFGRILAHDVV FT SPLDVPGFDNSAMDGYAVRLADLASGQPLPVAGKAFAGQPFQGEWPVGSCIRIMTGAPV FT PAGCEAVVMQEQTETSGSGVRFTAEVKAGQNIRRRGEDITQNAVVFAAGTRLTTAELPV FT LASLGIAQAPVVRKVRVALFSTGDELQLPGQPLGEGQIYDTNRLTVHLMLQQLGCEVIN FT LGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPG FT KPFAFGKLSNSWFCGLPGNPVSAALTFYQLVQPLLAKLSGNRASGLPPRQRVRTASRLK FT KTPGRLDFQRGVLQRTADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEAGEWV FT EVEPFNALFGGL" FT misc_feature complement(918255..918476) FT /gene="moeA" FT /locus_tag="ROD_08321" FT /note="HMMPfam hit to PF03454, MoeA, C-terminal, domain IV, FT score 1.6e-26" FT /inference="protein motif:PFAM:PF03454" FT misc_feature complement(918516..918929) FT /gene="moeA" FT /locus_tag="ROD_08321" FT /note="HMMPfam hit to PF00994, Molybdopterin binding, score FT 4e-52" FT /inference="protein motif:PFAM:PF00994" FT misc_feature complement(918609..918710) FT /note="PS01079 Molybdenum cofactor biosynthesis proteins FT signature 2." FT /inference="protein motif:Prosite:PS01079" FT misc_feature complement(918966..919451) FT /gene="moeA" FT /locus_tag="ROD_08321" FT /note="HMMPfam hit to PF03453, MoeA, N-terminal, domain I FT and II, score 9.9e-82" FT /inference="protein motif:PFAM:PF03453" FT CDS 919654..920619 FT /transl_table=11 FT /gene="iaaA" FT /locus_tag="ROD_08331" FT /product="putative L-asparaginase" FT /EC_number="3.5.1.1" FT /db_xref="GOA:D2TQE4" FT /db_xref="InterPro:IPR000246" FT /db_xref="UniProtKB/TrEMBL:D2TQE4" FT /protein_id="CBG87610.1" FT /translation="MGKAVIAIHGGAGAIARAQMSQQQALRYSQALSDIVGVGQKMLEA FT GESALDVVTEAVRLLEECPLFNAGIGAVYTRDGTHELDACVMDGNTLKAGAVAGVNQLR FT NPVLAARLVMERSPHVMMIGPGAEQFAFDQGMERVSPEIFSTPERYAQLLAARASGETV FT LDHSGAPLDERKKMGTVGAVALDLQGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANN FT ASVAVSCTGTGEVFIRALAAYDIAALMEYGGLSLSEACERVVMEKLPALGGSGGLIAVD FT HEGNVALPFNSEGMYRAWGYAGDTPTTGIYREQGDAVATQ" FT misc_feature 919657..920604 FT /gene="iaaA" FT /locus_tag="ROD_08331" FT /note="HMMPfam hit to PF01112, Peptidase T2, asparaginase FT 2, score 1.2e-174" FT /inference="protein motif:PFAM:PF01112" FT misc_feature 920308..920340 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 920639..922477 FT /transl_table=11 FT /locus_tag="ROD_08341" FT /product="ABC transporter, ATP-binding protein" FT /db_xref="GOA:D2TQE5" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR013563" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TQE5" FT /protein_id="CBG87611.1" FT /translation="MLTVSNLNIAFHQDRLRFPAVRNLSFRLKRGETLAIVGESGSGKS FT VTALALMRLIEQSGGEVQSERMLLRRRNRQVIELGEQSASQLQRIRGADMAMIFQEPMT FT SLNPVFTVGEQIAESVRLHQGLGREEAMAQARRMLEQVRIPEAKMVLSRYPHQLSGGMR FT QRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLINVLQQEMSMGVIFITHDMGVVA FT DVADRVLVMYQGEAVETGDVQQIFRAPQHPYTRALLAAVPKLGAMKGLPYPRRFPLISL FT NEPEKREPQTDQNTVVEGEPILQVRNLVTRFPLRSGILNRVTREVHAVENVSFDLWPGE FT TLSLVGESGCGKSTTGRALLRLVDTQAGEIIFQGQRIDNLPARQLQSLRRDIQFIFQDP FT YASLDPRQTVGYSIMEPLRVHGLLNGDAAAKRVAWLLERVGLLPEHAWRYPHEFSGGQR FT QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDLGIAYLFISHDMAVVE FT RISHRVAVMNRGRIVEMGPRAALFENPQHPYTRKLMAAVPVADPGRPRPQRVLLSDELP FT GNIYRRGEAVAPVSLQQVGPGHYVAPAQQENALSRL" FT misc_feature 920729..921340 FT /locus_tag="ROD_08341" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 3.2e-61" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 920750..920773 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 921110..921154 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature 921347..921520 FT /locus_tag="ROD_08341" FT /note="HMMPfam hit to PF08352, Oligopeptide/dipeptide ABC FT transporter, C-terminal, score 1.5e-06" FT /inference="protein motif:PFAM:PF08352" FT misc_feature 921653..922225 FT /locus_tag="ROD_08341" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 6.5e-64" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 921674..921697 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 921995..922039 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature 922232..922408 FT /locus_tag="ROD_08341" FT /note="HMMPfam hit to PF08352, Oligopeptide/dipeptide ABC FT transporter, C-terminal, score 1.1e-07" FT /inference="protein motif:PFAM:PF08352" FT CDS 922458..924044 FT /transl_table=11 FT /locus_tag="ROD_08351" FT /product="ABC transporter, substrate-binding protein" FT /db_xref="GOA:D2TQE6" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:D2TQE6" FT /protein_id="CBG87612.1" FT /translation="MRCRAYNIQAGYRRKKMIKFVPRHGLLAFGAACALAASPAFAAKD FT VVVAVGSSFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGLVY FT TLKLRQGVKFQDGSDFNAEAVKANLDRASNPDNHLKRYNLYKNIAKTEAVDPATVKITL FT KQPFSAFINILAHPATAMISPTALKKYGKEIGFHPVGTGPYQLETWNQTDFVKVKKFAG FT YWQQGLPKLDSITWRPVADNNTRAAMLQTGEAQFAFPIPYEQASLLAKNKNLALVTSPS FT IMQRYISMNVTQKPFDNPKVREALNYAINRQALVKVAFAGYATPAAGVVPPSIAWAQTY FT KPWPYDPAKARELLKEAGYPDGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAM FT DAGQRAAEVEGKGQKESGVRMFYTGWSASTGEADWALAPLFASQNWPPTLFNTAFYSNK FT QVDDDLAQALKTTDPQEKARLYKAAQDTIWKESPWIPLVVEKLVSAHSKKLTGFWIMPD FT TGFSFDDADLQ" FT sig_peptide 922458..922583 FT /locus_tag="ROD_08351" FT /note="Signal peptide predicted for ROD08351 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 42 and 43" FT misc_feature 922515..922583 FT /locus_tag="ROD_08351" FT /note="1 probable transmembrane helix predicted for FT ROD08351 by TMHMM2.0 at aa 20-42" FT misc_feature 922713..923798 FT /locus_tag="ROD_08351" FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding protein, family 5, score 8.8e-95" FT /inference="protein motif:PFAM:PF00496" FT CDS 924062..924982 FT /transl_table=11 FT /locus_tag="ROD_08361" FT /product="ABC transporter, permease protein" FT /db_xref="GOA:D2TQE7" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TQE7" FT /protein_id="CBG87613.1" FT /translation="MLNYILKRLLGLIPTLFIVAVLVFLFVHLLPGDPARLIAGPEADA FT QVIELVRQQLGLDRPLLVQFWHYITSVLQGDFGMSMVSRRPVSEEIASRFMPTLWLTLS FT SMLWAVLFGMAAGIIAAVWRNRWPDRLSMTIAVTGISFPAFALGMLLMQVFSVQLGWLP FT TVGADSWQHYILPSLTLGAAVASVMARFTRASFVDVLGEDYMRTARAKGVSETWVVLKH FT GLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLF FT SLEFILINLVVDVLYAAINPAIRYK" FT sig_peptide 924062..924148 FT /locus_tag="ROD_08361" FT /note="Signal peptide predicted for ROD08361 by SignalP 2.0 FT HMM (Signal peptide probability 0.611) with cleavage site FT probability 0.416 between residues 29 and 30" FT misc_feature join(924086..924154,924362..924430,924464..924532, FT 924575..924628,924740..924808,924893..924961) FT /locus_tag="ROD_08361" FT /note="6 probable transmembrane helices predicted for FT ROD08361 by TMHMM2.0 at aa 9-31, 101-123, 135-157, 172-189, FT 227-249 and 278-300" FT misc_feature 924344..924976 FT /locus_tag="ROD_08361" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.9e-58" FT /inference="protein motif:PFAM:PF00528" FT misc_feature 924650..924736 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT CDS 924985..925896 FT /transl_table=11 FT /locus_tag="ROD_08371" FT /product="ABC transporter, permease protein" FT /db_xref="GOA:D2TQE8" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TQE8" FT /protein_id="CBG87614.1" FT /translation="MRLLNWRRQAILNAMPLVKPGRVRTPWYEFWRRFRRQHAALIAGI FT FVLALIIVAIFARWLAPFDAENYFDYDRLNEGPSAQHWFGVDSLGRDIFSRVLVGAQIS FT LAAGVFAVLIGAAIGTLLGLLAGYYEGWWDRLIMRVCDVLFAFPGILLAIAVVAVLGSG FT IANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDAAIIFNHILPGTVSSI FT VVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVMAPHVALFPAVAIFL FT TVLAFNLLGDGLRDALDPKIKG" FT sig_peptide 924985..925155 FT /locus_tag="ROD_08371" FT /note="Signal peptide predicted for ROD08371 by SignalP 2.0 FT HMM (Signal peptide probability 0.638) with cleavage site FT probability 0.553 between residues 57 and 58" FT misc_feature join(925099..925167,925303..925371,925390..925458, FT 925471..925539,925609..925677,925780..925848) FT /locus_tag="ROD_08371" FT /note="6 probable transmembrane helices predicted for FT ROD08371 by TMHMM2.0 at aa 39-61, 107-129, 136-158, FT 163-185, 209-231 and 266-288" FT misc_feature 925285..925893 FT /locus_tag="ROD_08371" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.3e-47" FT /inference="protein motif:PFAM:PF00528" FT misc_feature 925546..925632 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT CDS complement(925984..927318) FT /transl_table=11 FT /locus_tag="ROD_08381" FT /product="radical SAM superfamily protein" FT /db_xref="GOA:D2TQE9" FT /db_xref="InterPro:IPR002792" FT /db_xref="InterPro:IPR005839" FT /db_xref="InterPro:IPR005840" FT /db_xref="InterPro:IPR006638" FT /db_xref="InterPro:IPR007197" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR013848" FT /db_xref="InterPro:IPR020612" FT /db_xref="InterPro:IPR022967" FT /db_xref="InterPro:IPR023404" FT /db_xref="InterPro:IPR023970" FT /db_xref="UniProtKB/TrEMBL:D2TQE9" FT /protein_id="CBG87615.1" FT /translation="MSQTRTLTHQPKIGFVSLGCPKNLVDSERILTELRTEGYNVVPSY FT DDADMVIVNTCGFIDSAVQESLEAIGEALSENGKVIVTGCLGAKEDQIREVHPKVLEIT FT GPHSYEQVLEHVHHYVPKPQHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP FT SMRGDLVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFYNGEPVKTSM FT VSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRP FT GSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYS FT PVEGAGANELPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAI FT GRSMADAPEIDGAVYLNGETRVKPGDVIRVKVENADEYDLWGSRV" FT misc_feature complement(926341..926880) FT /locus_tag="ROD_08381" FT /note="HMMPfam hit to PF04055, Radical SAM, score 8.3e-29" FT /inference="protein motif:PFAM:PF04055" FT misc_feature complement(926818..926880) FT /note="PS01278 Uncharacterized protein family UPF0004 FT signature." FT /inference="protein motif:Prosite:PS01278" FT misc_feature complement(927004..927285) FT /locus_tag="ROD_08381" FT /note="HMMPfam hit to PF00919, Protein of unknown function FT UPF0004, N-terminal, score 3.3e-42" FT /inference="protein motif:PFAM:PF00919" FT CDS 927585..927968 FT /transl_table=11 FT /gene="bssR" FT /locus_tag="ROD_08391" FT /product="biofilm regulator" FT /db_xref="InterPro:IPR020359" FT /db_xref="UniProtKB/TrEMBL:D2TQF0" FT /protein_id="CBG87616.1" FT /translation="MFVDRLRTDLLNRLIDARIDLAAYLQLRKAKGYMSVSENDHLREN FT FFELNRELHDDSLRLNLHLDQEEWEALHRAEGALAAAAVCLMSGHHDCPTFIAVNADKL FT DACLTTLTLSIQSLQAHSSLEHA" FT CDS 928076..929191 FT /transl_table=11 FT /gene="yliI" FT /locus_tag="ROD_08401" FT /product="soluble aldose sugar dehydrogenase" FT /EC_number="1.1.5.-" FT /db_xref="GOA:D2TQF1" FT /db_xref="InterPro:IPR011041" FT /db_xref="InterPro:IPR011042" FT /db_xref="InterPro:IPR012938" FT /db_xref="UniProtKB/TrEMBL:D2TQF1" FT /protein_id="CBG87617.1" FT /translation="MRRVLIPLVPLLLASPLVQAETAAVNVEVLQTKLDHPWALAFLPD FT DNGMLITLKGGQLRHWQVGRGLSDPLSGVPKVWANGQGGLLDVALAPDFAQSRRVWLSF FT AEADAEGKAGTAVGYGRLSDDLSRLENFRTVFRQTPKLSTGNHFGGRLVFDGKGYLFIG FT LGENNQRPTAQALDKLQGKVVRLTDEGKIPPDNPFVNRDGARPEIWSYGIRNPQGMAMN FT PWSDVLWLNEHGPRGGDEINIPAKGKNYGWPLATWGINYSGLKIPEAKGGEVEGTEQPI FT FYWQKSPAVSGMAFYHASTFPQWQQKLFIGALKDKDVIVMNVNGDTVSEEGRILGERGQ FT RIRDVRVGPDGYLYVLTDESDGELLKVSPRR" FT sig_peptide 928076..928135 FT /gene="yliI" FT /locus_tag="ROD_08401" FT /note="Signal peptide predicted for ROD08401 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.993 between residues 20 and 21" FT misc_feature 928757..929080 FT /gene="yliI" FT /locus_tag="ROD_08401" FT /note="HMMPfam hit to PF07995, Glucose sorbosone FT dehydrogenase, score 1.5e-67" FT /inference="protein motif:PFAM:PF07995" FT CDS complement(929188..930474) FT /transl_table=11 FT /locus_tag="ROD_08411" FT /product="putative extracellular sugar-binding protein" FT /db_xref="GOA:D2TQF2" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:D2TQF2" FT /protein_id="CBG87618.1" FT /translation="MKKSLLFLLLCCGLSATTSAWSADPVEIRFSWWGGKVRNQATLKA FT LEAFEAKYPNIKVKAEYTGWDGYYSRFTTQMNSGTEADVLQTNWNWLTLLSKNGDGFYD FT LKKVSGPIGLNQFSPAALATTTVNGKINAIPVSSNVMLFYYNAATWKKAGVAFPNTWEE FT LLKSGPIFKEKLGENYYPLILSEQDALLLVRSYMYQKYQKPMVDEKQRKIAWSHAEWVE FT ALTFYKQLTTQHVIPDAKKLAAYGKGVLYEMKPWINGEWGGIYNWNVLYPAESQNLARP FT SDLVMGPYPMHAGAKDAGQFNKTALMFSISKHSKHPQESAMLIDFLMSQPEGVLATGLE FT RGVPLSAAGEKILREAGILKDDDPVVTGLQQSASLPNHSVIMPWLEDPQIIALFTAARE FT KIDHGKATIDEAASEFEQQANRVLRRIMR" FT misc_feature complement(929473..930462) FT /locus_tag="ROD_08411" FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein, family 1, score 8.4e-18" FT /inference="protein motif:PFAM:PF01547" FT sig_peptide complement(930409..930474) FT /locus_tag="ROD_08411" FT /note="Signal peptide predicted for ROD08411 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.987 between residues 22 and 23" FT CDS complement(930497..931588) FT /transl_table=11 FT /locus_tag="ROD_08421" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TQF3" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR017853" FT /db_xref="InterPro:IPR024778" FT /db_xref="UniProtKB/TrEMBL:D2TQF3" FT /protein_id="CBG87619.1" FT /translation="MQQQWTIPQAQAWYEHHGWACGFNYLPRTAVNWTEMWQADTFDLA FT VIEEELGWAESYGYNALRTNLPFVVWLHDRDGLLQRIDAFLDVAARHRIQVMLTLLDDC FT GFSGDEPWYGPQKAPRPGVHNSQAAASPGRKIVLDPARWPQVEEYVRDIITCFADDRRI FT AIWDLYNEPGNRGVFVSPTEYAEVDGELEEYALRLLRCVFSWARSVFPSQPLTVAAWHV FT DHEVWGTLEHPIDVAAIELSDIVSYHAYVPAAKQARLLHDLSRFARPVLCTEWLSRHTH FT SIFSEQLPLFCAFDSGCYHWGLVQGKTQTWLPWPGVNKTHPEPQSLWFHDVLKADGTPW FT CDDEMRLVKHLTDYRLLRGHKRT" FT CDS 931732..932742 FT /transl_table=11 FT /locus_tag="ROD_08431" FT /product="putative LacI-family transcriptional regulator" FT /db_xref="GOA:D2TQF4" FT /db_xref="InterPro:IPR000843" FT /db_xref="InterPro:IPR001761" FT /db_xref="InterPro:IPR010982" FT /db_xref="UniProtKB/TrEMBL:D2TQF4" FT /protein_id="CBG87620.1" FT /translation="MQKKNKITMSDIAREAGVSQATVSLVLNNSRTIRLSDATRERVFQ FT AAQQLGYQKMIVAHRLEGQEEIALLVSGMPGYDPFVDALSEASSTAWHHDMLLSVYDYS FT DDIELARLILQQLAQRHCAGVIFASPVTRIFDFSALENAVRMPVVLLNQYDPTRPLLPT FT FLPDDKANASQVTRHLLDQGVTRIAHIMGDEWMDASRMRLEGYQETLLAAGIAPDERLI FT RQTDWSLNATYRATQELMQLSEPPEAIFCASDWMTLGCYQALAAAGVRIPQDVLVCGYD FT DQRISHQLTPQLTSIQLAYNELGKMAVEYLCQGDDNATHCKLVGKLQARGSSQRA" FT misc_feature 931750..931827 FT /locus_tag="ROD_08431" FT /note="HMMPfam hit to PF00356, Bacterial regulatory FT protein, LacI, score 3.2e-11" FT /inference="protein motif:PFAM:PF00356" FT misc_feature 931750..931815 FT /note="Predicted helix-turn-helix motif with score FT 2032.000, SD 6.11 at aa 7-28, sequence FT ITMSDIAREAGVSQATVSLVLN" FT misc_feature 931756..931812 FT /note="PS00356 Bacterial regulatory proteins, lacI family FT signature." FT /inference="protein motif:Prosite:PS00356" FT misc_feature 932071..932670 FT /locus_tag="ROD_08431" FT /note="HMMPfam hit to PF00532, Periplasmic binding FT protein/LacI transcriptional regulator, score 4.8e-16" FT /inference="protein motif:PFAM:PF00532" FT CDS complement(932789..933415) FT /transl_table=11 FT /locus_tag="ROD_08441" FT /product="putative glutathione S-transferase" FT /db_xref="GOA:D2TQF5" FT /db_xref="InterPro:IPR004045" FT /db_xref="InterPro:IPR004046" FT /db_xref="InterPro:IPR010987" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR017933" FT /db_xref="UniProtKB/TrEMBL:D2TQF5" FT /protein_id="CBG87621.1" FT /translation="MITLWGRNNSTNVKKVLWTLEELELPFKHILAGGQYGGNQDADYL FT AMNPNGLVPLLRDDENNLVLWESNAIVRFLAAQYGQKRLWIESPARRAEGEKWMDWANQ FT TLSPAHRVILLGLVRTPPEQRDQAAIDAGARRCDELFAILDAELANQPWFSGKEFGTAD FT IAIAPFIYNLFNVGLSWTPRPHLTRWYQQLTERPAFRKIVMIPVS" FT misc_feature complement(932825..933112) FT /locus_tag="ROD_08441" FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal, score 7e-14" FT /inference="protein motif:PFAM:PF00043" FT misc_feature complement(933185..933412) FT /locus_tag="ROD_08441" FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal, score 2.6e-10" FT /inference="protein motif:PFAM:PF02798" FT CDS 933662..934864 FT /transl_table=11 FT /gene="dacC" FT /locus_tag="ROD_08451" FT /product="penicillin-binding protein 6 (D-alanyl-D-alanine FT carboxypeptidase)" FT /EC_number="3.4.16.4" FT /db_xref="GOA:D2TQF6" FT /db_xref="InterPro:IPR001967" FT /db_xref="InterPro:IPR012338" FT /db_xref="InterPro:IPR012907" FT /db_xref="InterPro:IPR015956" FT /db_xref="InterPro:IPR018044" FT /db_xref="UniProtKB/TrEMBL:D2TQF6" FT /protein_id="CBG87622.1" FT /translation="MTHFSTSLRNIAAGSALLFLFAPAVMAAEQTIAAPAVEARAWILM FT DYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTIGKDAWATGNPA FT LRGSSVMFLKPGDRVAVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLG FT LTNTTFRTVHGLDAPGQYSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNR FT LLWSSNINVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWG FT FRFYETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASFTLSEPQ FT LTAPLKKGQVVGTIDFQLNGKSIEQRPLMVMENVEEGGFFSRMWDFVMLKFHQWFGGWF FT S" FT sig_peptide 933662..933742 FT /gene="dacC" FT /locus_tag="ROD_08451" FT /note="Signal peptide predicted for ROD08451 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 27 and 28" FT misc_feature 933743..934459 FT /gene="dacC" FT /locus_tag="ROD_08451" FT /note="HMMPfam hit to PF00768, Peptidase S11, FT D-alanyl-D-alanine carboxypeptidase A, score 4.5e-151" FT /inference="protein motif:PFAM:PF00768" FT misc_feature 934514..934789 FT /gene="dacC" FT /locus_tag="ROD_08451" FT /note="HMMPfam hit to PF07943, Peptidase S11, D-Ala-D-Ala FT carboxypeptidase A, C-terminal, score 2.3e-38" FT /inference="protein motif:PFAM:PF07943" FT CDS complement(934909..935667) FT /transl_table=11 FT /gene="deoR" FT /locus_tag="ROD_08461" FT /product="deoxyribose operon repressor" FT /db_xref="GOA:D2TQF7" FT /db_xref="InterPro:IPR001034" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR014036" FT /db_xref="InterPro:IPR018356" FT /db_xref="UniProtKB/TrEMBL:D2TQF7" FT /protein_id="CBG87623.1" FT /translation="METRRDERIGQLLQALKRSDKLHLKEAAALLGVSEMTIRRDLNSH FT SAPVVLLGGYIVLEPRGASHYLLSDQKSRLVEEKRRAAQLAATLVQPHQTLFFDCGTTT FT PWIIEAIDNDMPFTAVCYSLNTFLALQEKPLCRAILSGGEFHASNAIFKPLDTQETLSH FT ICPDIAFYSAAGIHLSKGATCFNLEELPVKHWAMARAQYHALVADHSKFGKVRPARMGD FT LTRFDAVISDRCPDDEFVDFAKAQDIKLMY" FT misc_feature complement(934972..935442) FT /gene="deoR" FT /locus_tag="ROD_08461" FT /note="HMMPfam hit to PF00455, Bacterial regulatory FT protein, DeoR, score 1.4e-70" FT /inference="protein motif:PFAM:PF00455" FT misc_feature complement(935485..935646) FT /gene="deoR" FT /locus_tag="ROD_08461" FT /note="HMMPfam hit to PF08220, Bacterial regulatory FT protein, DeoR N-terminal, score 9.9e-20" FT /inference="protein motif:PFAM:PF08220" FT misc_feature complement(935539..935604) FT /note="Predicted helix-turn-helix motif with score FT 2038.000, SD 6.13 at aa 22-43, sequence FT LHLKEAAALLGVSEMTIRRDLN" FT misc_feature complement(935542..935646) FT /note="PS00894 Bacterial regulatory proteins, deoR family FT signature." FT /inference="protein motif:Prosite:PS00894" FT CDS complement(935739..936347) FT /transl_table=11 FT /locus_tag="ROD_08471" FT /product="putative phosphatase" FT /db_xref="GOA:D2TQF8" FT /db_xref="InterPro:IPR000326" FT /db_xref="InterPro:IPR016118" FT /db_xref="UniProtKB/TrEMBL:D2TQF8" FT /protein_id="CBG87624.1" FT /translation="MLENINFSLFALLNATPDSASWMISLAIFIARDMIFIVPTLAVAL FT WLWGPRDRLCAQRQLIVKMAIALVVSLLVSWLMGHLFPHQRPFAAGVGYNYLPHAADDS FT YPSDHGTVIFTFALAFLCWYRLWSGLILLALALIIAWSRVYLGVHWPLDMLGGLLAAMI FT GCLSAQMFWQKLGAPLYRGLQSAYRICFALPIRKGWVRD" FT misc_feature complement(935817..936170) FT /locus_tag="ROD_08471" FT /note="HMMPfam hit to PF01569, Phosphatidic acid FT phosphatase type 2-like, score 6.4e-29" FT /inference="protein motif:PFAM:PF01569" FT misc_feature complement(join(935832..935885,935904..935972, FT 936102..936170,936204..936272)) FT /locus_tag="ROD_08471" FT /note="4 probable transmembrane helices predicted for FT ROD08471 by TMHMM2.0 at aa 26-48, 60-82, 126-148 and FT 155-172" FT misc_feature complement(935853..935885) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS join(936643..936879,936879..937871) FT /pseudo FT /transl_table=11 FT /gene="mdfA" FT /locus_tag="ROD_08491" FT /product="multidrug translocase MdfA (pseudogene)" FT /note="pseudogene, truncated by frameshift mutation" FT misc_feature join(936706..936879,936879..937733) FT /gene="mdfA" FT /locus_tag="ROD_08491" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 2.3e-25" FT /inference="protein motif:PFAM:PF07690" FT CDS complement(937930..938742) FT /transl_table=11 FT /locus_tag="ROD_08501" FT /product="putative hydrolase" FT /db_xref="GOA:D2TQF9" FT /db_xref="InterPro:IPR000150" FT /db_xref="InterPro:IPR006379" FT /db_xref="InterPro:IPR013200" FT /db_xref="InterPro:IPR023214" FT /db_xref="UniProtKB/TrEMBL:D2TQF9" FT /protein_id="CBG87626.1" FT /translation="MAIKLIAVDMDGTFLSDRKSYNRERFLAQYAQMKARGIRFAVASG FT NQYYQLISFFPEIAHEIAFVAENGGWVVSEGEDIFNGELTKSDFAAIVDHLLTRPEVEI FT IACGKNSAYTLKTYSDEMKAVAGMYYHRLEFVDNFDNINDIFFKFGLNISDDRIPEVQR FT ALHAAIGDIMVPVHTGYGSIDLIIPGVHKANGLRLLQARWGISDDEVVAFGDGGNDIEM FT LRQAGYSFAMDHAADVVVATAKYRAGSNNEEGVLDVIDKVLNNEAPFH" FT misc_feature complement(937966..938727) FT /locus_tag="ROD_08501" FT /note="HMMPfam hit to PF08282, HAD superfamily FT hydrolase-like, type 3, score 3.8e-67" FT /inference="protein motif:PFAM:PF08282" FT misc_feature complement(938038..938106) FT /note="PS01229 Hypothetical cof family signature 2." FT /inference="protein motif:Prosite:PS01229" FT CDS complement(938743..939951) FT /transl_table=11 FT /locus_tag="ROD_08511" FT /product="major facilitator superfamily protein" FT /db_xref="GOA:D2TQG0" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TQG0" FT /protein_id="CBG87627.1" FT /translation="MTANSSRKALQRRIGALFMFFFIPGLLMASWATRTPAIRDTLSVS FT TAEMGAVLFGLSIGSMSGILCSAWLVKRFGTRKVIRTTMSFAVLGMLVLCLALWLASPW FT LFALGLGVFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMALTA FT FGVAATSHILLAALVVIAPIFIAIRAIPEGTGKNVNDGSQKHEKGLPFWRDLQLMLIGV FT VVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFAGGWFIDRYSRV FT AVVRASALMGALGIGLIIFVDSAWVAGVSVILWGLGASLGFPLTISAASDTGPDAPTRV FT SVVATTGYLAFLVGPPLLGYLGEHYGLRSAMLVVLALVLLAAVVARAVARPESTTQTAM FT EKG" FT misc_feature complement(join(938785..938853,938866..938934, FT 938971..939039,939049..939108,939127..939195, FT 939253..939321,939379..939438,939448..939516, FT 939574..939642,939652..939720,939739..939807, FT 939850..939918)) FT /locus_tag="ROD_08511" FT /note="12 probable transmembrane helices predicted for FT ROD08511 by TMHMM2.0 at aa 12-34, 49-71, 78-100, 104-126, FT 146-168, 172-191, 211-233, 253-275, 282-301, 305-327, FT 340-362 and 367-389" FT misc_feature complement(938863..939906) FT /locus_tag="ROD_08511" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 9.5e-28" FT /inference="protein motif:PFAM:PF07690" FT sig_peptide complement(939865..939951) FT /locus_tag="ROD_08511" FT /note="Signal peptide predicted for ROD08511 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.981 between residues 29 and 30" FT CDS 940036..940617 FT /transl_table=11 FT /locus_tag="ROD_08521" FT /product="TetR-family transcriptional regulator" FT /db_xref="GOA:D2TQG1" FT /db_xref="InterPro:IPR001647" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR015893" FT /db_xref="UniProtKB/TrEMBL:D2TQG1" FT /protein_id="CBG87628.1" FT /translation="MRRANDPQRREKIITATLEAVKEHGIHAVTHRKIAAIADVPLGSL FT TYYFSGIDELLSEAFNCFTDVMSAQYQAFFSGVTDAQGACQAIAEMIDSSQVTTPENMA FT LMYQLYAFASRKPALKTVMQNWMQRSQQTLEQWFDPGTARALDAFIEGMTLHFVTDRAP FT LSREEILLMVRRVAGEEVRESDCLTSSFQQ" FT misc_feature 940072..940212 FT /locus_tag="ROD_08521" FT /note="HMMPfam hit to PF00440, Transcriptional regulator, FT TetR-like, DNA-binding, bacterial/archaeal, score 6.2e-11" FT /inference="protein motif:PFAM:PF00440" FT misc_feature 940120..940185 FT /note="Predicted helix-turn-helix motif with score 990.000, FT SD 2.56 at aa 29-50, sequence VTHRKIAAIADVPLGSLTYYFS" FT CDS 940750..941031 FT /transl_table=11 FT /locus_tag="ROD_08531" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TQG2" FT /protein_id="CBG87629.1" FT /translation="MRQTYHCFNACLDAVNDGFAWPVAPVSARVEGIKNSIHIFSTFKS FT SNEIVAVEIVQRITKRHNIDSVALMKGNADFLHDGVEISTGAFAQCVL" FT misc_RNA complement(941216..941294) FT /note="Rfam:RF00110;RybB;Score=88.00;positions 1 to 60" FT CDS complement(941374..943059) FT /transl_table=11 FT /locus_tag="ROD_08541" FT /product="putative transport protein" FT /db_xref="GOA:D2TQG3" FT /db_xref="InterPro:IPR006037" FT /db_xref="InterPro:IPR006512" FT /db_xref="InterPro:IPR023017" FT /db_xref="UniProtKB/TrEMBL:D2TQG3" FT /protein_id="CBG87630.1" FT /translation="MNINVADLLNGNYILLLFVVLALGLCLGKLRLGPIQLGNSIGVLV FT VSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSAL FT LIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHFGMASADLSRALDNLSLGY FT ALTYLIGLVSLIVGARYLPKLQHQDLQTCAQQIARERGLDADSNRKVYLPVIRAYRVGP FT ELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHAR FT LDPSFRNGKEVFDRDLLDMRIVTEEIVVKNHNAVGRRLAQLKLTDHGCFLNRVIRSQIE FT MPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFIIGLMIGMI FT TFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGL FT SAGSGIGNGLGAIGGQMLLAGLIVSLVPVIICFLFGAYVLRMNRALLFGAMMGARTCAP FT AMEIISDTARSNIPALGYAGTYAIANVLLTLAGTLIVIVWPGLG" FT misc_feature complement(join(941389..941457,941566..941634, FT 941647..941715,941776..941844,941854..941913, FT 942517..942585,942715..942783,942802..942870, FT 942955..943023)) FT /locus_tag="ROD_08541" FT /note="9 probable transmembrane helices predicted for FT ROD08541 by TMHMM2.0 at aa 13-35, 64-86, 93-115, 159-181, FT 383-402, 406-428, 449-471, 476-498 and 535-557" FT misc_feature complement(941395..941907) FT /locus_tag="ROD_08541" FT /note="HMMPfam hit to PF06826, YidE/YbjL duplication, score FT 3.2e-61" FT /inference="protein motif:PFAM:PF06826" FT misc_feature complement(941944..942153) FT /locus_tag="ROD_08541" FT /note="HMMPfam hit to PF02080, TrkA-C, score 6.3e-12" FT /inference="protein motif:PFAM:PF02080" FT misc_feature complement(942199..942411) FT /locus_tag="ROD_08541" FT /note="HMMPfam hit to PF02080, TrkA-C, score 2.6e-11" FT /inference="protein motif:PFAM:PF02080" FT misc_feature complement(942511..943014) FT /locus_tag="ROD_08541" FT /note="HMMPfam hit to PF06826, YidE/YbjL duplication, score FT 6.2e-66" FT /inference="protein motif:PFAM:PF06826" FT CDS 943328..943705 FT /transl_table=11 FT /locus_tag="ROD_08551" FT /product="putative membrane protein" FT /db_xref="GOA:D2TQG4" FT /db_xref="InterPro:IPR020368" FT /db_xref="UniProtKB/TrEMBL:D2TQG4" FT /protein_id="CBG87631.1" FT /translation="MKHKRGWAGVVCCFVLFVVVCLFLTMDMKGAFRAAGYPEVGLLFF FT TLPGAVASFCSHRREVIRPLLGAMLAAPCCLVLMRLFFTPTRSLWQELAWLFSAVFWCA FT LGALCFLFISSLFRPRQRKKQ" FT misc_feature join(943346..943405,943433..943492,943511..943579, FT 943607..943675) FT /locus_tag="ROD_08551" FT /note="4 probable transmembrane helices predicted for FT ROD08551 by TMHMM2.0 at aa 7-26, 36-55, 62-84 and 94-116" FT CDS complement(943754..944032) FT /transl_table=11 FT /gene="grxA" FT /locus_tag="ROD_08561" FT /product="glutaredoxin 1" FT /db_xref="GOA:D2TQG5" FT /db_xref="InterPro:IPR002109" FT /db_xref="InterPro:IPR011767" FT /db_xref="InterPro:IPR011902" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR014025" FT /db_xref="UniProtKB/TrEMBL:D2TQG5" FT /protein_id="CBG87632.1" FT /translation="MKEKQMFTVIFGRPGCPYCVRAKELAEKLSNERDDFNYRYIDIHA FT EGITKADLEKTVGKPVETVPQIFVDQQHIGGYTDFEAWAKENLNLFA" FT misc_feature complement(943811..944011) FT /gene="grxA" FT /locus_tag="ROD_08561" FT /note="HMMPfam hit to PF00462, Glutaredoxin, score 2.9e-15" FT /inference="protein motif:PFAM:PF00462" FT misc_feature complement(943958..944005) FT /note="PS00195 Glutaredoxin active site." FT /inference="protein motif:Prosite:PS00195" FT CDS 944205..944927 FT /transl_table=11 FT /gene="nfsA" FT /locus_tag="ROD_08571" FT /product="oxygen-insensitive NADPH nitroreductase" FT /EC_number="1.-.-.-" FT /db_xref="GOA:D2TQG6" FT /db_xref="InterPro:IPR000415" FT /db_xref="InterPro:IPR016446" FT /db_xref="UniProtKB/TrEMBL:D2TQG6" FT /protein_id="CBG87633.1" FT /translation="MTPTIDLLRAHRSIRHYTDQPITREQREAILASARATSSSSFLQC FT TSIIRITDTSLREALVPLTGGQQHVADAAEFWVFCADFNRHLQICPDAQLGLAEQLLLG FT VVDTAMMAQNALTAAESLGLGGVYIGGLRNNIEAVTDLLKLPRHVLPLFGLCLGWPADN FT PDLKPRLPTAIIMHENAYQPLDQQALADYDEQLAHYYLTRGSNNRRDTWSDHIRRTLIK FT ENRPFILQYLHKQGWATR" FT misc_feature 944226..944681 FT /gene="nfsA" FT /locus_tag="ROD_08571" FT /note="HMMPfam hit to PF00881, Nitroreductase, score FT 3.3e-38" FT /inference="protein motif:PFAM:PF00881" FT CDS 944988..945890 FT /transl_table=11 FT /gene="rimK" FT /locus_tag="ROD_08581" FT /product="ribosomal protein S6 modification protein" FT /db_xref="GOA:D2TQG7" FT /db_xref="InterPro:IPR004666" FT /db_xref="InterPro:IPR011761" FT /db_xref="InterPro:IPR013651" FT /db_xref="InterPro:IPR013815" FT /db_xref="InterPro:IPR013816" FT /db_xref="InterPro:IPR023533" FT /db_xref="UniProtKB/TrEMBL:D2TQG7" FT /protein_id="CBG87634.1" FT /translation="MKIAILSRDGTLYSCKRLREAAMKRGHLVEILDPLSCYMNINPAA FT SSIHYKGRRLPHFDAVIPRIGSAITFYGTAALRQFELLGSYPLNESVAITRARDKLRSL FT QLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESV FT VDAFRGLNAHILVQEYIKEAKGRDIRCLVVGNEVVAAIERRAKEGDFRSNLHRGGVACI FT ASITAREREIAVKAAQTLGLDVAGVDILRADRGPLVMEVNASPGLEGIEKTTGVDIAGR FT MIQWIERHATPEFSLKSGG" FT misc_feature 945276..945845 FT /gene="rimK" FT /locus_tag="ROD_08581" FT /note="HMMPfam hit to PF08443, ATP-grasp fold, RimK-type, FT score 2.3e-114" FT /inference="protein motif:PFAM:PF08443" FT CDS 946012..946455 FT /transl_table=11 FT /locus_tag="ROD_08591" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR019660" FT /db_xref="UniProtKB/TrEMBL:D2TQG8" FT /protein_id="CBG87635.1" FT /translation="MRQWLDDLGMSFFECDTCQALHLPHMQNFDGIYDAKLDLVDNTLL FT FSAMAEVRPSALLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMRGVSYEQ FT FEWFVRQSEEQISMVILEAGAHQMLFTAEEDAQKNNGEIHFLH" FT CDS 946808..947920 FT /transl_table=11 FT /gene="potF" FT /locus_tag="ROD_08601" FT /product="putrescine ABC transporter, substrate-binding FT protein" FT /db_xref="GOA:D2TQG9" FT /db_xref="InterPro:IPR001188" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:D2TQG9" FT /protein_id="CBG87636.1" FT /translation="MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHVYNWSDYIAPDT FT VANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDVVVPSASFLERQLTAGVFQPLDKS FT KLSGWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGADAPVDSWDLI FT LKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTDAKDYTGPATDLLLKLRPNIR FT YFHSSQYINDLANGDTCVAIGWAGDVWQAANRAKEAKNGINISFSIPKEGAMAFFDVFA FT MPADAKNKEEAYQFLNYLLRPDVIAHISDHVFYANANKEATALVSAEVRDNPGIYPPAE FT VRAKMFTLKVQEPKIDRVRTRAWTKVKSGK" FT sig_peptide 946808..946885 FT /gene="potF" FT /locus_tag="ROD_08601" FT /note="Signal peptide predicted for ROD08601 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.946 between residues 26 and 27" FT misc_feature 946832..947725 FT /gene="potF" FT /locus_tag="ROD_08601" FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein, family 1, score 3.9e-11" FT /inference="protein motif:PFAM:PF01547" FT CDS 948026..949159 FT /transl_table=11 FT /gene="potG" FT /locus_tag="ROD_08611" FT /product="putrescine ABC transporter, ATP-binding protein" FT /db_xref="GOA:D2TQH0" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR005893" FT /db_xref="InterPro:IPR008995" FT /db_xref="InterPro:IPR013611" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TQH0" FT /protein_id="CBG87637.1" FT /translation="MNDATPRPQAKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKG FT EIFALLGASGCGKSTLLRMLAGFEQPTSGQIMLDGVDLAHVPPYLRPINMMFQSYALFP FT HMTVEQNIAFGLKQDKLPKAEIASRVEEMLGLVHMQEFARRKPHQLSGGQRQRVALARS FT LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGATCVMVTHDQEEAMTMAGRIAI FT MNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERQEDGLVLYSPGLVHPLKV FT DPDASVMDNVPVYVALRPEKIELCEEPPADGFNFAIGEVVHIAYLGDLSIYHVRLKSGQ FT MISAQLQNAHRYRKGLPTWGDEVRLCWDADSCVVLTV" FT misc_feature 948158..948703 FT /gene="potG" FT /locus_tag="ROD_08611" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 9.6e-65" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 948179..948202 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 948473..948517 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature 948908..949150 FT /gene="potG" FT /locus_tag="ROD_08611" FT /note="HMMPfam hit to PF08402, Transport-associated OB, FT type 2, score 1.2e-25" FT /inference="protein motif:PFAM:PF08402" FT CDS 949169..950122 FT /transl_table=11 FT /gene="potH" FT /locus_tag="ROD_08621" FT /product="putrescine ABC transporter, permease protein" FT /db_xref="GOA:D2TQH1" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TQH1" FT /protein_id="CBG87638.1" FT /translation="MSTPEPSMRGVTAGGFRLWLARAQMKHGRKLVIALPYVWLILLFL FT LPFLIVFKISLAEMARAIPPYSELMSWADGQLALTLNLNNFLQLTDDPLYFEAYLQSLQ FT VAGISTLCCLLLGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGV FT LNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEASLDLG FT ARPLKTFFTVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQEFFNN FT RDWPVASAVAIVMLLLLIVPIMWFHKHQQKSGGAHG" FT misc_feature 949247..949279 FT /note="PS00133 Zinc carboxypeptidases, zinc-binding region FT 2 signature." FT /inference="protein motif:Prosite:PS00133" FT misc_feature join(949259..949324,949466..949534,949571..949639, FT 949721..949789,949850..949918,950018..950086) FT /gene="potH" FT /locus_tag="ROD_08621" FT /note="6 probable transmembrane helices predicted for FT ROD08621 by TMHMM2.0 at aa 31-52, 100-122, 135-157, FT 185-207, 228-250 and 284-306" FT misc_feature 949463..950113 FT /gene="potH" FT /locus_tag="ROD_08621" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.5e-30" FT /inference="protein motif:PFAM:PF00528" FT misc_feature 949787..949873 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT CDS 950119..950964 FT /transl_table=11 FT /gene="potI" FT /locus_tag="ROD_08631" FT /product="putrescine ABC transporter, permease protein" FT /db_xref="GOA:D2TQH2" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TQH2" FT /protein_id="CBG87639.1" FT /translation="MNNLPVIRSPWRIAILVAGFTFLYAPMLMLVIYSFNSSKLVTVWA FT GWSTRWYGELFRDDAMMSAVGLSLTIAACAATMAAILGTIAAVVMVRFGRFRGANGFAF FT MITAPLVMPDVITGLSLLLLFVALGHVIGWPSDRGMLTIWLAHVTFCTAYVAVVISSRL FT RELDSSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPG FT ATTLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIAWYLMARTEKQRIRDIQRARRG FT " FT misc_feature join(950155..950223,950323..950391,950428..950496, FT 950539..950607,950668..950736,950842..950910) FT /gene="potI" FT /locus_tag="ROD_08631" FT /note="6 probable transmembrane helices predicted for FT ROD08631 by TMHMM2.0 at aa 13-35, 69-91, 104-126, 141-163, FT 184-206 and 242-264" FT misc_feature 950299..950937 FT /gene="potI" FT /locus_tag="ROD_08631" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.0003" FT /inference="protein motif:PFAM:PF00528" FT misc_feature 950308..950340 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 950605..950691 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT CDS 951030..951503 FT /transl_table=11 FT /locus_tag="ROD_08641" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR019703" FT /db_xref="UniProtKB/TrEMBL:D2TR53" FT /protein_id="CBG87640.1" FT /translation="MGLLKKTHHSHARPNVPALVQVAALAIIMIRCLDVLMIVNTLGAR FT GLGEFIYRSVQTWSLTLVFLSSLALVFIEIWCAFSLVKGRNWARWIYLLTQVTAAGYLW FT AASLGYGYPELFSIAGESKREILHSLAMQKLPDALVLCLLFVPAASRRFFQLQ" FT misc_feature join(951087..951155,951198..951266,951285..951353) FT /locus_tag="ROD_08641" FT /note="3 probable transmembrane helices predicted for FT ROD08641 by TMHMM2.0 at aa 20-42, 57-79 and 86-108" FT CDS 951606..952733 FT /transl_table=11 FT /gene="rumB" FT /locus_tag="ROD_08651" FT /product="23S rRNA (uracil-5-)-methyltransferase" FT /EC_number="2.1.1.-" FT /db_xref="GOA:D2TR54" FT /db_xref="InterPro:IPR010280" FT /db_xref="InterPro:IPR011825" FT /db_xref="UniProtKB/TrEMBL:D2TR54" FT /protein_id="CBG87641.1" FT /translation="MHCALYDAGRCRSCQWLTQPPGEQLSAKMADLHHLLAGFPVAEWC FT APVSGPERAFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPF FT IARAGLTPYNVARRRGELKYLLLTESQLDGGMMLRFVLRSENKLAQLRAALPWLQAQLP FT QLKVISVNLQPVHMAIMEGEREIFLTEQQALAERFNNVPLWIRPQSFFQTNPTVASRLY FT ATARDWVRQLPVTHMWDLFCGVGGFGLHCATPEMRLTGIEISPEAIACATQSAAELGLT FT NLQFQALDSTRFATAQESVPQLVLVNPPRRGIGKALCDYLGKMAPQFIIYSSCNAQTMA FT KDIASLAGYRIERVQLFDMFPHTAHYEVLTLLIRN" FT misc_feature 951672..952730 FT /gene="rumB" FT /locus_tag="ROD_08651" FT /note="HMMPfam hit to PF05958, FT (Uracil-5)-methyltransferase, score 1.4e-06" FT /inference="protein motif:PFAM:PF05958" FT misc_feature 952524..952619 FT /note="PS01230 RNA methyltransferase trmA family signature FT 1." FT /inference="protein motif:Prosite:PS01230" FT misc_feature 952674..952706 FT /note="PS01231 RNA methyltransferase trmA family signature FT 2." FT /inference="protein motif:Prosite:PS01231" FT CDS complement(952771..952917) FT /transl_table=11 FT /locus_tag="ROD_08661" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TR55" FT /protein_id="CBG87642.1" FT /translation="MSLLLLHSNNQIMSLKDFYCLFVISFAKIEQYIIMIDRIFSPIDH FT DYY" FT CDS 953046..954353 FT /transl_table=11 FT /locus_tag="ROD_08671" FT /product="possible transport protein" FT /db_xref="GOA:D2TR56" FT /db_xref="InterPro:IPR004703" FT /db_xref="UniProtKB/TrEMBL:D2TR56" FT /protein_id="CBG87643.1" FT /translation="MSSKTFLTEPAILIGLLVGIGYTLDKKSPIKIITGMVSAMVGLMM FT VLFGGFQFSATFKPVAEAVSKAYGVHGYLMDSYAMKAATQIALGDNFGYVGYVFVLAFF FT TNLLLVLFGRFTGAKGIFLTGNTGVSHSQAVLWLIVFWLGFGWVQSIIIAGILTGLFWA FT FATTLIAGPVAKITNNAGFTIAHNQMLGLWFFSKFAHKFGDPQKHDAENLKLPGWLAIF FT NHNVTAIAIVMTLFVGGFLLSTGTDNVQLMAKGKPWYIYIINLGLQFSMYMVILLQGVR FT MMVGEINGSFKGWQDRFIPNAIPAVDVAALLPFSPNAATLGFVFCTFGTIFSMGILLLV FT HSPIMVLPGFVPLFFSGGPIGVLANRLGGYRSVIICTFLLGIIQTFGTVWAIPLSGLAK FT DGVGWTGIFDWATLWPAVCEVLKFIASTFQLGPFAG" FT misc_feature 953052..954284 FT /locus_tag="ROD_08671" FT /note="HMMPfam hit to PF04215, Putative sugar-specific FT permease, SgaT/UlaA, score 4e-86" FT /inference="protein motif:PFAM:PF04215" FT misc_feature join(953058..953117,953136..953204,953316..953384, FT 953445..953513,953523..953591,953706..953774, FT 953817..953885,953997..954065,954075..954140, FT 954159..954227) FT /locus_tag="ROD_08671" FT /note="10 probable transmembrane helices predicted for FT ROD08671 by TMHMM2.0 at aa 5-24, 31-53, 91-113, 134-156, FT 160-182, 221-243, 258-280, 318-340, 344-365 and 372-394" FT CDS 954383..954703 FT /transl_table=11 FT /locus_tag="ROD_08681" FT /product="putative phosphotransferase enzyme II, B FT component" FT /db_xref="GOA:D2TR57" FT /db_xref="InterPro:IPR003501" FT /db_xref="InterPro:IPR013011" FT /db_xref="UniProtKB/TrEMBL:D2TR57" FT /protein_id="CBG87644.1" FT /translation="MKDNINVLFVCGYGVGSSVMLQTVVKKALAKYDFKCDMEHTAAGE FT VGGFTDWADIYAISKKLLDVVSLDPKQGQYLIPIENIMDGEKIAQQIYDVVKVHFPHLI FT KS" FT misc_feature 954398..954673 FT /locus_tag="ROD_08681" FT /note="HMMPfam hit to PF02302, Phosphotransferase system, FT lactose/cellobiose-specific IIB subunit, score 6.9e-07" FT /inference="protein motif:PFAM:PF02302" FT misc_feature 954401..954457 FT /locus_tag="ROD_08681" FT /note="1 probable transmembrane helix predicted for FT ROD08681 by TMHMM2.0 at aa 7-25" FT CDS 954713..956200 FT /transl_table=11 FT /locus_tag="ROD_08691" FT /product="putative sulfatase" FT /db_xref="GOA:D2TR58" FT /db_xref="InterPro:IPR000917" FT /db_xref="InterPro:IPR017849" FT /db_xref="InterPro:IPR017850" FT /db_xref="UniProtKB/TrEMBL:D2TR58" FT /protein_id="CBG87645.1" FT /translation="MKAIILLFDSLNKKYLPAYGDRLTVAPNFQRLAEHCVTFENSYVG FT SMPCMPARREIHTGRYNFLHREWGPLEPFDDSMPEQLKQAGIYTHLISDHLHYWEDGGG FT NYHNRYSSWEIIRGQEGDHWQASVAEPPVPPVLRVPQKQTGGGVSGLWRHDWANRECIQ FT QEADFPQTRVFDAGCAFLEKNHGEDNWLLQVETFDPHEPFYAPQAYLSLYEDSWQGPHY FT DWPRGKVCESEEAVEHIRCCYRALVSMCDRNLGRILDLMDRYDLWRDTLLIVGTDHGFL FT LGEHGWWAKNQMPYYNEVANNPLFIWDPRSAAQGERRQALVQMIDWAPMLYDFFQQPIP FT PDVQGHSLAATFASDRPVRDAALFGVFSGHVNVTDGRYVYMRAALPGREHSIANYTLMP FT TKMNSRYSIEELKVLALAPPFRFTRGLPILRIPAREKYQGVNEVGHLLFDLHNDPQQLN FT PIKDEAIEARMIARLIQLMKESDAPEEQYYRLGLEMA" FT misc_feature 954719..956089 FT /locus_tag="ROD_08691" FT /note="HMMPfam hit to PF00884, Sulphatase, score 5.2e-14" FT /inference="protein motif:PFAM:PF00884" FT CDS complement(956234..956965) FT /transl_table=11 FT /gene="artJ" FT /locus_tag="ROD_08701" FT /product="arginine ABC transporter, substrate-binding FT protein" FT /db_xref="GOA:D2TR59" FT /db_xref="InterPro:IPR001638" FT /db_xref="InterPro:IPR005768" FT /db_xref="InterPro:IPR018313" FT /db_xref="UniProtKB/TrEMBL:D2TR59" FT /protein_id="CBG87646.1" FT /translation="MKKLVLAALLASFAVGASAAEKISFGVSATYPPFESLDASNQIVG FT FDLDLAKALCKQMQAECTFTNHAFDSLIPALKFKKYDAVISGMDITPERSKQVAFTNPY FT YANSALVIAKKDAYKTFADLKGKRIGMENGTTHQKYLHDKHPEVQTVAYDSYQNAIIDL FT KNGRIDGVFGDTAVVNEWLKTNPQLGAATEKVTDPQYFGTGLGIAVRPDNKALLEKLNS FT ALAAIKADGTWQKINDQWFPQ" FT misc_feature complement(956237..956899) FT /gene="artJ" FT /locus_tag="ROD_08701" FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding protein, family 3, score 4e-101" FT /inference="protein motif:PFAM:PF00497" FT misc_feature complement(956792..956833) FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT /inference="protein motif:Prosite:PS01039" FT sig_peptide complement(956909..956965) FT /gene="artJ" FT /locus_tag="ROD_08701" FT /note="Signal peptide predicted for ROD08701 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.992 between residues 19 and 20" FT CDS complement(957138..957806) FT /transl_table=11 FT /gene="artM" FT /locus_tag="ROD_08711" FT /product="arginine ABC transporter, permease protein" FT /db_xref="GOA:D2TR60" FT /db_xref="InterPro:IPR000515" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:D2TR60" FT /protein_id="CBG87647.1" FT /translation="MLEYLPELLKGLHTSLTLTVASIVVALILSLIFTIILTLKTPGVV FT WLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPVLWHLLSEPWLCALIALSLNSAA FT YTTQLFYGAIRAIPEGQWQSCGALGMSKKDTLAILLPYAFKRALSSYSNEVVLVFKSTS FT LAYTITLMEVMGYGQLLYGRTYDVMVFGAAGVIYLIVNGLLTLMMRLIERKALAFERRN FT " FT misc_feature complement(957156..957773) FT /gene="artM" FT /locus_tag="ROD_08711" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 4.6e-08" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(join(957174..957242,957285..957344, FT 957492..957560,957603..957671,957696..957764)) FT /gene="artM" FT /locus_tag="ROD_08711" FT /note="5 probable transmembrane helices predicted for FT ROD08711 by TMHMM2.0 at aa 15-37, 46-68, 83-105, 155-174 FT and 189-211" FT CDS complement(957806..958522) FT /transl_table=11 FT /gene="artQ" FT /locus_tag="ROD_08721" FT /product="arginine ABC transporter, permease protein" FT /db_xref="GOA:D2TR61" FT /db_xref="InterPro:IPR000515" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:D2TR61" FT /protein_id="CBG87648.1" FT /translation="MNEFFPLASAAGMTVGLAVCALILGLALAMLFAVWESVKWRPVAW FT AGSALVTILRGLPEILVVLFIYFGSSQLLLLLSDGFTINLGVVQIPVQMTIENFDVSPF FT LCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKTAIFFRLVMPQMWRHALP FT GLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFNWYIIAAAIYLVITLISQYI FT LRRIDLRATRFERRPG" FT misc_feature complement(957827..958504) FT /gene="artQ" FT /locus_tag="ROD_08721" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 9.2e-17" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(join(957854..957922,958169..958222, FT 958235..958303,958322..958390,958418..958486)) FT /gene="artQ" FT /locus_tag="ROD_08721" FT /note="5 probable transmembrane helices predicted for FT ROD08721 by TMHMM2.0 at aa 13-35, 45-67, 74-96, 101-118 and FT 201-223" FT misc_feature complement(958058..958144) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT sig_peptide complement(958424..958522) FT /gene="artQ" FT /locus_tag="ROD_08721" FT /note="Signal peptide predicted for ROD08721 by SignalP 2.0 FT HMM (Signal peptide probability 0.995) with cleavage site FT probability 0.563 between residues 33 and 34" FT CDS complement(958529..959260) FT /transl_table=11 FT /gene="artI" FT /locus_tag="ROD_08731" FT /product="arginine ABC transporter, substrate-binding FT protein" FT /db_xref="GOA:D2TR62" FT /db_xref="InterPro:IPR001638" FT /db_xref="InterPro:IPR005768" FT /db_xref="InterPro:IPR018313" FT /db_xref="UniProtKB/TrEMBL:D2TR62" FT /protein_id="CBG87649.1" FT /translation="MKKVLIAALIAGFSLSATAAQTIRFATEASYPPFESMDANNKIVG FT FDVDLANALCKEIDATCTFTNQAFDSLIPSLKFRRFDAVMAGMDITPEREKQVLFTTPY FT YDNSALFIGQQGKFTSVEQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAKLDL FT QNGRIDGVFGDTAVVTEWLKDNPKLAPVGDKVTDKDYFGTGLGIAVRQGNTELQQKFNA FT ALEKVKKDGTYETIYNKWFQK" FT misc_feature complement(958532..959194) FT /gene="artI" FT /locus_tag="ROD_08731" FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding protein, family 3, score 4.7e-96" FT /inference="protein motif:PFAM:PF00497" FT misc_feature complement(959087..959128) FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT /inference="protein motif:Prosite:PS01039" FT sig_peptide complement(959204..959260) FT /gene="artI" FT /locus_tag="ROD_08731" FT /note="Signal peptide predicted for ROD08731 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.997 between residues 19 and 20" FT CDS complement(959278..960006) FT /transl_table=11 FT /gene="artP" FT /locus_tag="ROD_08741" FT /product="arginine ABC transporter, ATP-binding protein" FT /db_xref="GOA:D2TR63" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TR63" FT /protein_id="CBG87650.1" FT /translation="MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLL FT RVLNLLEMPRSGTLDIAGNHFDFRKTPSDKAIRDLRQNVGMVFQQYNLWPHLTVQQNLI FT EAPCRVLGLSRDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEPQVL FT LFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGHIVEL FT GDAGCFANPQTEAFKNYLSH" FT misc_feature complement(959356..959925) FT /gene="artP" FT /locus_tag="ROD_08741" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 1.8e-76" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(959539..959583) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(959881..959904) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(960283..960798) FT /transl_table=11 FT /locus_tag="ROD_08751" FT /product="probable lipoprotein" FT /db_xref="UniProtKB/TrEMBL:D2TR64" FT /protein_id="CBG87651.1" FT /translation="MRYSKLSLLAPCALLLSACTTVTPAYKDNGPRAGACVEGGPDSVA FT QQFYDYRIQNRSNDLTALRPYLSDKLAKLLADASRDGQQRQLLSSDPFSSRATLPDSAS FT VASASTIPNRDARNIPLRVELKQGEQRWQDEVLMIHEGQCWVIDDVRYLGGSVHAPAGT FT LRQSVENR" FT sig_peptide complement(960718..960798) FT /locus_tag="ROD_08751" FT /note="Signal peptide predicted for ROD08751 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.787 between residues 27 and 28" FT misc_feature complement(960742..960774) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 960966..961325 FT /transl_table=11 FT /locus_tag="ROD_08761" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR002765" FT /db_xref="UniProtKB/TrEMBL:D2TR65" FT /protein_id="CBG87652.1" FT /translation="MILRIAQQRRVNVQYSTTPTLEGQSIVEYCGVVTGEAILGANIFR FT DFFAGIRDIVGGRSGSYEKELRKAREIAFEELGDQAKALGADAVVGIDIDYETVGKDGS FT MLMVSVSGTAVKTRR" FT misc_feature 961002..961319 FT /locus_tag="ROD_08761" FT /note="HMMPfam hit to PF01906, Protein of unknown function FT DUF74, score 4.8e-64" FT /inference="protein motif:PFAM:PF01906" FT CDS 961322..962155 FT /transl_table=11 FT /locus_tag="ROD_08771" FT /product="putative N-acetylmuramoyl-L-alanine amidase" FT /db_xref="GOA:D2TR66" FT /db_xref="InterPro:IPR002477" FT /db_xref="InterPro:IPR002502" FT /db_xref="UniProtKB/TrEMBL:D2TR66" FT /protein_id="CBG87653.1" FT /translation="MRALLWLVAAALLLTGCAGEQGIIDKPEYQLDTRHQAQAAWPRIK FT VLVIHYTADDFDTSLATLTGKNVSSHYLIPAVPPLHRGKPRIWQLVPEEELAWHAGASD FT WRGATRINDTSIGIELENRGWRKSAGEKYFAPFEPAQIQALIPLAKEIVARYQIKPQNV FT VAHADIAPQRKDDPGPLFPWKQLAQQGIGAWPDAQRVNFYLAGRAPHTPVARESVLDLL FT SRYGYEVKADMSEREQQRVIMAFQMHFRPALWNGVADAQTQAIAEALLEKYGQER" FT sig_peptide 961322..961375 FT /locus_tag="ROD_08771" FT /note="Signal peptide predicted for ROD08771 by SignalP 2.0 FT HMM (Signal peptide probability 0.968) with cleavage site FT probability 0.403 between residues 18 and 19" FT misc_feature 961340..961372 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 961418..961903 FT /locus_tag="ROD_08771" FT /note="HMMPfam hit to PF01510, N-acetylmuramoyl-L-alanine FT amidase, family 2, score 1.1e-42" FT /inference="protein motif:PFAM:PF01510" FT CDS complement(962195..963208) FT /transl_table=11 FT /locus_tag="ROD_08781" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TR67" FT /db_xref="InterPro:IPR001509" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TR67" FT /protein_id="CBG87654.1" FT /translation="MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLEKMGA FT EFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAW FT GVRNFIHISSPSLYFDYHHHRAIKEEFRPHRFANEFARSKAAGEEVISLLAQANPQTRF FT TVLRPQSLFGPHDKVFIPRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLASQES FT CDNLPSGRAYNITNGEPKTLRSIVQKLIDELNIHCRIRSVPYPMLDMIARSMERFGNKS FT AKEPALTHYGVSKLNFDFTLDITRAENELGYKPVVTLDEGIIKTAAWLRDHGTLLR" FT misc_feature complement(962504..963202) FT /locus_tag="ROD_08781" FT /note="HMMPfam hit to PF01370, NAD-dependent FT epimerase/dehydratase, score 1.8e-19" FT /inference="protein motif:PFAM:PF01370" FT CDS complement(963300..964736) FT /transl_table=11 FT /locus_tag="ROD_08791" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TR68" FT /db_xref="InterPro:IPR001509" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR021295" FT /db_xref="UniProtKB/TrEMBL:D2TR68" FT /protein_id="CBG87655.1" FT /translation="MPQRILVLGASGYIGQHLVQALSQRGHRVLAAARRTERLEKMQLA FT NVSCHKVDLNWPHNLPALLEQVDTLYYLVHGMGEGGDFIAHERQVALNVRDALRETPVG FT QLIFLSSLQAPEHEQSDHLRARQLTADTLRESGVPLTELRAGIIVGAGSAAFEVMRDMV FT YNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAHEHRVLEAAGPQVLSYQQQFEHF FT MAVSGKRRPLIPIPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDRELRALIP FT QTLIAFDDAVRRTLKEEEKLVNSSDWGYDAQAFARWRPEYGFFAKQAGFTVNTSASRKA FT LWQVINRLGGKEGYFFGNVLWKTRAALDLLVGHRLAKGRPAHPYLQPGDTVDSWKVIIV FT EPEKQLTLLFGMKAPGLGRLSFTLEDKGSHRQLDVRAWWHPHGMPGLFYWLLMIPAHLF FT IFRGMAKKIASLAEQITDNS" FT misc_feature complement(963360..963428) FT /locus_tag="ROD_08791" FT /note="1 probable transmembrane helix predicted for FT ROD08791 by TMHMM2.0 at aa 437-459" FT misc_feature complement(964518..964724) FT /locus_tag="ROD_08791" FT /note="HMMPfam hit to PF01370, NAD-dependent FT epimerase/dehydratase, score 4.8e-11" FT /inference="protein motif:PFAM:PF01370" FT CDS complement(964747..965748) FT /transl_table=11 FT /gene="ltaE" FT /locus_tag="ROD_08801" FT /product="low specificity L-threonine aldolase" FT /EC_number="4.1.2.5" FT /db_xref="GOA:D2TR69" FT /db_xref="InterPro:IPR001597" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015422" FT /db_xref="InterPro:IPR015424" FT /db_xref="InterPro:IPR023603" FT /db_xref="UniProtKB/TrEMBL:D2TR69" FT /protein_id="CBG87656.1" FT /translation="MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNQLQRYAAE FT LSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPID FT AATDGTLPLDKVAAKIKPDDIHFARTKLLSLENTHNGKVLPREYLKEAWTFSRQHGLAL FT HVDGARIFNAVVAYGCELQEITQYCDSFSICLSKGLGTPVGSLLVGSHDYIKRATRWRK FT MTGGGMRQAGILAAAGLYALKNNVARLQEDHDNAAWLAQQLREAGAEVMRHDTNMLFVR FT VGEENAAALGAYLKERRVLINASPVVRLVTHLDVSREQLADVVAHWRAFLTR" FT misc_feature complement(964891..965742) FT /gene="ltaE" FT /locus_tag="ROD_08801" FT /note="HMMPfam hit to PF01212, Aromatic amino acid FT beta-eliminating lyase/threonine aldolase, score 8.6e-154" FT /inference="protein motif:PFAM:PF01212" FT CDS complement(965787..967505) FT /transl_table=11 FT /gene="poxB" FT /locus_tag="ROD_08811" FT /product="pyruvate oxidase" FT /db_xref="GOA:D2TR70" FT /db_xref="InterPro:IPR000399" FT /db_xref="InterPro:IPR011766" FT /db_xref="InterPro:IPR012000" FT /db_xref="InterPro:IPR012001" FT /db_xref="UniProtKB/TrEMBL:D2TR70" FT /protein_id="CBG87657.1" FT /translation="MKQTVAAFIAKTLEQAGVKRIWGVTGDSLNGLSDSLNRMGTIEWM FT STRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPS FT SEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDV FT ALKPAPEGASSHWYHAPLPIVTPAEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEF FT AAKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAF FT YPTDAKIIQIDINPASIGAHSKVDMALVGDIKATLTALLPLVEEKTERKFLDKALSDYR FT DARKGLDDLAKPSDKAIHPQYLAQRISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRL FT LGSFNHGSMANAMPQALGAQATAPDRQVVAMCGDGGFSMLMGDFLSVAQMKLPVKIVVF FT NNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGIPGIRVEKATDVDEALQRAFAI FT DGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR" FT misc_feature complement(965931..966371) FT /gene="poxB" FT /locus_tag="ROD_08811" FT /note="HMMPfam hit to PF02775, Thiamine pyrophosphate FT enzyme, C-terminal TPP-binding, score 2.5e-61" FT /inference="protein motif:PFAM:PF02775" FT misc_feature complement(966201..966260) FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT /inference="protein motif:Prosite:PS00187" FT misc_feature complement(966549..966935) FT /gene="poxB" FT /locus_tag="ROD_08811" FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central region, score 4.5e-47" FT /inference="protein motif:PFAM:PF00205" FT misc_feature complement(966990..967499) FT /gene="poxB" FT /locus_tag="ROD_08811" FT /note="HMMPfam hit to PF02776, Thiamine pyrophosphate FT enzyme, N-terminal TPP binding region, score 2.5e-81" FT /inference="protein motif:PFAM:PF02776" FT CDS complement(967676..968644) FT /transl_table=11 FT /gene="hcr" FT /locus_tag="ROD_08821" FT /product="NADH oxidoreductase" FT /EC_number="1.-.-.-" FT /db_xref="GOA:D2TR71" FT /db_xref="InterPro:IPR000951" FT /db_xref="InterPro:IPR001041" FT /db_xref="InterPro:IPR001433" FT /db_xref="InterPro:IPR008333" FT /db_xref="InterPro:IPR012675" FT /db_xref="InterPro:IPR017927" FT /db_xref="InterPro:IPR017938" FT /db_xref="UniProtKB/TrEMBL:D2TR71" FT /protein_id="CBG87658.1" FT /translation="MTMPTNQCPWRMQVHHIHQETPDVWTIALLCHDYYPYRAGQYALV FT SVRNSADTLRAYTLSSTPGVSEYITLTVRRIDEGAGSQWLTRDVKRGDYIWLSDAMGEF FT TCDDKAEDKFLMLAAGCGVTPIMSMRRWLAKYRPQADVQVIYNVRSPQDVIFAQEWRQY FT PVTLVAENNASHGFVAGRLTSELLQQVPDLASRTVMTCGPAPYMDLVEQEVKALGVTRF FT FKEKFFTPVAAAANSGLKFTKLQPAKEFYAPVGTTLLEALESNKVPVTVACRAGVCGCC FT KTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCHPQGDLVLA" FT misc_feature complement(967694..967924) FT /gene="hcr" FT /locus_tag="ROD_08821" FT /note="HMMPfam hit to PF00111, Ferredoxin, score 3e-20" FT /inference="protein motif:PFAM:PF00111" FT misc_feature complement(968009..968302) FT /gene="hcr" FT /locus_tag="ROD_08821" FT /note="HMMPfam hit to PF00175, Oxidoreductase FT FAD/NAD(P)-binding, score 4.4e-08" FT /inference="protein motif:PFAM:PF00175" FT misc_feature complement(968351..968536) FT /gene="hcr" FT /locus_tag="ROD_08821" FT /note="HMMPfam hit to PF00970, Oxidoreductase FAD-binding FT region, score 2.8e-09" FT /inference="protein motif:PFAM:PF00970" FT CDS complement(968656..970308) FT /transl_table=11 FT /gene="hcp" FT /locus_tag="ROD_08831" FT /product="hydroxylamine reductase" FT /EC_number="1.7.-.-" FT /db_xref="GOA:D2TR72" FT /db_xref="InterPro:IPR004137" FT /db_xref="InterPro:IPR010048" FT /db_xref="InterPro:IPR011254" FT /db_xref="InterPro:IPR016099" FT /db_xref="InterPro:IPR016100" FT /db_xref="UniProtKB/TrEMBL:D2TR72" FT /protein_id="CBG87659.1" FT /translation="MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIASLQGL FT SAWAVKAREYGIINHEVDNFALRAFFSTLTNVNFDSPRIVGYAREAIAMREALKAQCLQ FT QDASARVANPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAA FT AYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPSDMNALLECAMEIGQMNFKVMSILDAGE FT TTKYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYP FT ELRKFKHLVGNYGSGWQNQQVEFARFPGPVVMTSNCIIDPTVGAYDDRIWTRSIVGWPG FT VSHLEGDDFAPVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHI FT FLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQC FT NDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAP FT GFFTPDLLAILNEKFGLRSVTTVEEDMKQLLSA" FT misc_feature complement(968665..970308) FT /gene="hcp" FT /locus_tag="ROD_08831" FT /note="HMMPfam hit to PF03063, Prismane, score 1.4e-258" FT /inference="protein motif:PFAM:PF03063" FT misc_feature complement(970225..970248) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(970452..971351) FT /transl_table=11 FT /locus_tag="ROD_08841" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR005642" FT /db_xref="UniProtKB/TrEMBL:D2TR73" FT /protein_id="CBG87660.1" FT /translation="MFSGLLIILLPLIAGYLIPLRHRAALKLINQLLSWMVYLILFFMG FT ISLAFLDNLASNLLAIFHYSAVSITVILLCNIAALLWLERALPWQHHHQQEKLPSRIAM FT ALESLKLCGVVVAGFLLGLSGFSLLQHATEASEYTLILLLLLVGIQLRNSGMTLKQIVL FT NRRGMIVAVVVVVSSLAGGIINAFILDLPIKTAMAMASGFGWYSLSGILLTESFGPVIG FT SAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRTGGLEIVPAAIV FT HGFVLSLLVPILMAFFSA" FT misc_feature complement(970455..971027) FT /locus_tag="ROD_08841" FT /note="HMMPfam hit to PF03956, Protein of unknown function FT DUF340, prokaryotic membrane, score 9.9e-85" FT /inference="protein motif:PFAM:PF03956" FT misc_feature complement(join(970461..970529,970674..970742, FT 970785..970853,970887..970940,970953..971021, FT 971103..971171,971199..971258,971292..971342)) FT /locus_tag="ROD_08841" FT /note="8 probable transmembrane helices predicted for FT ROD08841 by TMHMM2.0 at aa 4-20, 32-51, 61-83, 111-133, FT 138-155, 167-189, 204-226 and 275-297" FT misc_feature complement(970932..971051) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT /inference="protein motif:Prosite:PS00041" FT CDS complement(971510..972205) FT /transl_table=11 FT /gene="aqpZ" FT /locus_tag="ROD_08851" FT /product="aquaporin Z" FT /db_xref="GOA:D2TR74" FT /db_xref="InterPro:IPR000425" FT /db_xref="InterPro:IPR012269" FT /db_xref="InterPro:IPR022357" FT /db_xref="InterPro:IPR023271" FT /db_xref="InterPro:IPR023743" FT /db_xref="UniProtKB/TrEMBL:D2TR74" FT /protein_id="CBG87661.1" FT /translation="MLRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFAGVALAFGL FT TVLTMAYAVGHISGGHFNPAVTLGLWAGGRFATKEVIGYIIAQVIGGIIAAAALYLIAS FT GKAGFDAAASGFAANGYGEHSPGGYSMLSAIVIEIILTAGFLLVIHGATDKRAPAGFAP FT IAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGIAGGLI FT YRTLLEKRD" FT misc_feature complement(join(971525..971593,971663..971731, FT 971750..971818,971897..971965,972041..972109, FT 972119..972187)) FT /gene="aqpZ" FT /locus_tag="ROD_08851" FT /note="6 probable transmembrane helices predicted for FT ROD08851 by TMHMM2.0 at aa 7-29, 33-55, 81-103, 130-152, FT 159-181 and 205-227" FT misc_feature complement(971537..972205) FT /gene="aqpZ" FT /locus_tag="ROD_08851" FT /note="HMMPfam hit to PF00230, Major intrinsic protein, FT score 4.6e-51" FT /inference="protein motif:PFAM:PF00230" FT misc_feature complement(971999..972025) FT /note="PS00221 MIP family signature." FT /inference="protein motif:Prosite:PS00221" FT sig_peptide complement(972128..972205) FT /gene="aqpZ" FT /locus_tag="ROD_08851" FT /note="Signal peptide predicted for ROD08851 by SignalP 2.0 FT HMM (Signal peptide probability 0.983) with cleavage site FT probability 0.918 between residues 26 and 27" FT misc_feature complement(972146..972178) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 972607..974268 FT /transl_table=11 FT /locus_tag="ROD_08871" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR022602" FT /db_xref="UniProtKB/TrEMBL:D2TR75" FT /protein_id="CBG87662.1" FT /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLL FT LSPEIELYHFRRDDFWFPPGDVNGREHHLHIVLTFRESKPGRHRGRRYRPLEACWSPCH FT DGYRRIFYRLEGDSAEDGSVMTLRSFLDGDGHPLPVDDINDLARHLVRLMPVLRLRDAR FT FMRRIRNGTVPEVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFTE FT QGTSAHSRHRLMRRRSTNEQRSWRYLDIINRMIDKPGGRSHRVILLGLFSTLLQAKGTV FT RLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRITTTNSGELLSLTPVEHVCRL FT VRDSSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELAR FT QCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNND FT REEEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNTRKIITKAIHRSSKPDL FT AIEVAMEAGRRGVDAVPVLLRKMFSRVLWLARGRAD" FT misc_feature 972691..972714 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(974265..975215) FT /transl_table=11 FT /locus_tag="ROD_08881" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007488" FT /db_xref="UniProtKB/TrEMBL:D2TR76" FT /protein_id="CBG87663.1" FT /translation="MTQITDNTWYTSDVGSPLQLFMRLARGQLLLGKFWRKASFRRKFL FT LRSLLMPRATSQLLGNLTQWPELDTLLTRQPRLPIRLHRPYMAVNIKRDTALNALCTHY FT ETMRNLLSREQQASYLSHYGLNLAQMTAKNDTPFQLDLVSLVSLDKEGESTVVIRDEQK FT RILAEITFTFCHLHGKRTLFIGGLQGAANDVAHEVIQQATKNCYGLFPKRIVMEALCQF FT ARVAQAEQILAVSNAVHVYRCWRYMDKKTQMHADYDAFWASLGGEKTDGDYFSLPLSIA FT RKSEAEIASKKRAEYRRRYALLDSVVEQVAQQFTN" FT misc_feature complement(974274..975140) FT /locus_tag="ROD_08881" FT /note="HMMPfam hit to PF04393, Protein of unknown function FT DUF535, score 9.1e-92" FT /inference="protein motif:PFAM:PF04393" FT CDS 975361..976479 FT /transl_table=11 FT /gene="macA" FT /locus_tag="ROD_08891" FT /product="macrolide-specific efflux protein" FT /db_xref="GOA:D2TR77" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:D2TR77" FT /protein_id="CBG87664.1" FT /translation="MGIKGNKIKKRYLLVIFILILGGVALWRTLNAPLPNYQTLIVRPG FT DLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKE FT VEATLMELRAQRQQAEAELKLARVTYGRQQQLAKTQAVSRQDLDTAATEMAVKQAQIGT FT IDAQIKRNQASLDTARTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS FT TMLVKAQVSEADVIYLKPGLKAWFTVLGDPQTRYEGVLKDVLPTPEKVNDAIFYYARFE FT VPNPKGILRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVTLLRNGETREREVA FT IGARNDTDVEIVKGLEAGDEVVIGEGKPGAAQ" FT sig_peptide 975361..975453 FT /gene="macA" FT /locus_tag="ROD_08891" FT /note="Signal peptide predicted for ROD08891 by SignalP 2.0 FT HMM (Signal peptide probability 0.608) with cleavage site FT probability 0.548 between residues 31 and 32" FT misc_feature 975397..975450 FT /gene="macA" FT /locus_tag="ROD_08891" FT /note="1 probable transmembrane helix predicted for FT ROD08891 by TMHMM2.0 at aa 13-30" FT misc_feature 975541..976062 FT /gene="macA" FT /locus_tag="ROD_08891" FT /note="HMMPfam hit to PF00529, Secretion protein HlyD, FT score 5.9e-10" FT /inference="protein motif:PFAM:PF00529" FT CDS 976476..978422 FT /transl_table=11 FT /gene="macB" FT /locus_tag="ROD_08901" FT /product="macrolide export ATP-binding/permease protein" FT /EC_number="3.6.3.-" FT /db_xref="GOA:D2TR78" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR003838" FT /db_xref="InterPro:IPR017871" FT /db_xref="InterPro:IPR017911" FT /db_xref="UniProtKB/TrEMBL:D2TR78" FT /protein_id="CBG87665.1" FT /translation="MTALLDLSNIRRSYPSGEEQVEVLKGINLQINAGEMVAIVGASGS FT GKSTLMNILGCLDKPTSGTYRVAGRDVSTLDRDALAQLRREHFGFIFQRYHLLSHLSAA FT QNVEVPAVYAGVERKQRLARAQALLQRLGLGERVEYHPSQLSGGQQQRVSIARALMNGG FT QVILADEPTGALDSRSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIHDGEIV FT RNPPSRPVPQGKGIQEPTVTTASGWSQFVSGFREALTMAWLAMAANKMRTLLTMLGIII FT GIASVVSIVVVGDAAKQLVLADIRAIGTNTIDIYPGKDYGDDDPQYQQALKYDDLIAIQ FT KQPWVTSATPAVSQNLRLRYGNIDVAASANGVNGDYFNVYGMTFREGNTFNREQLNGRA FT QVVVLDSNARRQLFPHKASVTGEVILVGNMPATVIGVTEEKQSMFGSSKILRVWLPYST FT MSGRIMGQSWLNSITVRVKDGFDSAQAEQQLTRLLTLRHGKKDFFTWNMDEVLKTAEKT FT TRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEA FT VLVCLVGGALGIGLSMLIAFTLQLFLPGWEIGFSPMALLTAFLCSTFTGILFGWLPARN FT AARLDPVDALARE" FT misc_feature 976575..977132 FT /gene="macB" FT /locus_tag="ROD_08901" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 1.1e-57" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 976596..976619 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 976908..976952 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature join(977292..977360,978054..978122,978189..978257, FT 978300..978368) FT /gene="macB" FT /locus_tag="ROD_08901" FT /note="4 probable transmembrane helices predicted for FT ROD08901 by TMHMM2.0 at aa 273-295, 527-549, 572-594 and FT 609-631" FT misc_feature 977880..978398 FT /gene="macB" FT /locus_tag="ROD_08901" FT /note="HMMPfam hit to PF02687, Protein of unknown function FT DUF214, permase predicted, score 5.5e-56" FT /inference="protein motif:PFAM:PF02687" FT CDS complement(978548..978769) FT /transl_table=11 FT /gene="cspD" FT /locus_tag="ROD_08911" FT /product="cold shock-like protein CspD" FT /db_xref="GOA:D2TR79" FT /db_xref="InterPro:IPR002059" FT /db_xref="InterPro:IPR011129" FT /db_xref="InterPro:IPR012156" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR012751" FT /db_xref="InterPro:IPR016027" FT /db_xref="InterPro:IPR019844" FT /db_xref="UniProtKB/TrEMBL:D2TR79" FT /protein_id="CBG87666.1" FT /translation="METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAG FT QPVQFDVHQGPKGNHASVIVPIEAEAVA" FT misc_feature complement(978569..978769) FT /gene="cspD" FT /locus_tag="ROD_08911" FT /note="HMMPfam hit to PF00313, Cold-shock protein, FT DNA-binding, score 1.3e-39" FT /inference="protein motif:PFAM:PF00313" FT misc_feature complement(978668..978727) FT /note="PS00352 'Cold-shock' DNA-binding domain signature." FT /inference="protein motif:Prosite:PS00352" FT CDS 979091..979411 FT /transl_table=11 FT /gene="clpS" FT /locus_tag="ROD_08921" FT /product="ATP-dependent Clp protease adaptor protein" FT /db_xref="GOA:D2TR80" FT /db_xref="InterPro:IPR003769" FT /db_xref="InterPro:IPR014719" FT /db_xref="InterPro:IPR022935" FT /db_xref="UniProtKB/TrEMBL:D2TR80" FT /protein_id="CBG87667.1" FT /translation="MGKTNDWLDFDQLAADKVRDALKPPSMYKVILVNDDYTPMEFVID FT VLQKFFSYDVERATQLMLAVHYQGKAICGIFTAEVAETKVAMVNKYARENEHPLLCTLE FT KA" FT misc_feature 979154..979399 FT /gene="clpS" FT /locus_tag="ROD_08921" FT /note="HMMPfam hit to PF02617, Adaptor protein ClpS, core, FT score 2.9e-49" FT /inference="protein motif:PFAM:PF02617" FT CDS 979442..981718 FT /transl_table=11 FT /gene="clpA" FT /locus_tag="ROD_08931" FT /product="ATP-dependent Clp protease ATP-binding subunit" FT /db_xref="GOA:D2TR81" FT /db_xref="InterPro:IPR001270" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR003959" FT /db_xref="InterPro:IPR004176" FT /db_xref="InterPro:IPR013093" FT /db_xref="InterPro:IPR013461" FT /db_xref="InterPro:IPR018368" FT /db_xref="InterPro:IPR019489" FT /db_xref="InterPro:IPR023150" FT /db_xref="UniProtKB/TrEMBL:D2TR81" FT /protein_id="CBG87668.1" FT /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE FT ACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVT FT GANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPGHASDPGNQPGNEEQA FT GGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTA FT IAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSI FT LFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARR FT FQKIDITEPSVDETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI FT DVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKM FT LVFGQDNAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELL FT RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNL FT LLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMGEIKKV FT FTPEFRNRLDNIIWFEHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKG FT YDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNALTYGFQSAQKHK FT PEAAH" FT misc_feature 979478..979630 FT /gene="clpA" FT /locus_tag="ROD_08931" FT /note="HMMPfam hit to PF02861, Clp, N-terminal, score FT 7.5e-17" FT /inference="protein motif:PFAM:PF02861" FT misc_feature 980066..980650 FT /gene="clpA" FT /locus_tag="ROD_08931" FT /note="HMMPfam hit to PF00004, AAA ATPase, core, score FT 5.3e-22" FT /inference="protein motif:PFAM:PF00004" FT misc_feature 980081..980104 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 980345..980383 FT /note="PS00870 Chaperonins clpA/B signature 1." FT /inference="protein motif:Prosite:PS00870" FT misc_feature 980897..981382 FT /gene="clpA" FT /locus_tag="ROD_08931" FT /note="HMMPfam hit to PF07724, ATPase AAA-2, score 1.7e-88" FT /inference="protein motif:PFAM:PF07724" FT misc_feature 980924..980947 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 980993..981049 FT /note="PS00871 Chaperonins clpA/B signature 2." FT /inference="protein motif:Prosite:PS00871" FT misc_feature complement(join(981787..990423,1027609..1036635)) FT /note="CR_GI2" FT CDS complement(981787..982971) FT /transl_table=11 FT /locus_tag="ROD_08941" FT /product="putative membrane fusion protein of T1SS" FT /db_xref="GOA:D2TR82" FT /db_xref="InterPro:IPR003997" FT /db_xref="InterPro:IPR006144" FT /db_xref="InterPro:IPR010129" FT /db_xref="UniProtKB/TrEMBL:D2TR82" FT /protein_id="CBG87669.1" FT /translation="MNGFDKVGSGLRWLRRHFFGMGQSVIWLCVLLLGLFWLWACMFRL FT DEVTTGTGKIIPSAREQLIQSLEGGILTEMKVQEGDIVQAGQVLARLDPTIAGAGVDEA FT QGKLRAALAMFSRLHAEVDGTPLMFPPELKGFPQLLEDETSLYHSRQNNLKASLSGLQD FT GLALVNKELRLTASLVAKGAASDVEVLRLRRQANDLQSKIDDTRNQYIVKAREELAKAA FT AEVEEQKSVIRGRADSLKRTTLYAPVKGIVKNIEVNTIGGVVQPRGNVMEIVPIDDRLL FT VEVEISPRDVAFITPGQRAKVKLTAYDYHIYGGLEGKVVFISPDTIQDEVHRDRYYYRV FT YVRTEKDYLTNQLGKQFPLYPGMIATADIHTGSKTIMEYLIKPLNRAREALRER" FT misc_feature complement(981829..981897) FT /note="PS00543 HlyD family secretion proteins signature." FT /inference="protein motif:Prosite:PS00543" FT misc_feature complement(982006..982236) FT /locus_tag="ROD_08941" FT /note="HMMPfam hit to PF00529, Secretion protein HlyD, FT score 8.8e-06" FT /inference="protein motif:PFAM:PF00529" FT misc_feature complement(982015..982062) FT /note="PS00225 Crystallins beta and gamma 'Greek key' motif FT signature." FT /inference="protein motif:Prosite:PS00225" FT misc_feature complement(982633..982794) FT /locus_tag="ROD_08941" FT /note="HMMPfam hit to PF00529, Secretion protein HlyD, FT score 1.1e-08" FT /inference="protein motif:PFAM:PF00529" FT misc_feature complement(982855..982923) FT /locus_tag="ROD_08941" FT /note="1 probable transmembrane helix predicted for FT ROD08941 by TMHMM2.0 at aa 17-39" FT CDS complement(982971..985145) FT /transl_table=11 FT /locus_tag="ROD_08951" FT /product="putative ATP-binding protein of T1SS" FT /db_xref="GOA:D2TR83" FT /db_xref="InterPro:IPR001140" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR011527" FT /db_xref="InterPro:IPR017750" FT /db_xref="InterPro:IPR017940" FT /db_xref="UniProtKB/TrEMBL:D2TR83" FT /protein_id="CBG87670.1" FT /translation="MTHKQAGTDAGGAPPRHYNDWLELLLLIARFYRIDGSAERVRGEA FT EWRHTQMKEEALVEMMARHLGLCAIFDRFNEGLLDPWRLPMIVDFGERGLGVIEAISAD FT GEVEVRFSGETPLATRLTRQQVCEAAKRVVRVKPEKAVPDARVDDYIKPYEENWLRRTI FT LQEWPGYINVMAASLVANVLTLSAMLFSMQVYDRVIPAQSTPTLWVLFSGVAIAMTFVY FT VMRMARTWISDTLGKRADVRISDRVFGHALRLRSEARPKSTGSFIAQIRELEQIRELIT FT STTIGAIADLPFSLLFLALLWLMGGWLALVPLVAIPLIVLPGQLLQPALAKLSRETMRE FT SALRNAILVESAQALDDIKSLRAEPYFQNQWNHLTATIGDTARRQRFVSGLLINWTAEV FT QTLAYVTVILIGAFFAMEGEISTGVLIGCSMLASRIMTPLTQLAMVMTRWQQAKVAREG FT VESLLKSEVDAPENGSQIALSKIHGEFVIKDMRYRYDEESSASVLDIASLTIRPGEKVA FT VLGRNGSGKSTLLQLLCGLLHPREGTLLLDGVKMASIDPQCVRRDVAYLSQQSALFYGT FT VKQNLLLGAPTASDEQILAALELSGAIHCVRSLPEGLDYLLMEGGRGLSGGQRQQLLLA FT RTLLRDPQILILDEPTAWLDDGMEKHIVEGMKQWLGQRTLIVATHRPAVLQLTERVLFI FT DNGKIMRDGSREEILRPSPRPATVKSQEVA" FT misc_feature complement(983055..983609) FT /locus_tag="ROD_08951" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 2e-55" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(983565..983588) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(983829..984638) FT /locus_tag="ROD_08951" FT /note="HMMPfam hit to PF00664, ABC transporter, FT transmembrane region, score 6.5e-17" FT /inference="protein motif:PFAM:PF00664" FT misc_feature complement(join(984198..984266,984474..984527, FT 984570..984638)) FT /locus_tag="ROD_08951" FT /note="3 probable transmembrane helices predicted for FT ROD08951 by TMHMM2.0 at aa 170-192, 207-224 and 294-316" FT CDS complement(985148..986647) FT /transl_table=11 FT /locus_tag="ROD_08961" FT /product="putative outer membrane efflux protein of T1SS" FT /db_xref="GOA:D2TR84" FT /db_xref="InterPro:IPR003423" FT /db_xref="UniProtKB/TrEMBL:D2TR84" FT /protein_id="CBG87671.1" FT /translation="MVLSATVHSLNVDVMNKNKITLIAALLTLSVSAYSRDINSTNEGA FT SGFWGAFNNYQPDGGKAVTAPDNDGLVSTPATRRIGNQHNGINDNAWWSMIHDAVMYHP FT SIRSEIATLDAAGFNIDVAAAGYLPTLSAGVTSDRQQDEASGHIATVGLSQMLYDFGKT FT GSAVDEATAKYIEQKSGVLEQIDDIVRKTALALNEAHRYRQLLDIAEQHVLAVNDVWQL FT TQLRAEAGASSSIDPVQAEARVKEAQAGAHNAAIKLQQQEDHLAFLLGYRQPAQAIPSP FT TEVFTRALPTDADASLNPTLLKAQAGLAVAQAGLRNAKAQNYPTVSLEMNSNRYLGDIS FT NYQSHDHYNNVYVSVSGKLYQGGALQAQQNASASALAAAQTNVEKVRLSIADEQRGYLT FT SIDGLQRNIEILNGRLDTITRTRELYKMQYLSLGTRNVLDLLNAEQEISSSQQDLINAR FT HDLWSAEIGYLASSGLARRYFGLENSSLGGFTIEAAQPERR" FT misc_feature complement(985229..985792) FT /locus_tag="ROD_08961" FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 7.3e-16" FT /inference="protein motif:PFAM:PF02321" FT misc_feature complement(985838..986374) FT /locus_tag="ROD_08961" FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 1.9e-20" FT /inference="protein motif:PFAM:PF02321" FT CDS complement(join(986716..990423,1027609..1033845)) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_08971" FT /product="large repetitive protein (pseudogene)" FT /note="pseudogene, probable type I secreted protein, FT disrupted by prophage CRP99 insertion" FT misc_feature complement(989473..989526) FT /locus_tag="ROD_08971" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 92" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(990424..1027608) FT /note="prophage CRP99" FT CDS complement(990521..991081) FT /transl_table=11 FT /gene="inv" FT /locus_tag="ROD_08981" FT /product="phage DNA invertase" FT /db_xref="GOA:D2TR85" FT /db_xref="InterPro:IPR006118" FT /db_xref="InterPro:IPR006119" FT /db_xref="InterPro:IPR006120" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:D2TR85" FT /protein_id="CBG87673.1" FT /translation="MAVIGYIRVSTIDQNSDLQRNALISANCDHIFEDRMSGKVANRPG FT LKRALKRINSGDTLVVWKLDRLGRSVKNLVSLISELHERGAHFRSLTDSIDTSSAMGRF FT FFHVMSALAEMERELIVERTVAGLAAARAKGRTGGRPKALQPHEREQIARLLDKGHTRK FT QLSIIYDVGLSTLYRYFPVEAER" FT misc_feature complement(990533..990667) FT /gene="inv" FT /locus_tag="ROD_08981" FT /note="HMMPfam hit to PF02796, Resolvase, helix-turn-helix FT region, score 1.1e-12" FT /inference="protein motif:PFAM:PF02796" FT misc_feature complement(990539..990604) FT /note="Predicted helix-turn-helix motif with score FT 1805.000, SD 5.33 at aa 160-181, sequence FT HTRKQLSIIYDVGLSTLYRYFP" FT misc_feature complement(990671..991075) FT /gene="inv" FT /locus_tag="ROD_08981" FT /note="HMMPfam hit to PF00239, Resolvase, N-terminal, score FT 5e-66" FT /inference="protein motif:PFAM:PF00239" FT misc_feature complement(990878..990916) FT /note="PS00398 Site-specific recombinases signature 2." FT /inference="protein motif:Prosite:PS00398" FT misc_feature complement(991040..991066) FT /note="PS00397 Site-specific recombinases active site." FT /inference="protein motif:Prosite:PS00397" FT misc_feature complement(991149..995666) FT /note="invertible tail fibre region of prophage CRP99" FT CDS join(991149..991355,994063..994227) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_08982" FT /product="putative phage tail fibre protein (pseudogene)" FT /note="pseudogene, alternative tail fibre tip, disrupted by FT ISCro1 insertion" FT repeat_region 991149..991170 FT /note="22 bp inverted repeat of prophage CRP99 invertible FT tail fibre region" FT repeat_region complement(991348..991355) FT /note="8 bp direct repeat flanking ISCro1" FT repeat_region complement(991356..994054) FT /note="Insertion sequence ISCro1. 1 of 21 intact ISCro1 FT elements in CR chromosome, all have 30 bp inverted repeats FT which contain 12 mismatches, and are flanked by direct FT repeats of varying length. This element has 8 bp direct FT repeats" FT repeat_region 991356..991385 FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT CDS complement(991386..992957) FT /transl_table=11 FT /locus_tag="ROD_08991" FT /product="ISCro1 transposase C" FT /db_xref="InterPro:IPR004291" FT /db_xref="InterPro:IPR024463" FT /db_xref="InterPro:IPR024474" FT /db_xref="UniProtKB/TrEMBL:D2TR86" FT /protein_id="CBG87675.1" FT /translation="MDTSLAHENARLRALLQTQQDTIRQMAEYNRLLSQRVAAYASEIN FT RLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETLGEQYDPALPSAL FT RQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIETQR FT PKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQSEIYRRQGVEL FT SRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYV FT RDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYESGRITEAA FT CMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSAEQRLAARKARAASLMQ FT SLYDWIQTQMKTLSRHSDTAKAFAYLLKQWDSLNVYCSNGWMEIDNNIAENALRGVAVG FT RKNWLFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWK FT VDLSSQ" FT misc_feature complement(991950..992546) FT /locus_tag="ROD_08991" FT /note="HMMPfam hit to PF03050, Transposase, IS66, score FT 4.4e-129" FT /inference="protein motif:PFAM:PF03050" FT CDS complement(992977..993324) FT /transl_table=11 FT /locus_tag="ROD_09001" FT /product="ISCro1 transposase B" FT /db_xref="InterPro:IPR008878" FT /db_xref="UniProtKB/TrEMBL:D2TGY5" FT /protein_id="CBG87676.1" FT /translation="MISLPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFI FT FRGRRGDQIKVLWADSDGLCLFTKRLERGRFIWPVTRDGKVHLTPAQLSMLLEGINWKH FT PKRTERAGIRI" FT misc_feature complement(992983..993309) FT /locus_tag="ROD_09001" FT /note="HMMPfam hit to PF05717, Transposase (putative), IS66 FT Orf2 like, score 5.7e-70" FT /inference="protein motif:PFAM:PF05717" FT CDS complement(993324..994001) FT /transl_table=11 FT /locus_tag="ROD_09011" FT /product="ISCro1 transposase A" FT /db_xref="GOA:D2TGY6" FT /db_xref="InterPro:IPR002514" FT /db_xref="UniProtKB/TrEMBL:D2TGY6" FT /protein_id="CBG87677.1" FT /translation="MSIIFSGHYRMEYRTWITEALRLHFEEHLPRVVAGRRLGVPKSTV FT CSMFVRFRRAGLSWPLPAGMSEQELDACLYGQFSTVPVVRPESTVISETPVVKKRPRRP FT NFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQYRKGGLLPSGKNMPALLP FT VTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRLKGKLTPALLQTLIREIKG FT SSH" FT misc_feature complement(993441..993695) FT /locus_tag="ROD_09011" FT /note="HMMPfam hit to PF01527, Transposase IS3/IS911, score FT 2e-22" FT /inference="protein motif:PFAM:PF01527" FT misc_feature complement(993852..993917) FT /note="Predicted helix-turn-helix motif with score FT 1051.000, SD 2.77 at aa 29-50, sequence FT LPRVVAGRRLGVPKSTVCSMFV" FT repeat_region complement(994025..994054) FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT repeat_region complement(994055..994062) FT /note="8 bp direct repeat flanking ISCro1" FT CDS 994227..994652 FT /transl_table=11 FT /locus_tag="ROD_09021" FT /product="putative phage tail fibre assembly protein" FT /db_xref="InterPro:IPR003458" FT /db_xref="UniProtKB/TrEMBL:D2TR89" FT /protein_id="CBG87678.1" FT /translation="MNKIYFSQDPVGFYIEGVSAVPSNAIEVSADIYNEFAGVAWPDGK FT VLGADDSGYPTWIDAPPPSHDELIAQAEAEKQRLIDETNVWINGQQWPSKLALGRLSED FT EKAQFNEWLDYLDAVSAVDTSTAPDIEWPTPPEQPAS" FT misc_feature 994236..994637 FT /locus_tag="ROD_09021" FT /note="HMMPfam hit to PF02413, Phage tail assembly FT chaperone gp38, score 4.9e-36" FT /inference="protein motif:PFAM:PF02413" FT CDS complement(994624..995223) FT /transl_table=11 FT /locus_tag="ROD_09031" FT /product="putative phage tail fibre assembly protein" FT /db_xref="InterPro:IPR003458" FT /db_xref="UniProtKB/TrEMBL:D2TR90" FT /protein_id="CBG87679.1" FT /translation="MSDAILDKNNIATQAGNITVYNYDGVTREYISSSVEYLAMGVGIP FT ANSAVDEPPAKKKGKATCRNAAGDGWESVADHRGETVYRIENGEPVEITAPGDYPAGTT FT TLFPSTPYDEWDGEKWVTDTDAQHAADVAAAEHQKTALLAAAQDTISIWQTELQLGIIS FT DDDKASLISWLSYIKELQTVDTDASPDINWPVAPVA" FT misc_feature complement(994630..995049) FT /locus_tag="ROD_09031" FT /note="HMMPfam hit to PF02413, Phage tail assembly FT chaperone gp38, score 6.8e-43" FT /inference="protein motif:PFAM:PF02413" FT CDS complement(995223..996062) FT /transl_table=11 FT /locus_tag="ROD_09041" FT /product="putative phage tail fibre protein" FT /db_xref="InterPro:IPR011083" FT /db_xref="UniProtKB/TrEMBL:D2TR91" FT /protein_id="CBG87680.1" FT /translation="MANLPEPPQWEDGIYQIEVSDPVLGGPDGITNRPAKQLASRTLYL FT KQQVEQGVSDLADHIAADDPHTQYAPKESPTFTGTPTAPTPASSDNSKKLATTEFVARI FT ISALTETVSGKLSQEQNGADIPDPEAFVKNLGLGEGSALPVGVPVPWPSATPPEGWLKC FT NGATFSSSLYPKLGLAYPSGKLPDLRGEFIRGWDDGRGADNGRSLLSSQGDAFRSHSHN FT FDRSWGLENFDATAGYDVVTADINGKIVNQPTRSTVSVGGSETRPRNIAFNYIVRAA" FT misc_feature complement(995484..995627) FT /locus_tag="ROD_09041" FT /note="HMMPfam hit to PF07484, Phage Tail Collar, score FT 1.6e-20" FT /inference="protein motif:PFAM:PF07484" FT repeat_region complement(995645..995666) FT /note="22 bp inverted repeat of prophage CRP99 invertible FT tail fibre region" FT CDS complement(996065..996643) FT /transl_table=11 FT /locus_tag="ROD_09051" FT /product="putative phage tail protein" FT /db_xref="InterPro:IPR006521" FT /db_xref="UniProtKB/TrEMBL:D2TR92" FT /protein_id="CBG87681.1" FT /translation="MTEPLLLPPPLEGDISFRTLGRLAGRLDNIDLSVLMVYLVDIVDS FT SALPWLGEQFSLFGDGWELAESDDVRRTLIKSAIELHRYKGTPWSIREIIRRFGFGEVD FT LIEGTGQIGYDGKHSYNGLFVHGDAESWAVYRVILRQPITNDQAALLRQTLAAFAPARC FT HLASLEYQSVAIRYNNTVNYDGSYNHGSS" FT CDS complement(996636..997739) FT /transl_table=11 FT /locus_tag="ROD_09061" FT /product="putative phage baseplate protein" FT /db_xref="InterPro:IPR006949" FT /db_xref="InterPro:IPR014507" FT /db_xref="UniProtKB/TrEMBL:D2TR93" FT /protein_id="CBG87682.1" FT /translation="MALTEPDFIERDADKITAEMIAWYEKTTGKTLYPAQAERLLIDLW FT AYREMLVRVAAQETAKQNLVAFAREPMIDYLGELVGVYRLAAQPATTTLQFSVDEALAI FT DVLIPAGTRVSASDSIIFATDTDVVLKAGLLLVNTTATCTEPGAAGNGWQPAQVSQLLD FT EIDNVDLQVTNLAASAGGSEQEDNDRLRERIKLAPESFTNAGSRMAYRFHAMQAHPNIV FT DVAVLSPVPGTVELYPLLSTGLPDDSILTLVESFCSDEKVRPLTDTVRARTPMQVDYAI FT EANIMIYRDQDANSVKDAANSAIQNWVASRTAALGRDIVPSQIISVLSVAGVYQVELVT FT PVLRVVAENEWANCSGITLNMTGVSDD" FT misc_feature complement(996759..997631) FT /locus_tag="ROD_09061" FT /note="HMMPfam hit to PF04865, Phage baseplate assembly FT predicted J-like, score 3.5e-129" FT /inference="protein motif:PFAM:PF04865" FT CDS complement(997730..998077) FT /transl_table=11 FT /locus_tag="ROD_09071" FT /product="putative phage baseplate protein" FT /db_xref="GOA:D2TR94" FT /db_xref="InterPro:IPR007048" FT /db_xref="InterPro:IPR015801" FT /db_xref="UniProtKB/TrEMBL:D2TR94" FT /protein_id="CBG87683.1" FT /translation="MKTTSVFWQPALQAPGEIVRGLDDIWQAIQIILRTPRGSDPHRPE FT FGSNLHRYIDWPIERAIPHVVRESVDAIRRWEPRCQLMSVKPVVDGEHLTLRVSWKGSD FT GQARTQELLWR" FT misc_feature complement(997745..998032) FT /locus_tag="ROD_09071" FT /note="HMMPfam hit to PF04965, GPW/gp25, score 7.3e-27" FT /inference="protein motif:PFAM:PF04965" FT CDS complement(998133..998663) FT /transl_table=11 FT /locus_tag="ROD_09081" FT /product="putative phage tail spike protein" FT /db_xref="InterPro:IPR006531" FT /db_xref="InterPro:IPR013046" FT /db_xref="UniProtKB/TrEMBL:D2TR95" FT /protein_id="CBG87684.1" FT /translation="MTGVTRQVGTVSAIDADRVQARVRLPECDNMRTNWLSVLQRNTQD FT NKDYWLPDVGEQVEVLLDANGEDGVILGAVYSDVDTPPFSDKDVRGTRYADGAEFSYNR FT ATHTLTVRGGIERIVVEVAADISLTGKNIDLTAENTTINGNTTLNGDLEINGNAHAAGN FT ILADGQNSNHHSH" FT misc_feature complement(998331..998639) FT /locus_tag="ROD_09081" FT /note="HMMPfam hit to PF04717, Phage baseplate assembly FT protein V, score 3.9e-46" FT /inference="protein motif:PFAM:PF04717" FT CDS complement(998663..999832) FT /transl_table=11 FT /locus_tag="ROD_09091" FT /product="putative phage tail protein" FT /db_xref="UniProtKB/TrEMBL:D2TR96" FT /protein_id="CBG87685.1" FT /translation="MAEINSTAQAASSLTGVSDVLSPVFTLWYLQKNITTDIAPYVTRV FT TYSDNIKSESDTIEVELDDTDGRWMDKWYPGKGDTLTLKLGYSGEKLLSCGTFSLDEIE FT VSSPPSAVAIRGVATSVNNALRTKSSRGFENTTLAAIAGRIAKKHKLKLAGSIEAIKID FT RVTQYAETDVAFLRRLASEYGYAVKVVSDQLVFSHLATLRSQAPVRQLSPQDVASFSLR FT DTINRVYKSAKVKHQKSSSKKLIVYEADGGTSDSDKQAKGGKVTSADSLKVNSRVSDPD FT SARIKADSALARHNEYQQNGSLTLMGTPQLTAGNKIELAGFGQMSGQWLITMARHTFDR FT NGGYITELEVARGPVTQGKAKKGKKTGKTQTLTVYKPDGSTSTVIKEKK" FT misc_feature complement(998768..999772) FT /locus_tag="ROD_09091" FT /note="HMMPfam hit to PF05954, Phage late control D, score FT 2.7e-179" FT /inference="protein motif:PFAM:PF05954" FT CDS complement(999820..1000032) FT /transl_table=11 FT /locus_tag="ROD_09101" FT /product="putative phage tail protein" FT /db_xref="InterPro:IPR008861" FT /db_xref="UniProtKB/TrEMBL:D2TR97" FT /protein_id="CBG87686.1" FT /translation="MFLEHVTRDGERWDSLAWKYYGDPLGYPRIIAANPHVAITPVLPS FT GLLLLIPVIEAADATTEEDIAPWLR" FT misc_feature complement(999853..1000023) FT /locus_tag="ROD_09101" FT /note="HMMPfam hit to PF05489, Phage tail protein X, score FT 1.9e-27" FT /inference="protein motif:PFAM:PF05489" FT CDS complement(1000032..1000916) FT /transl_table=11 FT /locus_tag="ROD_09111" FT /product="conserved hypothetical prophage protein" FT /db_xref="InterPro:IPR009734" FT /db_xref="UniProtKB/TrEMBL:D2TR98" FT /protein_id="CBG87687.1" FT /translation="MFAVLGDIEFELITYWDGFEATFGVDYAEHPRIEGKPGLQFVGDK FT LDEIQISLVFHQHYCVPDVELARLRTAMKAHQALALVFGNGDYRGWFVITDVTATSEQT FT DSTGNVLAVNATVSLREYIGDPKNPLQPPAIRTQVPGAGTVSGAVPSPSGVAKYVRDGV FT NYAKQAQSVLQTTISAVRVAQKMKDNPTVALTRVPGLMSGLGNVSGALGQSVPAFNALA FT KSMPDAISLARATSEAATYVQQAQSSLSNVDSSNIAAALDAVSGQLNSAGTTFTRMSPG FT LSTMAARILARSV" FT misc_feature complement(1000125..1000172) FT /note="PS00012 Phosphopantetheine attachment site." FT /inference="protein motif:Prosite:PS00012" FT misc_feature complement(1000542..1000901) FT /locus_tag="ROD_09111" FT /note="HMMPfam hit to PF06995, Phage P2 GpU, score 1e-31" FT /inference="protein motif:PFAM:PF06995" FT CDS complement(1000916..1003384) FT /transl_table=11 FT /locus_tag="ROD_09121" FT /product="putative phage tail tape-measure protein" FT /note="predicted tail tape-measure based on size and FT predicted transmembrane helices" FT /db_xref="InterPro:IPR010090" FT /db_xref="UniProtKB/TrEMBL:D2TR99" FT /protein_id="CBG87688.1" FT /translation="MASNFSVGVVIGGMIGSTFRSAMSGTRRALDSLSNTSRRLQERQN FT TLTRATERYGQLGSSRMQRLNSDLLQVSRTMERVERQQRRLSAVSATSDALKANRMALY FT GQGAETYAIARTLGAPVMNSVRQYTSFESQLRDISITGDLDARQEQAIGTAIRQASLRV FT NQLQESLLGGVGQLVADGMNPEQAAKFAGLLGKAATATKADMTDLAKMTYAFSDALRIT FT DAKELEQAFGIAATGAKLGSFELKDMAKALPGMAKAFAARGIYGKEAITQIVASLEVGK FT GSGSAEEAVTNMSNWLAAMGRGDTIQKYAKAGVDYQGSMQNYVAQGFSQYESSLMIANR FT FIDGKGKAFLQQWKAAGSRGDQEGQQKLMESFGLAEVFTDIQTVNHLLSMRQGWDKYLS FT NKQEMNTPSAMSTLDKDAAKQNDTLEGRWRRTQIGFNDSAISIGESLRPALIQLGETFI FT PLMDSVGKWITANPQLVSGTIKVVGALLAFKMATIGLKLSINLLISPFVSVWKNIVLLQ FT SSWLRLTLALGEGGKLRWLVTGFSTVAKGARTLGSVLSGGLVRGIMLAGRAVLWIGRAL FT MMNPIGLTITAIAAAAYLIYRNWGAVSSWFKQRWADIKTAFNGGIAGISRLLINWSPVG FT LLYKTFAAALKYLGVDLPAKFTDFGGHLIDGLINGIKNKWESLKTTVTDMGDSVGGWFK FT EKLGIHSPSRVFMGFGDNIAQGAAIGLQRTTPLAALAGQRLAEEMTPDVPRLPPPEIMA FT AGYSGRGAGTAASGGASGGIQVNFNPQFYLSGKETSTPAGLTGALNMSVHELEKMLERL FT LAQQQRRRYS" FT misc_feature complement(join(1001471..1001539,1001600..1001668)) FT /locus_tag="ROD_09121" FT /note="2 probable transmembrane helices predicted for FT ROD09121 by TMHMM2.0 at aa 573-595 and 616-638" FT sig_peptide complement(1003319..1003384) FT /locus_tag="ROD_09121" FT /note="Signal peptide predicted for ROD09121 by SignalP 2.0 FT HMM (Signal peptide probability 0.831) with cleavage site FT probability 0.553 between residues 22 and 23" FT CDS complement(1003536..1003877) FT /transl_table=11 FT /locus_tag="ROD_09131" FT /product="conserved hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TRA0" FT /protein_id="CBG87689.1" FT /translation="MSQTQTEAEIFTLKYPFTTAAGNSIAQLTLNRLTVKDLKQIKKTH FT KNPTDWDEPLISRSTGLLPEDLDNMDLADYLELQDRFQKITGLGKKHDSADKGAGAAGE FT VVPVPAGGD" FT CDS complement(1004245..1004538) FT /transl_table=11 FT /locus_tag="ROD_09141" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TRA1" FT /protein_id="CBG87690.1" FT /translation="MMVPKVDRKTVDDLVASLNYQPHHFPGTTLTIAVALMPDGFMVSS FT GFSATAHPGLFDEETGRKLAIAKAQHNATEALWQFEGYKLKSQQTTESQGDR" FT CDS complement(1004541..1005062) FT /transl_table=11 FT /locus_tag="ROD_09151" FT /product="putative phage tail tube protein" FT /db_xref="InterPro:IPR006498" FT /db_xref="UniProtKB/TrEMBL:D2TRA2" FT /protein_id="CBG87691.1" FT /translation="MAKIEINRITNANIYLDGANLLGRAEEVKLPDVSMTMQEHKALGM FT VGKVELPAGFDKLEGEIKWNSFYRDAMLSAANPYKSLALQCRSSVQRYSSQGLIDEIPL FT VTFLTIMFKKNPLGSFKQHENAEFSSSFTCTYIKQVLDGEELLELDYLANIFRVGGVDQ FT LTDFRINIGG" FT misc_feature complement(1004544..1005050) FT /locus_tag="ROD_09151" FT /note="HMMPfam hit to PF04985, Phage major tail tube FT protein, score 2.8e-09" FT /inference="protein motif:PFAM:PF04985" FT CDS complement(1005062..1006489) FT /transl_table=11 FT /locus_tag="ROD_09161" FT /product="putative phage tail sheath protein" FT /db_xref="InterPro:IPR007067" FT /db_xref="UniProtKB/TrEMBL:D2TRA3" FT /protein_id="CBG87692.1" FT /translation="MAANYLHGVETIEVENGARPVKTVKSAVIGLIGTAPMGDVNTLVQ FT CLSEKDAAAFGSQLTGFTIPQALDAIYDHGAGTVLVINVLDPAVHKTAVADEDVTFDKA FT TGKAQLANPVVAQLVLKPDSDGQPYVEGQDYSLDAQTGAITNLGKSIAADATVKASYNY FT ADPTKVTPADIIGTVNAAGNRTGMKLLNDSFNLFGYFAKILIAPVFCTQNSVSVELIAM FT AEKLGAVTYIDAPIGTTFAQALAGRGPEGTINFNTSSDRARLCYPHVKVYDAATNSERL FT EPLSQRAAGLRAKVDLDKGYWWSSSNQEILGITGVERQLSAMIDDPQSEVNLLNEQGIT FT TVFSSYGSGLRLWGNRMAAWPTVTHMRNFENVRRTGDVINESLRYFSQQYIDQPITQAL FT IDALTESVNAYGRKLIGDGALLGFSCWFDPARNEETELAAGHLLLSYKYTPPPPLERLT FT FETEITSEYLLTLKGNS" FT misc_feature complement(1005080..1006483) FT /locus_tag="ROD_09161" FT /note="HMMPfam hit to PF04984, Phage tail sheath protein, FT score 5.9e-189" FT /inference="protein motif:PFAM:PF04984" FT misc_feature complement(1006040..1006063) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(1006479..1006733) FT /transl_table=11 FT /locus_tag="ROD_09171" FT /product="conserved hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TRA4" FT /protein_id="CBG87693.1" FT /translation="MMKQYRYSGPASGVTLSDGTEILLWPGKNVSLPEEHDYVKVLVAL FT KHLTPVSEETKPASTPVVQSPKRRNGGDSDVKTEDSHGS" FT CDS complement(1006730..1007194) FT /transl_table=11 FT /locus_tag="ROD_09181" FT /product="conserved hypothetical prophage protein" FT /db_xref="InterPro:IPR018602" FT /db_xref="UniProtKB/TrEMBL:D2TRA5" FT /protein_id="CBG87694.1" FT /translation="MNVLPVIDAVVARLREKLPSLAVEYFPEKPAEYRLNHSVGALLVS FT YAGSRFDKPDDIGAVLQPQTIQLCVTVVFRQLNGKRGAIDVLDAVRRILGGYTPPNCRR FT RIWLTREVFIGEVKGLWQYALDFATESVFIEDSDLPSGPLLTEVNYEESE" FT CDS complement(1007194..1007640) FT /transl_table=11 FT /locus_tag="ROD_09191" FT /product="conserved hypothetical prophage protein" FT /db_xref="InterPro:IPR009752" FT /db_xref="UniProtKB/TrEMBL:D2TRA6" FT /protein_id="CBG87695.1" FT /translation="MYCTLADLLEQVPERTLIELTNESVGFDESPPVNAAVVESCIRYA FT DELIDAHLRGRYTLPLAEVPTVLRDIAITLARYRLYARRPEGDLPDTVKDDNKEARRQL FT EAIRDGKLTLGLQSTQKDVPESGEIRARARRPTFGGRDGLLEKY" FT misc_feature complement(1007212..1007637) FT /locus_tag="ROD_09191" FT /note="HMMPfam hit to PF07030, Protein of unknown function FT DUF1320, score 3.6e-63" FT /inference="protein motif:PFAM:PF07030" FT CDS complement(1007642..1007998) FT /transl_table=11 FT /locus_tag="ROD_09201" FT /product="conserved hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TRA7" FT /protein_id="CBG87696.1" FT /translation="MGTTQQVILTTTVTASAALTQQRFVGADNAPCQAGAVALGVAEVD FT AAAGDLTPVNVLGIVAVEVGAAIAKGQIVQSDANACAVPQTAATEDTPAGVSAGIALDE FT ALAAGDVIRILRGV" FT CDS complement(1008011..1008964) FT /transl_table=11 FT /locus_tag="ROD_09211" FT /product="conserved hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TRA8" FT /protein_id="CBG87697.1" FT /translation="MSDYLKGKRVVDPVLTSIARGYKNAAFIGEKIFPIVQTDKEGVSV FT PTFGKSAFVEYDTERAVGADSNVLVREKTGKLDLVLNEHDLAAPVDYREQAESMFNEEA FT KAIRRATSGVNLRRELYAARLAQDKSVYLAANVKALAAAERWVGGKGDPIGIIEGGIDA FT VRKATGLRPNLMTIGASVMSVLKFHPAIQAAIGANERKRITLEILKDLFQMDDVVVGEP FT VSLTSMKDAQNKDKVPTDIWADNLMLHYVSKPQPGTDSADENEPSFGYTLRRKGMPVAD FT KYDGVGGKVKYCRYTDIYKVAVVGGDAGYLVTNIIK" FT CDS complement(1008978..1010078) FT /transl_table=11 FT /locus_tag="ROD_09221" FT /product="conserved hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TRA9" FT /protein_id="CBG87698.1" FT /translation="MSAIHIFKAGTHTDMHGKKLPFTQSDLAACVKAYDPTIHEAPLVI FT GHPKTEDPAWGWVKSLSLNGGDLLAEPDQLDPQFAELVDNGRFKKVSASFYLPDSPNNP FT KPGTLYLRHVGFLGAQPPSIKGLKQVSFGEQEEGVVEFADWNDVTNATLWGRLRDFLIG FT QFGLDETEKVIPSWQVESLREKAYRDTDKDEPAFSEDNPNPQQEKSTMTEEEIKALQAE FT NARLKAEATQRAEQEAKAKQDKLHAENVSFAEKLVGDGRLAPKAKSVVVAILDAVSAGD FT KPVEFAEGDIRTPLATAFRTLLDSTEPVLNFSEHATKDRADVPAVKSAPAEFAESDPER FT LALHQKAQELSKKEGISYDAAVARCL" FT CDS complement(1010284..1010742) FT /transl_table=11 FT /locus_tag="ROD_09231" FT /product="conserved hypothetical prophage protein" FT /db_xref="InterPro:IPR006522" FT /db_xref="UniProtKB/TrEMBL:D2TRB0" FT /protein_id="CBG87699.1" FT /translation="MASDNLVNITINDKSLRQSLNALELAATDLTPAMRKIAGTLLTET FT QLNFMDEGRPAWTPSLAAEERDGQTLQLTGRLMGSVSTNYDDRQAAVGTNVVYGAIHQF FT GGKTGRNESVELEARPYLPITGDGELQPEAEKSVLDTVVRHLESAARR" FT misc_feature complement(1010302..1010712) FT /locus_tag="ROD_09231" FT /note="HMMPfam hit to PF05069, Phage virion morphogenesis FT (putative tail completion) protein, score 1.6e-26" FT /inference="protein motif:PFAM:PF05069" FT misc_feature complement(1010362..1010379) FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT /inference="protein motif:Prosite:PS00343" FT CDS complement(1010745..1011566) FT /transl_table=11 FT /locus_tag="ROD_09241" FT /product="putative phage head assembly protein" FT /db_xref="InterPro:IPR006528" FT /db_xref="UniProtKB/TrEMBL:D2TRB1" FT /protein_id="CBG87700.1" FT /translation="MSVTTTELAYCMTLPPKRAIAYLRSKGYKITWDWEEMWQDAHARA FT FTVAKVTRLDILEDIRGALQQAVDEGKTGRWFRQELEPELQRKGWWGPRDTTDPVTGEP FT VTIQQGSPWRLDTIFRTNMSVLYSAGRWAEQMENVDDRPYWMYTGINDSHTRKSHLALH FT GLVLRYDDPFWQAFYPPNGWRCRCGVIALSAAEVHARGLKVVNSSNAMGWELKLVSEKT FT GEMQNVATFNTGTTKVATDVGWSYAPGAAYRPDLARYQGTLKPLAQQELRG" FT misc_feature complement(1010997..1011395) FT /locus_tag="ROD_09241" FT /note="HMMPfam hit to PF04233, Phage putative head FT morphogenesis protein, SPP1 gp7, score 8.4e-45" FT /inference="protein motif:PFAM:PF04233" FT CDS complement(1011547..1013043) FT /transl_table=11 FT /locus_tag="ROD_09251" FT /product="putative phage portal protein" FT /db_xref="InterPro:IPR009279" FT /db_xref="UniProtKB/TrEMBL:D2TRB2" FT /protein_id="CBG87701.1" FT /translation="MARGLWVSPSEFVKFAEPTKTLTEQIASRSRSIDFFGLGMYLPNP FT DPILKSQGRDIRIYRELRTDPLVGGCIRRRKAAVKSLERGLERGHAPARVFSFIRDMLD FT DLDISRIIGEMTDAVLYGYQPCEIMWGRSVKSWAIADIVGKPPEWFQFDNDNLLRFRAK FT DAGLEGEPVPLNKFVVPRQDATYDNPYGFPDLSMCFWPVTFKKGGMKFWVRFAEKYGSP FT WVIGKHPRGTAQGEIDLLLDSMEAMVEDAVAAIPDDSSIEIKEAAGKADSSDIYQNLIT FT LARSEISIALLGQNQTTEANSNRASAQAGLEVTDDIRDADADIVESAVNQAIKMAVSLN FT FGDVASPVWKMWEQGTVDDTQATRDEKLSRAGVVFTPQYFKREYQLQDGDIDETPPSER FT QNNGLPLSFAEAVDADIQAQQALDDALDILMNGGSLNGTLEPVLAPLFKRVENGVNPSE FT LLGELAELYPQMNAEDLQERLARVIFVASLWGRLHERNHD" FT misc_feature complement(1011562..1013043) FT /locus_tag="ROD_09251" FT /note="HMMPfam hit to PF06074, Protein of unknown function FT DUF935, score 3.4e-230" FT /inference="protein motif:PFAM:PF06074" FT CDS complement(1013043..1014566) FT /transl_table=11 FT /locus_tag="ROD_09261" FT /product="putative phage terminase large subunit" FT /db_xref="InterPro:IPR004921" FT /db_xref="InterPro:IPR012036" FT /db_xref="UniProtKB/TrEMBL:D2TRB3" FT /protein_id="CBG87702.1" FT /translation="MSQLAPVIPDTSGYDAPPVLLPYQQRWVADTSPFKVMEKSRRTGI FT TWAEASDNVLTAASSAAAGGMNVYYIAYNQDMTVEYIQACAMWARAFNYAASEIEEGFW FT EEEEEDKHIKTYTIKFPDSSFRVVALSSRPSNLRGRQGVIVIDEAAFHEQLKELLKAAM FT AMLIWGGKVRVISTHDGDDNEFNTTITDIRAGRQGGSVQRITFKEAVAEGLFHRVCLRT FT GQEWTEAAEQAWMASVYKFYGAGASEELDCIPANGSGAWLSRALIESRMSADTPVLRLT FT CPEGYELLPDEVRWSETQDWLDTHLKPLLEALPADARSFLGRDFGRSGDLSVDYPLLQE FT KNLVRRVPFVMELRNVPFKQQEQITWYLMDGLPGLLGAAFDARGNGAYLAEYAMQRYGS FT SRVKQVMPTEGWYREHMPPVKAALEDGNLVDLPKDEDTLDDLRAVQVVNGVPRVPEQRS FT KAKSDGGKRHGDSAIAVALAWFASREINKGPVKASSRRRRQSARMLEGY" FT CDS complement(1014563..1015108) FT /transl_table=11 FT /locus_tag="ROD_09271" FT /product="conserved hypothetical prophage protein" FT /db_xref="InterPro:IPR021874" FT /db_xref="UniProtKB/TrEMBL:D2TRB4" FT /protein_id="CBG87703.1" FT /translation="MARRSTIEKLPEDVRRWLERALTESGFSGYTELESLLREQGYVIS FT KSAIHRYGQKIERRYGAIRAATEAARMLTEGAADDQDARSEAVIALIQTELFESIVQLQ FT EAEEGDVDPKERVALLSKVAKNVATLSRASVNLKKFQTEVRARAQQAASNAEKIARKGG FT LSADAVQALRREILGIAT" FT CDS complement(1015108..1015419) FT /transl_table=11 FT /locus_tag="ROD_09281" FT /product="conserved hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TRB5" FT /protein_id="CBG87704.1" FT /translation="MVDIARVRRESLRWSLLVALNKTRPYTASETLLLDVALAIYPDTT FT PLELRRELDYLSDRRMVDLEKKPSGDWFADLTRLGVDLVEYTVECGPGIARPEKYWSE" FT CDS complement(1015412..1015744) FT /transl_table=11 FT /locus_tag="ROD_09291" FT /product="putative prophage membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TRB6" FT /protein_id="CBG87705.1" FT /translation="MTLQVEFWTVVGFLITFMSFVGGIAKWLFSKAEERQAARFASLEQ FT SLQQSTSNWGELEKEFMRFRAELPLNYVRREDYIRGQTVIEAKLDALYNKLEVVQGYRH FT TGGHNG" FT misc_feature complement(1015658..1015726) FT /locus_tag="ROD_09291" FT /note="1 probable transmembrane helix predicted for FT ROD09291 by TMHMM2.0 at aa 7-29" FT CDS complement(1015741..1016394) FT /transl_table=11 FT /locus_tag="ROD_09301" FT /product="putative prophage membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TRB7" FT /protein_id="CBG87706.1" FT /translation="MWTSLLKNLPWRSLLLAVVINAFLIGLYYLGYRSGHENASRDGDK FT AISQLQSAFDTYKAEQATRENAALKAWAQRYQEQVATGHQAEAGYLEQIARLESRNQQL FT QRQVNDVTQRWIDEKGKSHPIECVFTRGFVRQYNAALGYDDASVDTGHSDTTAAAGTGT FT GAAPGQPETTGAWLRDSGVTQRDVLANIIDNAKQCRIWRSQINRLLDEREGLQK" FT misc_feature complement(1015765..1015830) FT /note="Predicted helix-turn-helix motif with score FT 1142.000, SD 3.08 at aa 189-210, sequence FT ANIIDNAKQCRIWRSQINRLLD" FT misc_feature complement(1016299..1016367) FT /locus_tag="ROD_09301" FT /note="1 probable transmembrane helix predicted for FT ROD09301 by TMHMM2.0 at aa 10-32" FT CDS complement(1016384..1017121) FT /transl_table=11 FT /locus_tag="ROD_09311" FT /product="putative phage lytic transglycosylase" FT /db_xref="InterPro:IPR008258" FT /db_xref="InterPro:IPR023346" FT /db_xref="UniProtKB/TrEMBL:D2TRB8" FT /protein_id="CBG87707.1" FT /translation="MMTLYMYWPQVIWAVMVLLGLGIELARHGQPRTGKHSFWWQLSAT FT ALVAGLLWSGGFFRQASAAQPPQAALQYRDDVIRNARLEWGLSAPVADFAAQLHQESGW FT RPDAISPVGAQGMAQFMPATADWISQLVPGLNSREPFNPAWAIRALVSYDRWLWQRVSA FT ADNCERMAMTMSGYNGGLGWVQRDKRLATQQGLDGTRWFGHVATVNAGRSAANWRENRH FT YPQRILRELAPRYLTWGGGSCVD" FT misc_feature complement(1016522..1016896) FT /locus_tag="ROD_09311" FT /note="HMMPfam hit to PF01464, Lytic transglycosylase-like, FT catalytic, score 1e-06" FT /inference="protein motif:PFAM:PF01464" FT misc_feature complement(join(1016951..1017010,1017044..1017112)) FT /locus_tag="ROD_09311" FT /note="2 probable transmembrane helices predicted for FT ROD09311 by TMHMM2.0 at aa 4-26 and 38-57" FT CDS complement(1017121..1017471) FT /transl_table=11 FT /locus_tag="ROD_09321" FT /product="putative prophage exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TRB9" FT /protein_id="CBG87708.1" FT /translation="MKTIKKFIPPVKKPRLSGWLLTAVLLLGTIGLVSPQQLPVVVYKL FT SLITLAAVLGYWLDRSLFPKARPGQYLKHDEKLMASGRFPVQTGLHLVFSAALIRRALI FT VAAVCLAVATGL" FT misc_feature complement(join(1017130..1017198,1017301..1017360, FT 1017373..1017426)) FT /locus_tag="ROD_09321" FT /note="3 probable transmembrane helices predicted for FT ROD09321 by TMHMM2.0 at aa 16-33, 38-57 and 92-114" FT sig_peptide complement(1017373..1017471) FT /locus_tag="ROD_09321" FT /note="Signal peptide predicted for ROD09321 by SignalP 2.0 FT HMM (Signal peptide probability 0.965) with cleavage site FT probability 0.810 between residues 33 and 34" FT CDS 1017721..1018491 FT /transl_table=11 FT /gene="dam" FT /locus_tag="ROD_09331" FT /product="putative prophage DNA adenine methylase" FT /db_xref="GOA:D2TRC0" FT /db_xref="InterPro:IPR012263" FT /db_xref="InterPro:IPR012327" FT /db_xref="InterPro:IPR023095" FT /db_xref="UniProtKB/TrEMBL:D2TRC0" FT /protein_id="CBG87709.1" FT /translation="MKEQSLPIVPWIGGKRRLAKHILPLFPAHTCYVEPFCGAAALYFL FT KAPSKTEVINDINGELVNLYRVVKHHLEEFVRQFKWALVSRQIYKWLQDTPEETLTDIQ FT RAARFYYLQKQAFGGKVADHTFGTSTTSAPRFNLLRIEEELSMAHLRLSRTLIEHLDWS FT QCIERYDRPHTLFYCDPPYWGTEGYGVDFPPGNYIRMAALARSIKGKMVISVNDIPEMR FT QAFNGLNIQTVDISYNLKVTGKATLRKELVICNF" FT misc_feature 1017751..1018437 FT /gene="dam" FT /locus_tag="ROD_09331" FT /note="HMMPfam hit to PF02086, D12 class N6 FT adenine-specific DNA methyltransferase, score 9.7e-20" FT /inference="protein motif:PFAM:PF02086" FT CDS complement(1018546..1019079) FT /transl_table=11 FT /locus_tag="ROD_09341" FT /product="putative prophage lipoprotein" FT /db_xref="UniProtKB/TrEMBL:D2TRC1" FT /protein_id="CBG87710.1" FT /translation="MTMRKLFLPLVFVLSGCGDNVDPTDISTPAKEQQVFSVETNNPVV FT KRELPFIRQQLPGLDKYAGSFEKFEVSEDSVRSVTTVQFHIKDENNIPSDYMASGHNCF FT LFISNSVHEVKISKSACQAVFFDKTDVPGGDLTVKLDKEHVPMTADGKAPRTGCLKVFS FT PEPDNDYWSCPRQG" FT misc_feature complement(1019029..1019061) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1019115..1019525) FT /transl_table=11 FT /gene="cI" FT /locus_tag="ROD_09351" FT /product="putative phage repressor protein" FT /db_xref="GOA:D2TRC2" FT /db_xref="InterPro:IPR010744" FT /db_xref="InterPro:IPR010982" FT /db_xref="UniProtKB/TrEMBL:D2TRC2" FT /protein_id="CBG87711.1" FT /translation="MNKKAVDAVLLRLMSLFQVDNDSELARALNVNRQTLASWRKRDSV FT PYSICVNLAEERGVSLDWLLAGKGDDTSKEAEPATQNLSQADLKMLELLNQLDPEVRRD FT LMRGAEEKQRVIEMERQLKELSAKLERLKNTG" FT misc_feature complement(1019310..1019504) FT /gene="cI" FT /locus_tag="ROD_09351" FT /note="HMMPfam hit to PF07022, Bacteriophage CI repressor, FT score 4.1e-17" FT /inference="protein motif:PFAM:PF07022" FT misc_feature complement(1019403..1019468) FT /note="Predicted helix-turn-helix motif with score FT 1544.000, SD 4.45 at aa 20-41, sequence FT DNDSELARALNVNRQTLASWRK" FT CDS 1019615..1019839 FT /transl_table=11 FT /locus_tag="ROD_09361" FT /product="hypothetical prophage protein" FT /db_xref="GOA:D2TRC3" FT /db_xref="InterPro:IPR010982" FT /db_xref="UniProtKB/TrEMBL:D2TRC3" FT /protein_id="CBG87712.1" FT /translation="MNKQQVRARLIERGSSLRQFALNAGYEPRTVTQAVSRWAGKSELP FT RGRLTYRILRDLSVVIGKEVTPGILKEAS" FT CDS 1019836..1020141 FT /transl_table=11 FT /locus_tag="ROD_09371" FT /product="putative prophage DNA-binding protein" FT /db_xref="GOA:D2TRC4" FT /db_xref="InterPro:IPR005471" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TRC4" FT /protein_id="CBG87713.1" FT /translation="MSKPNTSSSGARILRVLKALRGHALNGVSNGELASALGESPANIN FT RALNTLIEEGLAMKLDNGRFAPGVQLLQIAMAHSNEMARAQDRINEINQRVMAGSR" FT misc_feature 1019860..1020081 FT /locus_tag="ROD_09371" FT /note="HMMPfam hit to PF09339, Transcriptional regulator FT IclR, N-terminal, score 1.4e-08" FT /inference="protein motif:PFAM:PF09339" FT misc_feature 1019917..1019982 FT /note="Predicted helix-turn-helix motif with score FT 1299.000, SD 3.61 at aa 28-49, sequence FT VSNGELASALGESPANINRALN" FT CDS 1020151..1021065 FT /transl_table=11 FT /locus_tag="ROD_09381" FT /product="conserved hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TRC5" FT /protein_id="CBG87714.1" FT /translation="MGRTKSQPAEFVEDAPLSDGLNVSLNAMTEHRLEIMQQFGEGLPY FT ERDRIVHETRFYMAQSAEAMLEAGKRLIILKENEPHGDFINILENDLGLEPRVARRMMQ FT ASVKFLGNSDEPQKRTALTVLGKTKLYELMVLDDEELDALADGGTVAGATLDDIDRMTS FT RELKAALREARETNAAQQRVLADKNEKIDALSTKLEKKSRIKPPKPDEEVKKIRAEVTA FT IATEAEAAVIVHLSNAFSTLSAYCDEHQLDIPKDFMSGLVCQVERGIHALRETFDLEAA FT PTGNAAPSWLTDPEPQITHNAGE" FT misc_feature 1020511..1020534 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 1021069..1022838 FT /transl_table=11 FT /locus_tag="ROD_09391" FT /product="putative phage transposase" FT /db_xref="GOA:D2TRC6" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:D2TRC6" FT /protein_id="CBG87715.1" FT /translation="MSAALTERLVSVARAARDAGHGKRGAIYNAACAELGISRATLLRK FT LKEVSVTDKRKKRADAGRSALNRDEAALISATLREATRKNGKRLYSIADAVETLRSNGF FT ITAGRTDETTGEFFPLSEDAISRALRNYGLHPEQLDAPTPSCEVASLHPNHVWEIDASL FT CTLYYLSNGHKGLQVMDSAKFYKNKPANIARIASDRVWSYEITDHTSGWIYVEYVMGAE FT SGENLCSVLINAMQERGGADVLHGVPKILYLDPGSANTAGMTKNMCRSLGIDLIAHKPH FT NARATGQVEKARDIIERKLEPGLKFQPVHSLDELNALAVKWRSHFNATAVHSRHGKTRT FT DIWLKITAEQLKKAPSVEVCRELAVAAPESRKVTSKLRVPFRGTEFDVSTVPGVLVGEK FT LMITRNPWRSDVAQVVLTGEDGHETFFLVEEVRKNEFGFAESAAVFGQNYKALPETPAQ FT TAAKEIEELVTGTDNAADAAAARKAKALPFGGRLDPYKHIDDTTLPTYMPKRGQASDVR FT GPRIEQRPLTHVEAAKALREKFSASGHTWTPEHYRQLTAQYPDGVPEAALDDVMTALAG FT PARNGIISIVNGN" FT misc_feature 1021513..1022100 FT /locus_tag="ROD_09391" FT /note="HMMPfam hit to PF00665, Integrase, catalytic core, FT score 3.5e-08" FT /inference="protein motif:PFAM:PF00665" FT CDS 1022849..1024006 FT /transl_table=11 FT /locus_tag="ROD_09401" FT /product="putative prophage DNA-binding protein" FT /db_xref="GOA:D2TRC7" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:D2TRC7" FT /protein_id="CBG87716.1" FT /translation="MLVLKQQLKEARIPQAVVARAVAVSEATLAQIVNHNEWPRTSPED FT VRQRLASFLASKGIDTAKSFDAAQGAATPRTAGTTNLSEEENMLLKKQVLFPATKKAFG FT LFRDPFADDAMQGADDVFTTPDIRYVREALYQTARHGGFMAVIGESGAGKSTLRRDLIE FT RINRENAPVIVIEPYIIAMEDNDVKGKTLKAAAIAEAIISTIAPLENIKRSQDARFRQL FT HRVLKDSCQAGFSHVLVIEEAHSLPIPTLKHLKRFFELESGFKKLLSIVLIGQPELATK FT LSERNMEVREVVQRCEVVELLPLDNSLEEFLTFKLQRVGKQLADIMDASAVDAIRARLS FT NPGSSRKNLVSLLYPLAVSNLVIAAMNLAAEIGVPQVNADVVKGV" FT misc_feature 1022885..1022950 FT /note="Predicted helix-turn-helix motif with score FT 1392.000, SD 3.93 at aa 13-34, sequence FT IPQAVVARAVAVSEATLAQIVN" FT misc_feature 1023290..1023313 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 1024009..1024278 FT /transl_table=11 FT /locus_tag="ROD_09411" FT /product="putative prophage exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TRC8" FT /protein_id="CBG87717.1" FT /translation="MKSIININQQMSNVCSAIAALNAMNTTVQSVMIAGSKPVIRIARN FT GYCARLLEQGKASYTHMGHDGSGRFKQGVFELHGCRITWSESLH" FT sig_peptide 1024009..1024098 FT /locus_tag="ROD_09411" FT /note="Signal peptide predicted for ROD09411 by SignalP 2.0 FT HMM (Signal peptide probability 0.709) with cleavage site FT probability 0.345 between residues 30 and 31" FT CDS 1024296..1024907 FT /transl_table=11 FT /locus_tag="ROD_09421" FT /product="conserved hypothetical prophage protein" FT /db_xref="InterPro:IPR021505" FT /db_xref="UniProtKB/TrEMBL:D2TRC9" FT /protein_id="CBG87718.1" FT /translation="MSEVNKEDYMKDRKGRLVPVDQVSDYDLAMDTFVKEQVAAAKAKR FT DELAYFKRRAFDECYAWLDLVAEKYGRTRGGAKGNVTFSSFDGSQQITIRVQETLTFGP FT ELQIAKDLIDECVTEWSEGANANLRAIISDAFQVDKEGQLNTGRILSLRRVKIQDERWN FT KAMEAISESLQVAMSKTYINFREKDKNGKLVNIPLDIAAI" FT CDS 1024997..1025443 FT /transl_table=11 FT /locus_tag="ROD_09431" FT /product="hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TRD0" FT /protein_id="CBG87719.1" FT /translation="MFQLQERYHHAEVQRSQHHHLRETTCPGCPHHAGMSALQPALLLR FT SSGNGIYPLRGQAMITPKEAEKRTREIVAEYISVCGCENPNHIRQVLIKLISMASHAIV FT ATNGLDQAIYALHATSDHLRKLPPLYELEITEEGHVRIIGVSRH" FT CDS 1025458..1025754 FT /transl_table=11 FT /locus_tag="ROD_09432" FT /product="conserved hypothetical prophage protein" FT /db_xref="UniProtKB/TrEMBL:D2TRD1" FT /protein_id="CBG87720.1" FT /translation="MKGMKLYNRSTIYHLALKTFGPEAQALKLMEESAELAAAAARNMN FT GLGNEVDLAGEMADVEIMIEQFRINGMDKLIDFQKQKKLERLAERLGVTYAAE" FT CDS 1025741..1026436 FT /transl_table=11 FT /locus_tag="ROD_09441" FT /product="conserved hypothetical prophage protein" FT /db_xref="InterPro:IPR016868" FT /db_xref="InterPro:IPR024498" FT /db_xref="UniProtKB/TrEMBL:D2TRD2" FT /protein_id="CBG87721.1" FT /translation="MQQNNEKVLEKLKKLLALAKSDNPHEAALALQRAQKLMLAYNITQ FT DDLALSDIDESISGYWAAGSVNPPRYMLGLLGIIQDAFGVKSIIHSGFKPSVGFYGNKD FT RVELASYTWEVLARQLVSARKNYIRQQNKRIKNTTKTSRGDKFAEGWVLAVSREVHLFA FT MSREEQELAKLWLSQKYPDTETTTGRKTGKSRDSDMSRHLGYKEGKNVRLHQPVNGQER FT QKLGAAYDG" FT CDS 1026426..1026641 FT /transl_table=11 FT /locus_tag="ROD_09442" FT /product="putative prophage membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TRD3" FT /protein_id="CBG87722.1" FT /translation="MMAETIVCGLFWYCFVGWCTAELHRHTGFYSRYSGAWCWISWAVI FT FLCWPVALPLYVDYIGGTGKRSGDNE" FT misc_feature 1026528..1026596 FT /locus_tag="ROD_09442" FT /note="1 probable transmembrane helix predicted for FT ROD09442 by TMHMM2.0 at aa 35-57" FT CDS 1026634..1027059 FT /transl_table=11 FT /locus_tag="ROD_09451" FT /product="putative prophage regulatory protein" FT /db_xref="InterPro:IPR009363" FT /db_xref="UniProtKB/TrEMBL:D2TRD4" FT /protein_id="CBG87723.1" FT /translation="MNKQRLIQLIHIARNDLQMDEDTYRQMLQGLTGKASTKGMDMTQL FT NRVLESMKKKGFRIKPAGKAKSGIPLDSHPQSKKIRALWLEMADAGVIRDRSEKALTLW FT VKRETGINALRWLNAEQASSVIEKLKKWQRRATGAKR" FT misc_feature 1026637..1027050 FT /locus_tag="ROD_09451" FT /note="HMMPfam hit to PF06252, Protein of unknown function FT DUF1018, score 2.3e-74" FT /inference="protein motif:PFAM:PF06252" FT CDS 1027056..1027445 FT /transl_table=11 FT /locus_tag="ROD_09461" FT /product="putative prophage transcriptional regulator" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR014875" FT /db_xref="UniProtKB/TrEMBL:D2TRD5" FT /protein_id="CBG87724.1" FT /translation="MSDMSQFRSKGPELLVELAQHTSETVREIIDIDPAVSDQIGQAVA FT NRMMQVWGGQNVYFPMGMVWKVSQRDREIFQEFDGRNHHELARKYGVSLQWIYSVVKRV FT KKEELDRMQGKLFDGEPDADTGKKG" FT misc_feature 1027080..1027403 FT /locus_tag="ROD_09461" FT /note="HMMPfam hit to PF08765, Mor transcription activator, FT score 9.9e-62" FT /inference="protein motif:PFAM:PF08765" FT misc_feature 1027296..1027361 FT /note="Predicted helix-turn-helix motif with score FT 1626.000, SD 4.72 at aa 81-102, sequence FT RNHHELARKYGVSLQWIYSVVK" FT misc_feature complement(1029649..1029702) FT /locus_tag="ROD_08971" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 55" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(1029952..1030005) FT /locus_tag="ROD_08971" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 38" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(1030291..1030344) FT /locus_tag="ROD_08971" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 38" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(1030618..1030671) FT /locus_tag="ROD_08971" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 47" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(1030969..1031022) FT /locus_tag="ROD_08971" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 38" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(1031320..1031373) FT /locus_tag="ROD_08971" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 38" FT /inference="protein motif:PFAM:PF00132" FT misc_feature complement(1031671..1031724) FT /locus_tag="ROD_08971" FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide repeat, score 38" FT /inference="protein motif:PFAM:PF00132" FT CDS complement(1033930..1034595) FT /transl_table=11 FT /locus_tag="ROD_09471" FT /product="LuxR-family transcriptional regulator" FT /db_xref="GOA:D2TRD6" FT /db_xref="InterPro:IPR000792" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR016032" FT /db_xref="UniProtKB/TrEMBL:D2TRD6" FT /protein_id="CBG87725.1" FT /translation="MHNHKNIHILLRNNNYFFVYGLVTMMKTILGPDKNIIVSGDYSIS FT GVRRADIIIMSSTPALPCLCLPNFRFRQPHSLVIVFNDRHSNFRSHTCAACNSGVLLLN FT HKKPIGLIRTRLEQTIKAVSMEDISCTPGDYLSCRHCRLSKKQLQVIQYMRQGYNVQRI FT AKLMNVSAKTIHAHKYRIMQRIGTKGNVRLYNFINSIGQDESFADIGQIEKAVNASSV" FT misc_feature complement(1034005..1034178) FT /locus_tag="ROD_09471" FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT protein, LuxR, score 8.5e-13" FT /inference="protein motif:PFAM:PF00196" FT misc_feature complement(1034044..1034127) FT /note="PS00622 Bacterial regulatory proteins, luxR family FT signature." FT /inference="protein motif:Prosite:PS00622" FT misc_feature complement(1034059..1034124) FT /note="Predicted helix-turn-helix motif with score FT 1106.000, SD 2.95 at aa 158-179, sequence FT YNVQRIAKLMNVSAKTIHAHKY" FT CDS complement(1034624..1035319) FT /transl_table=11 FT /locus_tag="ROD_09481" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TRD7" FT /protein_id="CBG87726.1" FT /translation="MDGDLVAWVIFYYSLREDGKYGAQRVHRVIVNHDKIITSLSEHST FT LAQPDSIIRGKRRYNLSHEHSRRIFFILEGDFLLKMRVKNEEKMLNILSAPYVVDVTPA FT LDALPLYLERVDYGRVHSLSYDRFWQLVREKDLLDDTMSILSGHYSDLLNYITTSKSSS FT YEQVISLIERWQRLPSHLKKRFSALYLIENSSWLSRSSICRVLKELKDRGELKLDNGRF FT RNGDGLKQH" FT misc_feature complement(1034927..1034977) FT /note="PS00237 G-protein coupled receptors signature." FT /inference="protein motif:Prosite:PS00237" FT tRNA complement(1036636..1036720) FT /locus_tag="ROD_t17" FT /product="transfer RNA-Ser" FT /anticodon=(pos:1036684..1036686,aa:Ser) FT /note="tRNA Ser anticodon GGA, Cove score 53.14" FT CDS complement(1037047..1037265) FT /transl_table=11 FT /gene="infA" FT /locus_tag="ROD_09485" FT /product="translation initiation factor IF-1" FT /db_xref="GOA:D2TRD8" FT /db_xref="InterPro:IPR004368" FT /db_xref="InterPro:IPR006196" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR016027" FT /db_xref="InterPro:IPR022967" FT /db_xref="UniProtKB/TrEMBL:D2TRD8" FT /protein_id="CBG87727.1" FT /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYI FT RILTGDKVTVELTPYDLSKGRIVFRSR" FT misc_feature complement(1037056..1037253) FT /gene="infA" FT /locus_tag="ROD_09485" FT /note="HMMPfam hit to PF01176, S1, IF1 type, score 2.1e-37" FT /inference="protein motif:PFAM:PF01176" FT CDS complement(1037563..1038267) FT /transl_table=11 FT /gene="aat" FT /locus_tag="ROD_09491" FT /product="leucyl/phenylalanyl-tRNA-protein transferase" FT /db_xref="GOA:D2TRD9" FT /db_xref="InterPro:IPR004616" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:D2TRD9" FT /protein_id="CBG87728.1" FT /translation="MRLVQLSRHSLAFPSPEGALREPNGLLALGGDLSPARLLMAYQRG FT IFPWFSPGDPILWWSPDPRAVLWPDAFHISRSMKRFHKRSPYRVTLNYTFDQTIAGCAS FT DRDEGTWITPAVVEAYHRLHELGHAHSIEVWRNDELVGGMYGVSQGALFCGESMFSRQE FT NASKTALLVFCAEFLRAGGKLMDCQVLNDHTASLGAVEIPRRTYLDHLDALRQRRLPSH FT FWVPRTLFSPRE" FT misc_feature complement(1037656..1038168) FT /gene="aat" FT /locus_tag="ROD_09491" FT /note="HMMPfam hit to PF03588, FT Leucyl/phenylalanyl-tRNA-protein transferase, score FT 1.5e-110" FT /inference="protein motif:PFAM:PF03588" FT CDS complement(1038310..1040031) FT /transl_table=11 FT /gene="cydC" FT /locus_tag="ROD_09501" FT /product="transport ATP-binding protein CydC" FT /db_xref="GOA:D2TRE0" FT /db_xref="InterPro:IPR001140" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR011527" FT /db_xref="InterPro:IPR014223" FT /db_xref="InterPro:IPR017871" FT /db_xref="InterPro:IPR017940" FT /db_xref="UniProtKB/TrEMBL:D2TRE0" FT /protein_id="CBG87729.1" FT /translation="MRALLPYLTLYKRHKWMLTLGIALAILTLLASIGLLTLSGWFLSA FT SALAGVAGIYSFNYMLPAAGVRGAAIARTAGRYFERLVSHDATFRVLQHLRVHTFSKLL FT PLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLAGAFVVIMVVTLGLSVFDFTLA FT CTLGGIMLLTLFIMPPVFYRAGKTTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRY FT RAQMENTELQWHEAQRRQSELTALSQALMLLTGAVAVLLMLWMASGGVGGNSQPGALIA FT LFVFCALAAFEALAPVTGAFQHLGQVIASALRISELTEQKPEVTFPDSELSVPKRVALT FT LRDLSFSYPGQAQKALDSLSLQVSPGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILL FT NDNPLSAFNESTLRKTIGVVPQRVHLFSATLRDNLLLAAPEASDERLTETLCRVGLEKL FT LSDGGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQMLELL FT AAVMREKTVLMVTHRLRGLARFDRIIVMDNGQIIEQGNHADLLAMQGRYYQFKQGL" FT misc_feature complement(1038388..1038936) FT /gene="cydC" FT /locus_tag="ROD_09501" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 2.1e-64" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(1038565..1038609) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(1038892..1038915) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(join(1039132..1039200,1039228..1039296, FT 1039486..1039554,1039567..1039635,1039825..1039893, FT 1039906..1039974)) FT /gene="cydC" FT /locus_tag="ROD_09501" FT /note="6 probable transmembrane helices predicted for FT ROD09501 by TMHMM2.0 at aa 20-42, 47-69, 133-155, 160-182, FT 246-268 and 278-300" FT sig_peptide complement(1039885..1040031) FT /gene="cydC" FT /locus_tag="ROD_09501" FT /note="Signal peptide predicted for ROD09501 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.982 between residues 49 and 50" FT CDS complement(1040032..1041798) FT /transl_table=11 FT /gene="cydD" FT /locus_tag="ROD_09511" FT /product="transport ATP-binding protein CydD" FT /db_xref="GOA:D2TRE1" FT /db_xref="InterPro:IPR001140" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR011527" FT /db_xref="InterPro:IPR014216" FT /db_xref="InterPro:IPR017871" FT /db_xref="InterPro:IPR017940" FT /db_xref="UniProtKB/TrEMBL:D2TRE1" FT /protein_id="CBG87730.1" FT /translation="MNKTRQKELTRWLKQQSVISQRWLMISRLLGFVSGVLIVAQAWLM FT ARILQHMIVDNIPREALLTPFVILVLVFVLRAWVVWLRERVGFHAGQHIRFEIRRQVLD FT RLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVCVPLLIVAAIFPANW FT AAALILLGTAPLIPLFMAMVGMGAADANRRNFQALARLSGHFLDRLRGMETLRIFGRGA FT AETENIRAASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGELNFGHY FT GTGVTLTAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPVRGEA FT ELTTKDPLAITAEELIITSPEGKPLAGPLNFTLSAGQRAVLVGRSGSGKTSLLNVLSGF FT LSYQGSLRINGVELRDLSPEAWRRQLSWVGQNPQLPAATIRKNVLLARPEASEQELRAA FT LDSAWVSEFLPLLPQGVDTPLGDQAARLSVGQAQRVAVARALLNPCKLLLLDEPAASLD FT AHSEQRVMQALKAASTRQTTLMVTHQLEDLADWDTILVMQDGQIIEQGSWAELSAAQGA FT FATLLAHRQEEI" FT misc_feature complement(1040122..1040673) FT /gene="cydD" FT /locus_tag="ROD_09511" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 8.9e-68" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(1040299..1040343) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(1040629..1040652) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(join(1040887..1040955,1040998..1041066, FT 1041244..1041312,1041322..1041390,1041559..1041618, FT 1041661..1041729)) FT /gene="cydD" FT /locus_tag="ROD_09511" FT /note="6 probable transmembrane helices predicted for FT ROD09511 by TMHMM2.0 at aa 24-46, 61-80, 137-159, 163-185, FT 245-267 and 282-304" FT misc_feature complement(1040902..1041729) FT /gene="cydD" FT /locus_tag="ROD_09511" FT /note="HMMPfam hit to PF00664, ABC transporter, FT transmembrane region, score 2.8e-47" FT /inference="protein motif:PFAM:PF00664" FT sig_peptide complement(1041673..1041798) FT /gene="cydD" FT /locus_tag="ROD_09511" FT /note="Signal peptide predicted for ROD09511 by SignalP 2.0 FT HMM (Signal peptide probability 0.668) with cleavage site FT probability 0.322 between residues 42 and 43" FT CDS complement(1041913..1042881) FT /transl_table=11 FT /locus_tag="ROD_09521" FT /product="thioredoxin reductase" FT /EC_number="1.8.1.9" FT /db_xref="GOA:D2TRE2" FT /db_xref="InterPro:IPR000103" FT /db_xref="InterPro:IPR001327" FT /db_xref="InterPro:IPR005982" FT /db_xref="InterPro:IPR008255" FT /db_xref="InterPro:IPR013027" FT /db_xref="InterPro:IPR023753" FT /db_xref="UniProtKB/TrEMBL:D2TRE2" FT /protein_id="CBG87731.1" FT /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT FT TTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSAEY FT TCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEAL FT YLANIASEVHLIHRRDTFRAEKILIKRLMDKVENGNIVLHTHRTLEEVTGDQMGVTGLR FT LRDTQNADNIEALDVAGLFVAIGHSPTTAIFEGQLELENGYIKVQSGIHGNATQTSVPG FT VFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADACK" FT misc_feature complement(1042003..1042860) FT /locus_tag="ROD_09521" FT /note="HMMPfam hit to PF07992, FAD-dependent pyridine FT nucleotide-disulphide oxidoreductase, score 4e-52" FT /inference="protein motif:PFAM:PF07992" FT misc_feature complement(1042147..1042440) FT /locus_tag="ROD_09521" FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, NAD-binding region, FT score 5.7e-26" FT /inference="protein motif:PFAM:PF00070" FT misc_feature complement(1042414..1042476) FT /note="PS00573 Pyridine nucleotide-disulphide FT oxidoreductases class-II active site." FT /inference="protein motif:Prosite:PS00573" FT sig_peptide complement(1042807..1042881) FT /locus_tag="ROD_09521" FT /note="Signal peptide predicted for ROD09521 by SignalP 2.0 FT HMM (Signal peptide probability 0.987) with cleavage site FT probability 0.968 between residues 25 and 26" FT CDS 1043426..1043920 FT /transl_table=11 FT /gene="lrp" FT /locus_tag="ROD_09531" FT /product="leucine-responsive regulatory protein" FT /db_xref="GOA:D2TRE3" FT /db_xref="InterPro:IPR000485" FT /db_xref="InterPro:IPR011008" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR019885" FT /db_xref="InterPro:IPR019887" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:D2TRE3" FT /protein_id="CBG87732.1" FT /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPC FT LERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQ FT ECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKT FT R" FT misc_feature 1043513..1043593 FT /note="PS00519 Bacterial regulatory proteins, asnC family FT signature." FT /inference="protein motif:Prosite:PS00519" FT misc_feature 1043651..1043881 FT /gene="lrp" FT /locus_tag="ROD_09531" FT /note="HMMPfam hit to PF01037, Bacterial regulatory FT proteins, AsnC/Lrp, score 5.2e-31" FT /inference="protein motif:PFAM:PF01037" FT CDS 1044062..1048042 FT /transl_table=11 FT /gene="ftsK" FT /locus_tag="ROD_09541" FT /product="dna translocase ftsk" FT /note="essential cell division protein" FT /db_xref="GOA:D2TS22" FT /db_xref="InterPro:IPR002543" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR018541" FT /db_xref="UniProtKB/TrEMBL:D2TS22" FT /protein_id="CBG87733.1" FT /translation="MSQEYTEDKEVTLTKLSSGRRLLEALLILIALFAVWLMAALLSFN FT PSDPSWSQTAWHEPIHNLGGAPGAWLADTLFFIFGVMAYTIPVIIIGGCWFAWRHQAND FT DYIDYFAVSLRLIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGG FT TITLLCIWAAGLTLFTGWSWVTIAEKIGGWLLNILTFASNRTRRDDTWVEDDEYEDDDY FT EDDADGVKRESRRARILRGALARRKRLAEKFINPHGRQTDAALFSGKRMDDEDDILLSA FT RGVAADPNDVLFSGHRATPSEYDEYDPLLNGHSVTEPVAAAAAATAATQEWAAPADPVM FT QTPQVPGAEPIPTQPTVEWQAVPGPQTGEPVIAPAPDGYPPQNHYAAQTAAHYAQPQPV FT QPEPQPPYYAPPVTEADNVQPALAQPQWQSSPPAVEPSWHEEPALPQEPVQQPTYSQNP FT TYQQQSALQHEQTFQPQPAFQQPDVAQPAAESQPVVEESKPARPPLYYFEEVEEKRARE FT REQLAAWYQPIPEPVKEPQPVKPAVSAPSVPPVEAATVTPDAAGVKDAALSAGAAAAAA FT APVFSLANGGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRMAEERARQAE FT QRDAQYSDEEIDAMQQDELARQFAQSQQNRYGEAYQHDVPQGEHEDAAAEAELARQFAA FT SQQQRYSGEQPAGANPFSLDDFAFSPVKALVDDGPHEPLFTPGVMPEPTPVPQPQQYQQ FT PQQPVAPQPQYQQPQQPVASQPQYQQPQQPVAPQQYQQPQQPVAPQPQYQQPQQPVAPQ FT QESLIHPLLMRNGDSRPLQRPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLAD FT FRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPY FT VGLELPNKKRQTVYLREVLDNAKFRENPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGT FT TGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAAN FT ALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDAQHPVL FT EKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIK FT ANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTMPVRVHGAFVRDQEVH FT AVVQDWKARGRPQYIDGITSDSESEGGGGGFDGGEELDPLFDQAVNFVTEKRKASISGV FT QRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFE" FT misc_feature join(1044125..1044193,1044284..1044352,1044389..1044457, FT 1044470..1044535,1044554..1044622) FT /gene="ftsK" FT /locus_tag="ROD_09541" FT /note="5 probable transmembrane helices predicted for FT ROD09541 by TMHMM2.0 at aa 22-44, 75-97, 110-132, 137-158 FT and 165-187" FT misc_feature 1044311..1044343 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1044410..1044442 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1046891..1047535 FT /gene="ftsK" FT /locus_tag="ROD_09541" FT /note="HMMPfam hit to PF01580, Cell divisionFtsK/SpoIIIE, FT score 3.9e-105" FT /inference="protein motif:PFAM:PF01580" FT misc_feature 1047023..1047046 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 1048188..1048799 FT /transl_table=11 FT /gene="lolA" FT /locus_tag="ROD_09551" FT /product="outer membrane lipoprotein carrier protein" FT /db_xref="GOA:D2TS23" FT /db_xref="InterPro:IPR004564" FT /db_xref="InterPro:IPR018323" FT /db_xref="UniProtKB/TrEMBL:D2TS23" FT /protein_id="CBG87734.1" FT /translation="MKKIAITCALLSGFVVSSVQADAAGDLKSRLDKVSSFHASFTQKV FT TDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKD FT ATGNTPFMLIARNQSSDWQQYNIRQNGDDFVLTPKTGNGNLKQFTINVGRDGTIHQFSA FT VEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK" FT sig_peptide 1048188..1048250 FT /gene="lolA" FT /locus_tag="ROD_09551" FT /note="Signal peptide predicted for ROD09551 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.525 between residues 21 and 22" FT misc_feature 1048281..1048760 FT /gene="lolA" FT /locus_tag="ROD_09551" FT /note="HMMPfam hit to PF03548, Outer membrane lipoprotein FT carrier protein LolA, score 7.9e-77" FT /inference="protein motif:PFAM:PF03548" FT CDS 1048808..1050151 FT /transl_table=11 FT /locus_tag="ROD_09561" FT /product="putative ATPase" FT /db_xref="GOA:D2TS24" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR003959" FT /db_xref="InterPro:IPR021886" FT /db_xref="UniProtKB/TrEMBL:D2TS24" FT /protein_id="CBG87735.1" FT /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAI FT EAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNA FT GRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLK FT SLTAEDIEQVLSQAMEDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMA FT EVDDSGKRVLLPALLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARI FT ITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYL FT ACAPKSNAVYTAFKAAMSDARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAY FT AAGEEYFPEEMAQTRYYHPTNRGLEGKIGEKLAWLAGQDQNSPIKRYR" FT misc_feature 1048961..1049482 FT /locus_tag="ROD_09561" FT /note="HMMPfam hit to PF00004, AAA ATPase, core, score FT 1.5e-27" FT /inference="protein motif:PFAM:PF00004" FT misc_feature 1048976..1048999 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 1050243..1051535 FT /transl_table=11 FT /gene="serS" FT /locus_tag="ROD_09571" FT /product="seryl-tRNA synthetase" FT /db_xref="GOA:D2TS25" FT /db_xref="InterPro:IPR002314" FT /db_xref="InterPro:IPR002317" FT /db_xref="InterPro:IPR006195" FT /db_xref="InterPro:IPR010978" FT /db_xref="InterPro:IPR015866" FT /db_xref="UniProtKB/TrEMBL:D2TS25" FT /protein_id="CBG87736.1" FT /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVNTE FT NLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDVLQAEIRDIALTIP FT NLPADDVPVGKDENDNVEVSRWGTPRQFDFEVRDHVTLGEMHTGLDFAAAVKLTGSRFV FT VMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNHDTLYGTGQLPKFAGDLFHTRP FT LEEEADSSNYALIPTAEVPLTNLVRDEIIDEDLLPIKMTAHTPCFRSEAGSYGRDTRGL FT IRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIVLCTGDMGFGACKT FT YDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTL FT VAVMENYQQADGRIEVPEVLRPYMNGLEYIG" FT misc_feature 1050243..1050563 FT /gene="serS" FT /locus_tag="ROD_09571" FT /note="HMMPfam hit to PF02403, Seryl-tRNA synthetase, class FT IIa, N-terminal, score 8.7e-47" FT /inference="protein motif:PFAM:PF02403" FT misc_feature 1050756..1051292 FT /gene="serS" FT /locus_tag="ROD_09571" FT /note="HMMPfam hit to PF00587, Aminoacyl-tRNA synthetase, FT class II (G, H, P and S), score 5.5e-66" FT /inference="protein motif:PFAM:PF00587" FT misc_feature 1051041..1051115 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT /inference="protein motif:Prosite:PS00179" FT CDS 1051761..1054205 FT /transl_table=11 FT /gene="dmsA" FT /locus_tag="ROD_09581" FT /product="anaerobic dimethyl sulfoxide reductase chain A" FT /db_xref="GOA:D2TS26" FT /db_xref="InterPro:IPR006311" FT /db_xref="InterPro:IPR006655" FT /db_xref="InterPro:IPR006656" FT /db_xref="InterPro:IPR006657" FT /db_xref="InterPro:IPR006963" FT /db_xref="InterPro:IPR009010" FT /db_xref="InterPro:IPR011888" FT /db_xref="InterPro:IPR019546" FT /db_xref="UniProtKB/TrEMBL:D2TS26" FT /protein_id="CBG87737.1" FT /translation="MKTKISDAVMATEVSRRGLVKTTAIGGLALASSAFTLPFTRIANA FT AQAISPAQASEKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRAC FT LRGRSMRRRVYNPDRLKYPMKRVGKRGEGKFERISWDEAYDIIVSNMQRLIKEYGNESI FT YLNYGTGTLGGTLTRSWPPGKTLIARLMNCCGGYLNHYGDYSSAQIAAGLNYTYGGWAD FT GNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGR FT EDEWIPIRPGTDAALVNALAYVLITENMVDQPFLDTYCVGYDEKTLPASAPKNGHYKAY FT ILGEGKDGIAKTPEWAAQITGIPADRIVKLAREIGSAKPAYISQGWGPQRHANGEIATR FT AISMLAILTGNVGINGGNSGAREGSYSLPFERMPTLENPVETSISMFMWTDAIERGPEM FT TALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCEMIVVIDCHMT FT SSAKYADILLPDCTASEQMDFALDASCGNMSYVIFADQAIKPHFECKTIYQMTSELAKR FT LGVEQQFTEGRSQEEWMRHLYEQSRKAIPDLPTFEEFRKQGIFKQRDPQGHHVAYKAFR FT DDPQANPLTTPSGRIEIYSQELAEIAASWELPEGDVIDPLPIYTPGFENYNDPLTKDYP FT LQLTGFHYKSRVHSTYGNVDVLKAACRQEMWINPLDAQKRGIANGDKVRIFNGRGELHI FT EAKVTPRMMPGVVALGEGAWYDPDTKRIDRGGCINVLTTQRPSPLAKGNPSHTNLVQVE FT KV" FT sig_peptide 1051761..1051895 FT /gene="dmsA" FT /locus_tag="ROD_09581" FT /note="Signal peptide predicted for ROD09581 by SignalP 2.0 FT HMM (Signal peptide probability 0.988) with cleavage site FT probability 0.957 between residues 45 and 46" FT misc_feature 1051926..1052108 FT /gene="dmsA" FT /locus_tag="ROD_09581" FT /note="HMMPfam hit to PF04879, Molybdopterin oxidoreductase FT Fe4S4 region, score 5.1e-19" FT /inference="protein motif:PFAM:PF04879" FT misc_feature 1051941..1051997 FT /note="PS00551 Prokaryotic molybdopterin oxidoreductases FT signature 1." FT /inference="protein motif:Prosite:PS00551" FT misc_feature 1052115..1053488 FT /gene="dmsA" FT /locus_tag="ROD_09581" FT /note="HMMPfam hit to PF00384, Molybdopterin FT oxidoreductase, score 4.6e-185" FT /inference="protein motif:PFAM:PF00384" FT misc_feature 1053309..1053362 FT /note="PS00490 Prokaryotic molybdopterin oxidoreductases FT signature 2." FT /inference="protein motif:Prosite:PS00490" FT misc_feature 1053843..1054184 FT /gene="dmsA" FT /locus_tag="ROD_09581" FT /note="HMMPfam hit to PF01568, Molydopterin FT dinucleotide-binding region, score 6.5e-37" FT /inference="protein motif:PFAM:PF01568" FT misc_feature 1053951..1054034 FT /note="PS00932 Prokaryotic molybdopterin oxidoreductases FT signature 3." FT /inference="protein motif:Prosite:PS00932" FT CDS 1054216..1054833 FT /transl_table=11 FT /gene="dmsB" FT /locus_tag="ROD_09591" FT /product="anaerobic dimethyl sulfoxide reductase chain B" FT /db_xref="GOA:D2TS27" FT /db_xref="InterPro:IPR001450" FT /db_xref="InterPro:IPR014297" FT /db_xref="InterPro:IPR017896" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:D2TS27" FT /protein_id="CBG87738.1" FT /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPDVSFRRIYEYAGG FT DWQEDNGVWQQNVFAYYLSISCNHCADPACTKVCPSGAMHKREDGFVVVDEEVCIGCRY FT CHMACPYGAPQYNAAKGHMTKCDGCHDRVAEGKKPICVESCPLRALDFGPIDELRKKHG FT DLAAVAPLPGAHFTRPNIVIKPNANSRPTGDTTGYLANPKEV" FT misc_feature 1054384..1054416 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1054489..1054560 FT /gene="dmsB" FT /locus_tag="ROD_09591" FT /note="HMMPfam hit to PF00037, 4Fe-4S ferredoxin, FT iron-sulphur binding, score 1.7e-07" FT /inference="protein motif:PFAM:PF00037" FT misc_feature 1054510..1054545 FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT /inference="protein motif:Prosite:PS00198" FT misc_feature 1054519..1054536 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT /inference="protein motif:Prosite:PS00190" FT misc_feature 1054591..1054608 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT /inference="protein motif:Prosite:PS00190" FT CDS 1054835..1055698 FT /transl_table=11 FT /gene="dmsC" FT /locus_tag="ROD_09601" FT /product="anaerobic dimethyl sulfoxide reductase chain C" FT /db_xref="GOA:D2TS28" FT /db_xref="InterPro:IPR007059" FT /db_xref="UniProtKB/TrEMBL:D2TS28" FT /protein_id="CBG87739.1" FT /translation="MGSGWHEWPLMIFTVFGQCVVGGFIVLALALMKGELRAETQQRVT FT VCMVALWVLMGIGFIASVLHLGSPMRAFNSLNRVGSSALSNEIASGSIFFAVGGIGWLL FT AALKKLSPALRNLWLIATMILGVLFVWMMVRVYNSIDTVPTWYSVWTPLGFFLTLFLGG FT PLLGYLLLRVAGVDGWAMRLLPAISLLALVVSAIMSVMQGAELATIHSSIQQASALVPD FT YGTLMAWRIVVLAVAMCCWIVPQLKGYQPAVPLLSVAFILLLVGELIGRGVFYGLHMTA FT GVAVAS" FT misc_feature 1054835..1055665 FT /gene="dmsC" FT /locus_tag="ROD_09601" FT /note="HMMPfam hit to PF04976, DMSO reductase anchor FT subunit (DmsC), score 1.5e-163" FT /inference="protein motif:PFAM:PF04976" FT misc_feature join(1054862..1054930,1054967..1055035,1055078..1055146, FT 1055183..1055236,1055279..1055347,1055366..1055434, FT 1055513..1055572,1055591..1055659) FT /gene="dmsC" FT /locus_tag="ROD_09601" FT /note="8 probable transmembrane helices predicted for FT ROD09601 by TMHMM2.0 at aa 10-32, 45-67, 82-104, 117-134, FT 149-171, 178-200, 227-246 and 253-275" FT CDS complement(1055829..1056455) FT /transl_table=11 FT /locus_tag="ROD_09611" FT /product="putative isochorismatase" FT /db_xref="GOA:D2TS29" FT /db_xref="InterPro:IPR000868" FT /db_xref="UniProtKB/TrEMBL:D2TS29" FT /protein_id="CBG87740.1" FT /translation="MARPYVRLDKNDAAVLLVDHQAGLLSLVRDIDPDKFKNNVLALGD FT LAKYFNLPTILTTSFETGPNGPLVPELKAQFPDAPYIARPGNINAWDNEDFVNAVKATG FT KKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLM FT TWFGVACELHRDWRNDIEGLATLFSNHIPDYRNLMTSYDTLTKQK" FT misc_feature complement(1055943..1056434) FT /locus_tag="ROD_09611" FT /note="HMMPfam hit to PF00857, Isochorismatase hydrolase, FT score 1.3e-63" FT /inference="protein motif:PFAM:PF00857" FT misc_feature complement(1055946..1055978) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 1056769..1057914 FT /transl_table=11 FT /locus_tag="ROD_09621" FT /product="major facilitator superfamily protein" FT /db_xref="GOA:D2TS30" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="InterPro:IPR023745" FT /db_xref="UniProtKB/TrEMBL:D2TS30" FT /protein_id="CBG87741.1" FT /translation="MSTYTRPVLLLLSGLLLLTLAIAVLNTLVPLWLAQENLPTWQVGI FT VSSSYFTGNLVGTLLTGYLIKHLGFNRSYYLASLIFAAGCVGLGVMVGFWSWMAWRFVA FT GVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMIYYVGTFLGQLLVSKVSTELMSVLPW FT VTAMVLAAILPLLFARILHQSEEQNTTPVSSMLKLRQARLGVNGCIISGIVLGSLYGLM FT PLYLKHQGIGNASIGFWMAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVIVGSIAM FT LSQAAMAPALFILGAAGFTLYPVAMAWACEKVEQHQLVAMNQALLLSYTVGSLLGPSFT FT AMLMQNYSDNLLFIMIASVSFIYLLMLLRNAGHTPDPIAHV" FT sig_peptide 1056769..1056837 FT /locus_tag="ROD_09621" FT /note="Signal peptide predicted for ROD09621 by SignalP 2.0 FT HMM (Signal peptide probability 0.998) with cleavage site FT probability 0.771 between residues 23 and 24" FT misc_feature join(1056787..1056855,1056898..1056966,1056985..1057053, FT 1057066..1057125,1057159..1057218,1057246..1057314, FT 1057375..1057443,1057471..1057539,1057558..1057611, FT 1057621..1057689,1057723..1057791,1057819..1057872) FT /locus_tag="ROD_09621" FT /note="12 probable transmembrane helices predicted for FT ROD09621 by TMHMM2.0 at aa 7-29, 44-66, 73-95, 100-119, FT 131-150, 160-182, 203-225, 235-257, 264-281, 285-307, FT 319-341 and 351-368" FT misc_feature 1056799..1057803 FT /locus_tag="ROD_09621" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 7.5e-28" FT /inference="protein motif:PFAM:PF07690" FT misc_feature 1056946..1056996 FT /note="PS00237 G-protein coupled receptors signature." FT /inference="protein motif:Prosite:PS00237" FT misc_feature 1056991..1057023 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1057174..1057221 FT /note="PS00225 Crystallins beta and gamma 'Greek key' motif FT signature." FT /inference="protein motif:Prosite:PS00225" FT CDS 1058127..1059551 FT /transl_table=11 FT /locus_tag="ROD_09631" FT /product="putative amino acid permease" FT /db_xref="GOA:D2TS31" FT /db_xref="InterPro:IPR002293" FT /db_xref="InterPro:IPR004841" FT /db_xref="UniProtKB/TrEMBL:D2TS31" FT /protein_id="CBG87742.1" FT /translation="MAGAQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWVF FT IFALYFIPYALIVGQLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQKP FT QAILIALGWALNGDGSLIKEYTVVALQGLTLVLFVFFMWVASRGMKSLKIVGSVAGIAM FT FVMSILYVVMAVTAPAITHVEIATTNITWQTFIPHFDFTYITTISMLVFAVGGAEKISP FT YVNQTRNPGREFPKGMLFLAVMVAVCAILGSLAMGMMFDSGNIPDDLMTNGQYYAFQKL FT GEYYHMGNVLMIIYAVANTLGQIAALVFSIDAPLKVLLGDADSKYIPQRLCRTNASGTP FT VNGYILTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVIRLAQ FT NYQPEYVFIRNRPLALTVGIWCFGFTAFACLTGIFPKMDAFTPEWTFQLTLNIVTPFVL FT VGLGLIFPLLARRKAL" FT misc_feature join(1058154..1058213,1058232..1058300,1058505..1058564, FT 1058598..1058666,1058709..1058777,1058838..1058906, FT 1058985..1059053,1059147..1059215,1059258..1059326, FT 1059363..1059431,1059459..1059527) FT /locus_tag="ROD_09631" FT /note="11 probable transmembrane helices predicted for FT ROD09631 by TMHMM2.0 at aa 10-29, 36-58, 127-146, 158-180, FT 195-217, 238-260, 287-309, 341-363, 378-400, 413-435 and FT 445-467" FT misc_feature 1058163..1059548 FT /locus_tag="ROD_09631" FT /note="HMMPfam hit to PF00324, Amino acid FT permease-associated region, score 0.0032" FT /inference="protein motif:PFAM:PF00324" FT misc_feature 1059381..1059413 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1059546..1059989) FT /transl_table=11 FT /locus_tag="ROD_09641" FT /product="putative phosphotransferase enzyme II, A FT component" FT /db_xref="GOA:D2TS32" FT /db_xref="InterPro:IPR002178" FT /db_xref="InterPro:IPR016152" FT /db_xref="UniProtKB/TrEMBL:D2TS32" FT /protein_id="CBG87743.1" FT /translation="MTHSLFSAWQFQQRCDSWQQAVRLACLPLAEQGVINGLYAHQIVN FT ATEKLGPWYILSPGFALPHARPEEGVICDETHLSLLSLQEGVDFPDHPDIRLIIVLAAA FT NSTGHIATIQRLVCWLDKAERLAQLTQISSPAQLHAVLFAHGS" FT misc_feature complement(1059555..1059980) FT /locus_tag="ROD_09641" FT /note="HMMPfam hit to PF00359, Phosphotransferase system, FT phosphoenolpyruvate-dependent sugar EIIA 2, score 3.3e-16" FT /inference="protein motif:PFAM:PF00359" FT CDS complement(1060041..1060952) FT /transl_table=11 FT /locus_tag="ROD_09651" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TS33" FT /db_xref="InterPro:IPR005475" FT /db_xref="InterPro:IPR005476" FT /db_xref="InterPro:IPR009014" FT /db_xref="InterPro:IPR015941" FT /db_xref="InterPro:IPR020826" FT /db_xref="UniProtKB/TrEMBL:D2TS33" FT /protein_id="CBG87744.1" FT /translation="MKAPRDEIGKALLALKAKGYPIVVIDSDLASSTRTDQFQQAWPDA FT FFEMGIAEGSAMSFAVGQALEGNIPFYVNFAMFVTGTAWTQLRQACYAKVNIKLVGSHP FT GMDDGPDGASHHALEDLALTRVLPGITILTPADAEEIEAAFEQAAKIIGPVYIRVAREP FT MPVRDKSAVPRVTDIAAVADTGDDFAIVYEGTVLEQATSGYEQLLAEGKRGKLIHVATL FT KPFNHILFLQLIANCPRIVTLENHTINGGLGGQVAEVLAETGGSARLTRLGTRDTFTES FT GNSRQLKEKYGICAAAVVEALR" FT misc_feature complement(1060059..1060424) FT /locus_tag="ROD_09651" FT /note="HMMPfam hit to PF02780, Transketolase, C-terminal, FT score 1.1e-05" FT /inference="protein motif:PFAM:PF02780" FT misc_feature complement(1060455..1060952) FT /locus_tag="ROD_09651" FT /note="HMMPfam hit to PF02779, Transketolase, central FT region, score 1.5e-27" FT /inference="protein motif:PFAM:PF02779" FT CDS complement(1060952..1061749) FT /transl_table=11 FT /locus_tag="ROD_09661" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR005474" FT /db_xref="UniProtKB/TrEMBL:D2TS34" FT /protein_id="CBG87745.1" FT /translation="MNIEQLKSRALAARRDIVTMIYESGLGHPGGALSIIDVLTWIYHQ FT EVDLNASPRARVVMSKGHAVAAQYAMLYQKGNIARSEFSTFRQINSRLQGHPSVKSLPE FT VDATTGLLGQGLSIALGMAAAKKRAKDPHRVFAILGDGEMHEGQVWESLQQASHMKLDN FT LVAVIDYNGFSSHDPVNEVINLEPLADKIRSFGWHVLEMQNGNDMHQVADTLMLSRHLK FT GSPVAIVAHTTKGCGVSYMENNGEWHSKTPSAEQYQQAMEELQ" FT misc_feature complement(1061006..1061578) FT /locus_tag="ROD_09661" FT /note="HMMPfam hit to PF00456, Transketolase, N-terminal, FT score 4.1e-40" FT /inference="protein motif:PFAM:PF00456" FT CDS complement(1061762..1063027) FT /transl_table=11 FT /locus_tag="ROD_09671" FT /product="putative membrane protein" FT /db_xref="GOA:D2TS35" FT /db_xref="InterPro:IPR004703" FT /db_xref="UniProtKB/TrEMBL:D2TS35" FT /protein_id="CBG87746.1" FT /translation="MDLLRFIVFDILGVTPLLVGFIALIGLLIQRKPIEKVLSGTFKTI FT VGFLVFAGGAGLAVTSLGNFQTLFSDGFGLKGVMPLAEALTGLAQTKFAMCVSLIMVIG FT FGWNLVFARFTPFKYIFLTGQHNLYLSALLTVTLKALGYSDGVTIIVGSVLLGLAACIY FT PAIAQPWMRKITGNDEIAMGHYVTLAYAASGWIGAKVGDPKESTEKLNLPGWLGIFKDY FT IVSVSISVSIFYYIAALAAGKTAVSVVAGGMHWLVYPLFQSLTFTASLYIIITGVRLLL FT SEIVPAFLGISEKFIPNAKPALDCPVVFPYAPTATVLGFISSFIGGLVVMGVLALIGQT FT VIIPVAIPYFFIGATAAVFGNASGGWKGAIAGSFITGILIGIGPALIYPIMESVGLSGT FT SFPETDFVALGLVVYYIGKMLP" FT misc_feature complement(1061801..1063027) FT /locus_tag="ROD_09671" FT /note="HMMPfam hit to PF04215, Putative sugar-specific FT permease, SgaT/UlaA, score 2.8e-114" FT /inference="protein motif:PFAM:PF04215" FT misc_feature complement(join(1061855..1061923,1061942..1062010, FT 1062038..1062106,1062182..1062250,1062278..1062346, FT 1062527..1062586,1062614..1062673,1062692..1062760, FT 1062818..1062886,1062944..1063012)) FT /locus_tag="ROD_09671" FT /note="10 probable transmembrane helices predicted for FT ROD09671 by TMHMM2.0 at aa 6-28, 48-70, 90-112, 119-138, FT 148-167, 228-250, 260-282, 308-330, 340-362 and 369-391" FT misc_feature complement(1062296..1062319) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(1062545..1062577) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1063045..1063323) FT /transl_table=11 FT /locus_tag="ROD_09681" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TS36" FT /db_xref="InterPro:IPR003501" FT /db_xref="InterPro:IPR013011" FT /db_xref="UniProtKB/TrEMBL:D2TS36" FT /protein_id="CBG87747.1" FT /translation="MMKGLIVCRTGMGSSLMLKIKAQKIIDKHGWDIELEHDVLSGLAT FT WQGIDFVLTMRDLTDEIEAAGFKAIGITDLMNSEEMETALISVIQGN" FT misc_feature complement(1063054..1063317) FT /locus_tag="ROD_09681" FT /note="HMMPfam hit to PF02302, Phosphotransferase system, FT lactose/cellobiose-specific IIB subunit, score 5e-11" FT /inference="protein motif:PFAM:PF02302" FT CDS 1063441..1064289 FT /transl_table=11 FT /locus_tag="ROD_09691" FT /product="putative DNA binding protein" FT /db_xref="GOA:D2TS37" FT /db_xref="InterPro:IPR000281" FT /db_xref="InterPro:IPR001347" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TS37" FT /protein_id="CBG87748.1" FT /translation="MSQINANLLINIRNEVAGLSPILEKVGRFVTENPDFVMRHTITEL FT ADSIETSEGSITRFCRAFGFKGFSDFRTALALEQGAARPEAQGNEEIADVVTSIRDSYA FT IINSQELQAAAAWLNQVNNVAIYAVGTAVPVALFLQMNLIKMGKSASFVDRFYLTTSSV FT MLEPQSQGVIVVHTEQTSADMMQALALAKQHGARILSLTRGTFAPLSRLSDWNLQAAVA FT LKGEGEFGFAEIAGAMMVADRLLNALEEQDERYAECRKAHQKSIFSIESVASKLSEYFM FT S" FT misc_feature 1063456..1063719 FT /locus_tag="ROD_09691" FT /note="HMMPfam hit to PF01418, Helix-turn-helix protein FT RpiR, score 7.2e-11" FT /inference="protein motif:PFAM:PF01418" FT misc_feature 1063558..1063623 FT /note="Predicted helix-turn-helix motif with score FT 1402.000, SD 3.96 at aa 40-61, sequence FT HTITELADSIETSEGSITRFCR" FT misc_feature 1063789..1064196 FT /locus_tag="ROD_09691" FT /note="HMMPfam hit to PF01380, Sugar isomerase (SIS), score FT 0.0056" FT /inference="protein motif:PFAM:PF01380" FT CDS complement(1064295..1065086) FT /transl_table=11 FT /locus_tag="ROD_09701" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TS38" FT /protein_id="CBG87749.1" FT /translation="MRLLLSGILLFSAQCANAANSCDINAIVQHAWPDATPTTDGFTIR FT DRQIITISNASPQRAICRVWPARPELTLAAVPLMSNEQTDYDHTGDLELLVLDSATLAV FT RQRLHLPNRMSDDAFRITRLTLDTARWKVTPDQIAFGLHIVRDGSSRVNPFREDALSLY FT VIENNQLRTLLPGIILEDNSGEWDGTCAGEFNDIKRTLAIGTSSHKGYADIRVSEKSVA FT STAYIDGNGECTAKDKPGKASWTLRYDGNQYVVPKNLAPIE" FT sig_peptide complement(1065033..1065086) FT /locus_tag="ROD_09701" FT /note="Signal peptide predicted for ROD09701 by SignalP 2.0 FT HMM (Signal peptide probability 0.998) with cleavage site FT probability 0.883 between residues 18 and 19" FT CDS complement(1065153..1065893) FT /transl_table=11 FT /gene="pflA" FT /locus_tag="ROD_09711" FT /product="pyruvate formate-lyase 1 activating enzyme" FT /db_xref="GOA:D2TS39" FT /db_xref="InterPro:IPR001989" FT /db_xref="InterPro:IPR007197" FT /db_xref="InterPro:IPR012838" FT /db_xref="UniProtKB/TrEMBL:D2TS39" FT /protein_id="CBG87750.1" FT /translation="MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDT FT HGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCL FT DTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQHLVGVSNHRTLEFAQYLAKKNVN FT VWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGV FT KPPKKETMERVKGILEQYGHKVMY" FT misc_feature complement(1065339..1065824) FT /gene="pflA" FT /locus_tag="ROD_09711" FT /note="HMMPfam hit to PF04055, Radical SAM, score 1.3e-27" FT /inference="protein motif:PFAM:PF04055" FT misc_feature complement(1065777..1065842) FT /note="PS01087 Radical activating enzymes signature." FT /inference="protein motif:Prosite:PS01087" FT misc_feature complement(1065777..1065794) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT /inference="protein motif:Prosite:PS00190" FT CDS complement(1066085..1068367) FT /transl_table=11 FT /gene="pflB" FT /locus_tag="ROD_09721" FT /product="formate acetyltransferase 1" FT /db_xref="GOA:D2TS40" FT /db_xref="InterPro:IPR001150" FT /db_xref="InterPro:IPR004184" FT /db_xref="InterPro:IPR005949" FT /db_xref="InterPro:IPR019777" FT /db_xref="UniProtKB/TrEMBL:D2TS40" FT /protein_id="CBG87751.1" FT /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLA FT GATEATTTLWDSVMEGVKQENRTHAPVDFDTSVASTITSHDAGYINKALEKIVGLQTEA FT PLKRAIIPFGGIKMVEGSCKAYNRELDPMLKKIFTEYRKTHNQGVFDVYTPDILRCRKS FT GVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKFAQFTSLQSDLENGVNLEATIRLRE FT EIAEQHRALGQIKEMAAKYGCDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRVS FT TFLDAYIERDLKAGKITEQDAQEMIDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIG FT GMGVDGRTLVTKNSFRFLNTLYTMGPSPEPNITVLWSEKLPLNFKKFAAKVSIDTSSLQ FT YENDDLMRPDFNNDDYAIACCVSPMVVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQ FT VGPKSEPIKGDVLNFDEVMERMDHFMDWLAKQYVTALNVIHYMHDKYSYEASLMALHDR FT DVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAVDFEIEGEYPQFGNNDARVDD FT MAVDLVERFMKKIQKLTTYRNAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGAN FT PMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYF FT HHEASIEGGQHLNVNVMNREMLLDAMEHPEKYPQLTIRVSGYAVRFNSLTKEQQQDVIT FT RTFTQTM" FT misc_feature complement(1066145..1066480) FT /gene="pflB" FT /locus_tag="ROD_09721" FT /note="HMMPfam hit to PF01228, Formate C-acetyltransferase FT glycine radical, score 1.8e-63" FT /inference="protein motif:PFAM:PF01228" FT misc_feature complement(1066154..1066180) FT /note="PS00850 Glycine radical signature." FT /inference="protein motif:Prosite:PS00850" FT misc_feature complement(1066526..1068337) FT /gene="pflB" FT /locus_tag="ROD_09721" FT /note="HMMPfam hit to PF02901, Pyruvate formate-lyase, PFL, FT score 0" FT /inference="protein motif:PFAM:PF02901" FT CDS complement(1068425..1069282) FT /transl_table=11 FT /gene="focA" FT /locus_tag="ROD_09731" FT /product="probable formate transporter 1" FT /db_xref="GOA:D2TS41" FT /db_xref="InterPro:IPR000292" FT /db_xref="InterPro:IPR023999" FT /db_xref="InterPro:IPR024002" FT /db_xref="UniProtKB/TrEMBL:D2TS41" FT /protein_id="CBG87752.1" FT /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVFI FT SIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVICGADLFTSTVLIVVAKASGR FT ITWGQLAKNWLNVYFGNLVGCLLFVLLMWLSGEYMTANGQWGLNVLQTADHKMHHTFIE FT AVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIV FT VRDFATPEFWTAVGSTPENFSHLTVMSFITDNLIPVTIGNIIGGGLLVGLTYWVIYLRG FT NDHH" FT misc_feature complement(1068434..1069261) FT /gene="focA" FT /locus_tag="ROD_09731" FT /note="HMMPfam hit to PF01226, Formate/nitrite transporter, FT score 6.5e-176" FT /inference="protein motif:PFAM:PF01226" FT misc_feature complement(join(1068449..1068517,1068632..1068700, FT 1068734..1068802,1068860..1068928,1068986..1069054, FT 1069112..1069180)) FT /gene="focA" FT /locus_tag="ROD_09731" FT /note="6 probable transmembrane helices predicted for FT ROD09731 by TMHMM2.0 at aa 35-57, 77-99, 119-141, 161-183, FT 195-217 and 256-278" FT misc_feature complement(1068749..1068781) FT /note="PS01006 Formate and nitrite transporters signature FT 2." FT /inference="protein motif:Prosite:PS01006" FT misc_feature complement(1069007..1069036) FT /note="PS01005 Formate and nitrite transporters signature FT 1." FT /inference="protein motif:Prosite:PS01005" FT CDS complement(1069688..1071448) FT /transl_table=11 FT /locus_tag="ROD_09741" FT /product="putative fatty acid binding protein" FT /db_xref="InterPro:IPR003776" FT /db_xref="UniProtKB/TrEMBL:D2TS42" FT /protein_id="CBG87753.1" FT /translation="MTQTFIPGKDAALEDSIARFQQKLLDLGFHIEEASWLNPVPNVWS FT VHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVHYP FT NEKWFPLNENDDVPEGLLDERLRAFYDPENELTGSMLIDLQSGNEERGVCGLPFTRQSD FT NQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPEIPNE FT VLARYPSVVESIAKLEAEGFPIFAYDGSLGGKYPVICVVLFNPANGTCFASFGAHPDFG FT VALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEQTNLETHFIDSSGLISWDLFKQDAD FT YPFADWSFSGTTEEEFATLMAIFHAEDKEVYIADYEHLGVYACRIIVPGMSDIYPAEDL FT WLANNSMGSHLRETLLSLPGSSWDKEDYLNLIEQLDEEGFDDFTRVRELLGLATGQDNG FT WYTLRIGELKAMLALAGGDQEQALIWTEWTMEFNTSVFTPERANYYRCLQTLLLLSQEE FT EREPLQYLNAFVRMYGADAVEAASAALSGEAPFYGLQPVDSDLQAFAAHQSLLKAYEKL FT QRAKAAFWSK" FT misc_feature complement(1070273..1071388) FT /locus_tag="ROD_09741" FT /note="HMMPfam hit to PF02624, YcaO-like, score 5.2e-163" FT /inference="protein motif:PFAM:PF02624" FT CDS 1071585..1072277 FT /transl_table=11 FT /locus_tag="ROD_09751" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR007353" FT /db_xref="InterPro:IPR023090" FT /db_xref="UniProtKB/TrEMBL:D2TS43" FT /protein_id="CBG87754.1" FT /translation="MKAFDLHRMALDKVPLEFLGEVALRSLYTFVLVYLFLKLTGRRGV FT RQMSLFEVLIILTLGSAAGDVAFYDDVPMLPVLVVFITLALLYRLVMWLMARSEKLEDL FT LEGKPVVIIEDGELAWEKLNRSNMTEFEFFMELRLNGVEQLGQVRLAILESNGQISVYF FT FEEENVKPGLSILPKYCTQRYKIAPDVGDYACVRCSEVVTLQAGESQPCPRCKNPEWSK FT ASEAKRVL" FT misc_feature join(1071627..1071695,1071732..1071791,1071804..1071857) FT /locus_tag="ROD_09751" FT /note="3 probable transmembrane helices predicted for FT ROD09751 by TMHMM2.0 at aa 15-37, 50-69 and 74-91" FT misc_feature 1071885..1072193 FT /locus_tag="ROD_09751" FT /note="HMMPfam hit to PF04239, Protein of unknown function FT DUF421, score 2e-32" FT /inference="protein motif:PFAM:PF04239" FT CDS 1072475..1073563 FT /transl_table=11 FT /gene="serC" FT /locus_tag="ROD_09761" FT /product="phosphoserine aminotransferase" FT /EC_number="2.6.1.52" FT /db_xref="GOA:D2TS44" FT /db_xref="InterPro:IPR000192" FT /db_xref="InterPro:IPR003248" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015422" FT /db_xref="InterPro:IPR015424" FT /db_xref="InterPro:IPR020578" FT /db_xref="InterPro:IPR022278" FT /db_xref="UniProtKB/TrEMBL:D2TS44" FT /protein_id="CBG87755.1" FT /translation="MAQVFNFSSGPAMLPADVLKVAQKELCDWNGLGTSVMEVSHRGKE FT FIQVAEEAEQDFRDLLNIPSSYKVLFCHGGGRGQFSALPLNLLGDKTTADYVDAGYWAA FT SAVKEAKKYCTPHVIDAKVTVDGLRAVKPMSEWQLLDDAAFMHYCPNETIDGIAINETP FT NFSSDVVVTADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKAHESC FT PSILDYSVLNDNDSMFNTPPTFAWYLSGLVFKWLKANGGVEAMNQINQQKAGLLYSVID FT NSDFYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYN FT AMPLEGVKALTEFMADFERRHG" FT misc_feature 1072484..1073524 FT /gene="serC" FT /locus_tag="ROD_09761" FT /note="HMMPfam hit to PF00266, Aminotransferase, class V, FT score 5.1e-83" FT /inference="protein motif:PFAM:PF00266" FT misc_feature 1073039..1073098 FT /note="PS00595 Aminotransferases class-V FT pyridoxal-phosphate attachment site." FT /inference="protein motif:Prosite:PS00595" FT CDS 1073636..1074919 FT /transl_table=11 FT /gene="aroA" FT /locus_tag="ROD_09771" FT /product="3-phosphoshikimate 1-carboxyvinyltransferase" FT /EC_number="2.5.1.19" FT /db_xref="GOA:D2TS45" FT /db_xref="InterPro:IPR001986" FT /db_xref="InterPro:IPR006264" FT /db_xref="InterPro:IPR013792" FT /db_xref="InterPro:IPR023193" FT /db_xref="UniProtKB/TrEMBL:D2TS45" FT /protein_id="CBG87756.1" FT /translation="MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGTTVLTNLL FT DSDDVRHMLNALSALGIACTLSADRTRCEITGNGGALQAQGALELFLGNAGTAMRPLAA FT ALCLGENDIVLTGEPRMKERPIGHLVEALRQGGAKIDYLEQENYPPLRLRGGFTGGEVT FT VDGSVSSQFLTALLMTAPLAVQDTTISIKGELVSKPYIDITLNLMKTFGVEIENQRYQR FT FVVKGGQQYQSPGVYLVEGDASSASYFLAAGAIKGGTVKVTGIGRNSMQGDIRFADVLE FT KMGATVTWGDDFIACTRGELKAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVK FT ETDRLFAMATELRKVGAEVEEGHDYIRITPPAKLQFAEIGTYNDHRMAMCFSLVALSDT FT PVTILDPKCTAKTFPDYFEQLARISTPA" FT misc_feature 1073651..1074895 FT /gene="aroA" FT /locus_tag="ROD_09771" FT /note="HMMPfam hit to PF00275, 3-phosphoshikimate FT 1-carboxyvinyltransferase, score 6.5e-230" FT /inference="protein motif:PFAM:PF00275" FT misc_feature 1073795..1073827 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1073903..1073947 FT /note="PS00104 EPSP synthase signature 1." FT /inference="protein motif:Prosite:PS00104" FT misc_feature 1074647..1074703 FT /note="PS00885 EPSP synthase signature 2." FT /inference="protein motif:Prosite:PS00885" FT CDS 1075257..1075940 FT /transl_table=11 FT /gene="cmk" FT /locus_tag="ROD_09781" FT /product="cytidylate kinase" FT /EC_number="2.7.4.14" FT /db_xref="GOA:D2TS46" FT /db_xref="InterPro:IPR003136" FT /db_xref="InterPro:IPR011994" FT /db_xref="UniProtKB/TrEMBL:D2TS46" FT /protein_id="CBG87757.1" FT /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLAL FT AALHHHVDVASEDALVPLATHLDVRFVATNGNLEVILEGEDVSGEIRTQEVANAASQVA FT AFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQ FT EKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTRLSIEQVIEKALQYARQ FT KLALA" FT misc_feature 1075437..1075910 FT /gene="cmk" FT /locus_tag="ROD_09781" FT /note="HMMPfam hit to PF02224, Cytidylate kinase region, FT score 5.8e-93" FT /inference="protein motif:PFAM:PF02224" FT CDS 1076053..1077726 FT /transl_table=11 FT /gene="rpsA" FT /locus_tag="ROD_09791" FT /product="30S ribosomal protein S1" FT /db_xref="GOA:D2TS47" FT /db_xref="InterPro:IPR000110" FT /db_xref="InterPro:IPR003029" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR016027" FT /db_xref="InterPro:IPR022967" FT /db_xref="UniProtKB/TrEMBL:D2TS47" FT /protein_id="CBG87758.1" FT /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKSE FT SAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYED FT AETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKR FT NNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITD FT MAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLT FT GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR FT RISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWN FT VAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVNGKV FT TAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISL FT SVRAKDEADEKDAIATVNKQEEANFSNNAMAEAFKAAKGE" FT misc_feature 1076101..1076313 FT /gene="rpsA" FT /locus_tag="ROD_09791" FT /note="HMMPfam hit to PF00575, S1, RNA binding, score FT 1.5e-12" FT /inference="protein motif:PFAM:PF00575" FT misc_feature 1076353..1076565 FT /gene="rpsA" FT /locus_tag="ROD_09791" FT /note="HMMPfam hit to PF00575, S1, RNA binding, score FT 1.2e-17" FT /inference="protein motif:PFAM:PF00575" FT misc_feature 1076614..1076832 FT /gene="rpsA" FT /locus_tag="ROD_09791" FT /note="HMMPfam hit to PF00575, S1, RNA binding, score FT 7.1e-32" FT /inference="protein motif:PFAM:PF00575" FT misc_feature 1076869..1077093 FT /gene="rpsA" FT /locus_tag="ROD_09791" FT /note="HMMPfam hit to PF00575, S1, RNA binding, score FT 4.2e-30" FT /inference="protein motif:PFAM:PF00575" FT misc_feature 1077130..1077354 FT /gene="rpsA" FT /locus_tag="ROD_09791" FT /note="HMMPfam hit to PF00575, S1, RNA binding, score FT 5.8e-26" FT /inference="protein motif:PFAM:PF00575" FT misc_feature 1077391..1077612 FT /gene="rpsA" FT /locus_tag="ROD_09791" FT /note="HMMPfam hit to PF00575, S1, RNA binding, score FT 3.9e-25" FT /inference="protein motif:PFAM:PF00575" FT CDS 1077881..1078165 FT /transl_table=11 FT /gene="ihfB" FT /locus_tag="ROD_09801" FT /product="integration host factor beta-subunit (IHF-beta)" FT /db_xref="GOA:D2TS48" FT /db_xref="InterPro:IPR000119" FT /db_xref="InterPro:IPR005685" FT /db_xref="InterPro:IPR010992" FT /db_xref="InterPro:IPR020816" FT /db_xref="InterPro:IPR023630" FT /db_xref="UniProtKB/TrEMBL:D2TS48" FT /protein_id="CBG87759.1" FT /translation="MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEI FT RGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG" FT misc_feature 1077881..1078153 FT /gene="ihfB" FT /locus_tag="ROD_09801" FT /note="HMMPfam hit to PF00216, Histone-like bacterial FT DNA-binding protein, score 9.2e-47" FT /inference="protein motif:PFAM:PF00216" FT misc_feature 1078019..1078078 FT /note="PS00045 Bacterial histone-like DNA-binding proteins FT signature." FT /inference="protein motif:Prosite:PS00045" FT CDS 1078366..1080630 FT /transl_table=11 FT /locus_tag="ROD_09811" FT /product="putative competence-related protein" FT /db_xref="GOA:D2TS49" FT /db_xref="InterPro:IPR001279" FT /db_xref="InterPro:IPR004477" FT /db_xref="InterPro:IPR004797" FT /db_xref="UniProtKB/TrEMBL:D2TS49" FT /protein_id="CBG87760.1" FT /translation="MKLTTVSLCALGGIFPLILLPELPGSFVIVSLFALACLLSLFPHQ FT RIQLAGLIVLFFLWGVMAAKQSLWAGNTLTAKMQDAIVEITSTDNMTTHVGRITHLQGQ FT RLIPAVGVMLYDQYLPAAPCAGQRWAMRLKVRAVHGQLNEGRFDRQRYALAQHQPLSGR FT FLQASLIDRECSLRARYLASLRLTLADYPWQQVILGLGMGERLSVAKEVKAIMRDTGTA FT HLMAISGLHIAFTALLAAALLRGAQFLLPVSRIRWQHPLISGLLCATFYAWLTGLQPPA FT LRTIIALAVWGALKLSGRQWSGWSVWCCCLAAIVIVDPVAILSQSLWLSAFAVAALLFW FT YQWFPCPGWPLPRAGRLLLQLIHLQLGITLLLLPLQIALFHGVSLTSFMANLFAVPLVT FT FVSVPLILAGMVAHITGPLVVESGLWFLADRSLAILFWGLEGLPHGWINVDVRWQWLTI FT APWLLLIGWRFSAWRTAPGLCLALLVLLSWPLWRPQRSDAWQVHMLDVGQGLAMVIARN FT GKALLYDTGPAWPEGDSAQQTIIPWLRWHDLQPEGIILSHEHLDHRGGLRSLQSTWPTL FT WVRSPLGWRNHLPCQRGETWQWQGLRFSAHWPLKDDRRQGNNRSCVVKIDDGQHSILLT FT GDIESPAEQKMLSYYWRHLPATVIQVPHHGSNTSSSLALIQRVNGELALASASRYNAWR FT LPSWKVRQRYRRQGYQWRDTPHQGQITLDFSAQGWRVISLREQILPRWYHQWFGVPDDN FT G" FT misc_feature join(1078423..1078491,1078510..1078578,1079026..1079094, FT 1079155..1079223,1079266..1079334,1079347..1079403, FT 1079446..1079514,1079533..1079601,1079644..1079712, FT 1079770..1079838) FT /locus_tag="ROD_09811" FT /note="10 probable transmembrane helices predicted for FT ROD09811 by TMHMM2.0 at aa 20-42, 49-71, 221-243, 264-286, FT 301-323, 328-346, 361-383, 390-412, 427-449 and 469-491" FT misc_feature 1078444..1078476 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1078963..1079775 FT /locus_tag="ROD_09811" FT /note="HMMPfam hit to PF03772, ComEC/Rec2-related protein, FT score 1e-73" FT /inference="protein motif:PFAM:PF03772" FT misc_feature 1079887..1080432 FT /locus_tag="ROD_09811" FT /note="HMMPfam hit to PF00753, Beta-lactamase-like, score FT 3e-14" FT /inference="protein motif:PFAM:PF00753" FT CDS 1080667..1082415 FT /transl_table=11 FT /gene="msbA" FT /locus_tag="ROD_09821" FT /product="lipid A export ATP-binding/permease protein" FT /EC_number="3.6.3.-" FT /db_xref="GOA:D2TS50" FT /db_xref="InterPro:IPR001140" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR011527" FT /db_xref="InterPro:IPR011917" FT /db_xref="InterPro:IPR017871" FT /db_xref="InterPro:IPR017940" FT /db_xref="UniProtKB/TrEMBL:D2TS50" FT /protein_id="CBG87761.1" FT /translation="MHNDKDLSTWQTFRRLWPTIAPFKSGLIVAGVALILNAASDTFML FT SLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRL FT FGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSSALITVVREGASIIGLFAMMFYY FT SWQLSIILVVLAPIVSIAIRVVSKRFRAISKNMQNTMGQVTTSAEQMLKGHKEVLIFGG FT QEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMESLTA FT GTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGTRVIERATG FT ELEFRNVTFTYPGREIPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGE FT ILMDGHDLREYTLSSLRNQVALVSQNVHLFNDTVANNIAYARNEHYTREQIEEAARMAY FT AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER FT AIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGVIVERGTHSELLEHRGVYAQLH FT KMQFGQ" FT misc_feature 1080733..1081560 FT /gene="msbA" FT /locus_tag="ROD_09821" FT /note="HMMPfam hit to PF00664, ABC transporter, FT transmembrane region, score 2.3e-67" FT /inference="protein motif:PFAM:PF00664" FT misc_feature join(1080745..1080813,1080850..1080918,1081156..1081224, FT 1081399..1081467) FT /gene="msbA" FT /locus_tag="ROD_09821" FT /note="4 probable transmembrane helices predicted for FT ROD09821 by TMHMM2.0 at aa 27-49, 62-84, 164-186 and FT 245-267" FT misc_feature 1081771..1082328 FT /gene="msbA" FT /locus_tag="ROD_09821" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 1e-64" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 1081792..1081815 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 1082107..1082151 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT CDS 1082412..1083389 FT /transl_table=11 FT /gene="lpxK" FT /locus_tag="ROD_09831" FT /product="tetraacyldisaccharide 4'-kinase (lipid A FT 4'-kinase)" FT /EC_number="2.7.1.130" FT /db_xref="GOA:D2TS51" FT /db_xref="InterPro:IPR003758" FT /db_xref="UniProtKB/TrEMBL:D2TS51" FT /protein_id="CBG87762.1" FT /translation="MIARIWSGESPLWRLLLPLSWLYGLVSGGIRLCYRLGIKRAWRAP FT VPVVVVGNLTAGGNGKTPVVIWLVEQLTLRGLRVGVVSRGYGGKAASYPLLLSEQTTTA FT EAGDEPVLIYQRTGASVAVAPNRAEAVSALLAQHNVQIVVTDDGLQHYRLARDVEIVVV FT DGVRRFGNGWWLPAGPMRERAGRLKSVDAVITNGGVPQAGEIPMRLAPGQAVNLLTGER FT CNVAQLQNVVAMAGIGHPPRFFATLEACGVHPQKCVPLADHQALSAHDVRALLNAGQTL FT LMTEKDAVKCRAFAEDNWWYLPVDAHLSGDEPEALLKKLTSLAR" FT misc_feature 1082442..1083386 FT /gene="lpxK" FT /locus_tag="ROD_09831" FT /note="HMMPfam hit to PF02606, Tetraacyldisaccharide-1-P FT 4'-kinase, score 7.5e-175" FT /inference="protein motif:PFAM:PF02606" FT misc_feature 1082445..1082513 FT /gene="lpxK" FT /locus_tag="ROD_09831" FT /note="1 probable transmembrane helix predicted for FT ROD09831 by TMHMM2.0 at aa 12-34" FT CDS 1083431..1084663 FT /transl_table=11 FT /locus_tag="ROD_09841" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR009351" FT /db_xref="UniProtKB/TrEMBL:D2TS52" FT /protein_id="CBG87763.1" FT /translation="MSLPYLSLKAARHLHLAAQGLLKKPRRRALESDILPTISRMSLLQ FT IDTINIVARSPYLVLFSRLGAYPPHWLDAALSRGELMEYWAHEACFLPRSDFPLIRHRM FT LSLENMGWKFSAAWMAEHADEIEQLLQHIQQNGPVRSADFAHPRKGAGGWWEWKPQKRH FT LEGLFTAGKLMVVERRNFQRVYDVTQRVMPHWDDERDLLPRAQAELLMLDNSARSLGIF FT REPWLADYYRLKRLALPLWRESRAAQGKIVPVEVETLGALWLHADLLPLLEQAQAGTLS FT ATHSAVLSPFDPVVWDRKRAEQLFHFSYRLECYTPAPKRQFGYFVLPLLHRGQLVGRMD FT AKMHRKTGVLEIISLYLEEDVKVGAALQNGLRQAISDFARWQQASRVTIGRCPAQLFAD FT CRQGWEIDAAQ" FT misc_feature 1083440..1084621 FT /locus_tag="ROD_09841" FT /note="HMMPfam hit to PF06224, Protein of unknown function FT DUF1006, score 4.6e-230" FT /inference="protein motif:PFAM:PF06224" FT CDS 1084715..1084897 FT /transl_table=11 FT /locus_tag="ROD_09851" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR005651" FT /db_xref="UniProtKB/TrEMBL:D2TS53" FT /protein_id="CBG87764.1" FT /translation="MDHRLLEIIACPVCNGKLWYNQEKQELICKPDNLAFPLRDGIPVL FT LETEARVLTADERKS" FT misc_feature 1084718..1084837 FT /locus_tag="ROD_09851" FT /note="HMMPfam hit to PF03966, Protein of unknown function FT DUF343, score 1.9e-15" FT /inference="protein motif:PFAM:PF03966" FT CDS 1084894..1085640 FT /transl_table=11 FT /gene="kdsB" FT /locus_tag="ROD_09861" FT /product="3-deoxy-manno-octulosonate cytidylyltransferase" FT /EC_number="2.7.7.38" FT /db_xref="GOA:D2TS54" FT /db_xref="InterPro:IPR003329" FT /db_xref="InterPro:IPR004528" FT /db_xref="UniProtKB/TrEMBL:D2TS54" FT /protein_id="CBG87765.1" FT /translation="MSFVVIIPARYASTRLPGKPLLDINGKPMIVHVLERARESGAERI FT IVATDHEEVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEPMI FT PAVIIRQVAENLAQRQVGMATLAVPIHGAEEAFNPNAVKVVLDAEGYALYFSRATIPWD FT RDRFAKSLETVGDTFLRHLGIYGYRAGFIRRYVNWQPSPLENIEMLEQLRVLWYGEKIH FT VAVAKEVPGTGVDTAEDLERVRAEMR" FT misc_feature 1084903..1085556 FT /gene="kdsB" FT /locus_tag="ROD_09861" FT /note="HMMPfam hit to PF02348, Acylneuraminate FT cytidylyltransferase, score 1.2e-97" FT /inference="protein motif:PFAM:PF02348" FT CDS 1085792..1086685 FT /transl_table=11 FT /locus_tag="ROD_09871" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TS55" FT /db_xref="InterPro:IPR011009" FT /db_xref="UniProtKB/TrEMBL:D2TS55" FT /protein_id="CBG87766.1" FT /translation="MEQLRAELSHLLGEKLSRIECVNEKADTTLWSLYDSQGNPMPLMA FT RSFTTPGIAQQLAWKTTMLARSGTVRMPVIYGVMTHDDYPGPDVLLLERLRGVPVEAPA FT RTPQRWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENIWPSWYRQRVEVLWSTLNQFN FT NTGLTMQDKRILFRTRECLPTLFEGFNDNCVLVHGNFSLRSMLKDARSDQLLAMVGPGV FT MLWAPREYELFCLMDNALAEGLLWHYLQRAPVAESFIWRRWLYVLWDEVAQLVNTGRFN FT RAHFDLAAKSLLPWLA" FT CDS complement(1086750..1087517) FT /transl_table=11 FT /locus_tag="ROD_09881" FT /product="putative exported protein" FT /db_xref="InterPro:IPR003848" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:D2TS56" FT /protein_id="CBG87767.1" FT /translation="MLFTLKKVVGGLLLPLPFLLLVMGVGLALLWFSRFQKTGKGLIAL FT SWLALLLLSLQPVADGLLRPIETRYPTWQATQKVDYIVVLGGGYTWNPQWAPSSNLLNN FT SLPRLNEGIRLWRANPGAKLIFTGARALTNPVSTAEAGARVAESLGVPRSDIIVLDRPK FT DTEEEAAAVKQTIGDTPFLLVTSASHLPRAMIFFQQAGTHPLPAPANQMAIDSPLNPWE FT RAIPSPYWLMHSDRVGYETLGRLWQWLKGVDNA" FT misc_feature complement(1086786..1087286) FT /locus_tag="ROD_09881" FT /note="HMMPfam hit to PF02698, Protein of unknown function FT DUF218, score 5.6e-46" FT /inference="protein motif:PFAM:PF02698" FT misc_feature complement(join(1087329..1087397,1087422..1087490)) FT /locus_tag="ROD_09881" FT /note="2 probable transmembrane helices predicted for FT ROD09881 by TMHMM2.0 at aa 10-32 and 41-63" FT sig_peptide complement(1087434..1087517) FT /locus_tag="ROD_09881" FT /note="Signal peptide predicted for ROD09881 by SignalP 2.0 FT HMM (Signal peptide probability 0.927) with cleavage site FT probability 0.391 between residues 28 and 29" FT CDS 1087652..1088464 FT /transl_table=11 FT /gene="smtA" FT /locus_tag="ROD_09891" FT /product="putative S-adenosylmethionine-dependent FT methyltransferase" FT /db_xref="GOA:D2TS57" FT /db_xref="InterPro:IPR013216" FT /db_xref="UniProtKB/TrEMBL:D2TS57" FT /protein_id="CBG87768.1" FT /translation="MRDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRLLATFGAQK FT LRVLDAGGGEGQTAIKMAERGHHVTLCDLSGEMIARAQQAAEAKGVSDDMHFIQCAAQD FT VASHLESPVDLILFHAVLEWVAEPVSVLETLWSVLRPGGALSLMFYNANGLLMHNMVAG FT NFDYVQAGMPKRKKRTLSPDYPREPEQVYQWLEQIGWQISGKTGVRVFHDYLREKHQQR FT DCYDMLLELETRYCRQEPWISLGRYIHVTALKSLSHEALPADARITYE" FT misc_feature 1087796..1088092 FT /gene="smtA" FT /locus_tag="ROD_09891" FT /note="HMMPfam hit to PF08241, Methyltransferase type 11, FT score 7.3e-19" FT /inference="protein motif:PFAM:PF08241" FT misc_feature 1088246..1088269 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 1088457..1089779 FT /transl_table=11 FT /gene="mukF" FT /locus_tag="ROD_09901" FT /product="chromosome partition protein" FT /db_xref="GOA:D2TS58" FT /db_xref="InterPro:IPR005582" FT /db_xref="UniProtKB/TrEMBL:D2TS58" FT /protein_id="CBG87769.1" FT /translation="MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDG FT EMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLT FT PLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAADEGGDEFHWHRNVYAPLKYS FT VAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTL FT EAAGDKLQANLLRIQDATLALNDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHV FT HKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTG FT ELPPDLEYEEFNEIREQLAAIIEEQLAVYKTKETPLDLGLVVREYLAQYPRARHFDVAR FT IVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY" FT misc_feature 1088457..1089776 FT /gene="mukF" FT /locus_tag="ROD_09901" FT /note="HMMPfam hit to PF03882, Prokaryotic chromosome FT segregation and condensation protein MukF, score 0" FT /inference="protein motif:PFAM:PF03882" FT CDS 1089787..1090464 FT /transl_table=11 FT /gene="mukE" FT /locus_tag="ROD_09911" FT /product="chromosome partition protein" FT /db_xref="GOA:D2TS59" FT /db_xref="InterPro:IPR007385" FT /db_xref="UniProtKB/TrEMBL:D2TS59" FT /protein_id="CBG87770.1" FT /translation="MPVKLAQALANPLFPALDSALRSGRHIGLDELDNHAFLMDFQDYL FT EEFYSRYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYLYLSPERLANEG FT IFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKMRSSLNRLRRLGMVWFMG FT HDSSKFRITESVFRFGADVRTGDDPREAQRRLIRDGEAMAVENHLQLNDETEENQPDSG FT EEE" FT misc_feature 1089787..1090461 FT /gene="mukE" FT /locus_tag="ROD_09911" FT /note="HMMPfam hit to PF04288, Prokaryotic chromosome FT segregation and condensation protein MukE, score 2.1e-164" FT /inference="protein motif:PFAM:PF04288" FT CDS 1090464..1094912 FT /transl_table=11 FT /gene="mukB" FT /locus_tag="ROD_09921" FT /product="chromosome partition protein" FT /db_xref="GOA:D2TS60" FT /db_xref="InterPro:IPR007406" FT /db_xref="InterPro:IPR012090" FT /db_xref="UniProtKB/TrEMBL:D2TS60" FT /protein_id="CBG87771.1" FT /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMA FT AFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVVGV FT RLQQVAGRDRKVDIKPFAIQGLPMSIQPTQLVTETLNERQARVLTLNELKDKLDEMEGV FT QFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLL FT PENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANER FT RIHLDKALELRRELYTSRKQLAAEQYKHVDMARELAEHNGAEGDLEADYQAASDHLNLV FT QTALRQQEKIERYDADLDELQIRLEEQNEVVAEAIERQEENEARAEAAELEVDELKSQL FT ADYQQALDVQQTRAIQYNQAIAALQRAKELCHLPDLTADSAAEWLETFQAKEQEATEKM FT LSLEQKMSVAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQRHLAEQVQP FT LRMRLSELEQRLREQQEAERLLAEFCKRQGKQFDIDELEALHQELEARIASLSDSVSSA FT HEQRMALRQEQEQLQSRIQHLMKRAPVWLAAQNSLSQLSEQCGEEFTSSQEVTEYLQQL FT LEREREAIVERDEVGARKNAVDEEIERLSQPGGAEDQRLNALAERFGGVLLSEIYDDVS FT LEDAPYFSALYGPSRHAIVVPDLSQIADQLEGLTDCPEDLYLIEGDPQSFDDSVFSVDE FT LEKAVVVKIADRQWRYSRFPSLPIFGRAARENRIESLHAEREGLSERFATLSFDVQKTQ FT RLHQAFSRFIGSHLSVAFDADPEAEIRQLNARRVELERALSAHENDNQQQRLQYEQAKE FT GVSALNRLLPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQHGNQLARLEPVVSVLQ FT SDPEQFEQLKEDYAYSQQTQRDARQQAFALSEVVQRRAHFSYSDSAEMLSGNSDLNEKL FT RQRLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDTKKELLTDLQRELQDIGVR FT ADSGAEERARMRRDELHAQLSNNRSRRNQLEKALTFCEAEMDNLTRKLRRLERDYFEMR FT EQVVTAKAGWCAVMRLVKDSGVERRLHRRELAYLSGDELRSMSDKALGALRLAVADNEH FT LRDVLRLSEDPKRPERKIQFFVAVYQHLRERIRQDIIRTDDPVEAIEQMEIELGRLTEE FT LTSREQKLAISSRSVANIIRKTIQREQNRIRQLNQGLQSVSFGQVNSVRLNVNVRETHA FT TLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLNPQIDMGQRTPQTIGEELLDYRNY FT LEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSILVMVVQSWEDEARRLRGKDISPCRL FT LFLDEAARLDARSIATLFELCERLQMQLIIAAPENISPEKGTTYKLVRKVFQNTEHVHV FT VGLRGFAPQPPESLPGTAEVS" FT misc_feature 1090464..1091144 FT /gene="mukB" FT /locus_tag="ROD_09921" FT /note="HMMPfam hit to PF04310, Prokaryotic chromosome FT segregation and condensation protein MukB, N-terminal, FT score 5.2e-187" FT /inference="protein motif:PFAM:PF04310" FT misc_feature 1090563..1090586 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 1095172..1099446 FT /transl_table=11 FT /locus_tag="ROD_09931" FT /product="intimin-like protein" FT /db_xref="GOA:D2TS61" FT /db_xref="InterPro:IPR003344" FT /db_xref="InterPro:IPR003535" FT /db_xref="InterPro:IPR008964" FT /db_xref="InterPro:IPR024519" FT /db_xref="UniProtKB/TrEMBL:D2TS61" FT /protein_id="CBG87772.1" FT /translation="MCWRIIYHLMVMLFFRSTHMRSKTRKLLACIQIVLQLAPPSSLIY FT LSSVFNANAEEITSSAEKEQGNPSDQNASSVAQTAVQAGSLLSSDNASDALGSAVVSAV FT TGKAASSAQEWLSQFGTARVNISTDEHFTLSDSELDLLVPLYNENENLLFTQLGGRRHD FT DRNIVNGGFGYRHFNDGWMWGTNVFYDRQVSGNQHQRLGLDTELRWDYLNVSANGYLRL FT SDWMSSSSYQDYDERVADGFDIRATGYLPAYPQLGANIIYEQYFGDSVGLFGDDEDDRQ FT KDPYAVTVGLNYTPVPLVTMGLNQKMGKSGENDTQVNLGLTWTPGVPLSAQLDPSQVAL FT RRTLQGGRLDLVDRNNNIVLEYRKQELISLALPAELEGAEQSKRPVTAKVKAKYGLDRI FT EWQGDSFFSHGGKITPGSNPEQVVMTLPVWVGSGSNSYTLSATAWDKKGNASAAERVNV FT TVNGIDVNTLLSATTVSPTKVPADGKTPATVSVTLKTSAGEAATGLASRLTAALTSSVT FT AVAKTEGTTPDKAPTMGAFTESGSGVYMATLTSGTTPDTLTIQPLIDGAIKLASAKLIE FT EATVMIPQLTTLDASGTSALASGSAPVTLTAHVTDQYGRALKDAVVNWSADNAQALLSA FT SQSSTDESGAAQIQVTSQNIITTVVTAQLQGGNALSTSPLTFTADRSTAKVVTIDSNKK FT QVVANNNDTGRVTALVMDGYSHPLSGVTVNWKVEKTDNTPVTTSTSTTDSSGIAVLTLK FT ASKTGTVTVSAEVNGTMQETDPITFVADSSTQSVSVLMADKPQATANGTDKITYTATVT FT DMQGNVVQGATVNWSADSADAKLSSTRTTSGADGTSQITVTSIKAGDVVVTAQTLEATA FT TAADKVTFVADAATAKVNTITSDKPTALANGSDAITLSATIADANGNPLGGMDVNWQAS FT PTTGKLSANSSKTDANGVARVALASDNVATYTVAASINGTVKSMENLRFTADSSTAQIT FT SLTADKTTGIVADRDTVTLTALVVDAQQHPVSGVTVNWTSSEAASRLSVNSSVTGDDGT FT ATVAFSSLKAGAIDVTATTGGSSKIQTLQVIGNVATAKVTGIVADKPQAVADGAETITW FT TATVTDANGNILTGATLNWSSSLSGVTLTPASSDTDAEGKATMKGTSLKSGEVKVTATP FT VVNAGGQKTGGDTKFIGDTKTARLISLRPNMINPVINSTGVTYNAVVNDANDNPVEGLT FT VAWTTNLNTLSAQETTTDSSGNTAVKLKGSTVGIATVTATANGTNLSNNEVSFVDTLYV FT DWNITGNSSSYTGNDAVSTTTASVGFVVIGETQGPTSLIWNSHVGATTRLTVPMTTDNG FT ETVNVIFKGQRSTGGCGRVEFNNAISCYNSGTSAPVINFSADDNPTLSPGRYTGRITFK FT GTEWHNDNNLLVYDITVSLTVQ" FT sig_peptide 1095172..1095333 FT /locus_tag="ROD_09931" FT /note="Signal peptide predicted for ROD09931 by SignalP 2.0 FT HMM (Signal peptide probability 0.816) with cleavage site FT probability 0.810 between residues 54 and 55" FT misc_feature 1096921..1097196 FT /locus_tag="ROD_09931" FT /note="HMMPfam hit to PF02369, Bacterial Ig-like, group 1, FT score 1.6e-12" FT /inference="protein motif:PFAM:PF02369" FT misc_feature 1097203..1097505 FT /locus_tag="ROD_09931" FT /note="HMMPfam hit to PF02369, Bacterial Ig-like, group 1, FT score 3.3e-11" FT /inference="protein motif:PFAM:PF02369" FT misc_feature 1097506..1097808 FT /locus_tag="ROD_09931" FT /note="HMMPfam hit to PF02369, Bacterial Ig-like, group 1, FT score 4e-10" FT /inference="protein motif:PFAM:PF02369" FT misc_feature 1097809..1098108 FT /locus_tag="ROD_09931" FT /note="HMMPfam hit to PF02369, Bacterial Ig-like, group 1, FT score 7.9e-18" FT /inference="protein motif:PFAM:PF02369" FT misc_feature 1098109..1098405 FT /locus_tag="ROD_09931" FT /note="HMMPfam hit to PF02369, Bacterial Ig-like, group 1, FT score 8.6e-14" FT /inference="protein motif:PFAM:PF02369" FT misc_feature 1098406..1098714 FT /locus_tag="ROD_09931" FT /note="HMMPfam hit to PF02369, Bacterial Ig-like, group 1, FT score 4.3e-09" FT /inference="protein motif:PFAM:PF02369" FT misc_feature 1098727..1099005 FT /locus_tag="ROD_09931" FT /note="HMMPfam hit to PF02369, Bacterial Ig-like, group 1, FT score 1.9e-10" FT /inference="protein motif:PFAM:PF02369" FT CDS 1099570..1101444 FT /transl_table=11 FT /locus_tag="ROD_09941" FT /product="putative exported protein" FT /db_xref="GOA:D2TS62" FT /db_xref="InterPro:IPR002477" FT /db_xref="InterPro:IPR005490" FT /db_xref="UniProtKB/TrEMBL:D2TS62" FT /protein_id="CBG87773.1" FT /translation="MKKIPRIMGMSFKNRGQGMLLKKNRGRQLSALSLCLVTFAPLFTA FT QADEPEIVPSDSSAIMGAQPTSLSQPLEQSPVTGIMAGIKPLPEGIDIGSVRQQLLTGL FT PSGYTPAYMDQLTLLYAAREMKPMWENRDAVRAFQQQLAEVAIAGFQPQFTRWVELLTD FT PAVSGQARDVVLSDAMMGYLQFVAGIPVNGNRWLYSNKPYKLATPALSVINQWQLALDN FT GELPRFIASLAPAHPQYARMHQSLLALVGDSRPWPQLRSAATLRPGQWSSDVPALREIL FT KRSGMLDGGPKIALPGDDAQNVVVSPSAPVKEKQAAVVSNKPAAYDRELVAAVKQFQAW FT QGLGADGAIGPATRYWMNVTPAQRAGGLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQ FT NGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKLWNDPGYLER FT HGYTVMRGWNSKDAIDPWQVDWSTITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYL FT HDTPNHTLFSKDARALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQGNTRYVTIR FT QTIPVNLYYLTAFVGADGRTQYRTDIYNYDLTARSSAQIVEKAEQLIR" FT sig_peptide 1099570..1099710 FT /locus_tag="ROD_09941" FT /note="Signal peptide predicted for ROD09941 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.992 between residues 47 and 48" FT misc_feature 1100545..1100652 FT /locus_tag="ROD_09941" FT /note="HMMPfam hit to PF01471, Peptidoglycan binding-like, FT score 8e-08" FT /inference="protein motif:PFAM:PF01471" FT misc_feature 1100851..1100871 FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT /inference="protein motif:Prosite:PS00092" FT misc_feature 1101310..1101357 FT /note="PS00225 Crystallins beta and gamma 'Greek key' motif FT signature." FT /inference="protein motif:Prosite:PS00225" FT CDS 1101622..1102170 FT /transl_table=11 FT /locus_tag="ROD_09951" FT /product="putative exported protein" FT /db_xref="InterPro:IPR006311" FT /db_xref="InterPro:IPR009045" FT /db_xref="InterPro:IPR010275" FT /db_xref="UniProtKB/TrEMBL:D2TS63" FT /protein_id="CBG87774.1" FT /translation="MDNFDANRRKLLALGGAALGAAILPVPAFATLSTPRPRILTLNNL FT HTGETIKAEFFDGRAYIQDELAKLNHFFRDYRANKVKSIDPGLFDQLFRLQGLLGTRRP FT VQLISGYRSLDTNNELRAHSRGVAKKSYHTKGQAMDFHIEGVSLSHIRKAALSMRAGGV FT GYYPRSNFVHIDTGPVRHW" FT sig_peptide 1101622..1101711 FT /locus_tag="ROD_09951" FT /note="Signal peptide predicted for ROD09951 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.998 between residues 30 and 31" FT misc_feature 1101655..1101723 FT /locus_tag="ROD_09951" FT /note="1 probable transmembrane helix predicted for FT ROD09951 by TMHMM2.0 at aa 12-34" FT misc_feature 1101715..1102167 FT /locus_tag="ROD_09951" FT /note="HMMPfam hit to PF05951, Protein of unknown function FT DUF882, bacterial, score 1.5e-106" FT /inference="protein motif:PFAM:PF05951" FT CDS 1102190..1102837 FT /transl_table=11 FT /locus_tag="ROD_09961" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TS64" FT /db_xref="InterPro:IPR001279" FT /db_xref="UniProtKB/TrEMBL:D2TS64" FT /protein_id="CBG87775.1" FT /translation="MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDAS FT GVTLMQILLTHGHLDHVGAAAELAAHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQP FT LTPDRWLEEGESVNVGNVTLQVLHCPGHTPGHIVFFDDRSRLLISGDVIFKGGVGRSDF FT PRGDHSQLIDSIKSKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQDEMPVW" FT misc_feature 1102223..1102765 FT /locus_tag="ROD_09961" FT /note="HMMPfam hit to PF00753, Beta-lactamase-like, score FT 1.1e-38" FT /inference="protein motif:PFAM:PF00753" FT CDS complement(1102922..1104112) FT /transl_table=11 FT /gene="aspC" FT /locus_tag="ROD_09971" FT /product="aspartate aminotransferase" FT /EC_number="2.6.1.1" FT /db_xref="GOA:D2TS65" FT /db_xref="InterPro:IPR000796" FT /db_xref="InterPro:IPR004838" FT /db_xref="InterPro:IPR004839" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015424" FT /db_xref="UniProtKB/TrEMBL:D2TS65" FT /protein_id="CBG87776.1" FT /translation="MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTPV FT LTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALVNEKRARTAQTPGGT FT GALRVAADFLAKNTAVKRVWVSNPSWPNHKSVFSSAGLEVREYAYYDAENHALDFDALL FT NSLSEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLAVDKGWLPLFDFAYQGFARGLE FT EDAEGLRAFAALHKELIVASSYSKNFGLYNERVGACTLVATDAETVDRAFSQMKSVIRA FT NYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRLLFVNTLQEKGANRDFSF FT IIQQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL" FT misc_feature complement(1102937..1104037) FT /gene="aspC" FT /locus_tag="ROD_09971" FT /note="HMMPfam hit to PF00155, Aminotransferase, class I FT and II, score 2.9e-142" FT /inference="protein motif:PFAM:PF00155" FT misc_feature complement(1103345..1103386) FT /note="PS00105 Aminotransferases class-I FT pyridoxal-phosphate attachment site." FT /inference="protein motif:Prosite:PS00105" FT CDS complement(1104296..1105420) FT /transl_table=11 FT /gene="ompF" FT /locus_tag="ROD_09981" FT /product="outer membrane protein F" FT /db_xref="GOA:D2TS66" FT /db_xref="InterPro:IPR001702" FT /db_xref="InterPro:IPR001897" FT /db_xref="InterPro:IPR013793" FT /db_xref="InterPro:IPR023614" FT /db_xref="UniProtKB/TrEMBL:D2TS66" FT /protein_id="CBG87777.1" FT /translation="MMKRNILAVVIPALMAAGAANAAEIYNKDGNKLDLYGKAVGLHYF FT SKGNGENSYAGDGDQTYARLGFKGETQINDQLTGYGQWEYQFQGNNSEGGSDAQDGNKT FT RLAFAGLKFGDAGSLDYGRNYGIVYDALGYTDMLPEFGGDTAYSDNFFVGRVGGVATYR FT NSNFFGLVEGLNFGVQYLGKNERASSYDVDPLDPSDNNFSDVRRSNGDGWGGSLSYEFE FT GFGIVGAYGAADRTNAQTNPALRGQGEKAEQWATGLKYDANNLYLAANYGETRNATPIS FT GGFANKTQDILLVAQYQFDFGLRPSIAYTKSKAKDVEGVGSEDLVNYVEVGATYYFNKN FT MSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF" FT misc_feature complement(1104299..1105339) FT /gene="ompF" FT /locus_tag="ROD_09981" FT /note="HMMPfam hit to PF00267, Porin, Gram-negative type, FT score 2e-189" FT /inference="protein motif:PFAM:PF00267" FT misc_feature complement(1104386..1104436) FT /note="PS00576 General diffusion Gram-negative porins FT signature." FT /inference="protein motif:Prosite:PS00576" FT misc_feature complement(1105343..1105402) FT /gene="ompF" FT /locus_tag="ROD_09981" FT /note="1 probable transmembrane helix predicted for FT ROD09981 by TMHMM2.0 at aa 7-26" FT sig_peptide complement(1105355..1105420) FT /gene="ompF" FT /locus_tag="ROD_09981" FT /note="Signal peptide predicted for ROD09981 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT CDS complement(1106006..1107406) FT /transl_table=11 FT /gene="asnS" FT /locus_tag="ROD_09991" FT /product="asparaginyl-tRNA synthetase" FT /db_xref="GOA:D2TS67" FT /db_xref="InterPro:IPR002312" FT /db_xref="InterPro:IPR004364" FT /db_xref="InterPro:IPR004365" FT /db_xref="InterPro:IPR004522" FT /db_xref="InterPro:IPR006195" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR016027" FT /db_xref="InterPro:IPR018150" FT /db_xref="UniProtKB/TrEMBL:D2TS67" FT /protein_id="CBG87778.1" FT /translation="MSVVPVADVLQGRVDVDSEVTVRGWVRTRRDSKAGISFLAVYDGS FT CFDPVQAVINNSLPNYNEEVLRLTTGCSVIVTGKVVASPGQGQSFEIQATHVEVSGWVE FT DPDTYPMAAKRHSIEYLREVAHLRPRTNMIGAVARVRHTLAQALHRFFDEQGFFWVSTP FT LITASDTEGAGEMFRVSTLDLENLPRNEQGKVDFDKDFFGKESFLTVSGQLNGETYACA FT LSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAALAEAMLKYAFNAVLTER FT ADDMKFFAERVDKEAISRLERFIAADFAQVDYTDAVTILENCGKTFENPVYWGVDLSSE FT HERYLAEEHFKAPVVVKNYPKDIKAFYMRLNNDGKTVAAMDVLAPGIGEIIGGSQREER FT LDVLDARMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFP FT RTPRNASF" FT misc_feature complement(1106021..1107058) FT /gene="asnS" FT /locus_tag="ROD_09991" FT /note="HMMPfam hit to PF00152, Aminoacyl-tRNA synthetase, FT class II (D, K and N), score 3.2e-77" FT /inference="protein motif:PFAM:PF00152" FT misc_feature complement(1106075..1106104) FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT /inference="protein motif:Prosite:PS00339" FT misc_feature complement(1106654..1106710) FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT /inference="protein motif:Prosite:PS00179" FT misc_feature complement(1107107..1107349) FT /gene="asnS" FT /locus_tag="ROD_09991" FT /note="HMMPfam hit to PF01336, Nucleic acid binding, FT OB-fold, tRNA/helicase-type, score 9.2e-19" FT /inference="protein motif:PFAM:PF01336" FT CDS complement(1107571..1108773) FT /transl_table=11 FT /gene="pncB" FT /locus_tag="ROD_10001" FT /product="nicotinate phosphoribosyltransferase" FT /EC_number="2.4.2.11" FT /db_xref="GOA:D2TS68" FT /db_xref="InterPro:IPR002638" FT /db_xref="InterPro:IPR006406" FT /db_xref="InterPro:IPR007229" FT /db_xref="InterPro:IPR015977" FT /db_xref="UniProtKB/TrEMBL:D2TS68" FT /protein_id="CBG87779.1" FT /translation="MTQFASPVLHTLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGDD FT LLGIYADAIREQVNAMQHLRLQDDEYQWLSGLPFFKADYLNWLREFRYNPQQVTVTNDN FT GKLNIRLTGPWREVIMWEVPLLAVISELVHRYRSPKAGVAQALDTLESKLADFTALTAD FT LDMSRFHLMDFGTRRRFSREVQQAIVMRLQQEPWFVGTSNYDLARRLSLTPMGTQAHEW FT FQAHQQISPELATSQRAALAAWLKEYPDQLGIALTDCITMDAFLRDFGPEFASRYQGLR FT HDSGDPVEWGEKAIAHYEKLGIDPQTRTLVFSDNLDLRKAVDLYRHFSSRIKLSFGIGT FT RLTCDIPQVRPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPHVKKA FT S" FT misc_feature complement(1107589..1108269) FT /gene="pncB" FT /locus_tag="ROD_10001" FT /note="HMMPfam hit to PF04095, Nicotinate FT phosphoribosyltransferase-like, score 5.8e-123" FT /inference="protein motif:PFAM:PF04095" FT CDS 1109040..1111652 FT /transl_table=11 FT /gene="pepN" FT /locus_tag="ROD_10011" FT /product="aminopeptidase N" FT /db_xref="GOA:D2TS69" FT /db_xref="InterPro:IPR001930" FT /db_xref="InterPro:IPR012779" FT /db_xref="InterPro:IPR014782" FT /db_xref="InterPro:IPR024601" FT /db_xref="UniProtKB/TrEMBL:D2TS69" FT /protein_id="CBG87780.1" FT /translation="MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAEKTVVTAVSQAVRH FT GASDAPLKLDGEALTLISIHVNDEPWTDYKEEEGQLVISNLPERFTLRIVNSISPAANT FT ALEGLYQSGDALCTQCEAEGFRHITWYLDRPDVLARFTTKIIADKTQYPFLLSNGNRTG FT EGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDR FT APWAMTSLQNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTD FT TATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVN FT RISNVRTMRGLQFAEDASPMAHPIRPDKVIEMNNFYTLTVYEKGAEVIRMIHTLLGEEN FT FQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPVVTVKDDYNPET FT EQYTLTISQRTPPTPDQAEKLPLHIPFAIELYDNEGKVIPLQKGGHPVNAVLNVTQAEQ FT TFVFDKVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYI FT KLNVSRCQQGQPLSLPVHVADAFRAVLLDETIDPALAAEILTLPSVNEIAELFEVIDPL FT AITEVREALTRTLATELADEFLAIYNANHLAEYRVEHADIGKRTLRNACLRFLAFGETQ FT LADTLVSKQYREANNMTDALAALSAAVAAQLPCRDALMQAYDDKWHQDGLVMDKWFILQ FT ATSPADNVLATVRGLLQHRSFSMSNPNRIRSLIGAFAGNNPAAFHAEDGSGYQFLVEML FT TELNSRNPQVASRLIEPLIRLKRYDAQRQEKMRAALEQLKGLENLSGDLFEKISKALA" FT misc_feature 1109079..1110191 FT /gene="pepN" FT /locus_tag="ROD_10011" FT /note="HMMPfam hit to PF01433, Peptidase M1, membrane FT alanine aminopeptidase, N-terminal, score 8.6e-70" FT /inference="protein motif:PFAM:PF01433" FT misc_feature 1109919..1109948 FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT /inference="protein motif:Prosite:PS00142" FT CDS complement(1111824..1112591) FT /transl_table=11 FT /gene="ssuB" FT /locus_tag="ROD_10021" FT /product="putative aliphatic sulfonates ABC transporter, FT ATP-binding protein" FT /db_xref="GOA:D2TS70" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="InterPro:IPR017875" FT /db_xref="UniProtKB/TrEMBL:D2TS70" FT /protein_id="CBG87781.1" FT /translation="MNTARLNQGTPLLLNAVTKKYSEYAVLNRLDLHIPAGQFVAVVGR FT SGGGKSTLLRLLAGLETPTAGELLAGTTPLSAIQEDTRMMFQDARLLPWKSVIDNVGLG FT LKGNWRDAARQALAAVGLENRAAEWPATLSGGQKQRVALARALIHRPGLLLLDEPLGAL FT DALTRLEMQDLIVSLWQEYGFTVLLVTHDVSEAVAMADRVLLIEDGRIGLDLTVDLARP FT RRLGSVRLAELEAEVLNRVMQRSETEQPVRRHG" FT misc_feature complement(1111965..1112483) FT /gene="ssuB" FT /locus_tag="ROD_10021" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 3.2e-56" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(1112151..1112195) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(1112439..1112462) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(1112588..1113379) FT /transl_table=11 FT /gene="ssuC" FT /locus_tag="ROD_10031" FT /product="putative aliphatic sulfonates ABC transporter, FT permease protein" FT /db_xref="GOA:D2TS71" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TS71" FT /protein_id="CBG87782.1" FT /translation="MATPTRKWLLRVAPWFLPAGIVAVWQLASSLGWLSGRIFPSPEGV FT LTAFWTLSVSGELWQHLAISAWRALIGFSIGGSLGLTLGLISGLSRWGERLLDTSIQML FT RNVPHLALIPLVILWFGIDETAKIFLVALGTLFPVYINTWHGIRNIDRGLVEMARSYGL FT SGLPLFLHVILPGALPSVMVGVRFALGLMWLTLIVAETISASSGIGYLAMNAREFLQTD FT IVVVAIILYALLGKLADVSAQLLERVWLRWHPAYHMKEANV" FT misc_feature complement(1112627..1113208) FT /gene="ssuC" FT /locus_tag="ROD_10031" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 6.4e-38" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(join(1112645..1112713,1112747..1112815, FT 1112843..1112902,1112939..1112998,1113011..1113064, FT 1113122..1113190,1113278..1113346)) FT /gene="ssuC" FT /locus_tag="ROD_10031" FT /note="7 probable transmembrane helices predicted for FT ROD10031 by TMHMM2.0 at aa 12-34, 64-86, 106-123, 128-147, FT 160-179, 189-211 and 223-245" FT CDS complement(1113391..1114536) FT /transl_table=11 FT /gene="ssuD1" FT /locus_tag="ROD_10041" FT /product="alkanesulfonate monooxygenase" FT /EC_number="1.14.14.5" FT /db_xref="GOA:D2TS72" FT /db_xref="InterPro:IPR011251" FT /db_xref="InterPro:IPR019911" FT /db_xref="UniProtKB/TrEMBL:D2TS72" FT /protein_id="CBG87783.1" FT /translation="MSLNMFWFLPTHGDGHYLGTDEGARPVDHSYLQQIAQTADRLGFT FT GVLIPTGRSCEDAWLVAASMIPVTRRLKFLVALRPSVTSPTVAARQAATLDRLSDGRAL FT FNLVTGSDPQELAGDGVFLNHTERYEASAEFTQVWRRLLQGETVDFNGKHIHVNGAKLF FT FPPVQQPHPPLYFGGSSDVAQDLAAEQVDLYLTWGEPPEQVKEKIAQVRAKAAARGRTI FT RFGIRLHVIVRETNDEAWRAADRLIAHLDDDTIAKAQAAFARTDSVGQQRMAALHNGRR FT DKLEISPNLWAGVGLVRGGAGTALVGDGPIVAARINEYAALGIDSFVLSGYPHLEEAWK FT VGELLFPHLDVATPAIPQPQRRHLQGEAVANDFIPQKVAQS" FT misc_feature complement(1113667..1114536) FT /gene="ssuD1" FT /locus_tag="ROD_10041" FT /note="HMMPfam hit to PF00296, Bacterial luciferase-like, FT score 0.00017" FT /inference="protein motif:PFAM:PF00296" FT CDS complement(1114533..1115672) FT /transl_table=11 FT /gene="ssuA" FT /locus_tag="ROD_10051" FT /product="putative aliphatic sulfonates ABC transporter, FT substrate-binding protein" FT /db_xref="GOA:D2TS73" FT /db_xref="InterPro:IPR001638" FT /db_xref="InterPro:IPR010067" FT /db_xref="InterPro:IPR015168" FT /db_xref="UniProtKB/TrEMBL:D2TS73" FT /protein_id="CBG87784.1" FT /translation="MACSPTTHRSSTISISRSSRPIYSGASTARWKLSGRLCIVVMRRR FT PSSPFSEEPPMFNLLKLRSPWLALGGMLMLSAVTHAAEPSPEALRIGYQKGSISMVLAK FT SHQLLEKRYPQTRIAWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGV FT EPAKPKAEVILVAENSPIKSVAELKGHKVAFQKGSSSHNLLLRALQQVGLKFTDIQPVY FT LTPADARAAFQQGDVDAWAIWDPYYSAALLHGGVRVLKDGTDLKQTGSFYLAARPYAEK FT NGAFVQGVLETFSQADALTISQRPESIALLAKTMGLPEPVIASYLDHRPPTAISPVSAS FT VAALQQQTADLFYDNRLVPKKIDIRQRIWQPTQQEGKQL" FT misc_feature complement(1114944..1115156) FT /gene="ssuA" FT /locus_tag="ROD_10051" FT /note="HMMPfam hit to PF09084, NMT1/THI5 like, score FT 3.5e-08" FT /inference="protein motif:PFAM:PF09084" FT CDS complement(1115500..1116075) FT /transl_table=11 FT /gene="ssuE" FT /locus_tag="ROD_10061" FT /product="FMN reductase (sulfate starvation-induced FT protein" FT /EC_number="1.5.1.29" FT /db_xref="GOA:D2TS74" FT /db_xref="InterPro:IPR005025" FT /db_xref="InterPro:IPR020048" FT /db_xref="UniProtKB/TrEMBL:D2TS74" FT /protein_id="CBG87785.1" FT /translation="MRIITLAGSPRFPSRSSALLEYAREKLSALDVEVCHWHLHNFAAE FT DLLYARFDSPALQTLSEQLHEADGLIVATPIYKAAYSGALKTLLDLLPERALEGKVVLP FT LATGGTVAHLLAVDYALKPVLNALKAQEILHGVFADDSQVIDYQHKPQFTPNLQRRLDS FT ALETFWQALHRRDATPSVVTVQRGAAHV" FT misc_feature complement(1115557..1116075) FT /gene="ssuE" FT /locus_tag="ROD_10061" FT /note="HMMPfam hit to PF03358, NADPH-dependent FMN FT reductase, score 6e-55" FT /inference="protein motif:PFAM:PF03358" FT CDS 1116319..1117329 FT /transl_table=11 FT /gene="pyrD" FT /locus_tag="ROD_10071" FT /product="dihydroorotate dehydrogenase" FT /EC_number="1.3.3.1" FT /db_xref="GOA:D2TS75" FT /db_xref="InterPro:IPR001295" FT /db_xref="InterPro:IPR005719" FT /db_xref="InterPro:IPR012135" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:D2TS75" FT /protein_id="CBG87786.1" FT /translation="MYYPFVRKALFQLDPERAHELTFQQLRRVAGTPFEALIRQKVPAK FT PVSCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLV FT DAEGLINRMGFNNHGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIY FT AYAGYIAINISSPNTPGLRTLQYGEALDDLLSAIKNKQNDLQTIHQKYVPIAVKIAPDL FT SEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRR FT LAQELKGQLPIIGVGGIDSVIAAREKLAAGASLVQIYSGFIFKGPPLVKEIITHI" FT misc_feature 1116457..1117326 FT /gene="pyrD" FT /locus_tag="ROD_10071" FT /note="HMMPfam hit to PF01180, Dihydroorotate FT dehydrogenase, core, score 5.4e-108" FT /inference="protein motif:PFAM:PF01180" FT misc_feature 1116556..1116615 FT /note="PS00911 Dihydroorotate dehydrogenase signature 1." FT /inference="protein motif:Prosite:PS00911" FT misc_feature 1117192..1117254 FT /note="PS00912 Dihydroorotate dehydrogenase signature 2." FT /inference="protein motif:Prosite:PS00912" FT CDS 1117506..1118048 FT /transl_table=11 FT /locus_tag="ROD_10081" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR009809" FT /db_xref="UniProtKB/TrEMBL:D2TS76" FT /protein_id="CBG87787.1" FT /translation="MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAFS FT PSGFCVDDAALYFSFEEKCRDLDLSREQKAELVLNALVAIRYLKPQMPKSWHFVAHNEN FT WSPATGDTACVWLSDTLEQVSLLVVEPGENATLCLLAQPCVVVAGRTMQLGDAIKIMND FT RLKPQVYPDSFSLGQAV" FT misc_feature 1117506..1118045 FT /locus_tag="ROD_10081" FT /note="HMMPfam hit to PF07126, Protein of unknown function FT DUF1379, score 5.1e-122" FT /inference="protein motif:PFAM:PF07126" FT CDS complement(1118045..1119154) FT /transl_table=11 FT /locus_tag="ROD_10091" FT /product="putative 2Fe-2S iron-sulfur cluster binding FT protein" FT /db_xref="GOA:D2TS77" FT /db_xref="InterPro:IPR001041" FT /db_xref="InterPro:IPR005302" FT /db_xref="InterPro:IPR005303" FT /db_xref="InterPro:IPR006058" FT /db_xref="InterPro:IPR011037" FT /db_xref="InterPro:IPR012675" FT /db_xref="UniProtKB/TrEMBL:D2TS77" FT /protein_id="CBG87788.1" FT /translation="MLTLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITETDGTF FT ITARQYPQMVRFTPSPLHDGLHLTAPDGSSAVARFSDFAAQDAPTEVWGNHFTARIAPD FT AINQWLSGFFSRDVQLRWVGPQLTRRVKRHAGVPLSFADGYPYLLVNDASLRDLQRRCP FT AGVQVEQFRPNIVVSGASAWEEDTWKAIRIGEVVFDVVKPCSRCIFTTVSPEKGLKHPS FT GEPLATLQCFRTAPDNGDVDFGQNLIARNSGVIRVGDEVEILSTGPARVYGAARQDDTV FT AVAPQADAAVDIDWQGQAFRGNNQQVLLEQLESQGIRIPYSCRTGICGSCRIKLLEGEV FT SPLKKSALGADGTILSCSCVPKTALKLAR" FT misc_feature complement(1118066..1118284) FT /locus_tag="ROD_10091" FT /note="HMMPfam hit to PF00111, Ferredoxin, score 1.7e-17" FT /inference="protein motif:PFAM:PF00111" FT misc_feature complement(1118162..1118188) FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT /inference="protein motif:Prosite:PS00197" FT misc_feature complement(1118366..1118773) FT /locus_tag="ROD_10091" FT /note="HMMPfam hit to PF03473, Molybdenum cofactor FT sulphurase, C-terminal, score 4e-55" FT /inference="protein motif:PFAM:PF03473" FT misc_feature complement(1118804..1119154) FT /locus_tag="ROD_10091" FT /note="HMMPfam hit to PF03476, MOSC, N-terminal beta FT barrel, score 1.1e-46" FT /inference="protein motif:PFAM:PF03476" FT misc_feature complement(1119041..1119070) FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT /inference="protein motif:Prosite:PS00339" FT CDS 1119252..1121360 FT /transl_table=11 FT /locus_tag="ROD_10101" FT /product="putative RNA methylase" FT /db_xref="GOA:D2TS78" FT /db_xref="InterPro:IPR000241" FT /db_xref="InterPro:IPR002052" FT /db_xref="InterPro:IPR002296" FT /db_xref="InterPro:IPR004114" FT /db_xref="InterPro:IPR017244" FT /db_xref="InterPro:IPR019614" FT /db_xref="UniProtKB/TrEMBL:D2TS78" FT /protein_id="CBG87789.1" FT /translation="MNALFASTARGLEELLKTELEGLGATECQVVQGGVHFKGDTRLVY FT QSLMWSRLASRIILPLSECKVYSDLDLYLGVMAIDWTAMFTPGATFAVHFSGLNDTIRN FT SQYGALKVKDAIVDSFTRKNLPRPNVDRESPDIRVNVWLNKDTASIALDLSGDGLHLRG FT YRDRTGLAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMWATDRAPGLHRGR FT WGFSGWAQHDETVLQEVKAEAQTRARKGLADYGSHFYGSDSDARVIERARSNARRAGIG FT ELITFEVKDVAQLSNPLPKGPYGTVISNPPYGERLDSEPALIALHSLLGRTMKNQFGGW FT NLSLFSASPDLLSSLQLRADKQFKAKNGPLDCVQKNYHIAETTADSKPATVAEDYANRL FT RKNIKKLEKWARQEGIECYRLYDADLPEYNVAVDRYADWVVIQEYAPPKTVDAQKARQR FT LFDIIAATLTVLDIAPNKLVLKTRERQKGKNQYQKMNEKGEFIEVGEYNARLWVNLTDY FT LDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSASVHAGLGGARSTTTVDMSRTYLEW FT AERNLRLNGLSGRAHRLIQADCLGWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDH FT LRLMQDLKRLLRQGGTIMFSNNKRGFRMDLDGLAALGLKAQEITQKTLSQDFARNRQIH FT NCWLITAA" FT misc_feature 1119417..1119713 FT /locus_tag="ROD_10101" FT /note="HMMPfam hit to PF02926, THUMP, score 4.5e-20" FT /inference="protein motif:PFAM:PF02926" FT misc_feature 1119735..1120379 FT /locus_tag="ROD_10101" FT /note="HMMPfam hit to PF01170, Putative RNA methylase, FT score 1.5e-98" FT /inference="protein motif:PFAM:PF01170" FT misc_feature 1119834..1119869 FT /note="PS01261 Uncharacterized protein family UPF0020 FT signature." FT /inference="protein motif:Prosite:PS01261" FT misc_feature 1120167..1120187 FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT /inference="protein motif:Prosite:PS00092" FT misc_feature 1120809..1121306 FT /locus_tag="ROD_10101" FT /note="HMMPfam hit to PF03602, Conserved hypothetical FT protein CHP00095, score 0.0043" FT /inference="protein motif:PFAM:PF03602" FT CDS 1121373..1123280 FT /transl_table=11 FT /gene="uup" FT /locus_tag="ROD_10111" FT /product="ABC transporter ATP-binding protein" FT /db_xref="GOA:D2TS79" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TS79" FT /protein_id="CBG87790.1" FT /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTL FT MKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDV FT SRLVMNDPSDKNLNELAKVQELLDHHNLWQLENRINEVLAQLGLDPNAALSALSGGWLR FT KAALGRALVSNPRVLLLDEPTNHLDIETIDWLEDFLKAFNGTIIFISHDRSFIRNMATR FT IVDLDRGKLVTYPGNYDQYLVEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRN FT EGRVRALKAMRRERSERREVMGTAKMQVEEATRSGKIVFEMENVDYQVDGKQLVKDFSA FT QVQRGDKIALIGPNGCGKTTLLKLMLGQLKADSGRIHVGTKLEVAYFDQHRAELDPDKT FT VMDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKP FT SNLLILDEPTNDLDVETLELLEELIDGYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIG FT RYVGGYHDARGQQEQHLAFKQPVVKKTPEVVAEKAETVKRSSSKLSYKLQRELEQLPQL FT LEDLEAKLEALQAQVADASFFSQPHAHTQQVLSDLAKAEQELEQAFERWEYLEALKNGA FT " FT misc_feature 1121457..1122059 FT /gene="uup" FT /locus_tag="ROD_10111" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 5.2e-48" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 1121478..1121501 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 1121841..1121885 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature 1122405..1122911 FT /gene="uup" FT /locus_tag="ROD_10111" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 4.7e-47" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 1122426..1122449 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 1122693..1122737 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT CDS 1123295..1124557 FT /transl_table=11 FT /gene="pqiA" FT /locus_tag="ROD_10121" FT /product="paraquat-inducible protein A" FT /db_xref="InterPro:IPR005219" FT /db_xref="InterPro:IPR007498" FT /db_xref="UniProtKB/TrEMBL:D2TS80" FT /protein_id="CBG87791.1" FT /translation="MCKHHHAAKHILCSQCDMLVALPPLQHGQKATCPRCGTTLTTEWD FT APRQRPTAYALAALFMLLLSNLFPFVNMNVAGVNSEVTLMEIPRVLFSEDYASLGTFFI FT LFVQLVPAFCLFTILLLVNRVEMPERLKTRLARVLFQLKSWGMAEIFLAGVLVSFVKLM FT AYGDIGVGSSFIPWCLFCVLQLRAFQCVDRRWLWDDIAPMPALRQPLKPGVPGIRQGLR FT SCPCCTAILPADERICPRCQTKGYVRRRNSVQWTLALLVTSLMLYLPANILPIMITDLL FT GSKMPSTILAGVVLLWSEGSYPVAAVIFIASIMVPTLKMIAIAWLCWDAKGHGRRDSER FT MHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMNIYPAMGALMFALVVIMTMFSAMT FT FDPRLTWDREPDHEESGQHGI" FT misc_feature 1123298..1123906 FT /gene="pqiA" FT /locus_tag="ROD_10121" FT /note="HMMPfam hit to PF04403, Paraquat-inducible protein FT A, score 1.6e-91" FT /inference="protein motif:PFAM:PF04403" FT misc_feature join(1123454..1123522,1123592..1123660,1123697..1123765, FT 1123778..1123846,1124057..1124125,1124204..1124272, FT 1124342..1124410,1124423..1124491) FT /gene="pqiA" FT /locus_tag="ROD_10121" FT /note="8 probable transmembrane helices predicted for FT ROD10121 by TMHMM2.0 at aa 54-76, 100-122, 135-157, FT 162-184, 255-277, 304-326, 350-372 and 377-399" FT misc_feature 1123931..1124533 FT /gene="pqiA" FT /locus_tag="ROD_10121" FT /note="HMMPfam hit to PF04403, Paraquat-inducible protein FT A, score 6.1e-101" FT /inference="protein motif:PFAM:PF04403" FT CDS 1124547..1126187 FT /transl_table=11 FT /gene="pqiB" FT /locus_tag="ROD_10131" FT /product="paraquat-inducible protein B" FT /db_xref="InterPro:IPR003399" FT /db_xref="UniProtKB/TrEMBL:D2TS81" FT /protein_id="CBG87792.1" FT /translation="MESKNGEAKVQRVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPEV FT TLITTNAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNAGMEKLLHQDSVF FT WVVKPQVGREGISGLGTLLSGAYIELQPGNKGTQPESYQLLDSPPLAPPDARGIRVVLD FT SKKAGQLSPGDPVLFRGYRVGSVETSTFDAQKRTISYQLFINAPNDRLVTSNVRFWKDS FT GIAVDLTSAGMRVEMGSLSTLFGGGVSFDVPEGLELGQPVAEKSSFSLYDDQKSIQDSL FT YTDHIDYLMFFKDSIRGLQPGAPLEFRGIRLGTVSKVPFFVPNMRQVFNNDYRIPVLVR FT IEPERLKAQLGEETDVGAHLADLLKRGLRGSLKTGNLVTGALYVDLDFYPKEPPISGIR FT EFNGYQIIPTVSGGLAQIQQRLMDALDKINNLPLNPMIQQATNTLSESQRTMKRLQTTL FT DNVNALTSSQSMQQLPADMQNTLRELNRSMQGFQPGSAAYNKMVADMQRLDQVLRELQP FT VLKTLNEKSNALVFEAKDKKDPEPKRAKQ" FT misc_feature 1124592..1124660 FT /gene="pqiB" FT /locus_tag="ROD_10131" FT /note="1 probable transmembrane helix predicted for FT ROD10131 by TMHMM2.0 at aa 16-38" FT misc_feature 1124667..1124945 FT /gene="pqiB" FT /locus_tag="ROD_10131" FT /note="HMMPfam hit to PF02470, Mammalian cell entry FT related, score 7.5e-23" FT /inference="protein motif:PFAM:PF02470" FT misc_feature 1125012..1125305 FT /gene="pqiB" FT /locus_tag="ROD_10131" FT /note="HMMPfam hit to PF02470, Mammalian cell entry FT related, score 0.0024" FT /inference="protein motif:PFAM:PF02470" FT misc_feature 1125396..1125713 FT /gene="pqiB" FT /locus_tag="ROD_10131" FT /note="HMMPfam hit to PF02470, Mammalian cell entry FT related, score 2.2e-14" FT /inference="protein motif:PFAM:PF02470" FT CDS 1126184..1126747 FT /transl_table=11 FT /locus_tag="ROD_10141" FT /product="putative lipoprotein" FT /db_xref="InterPro:IPR005586" FT /db_xref="UniProtKB/TrEMBL:D2TS82" FT /protein_id="CBG87793.1" FT /translation="MKKWRVVVMACLLASCSSGGENKSYYQLPVAQSGVQSTANQSSRL FT LWVEQVSVPDYLAGNGLVYQTSDVQYVIASNNLWASPLDQQLRNTLVASLSTQLPGWVV FT ASQPLGSVQDTLNVTVTGFHGRYDGKVIVSGELLLNHQGQLIKRPFHIEAVQTRDGYDE FT MVKVLAAAWSQEAAAIAQELKRLP" FT sig_peptide 1126184..1126243 FT /locus_tag="ROD_10141" FT /note="Signal peptide predicted for ROD10141 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.653 between residues 20 and 21" FT misc_feature 1126199..1126726 FT /locus_tag="ROD_10141" FT /note="HMMPfam hit to PF03886, Protein of unknown function FT DUF330, score 5.9e-88" FT /inference="protein motif:PFAM:PF03886" FT misc_feature 1126199..1126231 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 1127004..1127171 FT /transl_table=11 FT /gene="rmf" FT /locus_tag="ROD_10142" FT /product="ribosome modulation factor" FT /db_xref="InterPro:IPR007040" FT /db_xref="InterPro:IPR023200" FT /db_xref="UniProtKB/TrEMBL:D2TS83" FT /protein_id="CBG87794.1" FT /translation="MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSHWLGGWR FT EAMADRVVMA" FT misc_feature 1127004..1127168 FT /gene="rmf" FT /locus_tag="ROD_10142" FT /note="HMMPfam hit to PF04957, Ribosome modulation factor, FT score 5.1e-44" FT /inference="protein motif:PFAM:PF04957" FT CDS complement(1127266..1127784) FT /transl_table=11 FT /gene="fabA" FT /locus_tag="ROD_10151" FT /product="3-hydroxydecanoyl-[acyl-carrier-protein] FT dehydratase" FT /db_xref="GOA:D2TS84" FT /db_xref="InterPro:IPR000794" FT /db_xref="InterPro:IPR010083" FT /db_xref="InterPro:IPR013114" FT /db_xref="UniProtKB/TrEMBL:D2TS84" FT /protein_id="CBG87795.1" FT /translation="MVDKPESYTKEDLLASGRGELFGAKGPQLPAPDMLMMDRVTKLCK FT TGGNFDKGYVEAELDINPDLWFFKCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKG FT RALGVGQVKFSGQILPTAEKVTYRIHFKRVMNGRLIMGIADGEVLVDGRQIYTANDLRV FT GLFKDTSAF" FT misc_feature complement(1127308..1127700) FT /gene="fabA" FT /locus_tag="ROD_10151" FT /note="HMMPfam hit to PF07977, FT Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FT FabA/FabZ, score 4.9e-74" FT /inference="protein motif:PFAM:PF07977" FT CDS complement(1127853..1129613) FT /transl_table=11 FT /locus_tag="ROD_10161" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TS85" FT /db_xref="InterPro:IPR008269" FT /db_xref="InterPro:IPR020568" FT /db_xref="UniProtKB/TrEMBL:D2TS85" FT /protein_id="CBG87796.1" FT /translation="MTITKLAWRDLVPDTESYQDVFAQSHVTDENNTLLSDTQPRLQFA FT LEQLLHPRASSPFMLAKAPEELEYLTLLAEAARTLQHDAGRLTGGHYDISGHSIRYRDA FT EQVDDNFATSSQVVIADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGVLVISLRTLLA FT QPLLWMRLKSIVSRGRFDWVAFDESRPLPVSVPSMPLKLRVLLVGERESLADFQEMEPE FT LAEQAIYSEFEDNLQIVDAESMAQWCRWVSWTAKRNQLPVPATDAWEPLVREAVRYTGE FT QDTLPLNPLWIIRQFTEVAPLCESETCSGEQLSLMLAQREWREGFLAERMQDEILQEQI FT LIETEGERVGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHA FT KGMMIMQAFLMSELQLEQQLPFSASLTFEQSYSEVDGDSASMAELCALISALAGVPVNQ FT HIAITGSVDQFGRAQPVGGLNEKIEGFFTICQQRELTGKQGVIIPAANVRHLSLPPALL FT KAVEEDKFTVWAVEDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQATQQDGHHRFPWP FT LRWLNGFVPN" FT misc_feature complement(1127985..1128467) FT /locus_tag="ROD_10161" FT /note="HMMPfam hit to PF05362, Peptidase S16, lon FT C-terminal, score 0.00023" FT /inference="protein motif:PFAM:PF05362" FT CDS 1129853..1130251 FT /transl_table=11 FT /locus_tag="ROD_10181" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TS86" FT /db_xref="InterPro:IPR009390" FT /db_xref="UniProtKB/Swiss-Prot:D2TS86" FT /protein_id="CBG87797.1" FT /translation="MKKHREGELITRYVEASAAQEAVEMLLTLENEPVRVNVWIEEHLN FT PALFNRLKQTIRARRKRHFNAEHQHTRKKSIDLEFLVWQRLAGLAQRRGKTLSETIVQL FT IEDAENKEKYATKMSSLKQDLQALLGKE" FT misc_feature 1129853..1130245 FT /locus_tag="ROD_10181" FT /note="HMMPfam hit to PF06303, Protein of unknown function FT DUF1047, score 9.9e-89" FT /inference="protein motif:PFAM:PF06303" FT CDS complement(1130334..1131389) FT /transl_table=11 FT /gene="ompA" FT /locus_tag="ROD_10191" FT /product="outer membrane protein A" FT /db_xref="GOA:D2TS87" FT /db_xref="InterPro:IPR000498" FT /db_xref="InterPro:IPR002368" FT /db_xref="InterPro:IPR006664" FT /db_xref="InterPro:IPR006665" FT /db_xref="InterPro:IPR006690" FT /db_xref="InterPro:IPR011250" FT /db_xref="UniProtKB/TrEMBL:D2TS87" FT /protein_id="CBG87798.1" FT /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFI FT DNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKL FT GYPITDDLDIYTRLGGMVWRADTKSHNNLTGASTKDHDTGVSPVFAGGIEWAMTRDIAT FT RLEYQWTNNIGDANTIGTRPDNGLLSVGVSYRFGQQEEAAPIAPAPAPAPEVQTKHFTL FT KSDVLFNFNKATLKPEGQQALDQMYSQLSNLDPKDGSVVVLGFTDRIGSDTYNQGLSEK FT RAQSVVDYLISKGIPADKISARGMGESNPVTGSTCDNVKARAALIDCLAPDRRVEIEVK FT GVKDVVTQPQA" FT misc_feature complement(1130418..1130711) FT /gene="ompA" FT /locus_tag="ROD_10191" FT /note="HMMPfam hit to PF00691, Outer membrane protein, FT OmpA/MotB, C-terminal, score 1.3e-47" FT /inference="protein motif:PFAM:PF00691" FT misc_feature complement(1130472..1130606) FT /note="PS01068 OmpA-like domain." FT /inference="protein motif:Prosite:PS01068" FT misc_feature complement(1130790..1131374) FT /gene="ompA" FT /locus_tag="ROD_10191" FT /note="HMMPfam hit to PF01389, Outer membrane protein, FT OmpA-like, transmembrane region, score 1.6e-121" FT /inference="protein motif:PFAM:PF01389" FT sig_peptide complement(1131327..1131389) FT /gene="ompA" FT /locus_tag="ROD_10191" FT /note="Signal peptide predicted for ROD10191 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.997 between residues 21 and 22" FT CDS complement(1131745..1132260) FT /transl_table=11 FT /gene="sulA" FT /locus_tag="ROD_10201" FT /product="cell division inhibitor" FT /db_xref="GOA:D2TS88" FT /db_xref="InterPro:IPR004596" FT /db_xref="UniProtKB/TrEMBL:D2TS88" FT /protein_id="CBG87799.1" FT /translation="MIMYTSGYANRSSSFTSTANKMARVSSEKASAGLISEVVYREDQP FT MMTQLLLLPLLQQLGQQSRWQLWLTPQQKLSREWVQSAGLPLAKVMQINQLSPCHTLES FT MVRALRTGNYSVVIGWLAEELTEEEHAELVKAADEGNAMGFIMRPVSAHAHATRQQTGL FT KIHSNLYH" FT misc_feature complement(1131895..1132251) FT /gene="sulA" FT /locus_tag="ROD_10201" FT /note="HMMPfam hit to PF03846, Cell division inhibitor FT SulA, score 3.5e-92" FT /inference="protein motif:PFAM:PF03846" FT CDS 1132472..1133101 FT /transl_table=11 FT /locus_tag="ROD_10211" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007076" FT /db_xref="InterPro:IPR007077" FT /db_xref="UniProtKB/TrEMBL:D2TS89" FT /protein_id="CBG87800.1" FT /translation="MKVHSYDRIYKSQEYLSSLGNIQYRSLFGSYSLTIQDTVFAMVAD FT GELYLRACEQSVQYCVKHSPVWLTFMKRGRPVMLNYYQVDESLWRDQQQLIRLSKFSLD FT AALQEKLRRGAQRRLKDLPNMTFHLESLLNEVGINDVSTLRILGAKMCWLRLKQLNKSI FT TDKILYILEGAIYGVHEAALPATRRRELAEWVKSLAQEPMYPLKIE" FT misc_feature 1132493..1132795 FT /locus_tag="ROD_10211" FT /note="HMMPfam hit to PF04993, TfoX, N-terminal, score FT 1.1e-07" FT /inference="protein motif:PFAM:PF04993" FT misc_feature 1132814..1133056 FT /locus_tag="ROD_10211" FT /note="HMMPfam hit to PF04994, TfoX, C-terminal, score FT 2.1e-36" FT /inference="protein motif:PFAM:PF04994" FT CDS complement(1133055..1135217) FT /transl_table=11 FT /locus_tag="ROD_10221" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR010019" FT /db_xref="InterPro:IPR010020" FT /db_xref="UniProtKB/TrEMBL:D2TS90" FT /protein_id="CBG87801.1" FT /translation="MLSPLLRRYTWNSTWLYYVRIFIALCGTTALPWWLGDVKLTIPLT FT LGMVAAALTDLDDRLAGRLRNLIITLICFFIASASVELLFPYPWLFAIGLTLSTSGFIL FT LGGLGQRYATIAFGALLIAIYTMLGTSLYAHWYQQPILLLAGAIWYNGLTLIGHLLFPI FT RPLQDNLARSYEQLAHYLELKSRLFDPDIEDDSQAPLYDLALANGQLMATLNQTKVSLL FT SRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLREHFRYSDVMFRFQRLMSMQ FT GQACLQLSRSILLRTPYQHDPHFERAFTHLDAALERMQASGAAADLLKTLGFLLANLRA FT IDAQLATIESEQAQAMPRSESENQLADDSPHGMSDIWLRLSRNFTPESALFRHAVRMSL FT VLCVGYAIIQITGMHHGYWILLTSLFVCQPNYNATRRRLALRIVGTLVGVAIGLPILWF FT VPSLEGQLILLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEGFEVALPRVIDTL FT IGCAIAWAAVSFIWPDWRFRNLPRVLKRATDANCRYLDAILEQYHQGRDNRLAYRIARR FT DAHNRDAELASVVSNMSSEPDVTAQTREAAFRLLCLNHTFTSYISALGAHREQLTNPEV FT LTLLDDAVCYVDDALHHLPADEARVQQALAELKLRIQHLEPRLDSKEPLVIQQVGLLIA FT LLPEIGRLQRQITQSSADTSAPAPAI" FT misc_feature complement(1133103..1135199) FT /locus_tag="ROD_10221" FT /note="HMMPfam hit to PF05976, Protein of unknown function FT DUF893, YccS/YhfK, score 0" FT /inference="protein motif:PFAM:PF05976" FT misc_feature complement(join(1133616..1133669,1133688..1133756, FT 1133769..1133822,1133841..1133909,1133952..1134020, FT 1134729..1134797,1134807..1134875,1134894..1134953, FT 1134963..1135019,1135056..1135100,1135113..1135181)) FT /locus_tag="ROD_10221" FT /note="11 probable transmembrane helices predicted for FT ROD10221 by TMHMM2.0 at aa 13-35, 40-54, 67-85, 89-108, FT 115-137, 141-163, 400-422, 437-459, 466-483, 488-510 and FT 517-534" FT misc_feature complement(1133913..1133990) FT /note="PS00217 Sugar transport proteins signature 2." FT /inference="protein motif:Prosite:PS00217" FT CDS complement(1135235..1135747) FT /transl_table=11 FT /locus_tag="ROD_10231" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR005185" FT /db_xref="UniProtKB/TrEMBL:D2TS91" FT /protein_id="CBG87802.1" FT /translation="MLQPKKTLQLPQSQKTRNNRGFMRTVLNILNFVLGGFATTLAWLL FT ATLLSIVLIFTLPLTRSCWEITRLSLLPFGNEAIHVDELNPTGKSALMNTGGTLLNIFW FT LIFFGWWLCLMHIASGIAQCITIIGIPVGIANFKIAAIALWPVGRRVVPVETARAAREA FT NARRRFE" FT misc_feature complement(1135286..1135456) FT /locus_tag="ROD_10231" FT /note="HMMPfam hit to PF03733, Protein of unknown function FT DUF307, score 1.3e-31" FT /inference="protein motif:PFAM:PF03733" FT misc_feature complement(join(1135307..1135375,1135385..1135453, FT 1135586..1135654)) FT /locus_tag="ROD_10231" FT /note="3 probable transmembrane helices predicted for FT ROD10231 by TMHMM2.0 at aa 32-54, 99-121 and 125-147" FT misc_feature complement(1135505..1135675) FT /locus_tag="ROD_10231" FT /note="HMMPfam hit to PF03733, Protein of unknown function FT DUF307, score 8.8e-20" FT /inference="protein motif:PFAM:PF03733" FT CDS 1135804..1137858 FT /transl_table=11 FT /gene="helD" FT /locus_tag="ROD_10241" FT /product="helicase IV" FT /db_xref="GOA:D2TS92" FT /db_xref="InterPro:IPR000212" FT /db_xref="InterPro:IPR014016" FT /db_xref="InterPro:IPR022161" FT /db_xref="UniProtKB/TrEMBL:D2TS92" FT /protein_id="CBG87803.1" FT /translation="MELKATSLGKRLAQHPYDRAEILNAGVKVSGERHEYLIPFNQLMA FT IHCKRGLVWGELEFVLPDEKVVRLHGTEWAETQRFHHHLNARWQQWSQEMSEVAAGVLQ FT QQLEAIAARTGQHAWLTREQTAGVQQQILRAFAALPLPLNRLLELDNCREALKQCQAWL FT KDIDACRLAHNQAYTDAMLNEYAEFFRQVESSPLNPAQARAVVNGERALLVLAGAGSGK FT TSVLVARAGWLLARGEAAAEQILLLAFGRQAAQEIDERIRERLHTDAITARTFHALALH FT IIRQGSKKAPTVSKLENDSAARHKLFISAWRQQCSEKKAHAKGWRQWLEEEMQWTVAEG FT NFWDDEKLQRRLAPRLDRWVSLMRMHGGAQAEMIAGAPEAIRDLFSKRIKLMAPLLKAW FT KSALKAENAVDFSGLIHQAIVILEKGRFVSPWKHILVDEFQDISPQRAALLAALRKQNS FT QTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTFGDGDRCDLDTTYRFNNRIGEVANRFIQ FT QNPHQLKKPLNSLTAGDKKAVTLLDETQLDALLDKLSGYAKADERILVLARYHYLKPES FT LEKAATRWPKLQLDFMTIHASKGQQADYVIIVGLQEGNDGFPAPARESIMEEALLPPVE FT DFADAEERRLLYVALTRARHRVWLLYNKANPSRFVENLKDLDVPTARKP" FT misc_feature 1136392..1136658 FT /gene="helD" FT /locus_tag="ROD_10241" FT /note="HMMPfam hit to PF00580, DNA helicase, UvrD/REP type, FT score 2.9e-21" FT /inference="protein motif:PFAM:PF00580" FT misc_feature 1136449..1136472 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 1137007..1137411 FT /gene="helD" FT /locus_tag="ROD_10241" FT /note="HMMPfam hit to PF00580, DNA helicase, UvrD/REP type, FT score 1.1e-17" FT /inference="protein motif:PFAM:PF00580" FT CDS complement(1137889..1138347) FT /transl_table=11 FT /gene="mgsA" FT /locus_tag="ROD_10251" FT /product="methylglyoxal synthase" FT /EC_number="4.2.3.3" FT /db_xref="GOA:D2TS93" FT /db_xref="InterPro:IPR004363" FT /db_xref="InterPro:IPR011607" FT /db_xref="InterPro:IPR018148" FT /db_xref="UniProtKB/TrEMBL:D2TS93" FT /protein_id="CBG87804.1" FT /translation="MELTTRTLPARKHIALVAHDHCKKMLMSWVERHQPLLDKHVLYAT FT GTTGNLIQHATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKA FT LLRLATVWNIPVATNVATADFIIQSPHFNDNVDVLIPDYQRYLAERLK" FT misc_feature complement(1137994..1138275) FT /gene="mgsA" FT /locus_tag="ROD_10251" FT /note="HMMPfam hit to PF02142, MGS-like, score 1.7e-27" FT /inference="protein motif:PFAM:PF02142" FT misc_feature complement(1138129..1138155) FT /note="PS01335 Methylglyoxal synthase active site." FT /inference="protein motif:Prosite:PS01335" FT CDS complement(1138441..1139103) FT /transl_table=11 FT /locus_tag="ROD_10261" FT /product="putative exported protein" FT /db_xref="InterPro:IPR018635" FT /db_xref="UniProtKB/TrEMBL:D2TS94" FT /protein_id="CBG87805.1" FT /translation="MKTGAATLIFALCLPVTVFATTLRLSTDIDLLVLDGKKVSSSLLR FT GADSIELDNGPHQLVFRVEKTIVLASHQEQLYISPPLVISFDTQRVGQVNFRLPRLEND FT RDASHFNASPRLELLDGDAMPIPARLDLLAITSTAKPIDFEMETERYNKAAKRASLPQF FT ATIMADDSTLLSGVSELDTLPPQSRTLTEQRLKYWFKLADPQTRNTFLQWAEKQPSS" FT sig_peptide complement(1139044..1139103) FT /locus_tag="ROD_10261" FT /note="Signal peptide predicted for ROD10261 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.997 between residues 20 and 21" FT CDS 1139226..1139690 FT /transl_table=11 FT /locus_tag="ROD_10271" FT /product="putative CoA-binding protein" FT /db_xref="GOA:D2TS95" FT /db_xref="InterPro:IPR003781" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TS95" FT /protein_id="CBG87806.1" FT /translation="MGSQDCRTLCKTAWRKMMKESDIADILTSTRTIALVGASDKPDRP FT SYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNSEAAWGVA FT QEAIAIGAKTLWMQLGVINEQAAVLAREAGLTVVMDRCPAIEIPRLGLTK" FT misc_feature 1139301..1139591 FT /locus_tag="ROD_10271" FT /note="HMMPfam hit to PF02629, CoA-binding, score 1.1e-25" FT /inference="protein motif:PFAM:PF02629" FT CDS complement(1139743..1140060) FT /transl_table=11 FT /locus_tag="ROD_10281" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TSZ6" FT /db_xref="InterPro:IPR011722" FT /db_xref="InterPro:IPR022866" FT /db_xref="UniProtKB/TrEMBL:D2TSZ6" FT /protein_id="CBG87807.1" FT /translation="MIASKFGIGQQVRHSLLGYLGVVMDIDPVYSLEEPSPDELAVNDE FT LRAAPWYHVVMEDDDGQPVHTYLAEAQLRSETQDEHPEQPSMDELAQTIRKQLQAPRLR FT N" FT misc_feature complement(1139746..1140054) FT /locus_tag="ROD_10281" FT /note="HMMPfam hit to PF08755, Hemimethylated DNA-binding FT region, score 6.1e-50" FT /inference="protein motif:PFAM:PF08755" FT CDS complement(1140118..1141221) FT /transl_table=11 FT /locus_tag="ROD_10291" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TSZ7" FT /db_xref="InterPro:IPR015947" FT /db_xref="InterPro:IPR019614" FT /db_xref="UniProtKB/TrEMBL:D2TSZ7" FT /protein_id="CBG87808.1" FT /translation="MEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPSESV FT DIAFFTRRLQQAQQWRDWLAKKDGLDSYRLIAGESDGLPGVTIDRFGHFLVLQLLSAGA FT EYQRAALISALQALYPECAIYDRSDVAVRKKEGMDLTQGPVTGEHPPALLAIEEHGMKL FT LVDIQGGHKTGYYLDQRDSRLAVRRYVANQRVLNCFSYTGGFAISALMGGCRQVVSVDT FT SQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRAFRERGEKFDVIVMDPPKFVENKSQ FT LMGACRGYKDINMLAIQLLNPGGVLLTFSCSGLMTTDLFQKIIADAAIDAGRDVQFIEQ FT FRQAADHPVIATYPEGLYLKGFACRVM" FT misc_feature complement(1140121..1140132) FT /note="PS00294 Prenyl group binding site (CAAX box)." FT /inference="protein motif:Prosite:PS00294" FT misc_feature complement(1140202..1140687) FT /locus_tag="ROD_10291" FT /note="HMMPfam hit to PF03602, Conserved hypothetical FT protein CHP00095, score 0.0014" FT /inference="protein motif:PFAM:PF03602" FT misc_feature complement(1140289..1140321) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(1140580..1140612) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 1141403..1141684 FT /transl_table=11 FT /locus_tag="ROD_10301" FT /product="putative acylphosphatase" FT /EC_number="3.6.1.7" FT /db_xref="GOA:D2TSZ8" FT /db_xref="InterPro:IPR001792" FT /db_xref="InterPro:IPR017968" FT /db_xref="InterPro:IPR020456" FT /db_xref="UniProtKB/TrEMBL:D2TSZ8" FT /protein_id="CBG87809.1" FT /translation="MSRVCIIAWVYGRVQGVGFRYTTQQEARRLELTGYAKNRDDGSVE FT VVACGEAQQVEKLMKWLKDGGPRSARVDRVLSEPHRPRDELNGFTIRY" FT misc_feature 1141430..1141675 FT /locus_tag="ROD_10301" FT /note="HMMPfam hit to PF00708, Acylphosphatase, score FT 8.3e-15" FT /inference="protein motif:PFAM:PF00708" FT misc_feature 1141430..1141462 FT /note="PS00150 Acylphosphatase signature 1." FT /inference="protein motif:Prosite:PS00150" FT misc_feature 1141502..1141552 FT /note="PS00151 Acylphosphatase signature 2." FT /inference="protein motif:Prosite:PS00151" FT CDS complement(1141681..1142007) FT /transl_table=11 FT /gene="tusE" FT /locus_tag="ROD_10311" FT /product="sulfurtransferase (tRNA 2-thiouridine FT synthesizing protein E)" FT /EC_number="2.8.1.-" FT /db_xref="GOA:D2TSZ9" FT /db_xref="InterPro:IPR007453" FT /db_xref="UniProtKB/TrEMBL:D2TSZ9" FT /protein_id="CBG87810.1" FT /translation="MIFEGNEIATDSEGYLQDTAQWSEPLATVIAKNEGIILSPEHWEV FT VRFVREFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGLPKP FT VKCI" FT misc_feature complement(1141684..1142007) FT /gene="tusE" FT /locus_tag="ROD_10311" FT /note="HMMPfam hit to PF04358, DsrC-like protein, score FT 6.1e-76" FT /inference="protein motif:PFAM:PF04358" FT CDS complement(1142101..1142760) FT /transl_table=11 FT /locus_tag="ROD_10321" FT /product="putative outer membrane protein" FT /db_xref="GOA:D2TT00" FT /db_xref="InterPro:IPR006213" FT /db_xref="InterPro:IPR006214" FT /db_xref="UniProtKB/TrEMBL:D2TT00" FT /protein_id="CBG87811.1" FT /translation="MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVL FT MLPSPGLILTLVGMYGLMFLTYKTANKPSGIISAFAFTGFLGYILGPILNAYLSAGMGD FT VIGMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLA FT ISAVFILISSGAILFETSNIIRGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD" FT misc_feature complement(1142110..1142724) FT /locus_tag="ROD_10321" FT /note="HMMPfam hit to PF01027, Protein of unknown function FT UPF0005, score 1.7e-59" FT /inference="protein motif:PFAM:PF01027" FT misc_feature complement(join(1142113..1142181,1142218..1142286, FT 1142299..1142367,1142386..1142445,1142473..1142541, FT 1142560..1142628,1142641..1142700)) FT /locus_tag="ROD_10321" FT /note="7 probable transmembrane helices predicted for FT ROD10321 by TMHMM2.0 at aa 21-40, 45-67, 74-96, 106-125, FT 132-154, 159-181 and 194-216" FT misc_feature complement(1142410..1142538) FT /note="PS01243 Uncharacterized protein family UPF0005 FT signature." FT /inference="protein motif:Prosite:PS01243" FT sig_peptide complement(1142638..1142760) FT /locus_tag="ROD_10321" FT /note="Signal peptide predicted for ROD10321 by SignalP 2.0 FT HMM (Signal peptide probability 0.989) with cleavage site FT probability 0.937 between residues 41 and 42" FT tRNA 1143035..1143119 FT /locus_tag="ROD_t18" FT /product="transfer RNA-Ser" FT /anticodon=(pos:1143069..1143071,aa:Ser) FT /note="tRNA Ser anticodon TGA, Cove score 58.36" FT repeat_region 1143067..1143136 FT /note="70 bp direct repeat" FT misc_feature 1143137..1151111 FT /note="putative prophage remnant" FT /note="CRPr11" FT CDS complement(join(1143208..1143759,1143761..1143943, FT 1143943..1144140)) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10341" FT /product="putative phage integrase (pseudogene)" FT /note="pseudogene, fragmented by two frameshifts and FT N-terminal deleted by ISCro1 insertion" FT misc_feature complement(1143226..1143726) FT /locus_tag="ROD_10341" FT /note="HMMPfam hit to PF00589, Integrase, catalytic core, FT phage, score 0.0017" FT /inference="protein motif:PFAM:PF00589" FT repeat_region complement(1144134..1144141) FT /note="8 bp direct repeat flanking ISCro1" FT repeat_region complement(1144142..1146840) FT /note="Insertion sequence ISCro1. 1 of 21 intact ISCro1 FT elements in CR chromosome, all have 30 bp inverted repeats FT which contain 12 mismatches, and are flanked by direct FT repeats of varying length. This element has 8 bp direct FT repeats" FT repeat_region 1144142..1144171 FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT CDS complement(1144172..1145743) FT /transl_table=11 FT /locus_tag="ROD_10351" FT /product="ISCro1 transposase C" FT /db_xref="InterPro:IPR004291" FT /db_xref="InterPro:IPR024463" FT /db_xref="InterPro:IPR024474" FT /db_xref="UniProtKB/TrEMBL:D2TGY4" FT /protein_id="CBG87813.1" FT /translation="MDTSLAHENARLRALLQTQQDTIRQMAEYNRLLSQRVAAYASEIN FT RLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETLGEQYDPALPSAL FT RQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIETQR FT PKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQSEIYRRQGVEL FT SRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYV FT RDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYESGRITEAA FT CMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSAEQRLAARKARAASLMQ FT SLYDWIQTQMKTLSRHSDTAKAFAYLLKQWDSLNVYCSNGWVEIDNNIAENALRGVAVG FT RKNWLFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWK FT VDLSSQ" FT misc_feature complement(1144736..1145332) FT /locus_tag="ROD_10351" FT /note="HMMPfam hit to PF03050, Transposase, IS66, score FT 4.4e-129" FT /inference="protein motif:PFAM:PF03050" FT CDS complement(1145763..1146110) FT /transl_table=11 FT /locus_tag="ROD_10361" FT /product="ISCro1 transposase B" FT /db_xref="InterPro:IPR008878" FT /db_xref="UniProtKB/TrEMBL:D2TGY5" FT /protein_id="CBG87814.1" FT /translation="MISLPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFI FT FRGRRGDQIKVLWADSDGLCLFTKRLERGRFIWPVTRDGKVHLTPAQLSMLLEGINWKH FT PKRTERAGIRI" FT misc_feature complement(1145769..1146095) FT /locus_tag="ROD_10361" FT /note="HMMPfam hit to PF05717, Transposase (putative), IS66 FT Orf2 like, score 5.7e-70" FT /inference="protein motif:PFAM:PF05717" FT CDS complement(1146110..1146787) FT /transl_table=11 FT /locus_tag="ROD_10371" FT /product="ISCro1 transposase A" FT /db_xref="GOA:D2TGY6" FT /db_xref="InterPro:IPR002514" FT /db_xref="UniProtKB/TrEMBL:D2TGY6" FT /protein_id="CBG87815.1" FT /translation="MSIIFSGHYRMEYRTWITEALRLHFEEHLPRVVAGRRLGVPKSTV FT CSMFVRFRRAGLSWPLPAGMSEQELDACLYGQFSTVPVVRPESTVISETPVVKKRPRRP FT NFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQYRKGGLLPSGKNMPALLP FT VTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRLKGKLTPALLQTLIREIKG FT SSH" FT misc_feature complement(1146227..1146481) FT /locus_tag="ROD_10371" FT /note="HMMPfam hit to PF01527, Transposase IS3/IS911, score FT 2e-22" FT /inference="protein motif:PFAM:PF01527" FT misc_feature complement(1146638..1146703) FT /note="Predicted helix-turn-helix motif with score FT 1051.000, SD 2.77 at aa 29-50, sequence FT LPRVVAGRRLGVPKSTVCSMFV" FT repeat_region complement(1146811..1146840) FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT repeat_region complement(1146841..1146848) FT /note="8 bp direct repeat flanking ISCro1" FT CDS 1146862..1147917 FT /transl_table=11 FT /locus_tag="ROD_10381" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR011050" FT /db_xref="InterPro:IPR012334" FT /db_xref="UniProtKB/TrEMBL:D2TT04" FT /protein_id="CBG87816.1" FT /translation="MFYKPWGQDTASDVLIDLASSEDGKGDALIAVKQPYSDTVARTQH FT DLNTDYVNVKDWGAKGDGVTDDTAAIDAACAALTESSFITNFRRLYFPHGTYIYNGAGI FT VLPNGSSLIGEDLFTTIDASANTNTGYLITLTGFRSRVDTIALKGNKDNLGMKGISSYY FT NSDNGGVLNCILEDFHFGLDIDKCWYSVYRNIRFRRSSSSVVLTGAHIRLGFNHPSEEV FT NNLEFSNVWCAEPQKHSLAIYCRIQAIKFTGGSLETIGEARVKFYTTIIPYDVLIDNCY FT VENDISTGGVYLIEGQSTTQSVTVKDCMLRLGSTPGSLGKTYSLLRQRLVQFSKRHIKC FT QQYKSLVPSLP" FT CDS 1147982..1148488 FT /transl_table=11 FT /locus_tag="ROD_10391" FT /product="hypothetical prophage protein" FT /db_xref="InterPro:IPR002083" FT /db_xref="UniProtKB/TrEMBL:D2TT05" FT /protein_id="CBG87817.1" FT /translation="MHSTALHLDPRPQSIIDWNSIIPSYVNYKSNTSTSPVHVFKVYVP FT VGQNPRQMMLEISALTKSISETYIQGLEKYMIAITLPESSAAGTRIYVAKIHSSAKDNS FT SLLAVPSFTVTSNGYDSTTDACEYTISYRVSNATRLGTTTFVMSGVFTLNGLFTITPRW FT KIRRL" FT CDS complement(1148520..1149518) FT /transl_table=11 FT /locus_tag="ROD_10401" FT /product="putative prophage membrane protein" FT /db_xref="GOA:D2TT06" FT /db_xref="InterPro:IPR002656" FT /db_xref="UniProtKB/TrEMBL:D2TT06" FT /protein_id="CBG87818.1" FT /translation="MSTVAGRSYDIDLARTLSCFLVVMTHVTAYWNYKFQPVWEVVNFY FT NSLSRCAVPIFIMISGILLVKKDIDPATFYKKKFPKAIAALLAWSAFYYIFYDNNPTIT FT GFFIKILTGQAMYHLWYLYFLLGMYLITPIISLAYFGMSDKQRLFFFITIIVLFQFNVI FT KSLTGLSLQSKFNMDSIVTLSWYMFVGKYVYDLKDKIRSKIVLSVMFISSIAFTAIMNE FT WYSHYIGSPSQAFLDNFALNTFIAACSLLLLSTKVNFTYLNKISHKISGYTFAIYCIHP FT AILIPLKQTVWELSWGNSMTYFLPLVCVFMFIISLCISYILKSIPVIRYVC" FT misc_feature complement(1148532..1149497) FT /locus_tag="ROD_10401" FT /note="HMMPfam hit to PF01757, Acyltransferase 3, score FT 0.00015" FT /inference="protein motif:PFAM:PF01757" FT misc_feature complement(join(1148553..1148621,1148658..1148714, FT 1148733..1148801,1148844..1148912,1148931..1148984, FT 1149012..1149080,1149099..1149167,1149195..1149263, FT 1149324..1149383,1149426..1149482)) FT /locus_tag="ROD_10401" FT /note="10 probable transmembrane helices predicted for FT ROD10401 by TMHMM2.0 at aa 13-31, 46-65, 86-108, 118-140, FT 147-169, 179-196, 203-225, 240-262, 269-287 and 300-322" FT misc_feature complement(1148775..1148807) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 1149904..1150443 FT /transl_table=11 FT /locus_tag="ROD_10411" FT /product="putative phage lysozyme" FT /db_xref="GOA:D2TT07" FT /db_xref="InterPro:IPR002196" FT /db_xref="InterPro:IPR023346" FT /db_xref="InterPro:IPR023347" FT /db_xref="UniProtKB/TrEMBL:D2TT07" FT /protein_id="CBG87819.1" FT /translation="MATSKTKLSAAVLALVLSGASAPVILDQFLNEKEGNSFPAHKDGG FT GIWTICRGATMVDDKLVVQGMKLTQAKCDRVNAIERDKALAWVNLNIKVPLTEPQKAGI FT ASFCPYNIGPGKCFPSTFFKRINAGDRKGACEAIRWWIKDGGRDCRLTKGQKNGCYGQV FT ECRDQESALACWGIDQ" FT sig_peptide 1149904..1149981 FT /locus_tag="ROD_10411" FT /note="Signal peptide predicted for ROD10411 by SignalP 2.0 FT HMM (Signal peptide probability 0.992) with cleavage site FT probability 0.758 between residues 26 and 27" FT misc_feature 1150042..1150407 FT /locus_tag="ROD_10411" FT /note="HMMPfam hit to PF00959, Glycoside hydrolase, family FT 24, score 2.7e-27" FT /inference="protein motif:PFAM:PF00959" FT CDS 1150440..1150814 FT /transl_table=11 FT /locus_tag="ROD_10412" FT /product="putative prophage exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TT08" FT /protein_id="CBG87820.1" FT /translation="MTIKSKLLAQAVLLGMFAGAYYAGYQKGWYAHSDKINSEHAAKNK FT KAEKAVATGEQKAATASAEGKVIYRTIYRDVVKYVNDPNHTKCDFDDHAVQPRQRALDA FT ANSIRGFDAGTVQWSEKSRK" FT sig_peptide 1150440..1150508 FT /locus_tag="ROD_10412" FT /note="Signal peptide predicted for ROD10412 by SignalP 2.0 FT HMM (Signal peptide probability 0.941) with cleavage site FT probability 0.786 between residues 23 and 24" FT misc_feature 1150458..1150514 FT /locus_tag="ROD_10412" FT /note="1 probable transmembrane helix predicted for FT ROD10412 by TMHMM2.0 at aa 7-25" FT repeat_region 1151042..1151111 FT /note="70 bp perfect direct repeat of insertion site at FT RODt18" FT misc_feature 1151112..1154180 FT /note="CR_GI3" FT CDS complement(1151198..1151500) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10431" FT /product="putative integrase (fragment)" FT /note="pseudogene, N-terminus missing, fragment" FT /note="Similarity to prophage CP-933M is probably due to FT the same integration site in tRNAser" FT CDS complement(1151507..1151653) FT /transl_table=11 FT /locus_tag="ROD_10441" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TT09" FT /protein_id="CBG87822.1" FT /translation="MPHRYSSPRYRTLHHLRLNESQIAPLTIQHFPDRFSPAKNLLAGV FT KMI" FT CDS 1151862..1152482 FT /transl_table=11 FT /locus_tag="ROD_10451" FT /product="hypothetical protein" FT /db_xref="GOA:D2TT10" FT /db_xref="InterPro:IPR000595" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR012318" FT /db_xref="InterPro:IPR014710" FT /db_xref="InterPro:IPR018490" FT /db_xref="UniProtKB/TrEMBL:D2TT10" FT /protein_id="CBG87823.1" FT /translation="MFFYDIMPGRVKEKLETKIYNPNETILFAGRENNYIYFLMEGTAE FT AYIQSPHGTFATLHLYEKGSFFGEIEPFYDGRKPVEITAVTSCIAKRLYKTDFLSWLQS FT DFEATKFLIKELANKLIINAELVEHLLSLTVKERLLRSILIHSRRGTLQNLTKANLSKE FT INTPIRSLNRAISTCENEGIVSYSNNTFLIKDMTQLQKSVPYL" FT misc_feature 1151910..1152182 FT /locus_tag="ROD_10451" FT /note="HMMPfam hit to PF00027, Cyclic nucleotide-binding, FT score 1.7e-18" FT /inference="protein motif:PFAM:PF00027" FT misc_feature 1152033..1152080 FT /note="PS00225 Crystallins beta and gamma 'Greek key' motif FT signature." FT /inference="protein motif:Prosite:PS00225" FT CDS 1152550..1153470 FT /transl_table=11 FT /locus_tag="ROD_10461" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TT11" FT /protein_id="CBG87824.1" FT /translation="MDKICKRILEKIEIQDFFDRISPLNTADFNSVLLKLFLLRTAKSS FT PQKVLHTFRENRFVAPGSFDPIKLLQLELELLSMTSKAGITNKLLSPVAPIGSCSVFGC FT VNQNNVLSAVRNVEVLSDPSNILAIMLANDILNNQIDHTRCTHYATTTRVVRGQKWEGE FT NSYAHFGIFCIVSTAKDKGSYLCEKELLKHHLQFYDNLVQRRYHRKMTIVLRRRTGYTA FT YEDFFEEMYSVIKEVFPGTPVSVDLKSENNNYYKGINFKIYVQKDNEQIEIGDGGFVDW FT ISKMTRSKKNRCLISGLGLERLLLL" FT misc_feature 1152829..1152861 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1153438..1153467 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT /inference="protein motif:Prosite:PS00339" FT CDS 1153481..1153981 FT /transl_table=11 FT /locus_tag="ROD_10471" FT /product="hypothetical protein" FT /db_xref="GOA:D2TT12" FT /db_xref="InterPro:IPR000182" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:D2TT12" FT /protein_id="CBG87825.1" FT /translation="MELKEWSLDYVHDLVRHANNQNIARNLRNIFPYPYTEEDAVRFIE FT FCQTQDLQKTRNLAIVIDGQAVGGIGITVGSDIYEKSAELGYWLGEDYWGKGVMTKAVK FT QMVQLSFQNCNIIRLYAIVFSHNLGSCRLLEKNGFELEGVLKKAAYKNGHLYDSKLYAL FT LRE" FT misc_feature 1153652..1153900 FT /locus_tag="ROD_10471" FT /note="HMMPfam hit to PF00583, GCN5-related FT N-acetyltransferase, score 2.9e-14" FT /inference="protein motif:PFAM:PF00583" FT repeat_region 1154112..1154180 FT /note="direct repeat of 70 bp insertion site at RODt18, 1 FT bp deletion and 3 bp mismatch" FT CDS 1154407..1154559 FT /transl_table=11 FT /locus_tag="ROD_10481" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TT13" FT /protein_id="CBG87826.1" FT /translation="MVKRVIQLSVPLALCSPNSFWPVIIERLTDELSALGHWLVNVIAD FT DSSLT" FT CDS 1155047..1155163 FT /transl_table=11 FT /locus_tag="ROD_10491" FT /product="putative membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TT14" FT /protein_id="CBG87827.1" FT /translation="MSGFVGYTYNYQHLIMLGERRWVIVNLPVLYLFVLVSR" FT misc_feature 1155104..1155157 FT /locus_tag="ROD_10491" FT /note="1 probable transmembrane helix predicted for FT ROD10491 by TMHMM2.0 at aa 20-37" FT CDS 1155353..1155565 FT /transl_table=11 FT /locus_tag="ROD_10501" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TT15" FT /protein_id="CBG87828.1" FT /translation="MNKIPINLQVSPVLVKAYLPEFAATQVSFTRKVNELSVAGMDVLS FT SLCEYTERTQIHVKVRQSVRVRRKR" FT CDS join(1155571..1156023,1156025..1160476) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10521" FT /product="putative adhesin autotransporter (pseudogene)" FT /note="pseudogene, truncated by frameshift mutation" FT misc_feature 1159049..1159423 FT /locus_tag="ROD_10521" FT /note="HMMPfam hit to PF03212, Pertactin, score 1.1e-05" FT /inference="protein motif:PFAM:PF03212" FT misc_feature 1159613..1160449 FT /locus_tag="ROD_10521" FT /note="HMMPfam hit to PF03797, Autotransporter beta-domain, FT score 8e-41" FT /inference="protein motif:PFAM:PF03797" FT repeat_region 1160533..1160713 FT /note="IS200 family insertion sequence fragment. 94% DNA ID FT to IS200I. 5' end of IS element found at 1189291..1189738." FT CDS 1160668..1160712 FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10522" FT /product="IS200 family transposase (fragment)" FT /note="pseudogene, C-terminus missing, fragment" FT CDS 1161070..1161786 FT /transl_table=11 FT /locus_tag="ROD_10531" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR002876" FT /db_xref="InterPro:IPR017856" FT /db_xref="UniProtKB/TrEMBL:D2TT16" FT /protein_id="CBG87831.1" FT /translation="MGRKWANIVGKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELNS FT SLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFLQGRYEGFGPGGSMVIAETLTSNVN FT RTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGTDPDHIFEILLEAEVDVRDVTE FT DEGNIVIYTESTDLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGLVDAL FT EDDDDVQKVYHNVANL" FT misc_feature 1161076..1161777 FT /locus_tag="ROD_10531" FT /note="HMMPfam hit to PF01709, Protein of unknown function FT DUF28, score 6.1e-126" FT /inference="protein motif:PFAM:PF01709" FT CDS complement(1162019..1163299) FT /transl_table=11 FT /locus_tag="ROD_10541" FT /product="putative gluconate dehydrogenase subunit" FT /db_xref="GOA:D2TT17" FT /db_xref="InterPro:IPR003088" FT /db_xref="InterPro:IPR009056" FT /db_xref="InterPro:IPR014353" FT /db_xref="UniProtKB/TrEMBL:D2TT17" FT /protein_id="CBG87832.1" FT /translation="MTIKWKARLSILPLALLAAAVQAGTTSQNLNEGKQLAAAGDCIAC FT HTALGGQSYAGGLKMSTPIGAIYSTNITPDKETGIGNYSYDDFAKAVREGVAKDGRNLY FT PAMPYPSYAKINDRDLHILYDFFMHQVPAVKQQNRDSDIPWPLNMRWPLAVWNWVFHDD FT AAFKPDASQSAQWNRGAYLVQGLAHCGTCHTPRGIGFQEKALDQNDDAYLTGGTLEGWH FT APDLTGNVKNGLGRWSAQEIAQFLRTGRTDKSAAFGSMSDVVAHSTQYLSPDDLEAIAV FT YLKSLKSSDPQAVAPKADTETSLALIKGDMKKPGAQEYMDNCSACHRIDGQGYAKTFPA FT LAHNSAVLSDDPSSLISVVLRGSQMAITQNEPTGLMMPDFAWRLDDKQVADLLTFVRSS FT WGNNAPAVTADEVKELREEIKEIQKEK" FT misc_feature complement(1162100..1162366) FT /locus_tag="ROD_10541" FT /note="HMMPfam hit to PF00034, Cytochrome c, class I, score FT 4.4e-05" FT /inference="protein motif:PFAM:PF00034" FT misc_feature complement(1162316..1162333) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT /inference="protein motif:Prosite:PS00190" FT misc_feature complement(1162718..1162735) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT /inference="protein motif:Prosite:PS00190" FT misc_feature complement(1163159..1163176) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT /inference="protein motif:Prosite:PS00190" FT sig_peptide complement(1163231..1163299) FT /locus_tag="ROD_10541" FT /note="Signal peptide predicted for ROD10541 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.995 between residues 23 and 24" FT CDS complement(1163312..1165054) FT /transl_table=11 FT /locus_tag="ROD_10551" FT /product="putative gluconate dehydrogenase subunit" FT /db_xref="GOA:D2TT18" FT /db_xref="InterPro:IPR007867" FT /db_xref="UniProtKB/TrEMBL:D2TT18" FT /protein_id="CBG87833.1" FT /translation="MAIKKDPVDVVIVGFGWTGSLMAMELVDSGLKILALERGEARDTY FT PDFAYPRIADELTYGIRLKLFQNAAKETVTIRHTPSDTALPYRRFGSFLPGDGVGGAGV FT HWNGMLWRPLEADLKMRSTVIEKYGANFIPPDMTVQDYPFTYQEMEPFFDKYEKICGTA FT GQAGNVKGQILEGGNPFEAERQNPYPTKALKQQYSGILFSKAAKELGYHPFPVPAANCS FT EPYTNPYGVQLGVCNYCGFCERFGCFNYSKASPQACVLPALKQHSNFELRTESHVLRVN FT TDSTGTKATGVTYIDANGQEVEQPASLVVLSAFQLHNVRLLLLSKIGKPYDPVTGEGVV FT GRNYAYQMNGGISLFFNEDHNFNPFAATGTTGMFIDDFNAENFDHSELGFVGGATISAT FT ITGGRPIQQMPLPKDAPKWGSGWKKAIKESYLHTMSVGSSGSVMPYKQCYLDLDPTYKD FT LHGQPLLKMTHFIGTKAEEIVRTINPPHYEVGFKRMDAHYDVRPYQSTHTTGGAVMGDN FT PKTSVVNKYMQSWDVPNLFVLGACCFPQNLAYNPTGIVGATALFAAHAIRTQYLANPGP FT LVQA" FT misc_feature complement(1163870..1163893) FT /note="PS00318 Hydroxymethylglutaryl-coenzyme A reductases FT signature 2." FT /inference="protein motif:Prosite:PS00318" FT misc_feature complement(1163969..1165033) FT /locus_tag="ROD_10551" FT /note="HMMPfam hit to PF00732, Glucose-methanol-choline FT oxidoreductase, N-terminal, score 0.00044" FT /inference="protein motif:PFAM:PF00732" FT CDS complement(1165057..1165782) FT /transl_table=11 FT /locus_tag="ROD_10561" FT /product="putative gluconate dehydrogenase subunit" FT /db_xref="InterPro:IPR006311" FT /db_xref="UniProtKB/TrEMBL:D2TT19" FT /protein_id="CBG87834.1" FT /translation="MSNNENEGVPSRRRFLQQTLAIIPLTAMGSSLLTRSTFAAPASSE FT GVSAHYVPRFFNNEEWMFVLAATDRLIPADEYGPGAVSEGVPVFIDKQMELPYGYGHLW FT YMQGPFADAAPELGYQSHLVPRETWRRGIKAVNQWCQDKYQKNFAELTHPQQEEILRQL FT ESGALNFENVPGNVFFVQMLENTREGYLADPQHGGNQTMASWKLIGFPGARADYQQVMD FT NPGKPYSLGPVSISGKRSV" FT sig_peptide complement(1165666..1165782) FT /locus_tag="ROD_10561" FT /note="Signal peptide predicted for ROD10561 by SignalP 2.0 FT HMM (Signal peptide probability 0.939) with cleavage site FT probability 0.925 between residues 39 and 40" FT CDS 1166182..1167294 FT /transl_table=11 FT /locus_tag="ROD_10571" FT /product="putative outer membrane protein" FT /db_xref="InterPro:IPR002549" FT /db_xref="UniProtKB/TrEMBL:D2TT20" FT /protein_id="CBG87835.1" FT /translation="MRFNGLTKGFFLFLLVVVTWAFFDVLSPYFSAILWAAILTVIFYP FT VKNKLRTALGDRNGLASLLTLGIICLIVFIPLALILSSLAFELNVVYVKLQNNNAQFPE FT VIASLFAHMPDWAREFLADHNLDSAAEIQQKLSEVALKGGQYLAGSAFLIGKGTFGFAI FT SFGVMLYLLFFLLKDGPFLVRQILDSLPLSNFVKQHLFAKFAGVSRATVKGTVVVAIVQ FT GTLGGIAFYIAGIEGSILWGALMAFLSLIPAVGSAIVWGPAAIFLFSTQQLWQGFFIVG FT FFVVVVGLVDNILRPILVGKDTKMPDYLILITTLGGMEIYGINGFVIGPLVAALFIACW FT NILSGRDHEGNAEELDKEFIEDGITDDRSK" FT sig_peptide 1166182..1166289 FT /locus_tag="ROD_10571" FT /note="Signal peptide predicted for ROD10571 by SignalP 2.0 FT HMM (Signal peptide probability 0.870) with cleavage site FT probability 0.812 between residues 36 and 37" FT misc_feature join(1166194..1166250,1166260..1166319,1166356..1166424, FT 1166641..1166709,1166809..1166877,1166920..1166988, FT 1167007..1167075,1167133..1167201) FT /locus_tag="ROD_10571" FT /note="8 probable transmembrane helices predicted for FT ROD10571 by TMHMM2.0 at aa 5-23, 27-46, 59-81, 154-176, FT 210-232, 247-269, 276-298 and 318-340" FT misc_feature 1166197..1167213 FT /locus_tag="ROD_10571" FT /note="HMMPfam hit to PF01594, Protein of unknown function FT UPF0118, score 6.3e-46" FT /inference="protein motif:PFAM:PF01594" FT misc_feature 1167166..1167198 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1167336..1168415) FT /transl_table=11 FT /locus_tag="ROD_10581" FT /product="putative electron transport protein" FT /db_xref="GOA:D2TT21" FT /db_xref="InterPro:IPR001450" FT /db_xref="InterPro:IPR017896" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:D2TT21" FT /protein_id="CBG87836.1" FT /translation="MSEQKRTRWQRRPGTTGGKRPWNDWRNASSWRRATQLLLLAINLY FT IGVTFYYWVRYYETGGTSLYLPRPGGIEGWLPVAGLMNLRYTLETGALPPIHAAAMLLL FT AAFMLTSVLLKKAFCSWLCPIGTLSELIADLGKRLSGRNFSLPRFLDIPLRGVKYLLLI FT FFLSISLSMPAQGIQYFLMSAYGIIIDVKMLGFFRHIGTITLLSVALLVLLSLFVRNAW FT CRYLCPYGALLGLLSLLSPFKIRRNAQSCIDCGKCAKNCPSRIPVDKLIQVRTVECTGC FT MTCVESCPVASTLSFSLHTPKGDNLKHHGGLSGIAMTLLVCGILFASVALAMLMGVWDS FT PVPEHLYFRLIPEASMIGH" FT misc_feature complement(join(1167414..1167482,1167762..1167830, FT 1167873..1167941,1168074..1168142,1168254..1168307)) FT /locus_tag="ROD_10581" FT /note="5 probable transmembrane helices predicted for FT ROD10581 by TMHMM2.0 at aa 37-54, 92-114, 159-181, 196-218 FT and 312-334" FT misc_feature complement(1167534..1167605) FT /locus_tag="ROD_10581" FT /note="HMMPfam hit to PF00037, 4Fe-4S ferredoxin, FT iron-sulphur binding, score 0.00072" FT /inference="protein motif:PFAM:PF00037" FT misc_feature complement(1167549..1167584) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT /inference="protein motif:Prosite:PS00198" FT misc_feature complement(1167615..1167686) FT /locus_tag="ROD_10581" FT /note="HMMPfam hit to PF00037, 4Fe-4S ferredoxin, FT iron-sulphur binding, score 0.00019" FT /inference="protein motif:PFAM:PF00037" FT misc_feature complement(1167630..1167665) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT /inference="protein motif:Prosite:PS00198" FT CDS complement(1168533..1168838) FT /transl_table=11 FT /gene="cbpM" FT /locus_tag="ROD_10591" FT /product="chaperone-modulator protein" FT /db_xref="InterPro:IPR022835" FT /db_xref="UniProtKB/TrEMBL:D2TT22" FT /protein_id="CBG87837.1" FT /translation="MANVTFTFTVTEFCLHTGVTEEELNELVGLGVVEPYDDAASGWQF FT DDRAAAVVQRALRLHQELALDWPGIAVALTLLEDNRRLRQENRLLRQRLSRFIVHP" FT CDS complement(1168838..1169758) FT /transl_table=11 FT /gene="cbpA" FT /locus_tag="ROD_10601" FT /product="curved DNA-binding protein" FT /db_xref="GOA:D2TT23" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR002939" FT /db_xref="InterPro:IPR003095" FT /db_xref="InterPro:IPR008971" FT /db_xref="InterPro:IPR012724" FT /db_xref="InterPro:IPR018253" FT /db_xref="InterPro:IPR023859" FT /db_xref="UniProtKB/TrEMBL:D2TT23" FT /protein_id="CBG87838.1" FT /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDISKEPDAEAR FT FKEIAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQSGSQSYSAEDFDDIFSSIFGQ FT HGGHTRQRHASRGHDIEIEVAVFLEETLAEHRRTISYNLPVYNAFGMVEREIPKTLNVK FT IPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDVVNQDLEIVVPLAPWEA FT ALGAKIAVPTLKENILVTIPPGSQAGQRLRIKGKGLTGKKQTGDLYVVIKVVMPPNPDE FT RTAALWQQLAAAQSGFDPRKEWGKA" FT misc_feature complement(1168886..1169245) FT /gene="cbpA" FT /locus_tag="ROD_10601" FT /note="HMMPfam hit to PF01556, Chaperone DnaJ, C-terminal, FT score 1.1e-35" FT /inference="protein motif:PFAM:PF01556" FT misc_feature complement(1169561..1169746) FT /gene="cbpA" FT /locus_tag="ROD_10601" FT /note="HMMPfam hit to PF00226, Heat shock protein DnaJ, FT N-terminal, score 3.9e-34" FT /inference="protein motif:PFAM:PF00226" FT misc_feature complement(1169564..1169623) FT /note="PS00636 Nt-dnaJ domain signature." FT /inference="protein motif:Prosite:PS00636" FT CDS 1170015..1171256 FT /transl_table=11 FT /gene="agp" FT /locus_tag="ROD_10621" FT /product="glucose-1-phosphatase" FT /EC_number="3.1.3.10" FT /db_xref="GOA:D2TT24" FT /db_xref="InterPro:IPR000560" FT /db_xref="UniProtKB/TrEMBL:D2TT24" FT /protein_id="CBG87839.1" FT /translation="MKKTLIAAAVAGVVMLSSGAQAQTTPEGYQLQQVLMMSRHNLRAP FT LANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAAQGMVKSGECPAP FT DAVYAYANSLQRTVATAQFFITGAFPGCDVPVHHQEKMGTMDPTFNPVITDDSPTFSEQ FT AVRAMEKERAGMQLDDSYKLLEQMTRFKDSPSCKEKQLCSLTEAKDTFSAKYQQEPGVS FT GPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKTDQQWKVLSKLKNGYQDSLFTSVEVAR FT NVAAPLVKYIDKALVTDRLNAPKITVLVGHDSNIASLLTALDFKPYQLHDQHERTPIGG FT KIVFQRWHDGKGNRDLMKIEYVYQSAEQLRNAEVLTLKSPAQRVTLELKGCPIDANGFC FT PIDKFDALLNEAAK" FT sig_peptide 1170015..1170080 FT /gene="agp" FT /locus_tag="ROD_10621" FT /note="Signal peptide predicted for ROD10621 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT misc_feature 1170102..1171100 FT /gene="agp" FT /locus_tag="ROD_10621" FT /note="HMMPfam hit to PF00328, Histidine acid phosphatase, FT score 3.6e-55" FT /inference="protein motif:PFAM:PF00328" FT misc_feature 1170105..1170149 FT /note="PS00616 Histidine acid phosphatases phosphohistidine FT signature." FT /inference="protein motif:Prosite:PS00616" FT misc_feature 1170927..1170977 FT /note="PS00778 Histidine acid phosphatases active site FT signature." FT /inference="protein motif:Prosite:PS00778" FT CDS complement(1171290..1171517) FT /transl_table=11 FT /locus_tag="ROD_10631" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TT25" FT /protein_id="CBG87840.1" FT /translation="MPSQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKLAEKIWEE FT GSDEVLIKAFDKTDKDSLFWGEQTIERKNV" FT CDS complement(1171538..1172134) FT /transl_table=11 FT /gene="wrbA" FT /locus_tag="ROD_10641" FT /product="flavoprotein (Trp repressor-binding protein)" FT /db_xref="GOA:D2TT26" FT /db_xref="InterPro:IPR005025" FT /db_xref="InterPro:IPR008254" FT /db_xref="InterPro:IPR010089" FT /db_xref="UniProtKB/TrEMBL:D2TT26" FT /protein_id="CBG87841.1" FT /translation="MAKVLVLYYSMYGHIETMAHAVAEGARKVNGAEVVVKRVPETMAP FT EIFAKAGGKAQDAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALY FT GKIASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDISQVRGGTPYGAT FT TIAGGDGSRQPSPQELSIARYQGEYVAGLAVKLNG" FT misc_feature complement(1171730..1172119) FT /gene="wrbA" FT /locus_tag="ROD_10641" FT /note="HMMPfam hit to PF00258, Flavodoxin/nitric oxide FT synthase, score 5.1e-26" FT /inference="protein motif:PFAM:PF00258" FT CDS 1172520..1172693 FT /transl_table=11 FT /locus_tag="ROD_10651" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR019626" FT /db_xref="UniProtKB/TrEMBL:D2TT27" FT /protein_id="CBG87842.1" FT /translation="MANHRGGSGNFAEDRERASEAGRKGGQHSGGNFKNDPQRASEAGK FT KGGKSSGGNRNS" FT misc_feature 1172646..1172669 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 1172881..1173531 FT /transl_table=11 FT /gene="rutR" FT /locus_tag="ROD_10661" FT /product="rut operon repressor (TetR-family transcriptional FT regulator)" FT /db_xref="GOA:D2TT28" FT /db_xref="InterPro:IPR001647" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR011075" FT /db_xref="InterPro:IPR012287" FT /db_xref="InterPro:IPR013573" FT /db_xref="InterPro:IPR015893" FT /db_xref="InterPro:IPR023773" FT /db_xref="UniProtKB/TrEMBL:D2TT28" FT /protein_id="CBG87843.1" FT /translation="MAQQAENKAAKNTGKRSQAVSAKRQAILTAALNSFSQFGFHGTRI FT DQVAEYAGVSKTNLLYYYPSKEALYIAVLRQILDIWLAPLKAFREDFAPLEAIREYIRL FT KLEVSRDYPQASRLFCMEMLAGAPLLMDELTSDLKTLIDEKSALIAGWVRKGKLAPIDP FT HHLIFMIWASTQHYADFAPQVEAVTGATLPDEAFFNQTVENVQRMIIEGIRVR" FT misc_feature 1172959..1173099 FT /gene="rutR" FT /locus_tag="ROD_10661" FT /note="HMMPfam hit to PF00440, Transcriptional regulator, FT TetR-like, DNA-binding, bacterial/archaeal, score 9.6e-17" FT /inference="protein motif:PFAM:PF00440" FT misc_feature 1173100..1173528 FT /gene="rutR" FT /locus_tag="ROD_10661" FT /note="HMMPfam hit to PF08362, Transcriptional regulator, FT YcdC, C-terminal, score 3e-91" FT /inference="protein motif:PFAM:PF08362" FT CDS complement(1173528..1173923) FT /transl_table=11 FT /locus_tag="ROD_10671" FT /product="putative exported protein" FT /db_xref="InterPro:IPR009739" FT /db_xref="UniProtKB/TrEMBL:D2TT29" FT /protein_id="CBG87844.1" FT /translation="MKKIFLAGAALLLSASALADECANAATQADMNACAITQYQTADKK FT LNETFRNALERAAEPQRELLKKAQNAWIAVRDADCALIASGTEGGSAQVMIANQCLADK FT TDEREAFLASLLQCEEGDMSCPLPPAG" FT misc_feature complement(1173582..1173863) FT /locus_tag="ROD_10671" FT /note="HMMPfam hit to PF07007, Protein of unknown function FT DUF1311, score 1.1e-37" FT /inference="protein motif:PFAM:PF07007" FT sig_peptide complement(1173867..1173923) FT /locus_tag="ROD_10671" FT /note="Signal peptide predicted for ROD10671 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.997 between residues 19 and 20" FT CDS complement(1174025..1177987) FT /transl_table=11 FT /gene="putA" FT /locus_tag="ROD_10681" FT /product="bifunctional protein PutA" FT /EC_number="1.5.99.8" FT /EC_number="1.5.1.12" FT /db_xref="GOA:D2TT30" FT /db_xref="InterPro:IPR002872" FT /db_xref="InterPro:IPR005933" FT /db_xref="InterPro:IPR015590" FT /db_xref="InterPro:IPR016160" FT /db_xref="InterPro:IPR016161" FT /db_xref="InterPro:IPR016162" FT /db_xref="InterPro:IPR016163" FT /db_xref="InterPro:IPR024082" FT /db_xref="InterPro:IPR024089" FT /db_xref="InterPro:IPR024090" FT /db_xref="UniProtKB/TrEMBL:D2TT30" FT /protein_id="CBG87845.1" FT /translation="MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFTYLEKLE FT SEEALPELPALLAGAANESDEAVSPQEETHQPFLEFAEQILPQSVSRAAITAAWRRSET FT DAVSMLMEQARLPQPVAEQAHRLAYQLADKLRNQKTASGRAGMVQGLLQEFSLSSQEGV FT ALMCLAEALLRIPDKATRDALIRDKISNGNWHSHIGRSPSLFVNAATWGLLFTGKLVST FT HNEANLSRSLNRIIGKRGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFR FT YSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRA FT QYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGI FT GFVIQAYQKRCPFVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMEGLEGYPVYTR FT KVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYHLAGQNYYPGQYEFQCLHGMG FT EPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTTLP FT LDELVADPVEAVEKLAQQEGQSGLPHPKIPLPRDLYGKGRANSAGLDLANEHRLASLSS FT ALLNSALQKWQAKPVLEEAVAEGEMSPVVNPAEPKDIVGFAREASEAEVEQALQSAVNS FT APIWFATPPQERAAILHRAAVLMEGQMQTLIGILVREAGKTFSNAIAEVREAVDFLHYY FT AGQVRDDFDNETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAA FT QGIAILLEAGVPPGVVQLLPGRGETVGAKLTADSRVRGVMFTGSTEVATLLQRSIATRL FT DAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDDIA FT DHTLKMLRGAMAECRMGNPGRLTTDIGPVIDEEAKNNIERHIQAMRAKGRPVFQAVREN FT SDDAREWQSGTFVPPTLIELESFDELQKEVFGPVLHVVRYNRNSLEALIKQINASGYGL FT TLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLY FT RLLANRPENALSITLARQDAEYPVDAQLKTALIAPLEALSEWAANNPALRQLCQRFAEL FT AQAGTQRLLPGPTGERNTWSLLPRERVLCIADEEQDALVQLAAVMSVGSLALWPDDTLH FT RDLAKRLPAAVTARIQFAGADALTAQAFDAVIFHGDSDQLRALCEAVAAREGAIVSMQG FT FARGESNILLERLYIERSLSVNTAAAGGNASLMTIG" FT misc_feature complement(1174193..1174240) FT /note="PS00225 Crystallins beta and gamma 'Greek key' motif FT signature." FT /inference="protein motif:Prosite:PS00225" FT misc_feature complement(1174658..1176037) FT /gene="putA" FT /locus_tag="ROD_10681" FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase, FT score 2e-105" FT /inference="protein motif:PFAM:PF00171" FT misc_feature complement(1175225..1175260) FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT /inference="protein motif:Prosite:PS00070" FT misc_feature complement(1175321..1175344) FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT /inference="protein motif:Prosite:PS00687" FT misc_feature complement(1176266..1177306) FT /gene="putA" FT /locus_tag="ROD_10681" FT /note="HMMPfam hit to PF01619, Proline dehydrogenase, score FT 1.3e-191" FT /inference="protein motif:PFAM:PF01619" FT CDS complement(1178027..1178221) FT /transl_table=11 FT /locus_tag="ROD_10691" FT /product="putative membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TT31" FT /protein_id="CBG87846.1" FT /translation="MHSLTFFAVAPFKNVNYRREKENAIVYPLACLFSFINNSFIFKLV FT MQVTFNVVAQSCNMIDISR" FT misc_feature complement(1178051..1178083) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(1178084..1178152) FT /locus_tag="ROD_10691" FT /note="1 probable transmembrane helix predicted for FT ROD10691 by TMHMM2.0 at aa 24-46" FT CDS 1178383..1179891 FT /transl_table=11 FT /gene="putP" FT /locus_tag="ROD_10701" FT /product="sodium/proline symporter (proline permease)" FT /db_xref="GOA:D2TT32" FT /db_xref="InterPro:IPR001734" FT /db_xref="InterPro:IPR011851" FT /db_xref="InterPro:IPR018212" FT /db_xref="InterPro:IPR019900" FT /db_xref="UniProtKB/TrEMBL:D2TT32" FT /protein_id="CBG87847.1" FT /translation="MAISTPMLVTFCIYIFGMILIGFIAWRSTKNFDDYILGGRSLGPF FT VTALSAGASDMSGWLLMGLPGAIFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEHN FT NNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETA FT LWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQK FT SIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMAWMILC FT LAGAVAVGFFGIAYFNNNPAQAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMS FT TLSCQLLVCSSAITEDLYKAFLRKGASQQELVWVGRIMVLVVALVAIALAANPDNRVLG FT LVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMVIGAATVIIWKQFGWLDLYEIIPG FT FIFGSIGIVIFSLLGKAPSAAMMQRFAEADTHYHSAPPSRLQEN" FT misc_feature join(1178401..1178460,1178578..1178646,1178755..1178823, FT 1178866..1178934,1178953..1179021,1179079..1179147, FT 1179208..1179276,1179319..1179387,1179496..1179555, FT 1179583..1179651,1179664..1179732,1179745..1179801) FT /gene="putP" FT /locus_tag="ROD_10701" FT /note="12 probable transmembrane helices predicted for FT ROD10701 by TMHMM2.0 at aa 7-26, 66-88, 125-147, 162-184, FT 191-213, 233-255, 276-298, 313-335, 372-391, 401-423, FT 428-450 and 455-473" FT misc_feature 1178485..1179693 FT /gene="putP" FT /locus_tag="ROD_10701" FT /note="HMMPfam hit to PF00474, Na+/solute symporter, score FT 6e-217" FT /inference="protein motif:PFAM:PF00474" FT misc_feature 1178851..1178928 FT /note="PS00456 Sodium:solute symporter family signature 1." FT /inference="protein motif:Prosite:PS00456" FT misc_feature 1179382..1179414 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 1180241..1180966 FT /transl_table=11 FT /gene="efeU" FT /locus_tag="ROD_10711" FT /product="ferrous iron permease" FT /db_xref="GOA:D2TT33" FT /db_xref="InterPro:IPR004923" FT /db_xref="UniProtKB/TrEMBL:D2TT33" FT /protein_id="CBG87848.1" FT /translation="MMWIGVFLAAALCLALGVFINETTGEFPQKEQELFEGIVAVIAVV FT ILTWMVFWMRKVSRNVRVQLEQAVDNALQRGNHHGWALILMVFFAVAREGLESVFFLLA FT AFQQDVGIWPPIGAVLGLAVAVALGFLLYWGGVRLNLGAFFKWTSLFILLVAAGLAAGA FT IRAFHEAGLWNHFQQIAFDMSGVLSTHSLAGTLMEGIFGYQEAPSVSEVAVWFIYFIPA FT LVLFAMPPRAGTTASRAAP" FT misc_feature 1180241..1180960 FT /gene="efeU" FT /locus_tag="ROD_10711" FT /note="HMMPfam hit to PF03239, Iron permease FTR1, score FT 9.4e-68" FT /inference="protein motif:PFAM:PF03239" FT sig_peptide 1180241..1180306 FT /gene="efeU" FT /locus_tag="ROD_10711" FT /note="Signal peptide predicted for ROD10711 by SignalP 2.0 FT HMM (Signal peptide probability 0.647) with cleavage site FT probability 0.252 between residues 22 and 23" FT misc_feature join(1180244..1180312,1180340..1180399,1180481..1180549, FT 1180577..1180645,1180664..1180732,1180874..1180927) FT /gene="efeU" FT /locus_tag="ROD_10711" FT /note="6 probable transmembrane helices predicted for FT ROD10711 by TMHMM2.0 at aa 2-24, 34-53, 81-103, 113-135, FT 142-164 and 212-229" FT misc_feature 1180784..1180816 FT /note="PS00435 Peroxidases proximal heme-ligand signature." FT /inference="protein motif:Prosite:PS00435" FT CDS 1181023..1182150 FT /transl_table=11 FT /locus_tag="ROD_10721" FT /product="putative exported protein" FT /db_xref="InterPro:IPR008972" FT /db_xref="InterPro:IPR018976" FT /db_xref="UniProtKB/TrEMBL:D2TT34" FT /protein_id="CBG87849.1" FT /translation="MTNNFRRSALLPGMAALFASALTAHAADIPKVNVTVTDKQCEPMT FT LTVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTASLQPGEYEMTCG FT LLSNLKGKLIVKGSSTADADKSDALLSLGSAITDYKKYVTAETAQLVAGTKAFTDAVKA FT GDIEKAKSLYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKA FT LFGDNSVEGMEKYADQLYADVQDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEED FT RYSHTDLWDFQANVDGAQKIVNLLRPQLQKANAELLVKVDANFKKVDVILAKYRTQDGF FT ETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD" FT sig_peptide 1181023..1181100 FT /locus_tag="ROD_10721" FT /note="Signal peptide predicted for ROD10721 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.998 between residues 26 and 27" FT misc_feature 1181377..1182138 FT /locus_tag="ROD_10721" FT /note="HMMPfam hit to PF04302, Protein of unknown function FT DUF451, score 8.7e-172" FT /inference="protein motif:PFAM:PF04302" FT CDS 1182156..1183427 FT /transl_table=11 FT /locus_tag="ROD_10731" FT /product="putative peroxidase" FT /db_xref="GOA:D2TT35" FT /db_xref="InterPro:IPR006311" FT /db_xref="InterPro:IPR006313" FT /db_xref="InterPro:IPR006314" FT /db_xref="InterPro:IPR011008" FT /db_xref="UniProtKB/TrEMBL:D2TT35" FT /protein_id="CBG87850.1" FT /translation="MQYDDQHGVSEPSRRRLLKGIGALALAGSCPVAHARTPQSAPGTL FT SPDARGETQPFYGAHQAGILTPQQASMMLVAFDVLASDRADLERLFRLLTTRMAFLTAG FT GPAPETPNPRLPPMDSGILGAYIAPDNLTMTLSVGHSLFDERFGLQAQRPKALQKMTRF FT PNDSLDAALCHGDLLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSK FT GKETPVNLLGFKDGTANPDSRNEKLMQAVVWVTPEQDEPAWTTGGSYQAVRVIQFRVEF FT WDRTPLKEQQTIFGRDKQTGAPLGMQHEHDEPDYASDPDGNVIALDSHIRLANPRTPQT FT QSSLMMRRGYSYSLGVTGSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIG FT GGYFFALPGVKDANHYLGQSLLEA" FT sig_peptide 1182156..1182260 FT /locus_tag="ROD_10731" FT /note="Signal peptide predicted for ROD10731 by SignalP 2.0 FT HMM (Signal peptide probability 0.850) with cleavage site FT probability 0.849 between residues 35 and 36" FT misc_feature 1182213..1182245 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1182336..1183388 FT /locus_tag="ROD_10731" FT /note="HMMPfam hit to PF04261, Dyp-type peroxidase, score FT 1.7e-183" FT /inference="protein motif:PFAM:PF04261" FT CDS join(1183658..1183813,1183813..1184718) FT /pseudo FT /transl_table=11 FT /gene="phoH" FT /locus_tag="ROD_10751" FT /product="phosphate starvation-inducible protein PhoH FT (pseudogene)" FT /note="pseudogene, truncated by frameshift mutation" FT /note="N-terminus is frameshifted compared to the E. coli FT homologue, which has been overexpressed and N-terminal aa FT sequenced. The C. rodentium frameshifted N-terminus is FT absent from homologues in other enterics including FT Salonella, Yersinia and Erwinia." FT misc_feature 1184098..1184718 FT /gene="phoH" FT /locus_tag="ROD_10751" FT /note="HMMPfam hit to PF02562, PhoH-like protein, score FT 5.1e-138" FT /inference="protein motif:PFAM:PF02562" FT misc_feature 1185005..1194883 FT /note="CR_GI4" FT repeat_region 1185005..1185022 FT /note="18 bp direct repeat, 1 bp mismatch" FT CDS 1185170..1185379 FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10762" FT /product="putative integrase (fragment)" FT /note="pseudogene, C-terminus missing, fragment" FT CDS 1185397..1185615 FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10771" FT /product="putative DNA helicase (fragment)" FT /note="pseudogene, N- and C-termini missing, fragment" FT CDS 1186252..1187898 FT /transl_table=11 FT /gene="espL2" FT /locus_tag="ROD_10781" FT /product="putative T3SS effector EspL2" FT /db_xref="InterPro:IPR012927" FT /db_xref="UniProtKB/TrEMBL:D2TT36" FT /protein_id="CBG87854.1" FT /translation="MPVVNNTEYFSKNNQPYLSKKRDASINLNGQISDNNGKIIWCRHI FT ASYWSDFFCSNSGKIDYKTFSSAQLLSKSIVINENTGTNNINGDVYFVENESWGRVIYN FT IFLQMEKENKACLSLGIHSPGHQMALGMKIKKDKEDKFVINFYDPNQTATHQRVFFCAK FT NIIDARKLTAYDFLSEPCLKCYGLKEEILSLFVDRTTSIENNNVSIKKLPDNPLQSVVV FT NFAMGAGLSEVIKNVYNDTRFVELTKSQMETLCEAKNVNGDPGLLLALQNGNENAIDEY FT GILIKKSNINKEKLTHILSARTLDRAIPGLYQALQNGHAQAIKNYGKLVLDVIDKNRDL FT EYLFSAFKCEPHAPNKYTPGLFAAFKNSHSDAIQAYCDVLKNSNLTKSDIIRILEARNY FT DGVPGLLLAYQSGDINTIQVFFDSLILLDIPKDVIEELLTAKYYDFTGLSLAITHGHAQ FT VVQLYGKLFKKLDTSPCRMSSILALAINCERDNVNVIIGGEYKLNKAVKEYIDLLKEFD FT IYPERLTEHLSEFSSRHLLDVYGYYSNEYNN" FT misc_feature 1186255..1187028 FT /gene="espL2" FT /locus_tag="ROD_10781" FT /note="HMMPfam hit to PF07906, ShET2 enterotoxin, FT N-terminal, score 7.2e-123" FT /inference="protein motif:PFAM:PF07906" FT repeat_region 1188083..1188784 FT /note="IS200 family insertion sequence. 92% DNA ID to FT IS200I" FT CDS join(1188218..1188274,1188274..1188288,1188292..1188672) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10791" FT /product="IS200 family transposase (pseudogene)" FT /note="pseudogene, fragmented by multiple mutations. FT Lacking start codon due to missense mutation at N-terminus, FT also truncated by frameshift mutation and premature stop FT codon" FT misc_feature join(1188272..1188274,1188274..1188288,1188292..1188582) FT /locus_tag="ROD_10791" FT /note="HMMPfam hit to PF01797, Transposase IS200-like, FT score 2.1e-62" FT /inference="protein motif:PFAM:PF01797" FT repeat_region 1188783..1189281 FT /note="Insertion sequence ISCro3 fragment. 5' end of FT ISCro3, but missing inverted repeat ends. Disrupted by FT IS200I-like element insertion and subsequent degradation. FT The 3' end is found downstream of the interrupting IS FT element" FT CDS 1188785..1189279 FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10801" FT /product="ISCro3 transposase (fragment)" FT /note="pseudogene, N-terminal 165aa of ISCro3 transposase, FT fragment. C-terminal region is found downstream of adjacent FT IS element fragment" FT repeat_region 1189291..1189738 FT /note="IS200 family insertion sequence fragment. 88% DNA ID FT to IS200F. 5' end of this element has been deleted, FT possibly by adjacent ISCro3, and is found at FT 1160533..1160713." FT CDS 1189291..1189626 FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10811" FT /product="IS200 family transposase (fragment)" FT /note="pseudogene, N-terminal 40 aa missing, fragment" FT misc_feature 1189291..1189536 FT /locus_tag="ROD_10811" FT /note="HMMPfam hit to PF01797, Transposase IS200-like, FT score 7.7e-39" FT /inference="protein motif:PFAM:PF01797" FT CDS 1189891..1190355 FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10821" FT /product="ISCro3 transposase (fragment)" FT /note="pseudogene, N- and C-termini missing, fragment. aa FT 283 to 422 of ISCro3 transposase. Terminal 23 aa of the FT transposase are missing, part of N-terminus is upstream of FT adjacent IS200-family IS element fragment" FT repeat_region 1189891..1190354 FT /note="Insertion sequence ISCro3 fragment. 3' end of FT ISCro3, but missing inverted repeat ends. Disrupted by FT IS200-family element insertion and subsequent degradation. FT The 5' end is found upstream of the interrupting IS FT element" FT misc_feature 1189969..1190160 FT /locus_tag="ROD_10821" FT /note="HMMPfam hit to PF01609, Transposase, IS4-like, score FT 2.1e-14" FT /inference="protein motif:PFAM:PF01609" FT CDS 1190611..1191600 FT /transl_table=11 FT /gene="nleB1" FT /locus_tag="ROD_10831" FT /product="T3SS effector protein NleB1" FT /db_xref="UniProtKB/TrEMBL:D2TT37" FT /protein_id="CBG87859.1" FT /translation="MLSPLNVLQFNFRGETALSDSAPLQTVSFAGKDYSMEPIDEKTPI FT LFQWFEARPERYGKGEVPILNTKEHPYLSNIINAAKIENERVIGVLVDGDFTYEQRKEF FT LSLEDEHQNIKIIYRENVDFSMYDKKLSDIYLENIHEQESYPASERDNYLLGLLREELK FT NIPYGKDSLIESYAEKRGHTWFDFFRNLAVLKGGGLFTETGKTGCHNISPCGGCIYLDA FT DMIITDKLGVLYAPDGIAVYVDCNDNRKSLENGAIVVNRSNHPALLAGLDIMKSKVDAH FT PYYDGVGKGLKRHFNYSSLQDYNVFCNFIEFKHKNIIPNTSMYTNSSW" FT CDS 1191643..1192335 FT /transl_table=11 FT /gene="nleE" FT /locus_tag="ROD_10841" FT /product="T3SS effector protein NleE" FT /db_xref="UniProtKB/TrEMBL:D2TT38" FT /protein_id="CBG87860.1" FT /translation="MINPITNTQNLLSINTKHAEYVVKNIYPEIEHNYFNEPPNVYDKK FT YISGVTRGVAELKQEGFINEKARRLAYMQAMYSVCPEEFKPISRNEASTPEGSWLTVIS FT GKRPMGQFSVDSLYHPDLHALCELPDICCKIFPKENNDFLYIVIVYRNDSPLGEQRANR FT FIELYNIKRDIMQELNYESPELKAVKSEMIIAREMGEIFGYVLEEIDSYMKNMNNKLAQ FT IEARRSAT" FT CDS complement(join(1192570..1192956,1192960..1193214, FT 1193216..1193332)) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10851" FT /product="putative IS21 family transposase (pseudogene)" FT /note="pseudogene, truncated by frameshift mutation and FT premature stop codon" FT repeat_region complement(1192570..1193332) FT /note="putative IS21 family insertion sequence fragment. FT 93% DNA ID to ISSso4" FT misc_feature complement(join(1192642..1192956,1192960..1193175)) FT /locus_tag="ROD_10851" FT /note="HMMPfam hit to PF01695, IstB-like ATP-binding FT protein, score 5.1e-54" FT /inference="protein motif:PFAM:PF01695" FT misc_feature complement(join(1193176..1193214,1193216..1193269)) FT /locus_tag="ROD_10851" FT /note="HMMPfam hit to PF08483, IstB-like ATP binding FT N-terminal, score 1.3e-10" FT /inference="protein motif:PFAM:PF08483" FT CDS 1193525..1193809 FT /transl_table=11 FT /locus_tag="ROD_10871" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR009301" FT /db_xref="UniProtKB/TrEMBL:D2TT39" FT /protein_id="CBG87862.1" FT /translation="MASVSFIWMPAPDVCRACPLSTGNPEIHNIKSLTTEMALDILIAW FT LQDNIDCESGIIFDNNGDKTDSAALLPCIEQTWEDIRTLRHLQLLQQKR" FT misc_feature 1193612..1193806 FT /locus_tag="ROD_10871" FT /note="HMMPfam hit to PF06117, Protein of unknown function FT DUF957, enterobacteria, score 5.4e-44" FT /inference="protein motif:PFAM:PF06117" FT CDS join(1193894..1194085,1194087..1194350,1194352..1194735) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_10891" FT /product="conserved hypothetical protein (pseudogene)" FT /note="pseudogene, truncated by two frameshift mutations" FT repeat_region 1194884..1194901 FT /note="18 bp direct repeat, 1 bp mismatch" FT tRNA complement(1194891..1194975) FT /locus_tag="ROD_t19" FT /product="transfer RNA-Ser" FT /anticodon=(pos:1194939..1194941,aa:Ser) FT /note="tRNA Ser anticodon GGA, Cove score 53.14" FT CDS 1195209..1196147 FT /transl_table=11 FT /locus_tag="ROD_10911" FT /product="putative 2-hydroxyacid dehydrogenase" FT /db_xref="GOA:D2TT40" FT /db_xref="InterPro:IPR006140" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR023514" FT /db_xref="UniProtKB/TrEMBL:D2TT40" FT /protein_id="CBG87864.1" FT /translation="MEIIFYHPTFDVSWWIAALEKAIPEARVRQWKEGDNNPADYALVW FT HPPVEMLEGRKLKAVFALGAGVDSILSKLKAHPTMLDASVPLFRLEDTGMGLQMQEYAV FT SQVLHWFRRFDDYQALKNQGQWQPLPEYTREEFTVGIMGAGVLGAKVAESLQRWGFPLR FT CWSRSRKSWPGVESYAGMEELDAFLSKTRVLINLLPNTAETVGIINGERLNQLQDGAYL FT LNLARGVHVVEEDLIGALNSEKLKGAMLDVFSREPLPADSPLWKHPRVAMTPHVAAVTR FT PAQAVEYISRTIRQLEKGEAVSGQVDRDRGY" FT misc_feature 1195518..1196039 FT /locus_tag="ROD_10911" FT /note="HMMPfam hit to PF02826, D-isomer specific FT 2-hydroxyacid dehydrogenase, NAD-binding, score 2e-49" FT /inference="protein motif:PFAM:PF02826" FT misc_feature 1195854..1195904 FT /note="PS00671 D-isomer specific 2-hydroxyacid FT dehydrogenases signature 3." FT /inference="protein motif:Prosite:PS00671" FT CDS 1196280..1197017 FT /transl_table=11 FT /locus_tag="ROD_10921" FT /product="putative phosphoesterase" FT /db_xref="GOA:D2TT41" FT /db_xref="InterPro:IPR003141" FT /db_xref="InterPro:IPR004013" FT /db_xref="InterPro:IPR016195" FT /db_xref="InterPro:IPR023710" FT /db_xref="UniProtKB/TrEMBL:D2TT41" FT /protein_id="CBG87865.1" FT /translation="MYPVDLHMHTVASTHAYSTLSDYITQAKRQGLKLFAITDHGPDMA FT DAPHHWHFINMRIWPRVVDGVGILRGIEANIKNLDGEIDCTGPMLDSLDLIIAGFHEPV FT FAPQDKAANTRAMIATMASGVVHIISHPGNPKYPVDITAIAEAAARYQVALEINNSSFL FT HSRKGSEANCRAVAAAVRDAGGWVALGSDSHTAFTMGDFSECRKILDDVDFPEDRILNV FT TPARLLNFLESRGMAPIPEFADL" FT misc_feature 1196289..1196870 FT /locus_tag="ROD_10921" FT /note="HMMPfam hit to PF02811, PHP, C-terminal, score FT 1.4e-42" FT /inference="protein motif:PFAM:PF02811" FT CDS 1197041..1197595 FT /transl_table=11 FT /locus_tag="ROD_10931" FT /product="putative chaperone" FT /db_xref="InterPro:IPR020945" FT /db_xref="UniProtKB/TrEMBL:D2TT42" FT /protein_id="CBG87866.1" FT /translation="MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLSANWPLEQD FT ELLTRLQKSCDMAQLAADYNALFVGTGCAVPPYRSAWVEGATEAEVRAFLSARGMPLAD FT TPADHIGTLLLAASWLEDQSAEDESEALETLFAEYILPWCGTFLGKVEAHATTPFWRTM FT APLTRDAIGAMWDELEENSAE" FT misc_feature 1197107..1197493 FT /locus_tag="ROD_10931" FT /note="HMMPfam hit to PF06192, Cytoplasmic chaperone TorD, FT score 1.1e-46" FT /inference="protein motif:PFAM:PF06192" FT CDS 1197647..1198177 FT /transl_table=11 FT /locus_tag="ROD_10941" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR009476" FT /db_xref="UniProtKB/TrEMBL:D2TT43" FT /protein_id="CBG87867.1" FT /translation="MCAISFVAAFSAIMRRMNRLLPIAITTGILSGVWGWVAVSFGLLS FT WAGFLGCTAYFACPQGGLKGLVISAATLLSGVVWALVIIHGSALTPHLAIVGYVMTGFV FT AFLMCLQAKQTLLSFVPGTFIGACATFAGQGDWALVLASLAVGLLFGYAMKNSGLWLAS FT RRERQGVRAVASK" FT misc_feature 1197695..1198150 FT /locus_tag="ROD_10941" FT /note="HMMPfam hit to PF06496, Protein of unknown function FT DUF1097, score 7.9e-91" FT /inference="protein motif:PFAM:PF06496" FT misc_feature join(1197704..1197757,1197767..1197820,1197839..1197898, FT 1197908..1197976,1197989..1198048,1198061..1198129) FT /locus_tag="ROD_10941" FT /note="6 probable transmembrane helices predicted for FT ROD10941 by TMHMM2.0 at aa 20-37, 41-58, 65-84, 88-110, FT 115-134 and 139-161" FT misc_feature 1197770..1197802 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1197998..1198030 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1198237..1199070) FT /transl_table=11 FT /gene="csgG" FT /locus_tag="ROD_10951" FT /product="curli production assembly/transport component" FT /db_xref="GOA:D2TT44" FT /db_xref="InterPro:IPR005534" FT /db_xref="UniProtKB/TrEMBL:D2TT44" FT /protein_id="CBG87868.1" FT /translation="MQRLLILIAVTLLSGCLTTPPKEAAKPTLMPRAQSYKDLTHLPVP FT TGKIFVSVYNIQDETGQFKPYPASNFSTAVPQSATAMLVTALKDSRWFIPLERQGLQNL FT LNERKIIRAAQENGTVAINNRIPLPSLTAANIMVEGSIIGYESNVKSGGAGARYFGIGA FT DTQYQLDQIAVNLRVVNVSTGEILSSVNTSKTILSYEVQAGVFRFIDYQRLLEGEIGYT FT SNEPVMLCLMSAIETGVIFLINDGIDRGLWDLQNKADRQNDILVKYRQMSVPPES" FT misc_feature complement(1198315..1199052) FT /gene="csgG" FT /locus_tag="ROD_10951" FT /note="HMMPfam hit to PF03783, Curli production FT assembly/transport component CsgG, score 1.6e-123" FT /inference="protein motif:PFAM:PF03783" FT sig_peptide complement(1198996..1199070) FT /gene="csgG" FT /locus_tag="ROD_10951" FT /note="Signal peptide predicted for ROD10951 by SignalP 2.0 FT HMM (Signal peptide probability 0.938) with cleavage site FT probability 0.723 between residues 25 and 26" FT misc_feature complement(1199023..1199055) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1199096..1199512) FT /transl_table=11 FT /gene="csgF" FT /locus_tag="ROD_10961" FT /product="curli production assembly/transport component" FT /db_xref="InterPro:IPR018893" FT /db_xref="UniProtKB/TrEMBL:D2TT45" FT /protein_id="CBG87869.1" FT /translation="MCVKHAVVALMLISPLSWAGNMTFQFRNPNFGGNPNNGSFLLNSA FT QAQNSYKDPSYDDDYGVEMPSALDNFTQAIQSQILGGLLTNINTGKPGRMVTNDFIVDI FT ANRDGQLQLNVTDRKTGKTSTIEVSGLQSQSTDF" FT sig_peptide complement(1199456..1199512) FT /gene="csgF" FT /locus_tag="ROD_10961" FT /note="Signal peptide predicted for ROD10961 by SignalP 2.0 FT HMM (Signal peptide probability 0.982) with cleavage site FT probability 0.982 between residues 19 and 20" FT CDS complement(1199539..1199928) FT /transl_table=11 FT /gene="csgE" FT /locus_tag="ROD_10971" FT /product="curli production assembly/transport component" FT /db_xref="InterPro:IPR018900" FT /db_xref="UniProtKB/TrEMBL:D2TT46" FT /protein_id="CBG87870.1" FT /translation="MKRYLSWLLAAHCLLAGGQLHAVEVEVPGLLTDHTVSSVGHDFYR FT AFSEKWESEYTGNLTINERPSARWGSWITITINQDVIFQTFLFPTKRDFERTVVFALAQ FT TEEALNRRQIDQALLSTGDLTHDEF" FT misc_feature complement(1199854..1199886) FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT /inference="protein motif:Prosite:PS00626" FT sig_peptide complement(1199863..1199928) FT /gene="csgE" FT /locus_tag="ROD_10971" FT /note="Signal peptide predicted for ROD10971 by SignalP 2.0 FT HMM (Signal peptide probability 0.994) with cleavage site FT probability 0.983 between residues 22 and 23" FT CDS complement(1199933..1200583) FT /transl_table=11 FT /gene="csgD" FT /locus_tag="ROD_10981" FT /product="probable CsgAB operon transcriptional regulator" FT /db_xref="GOA:D2TT47" FT /db_xref="InterPro:IPR000792" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR016032" FT /db_xref="UniProtKB/TrEMBL:D2TT47" FT /protein_id="CBG87871.1" FT /translation="MYNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAVSGKLHNIQR FT SLDDIPAGSIVLVDMMEADKKLIHYWQENLARKNNNIRTLLLNTPEDYPYRDIESWPHI FT NGVFYVTEDEERVVYGLQGILRGECYFSQKLASYLITHSGNYRYNGTESALLTHREKEI FT LNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR" FT misc_feature complement(1199954..1200127) FT /gene="csgD" FT /locus_tag="ROD_10981" FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT protein, LuxR, score 2.4e-21" FT /inference="protein motif:PFAM:PF00196" FT misc_feature complement(1199993..1200076) FT /note="PS00622 Bacterial regulatory proteins, luxR family FT signature." FT /inference="protein motif:Prosite:PS00622" FT CDS 1201327..1201782 FT /transl_table=11 FT /gene="csgB" FT /locus_tag="ROD_11001" FT /product="minor curlin subunit" FT /db_xref="GOA:D2TT48" FT /db_xref="InterPro:IPR009742" FT /db_xref="UniProtKB/TrEMBL:D2TT48" FT /protein_id="CBG87872.1" FT /translation="MKNKLLFMMFTLLGVPGMTAAAGPDLAGAEYNFAVNELSKSSFNQ FT AAIIGQVGTNNSAKIRQDGSKLLSVVSQEGGSNRANVDQSGTYNFAYIDQTGNANDASI FT SQSNYGNTAMIIQKGSGNKANITQYGTQKTAVVVQRQSQMAIRVTQR" FT sig_peptide 1201327..1201389 FT /gene="csgB" FT /locus_tag="ROD_11001" FT /note="Signal peptide predicted for ROD11001 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.716 between residues 21 and 22" FT misc_feature 1201483..1201584 FT /gene="csgB" FT /locus_tag="ROD_11001" FT /note="HMMPfam hit to PF07012, Curlin associated, score FT 1.8e-10" FT /inference="protein motif:PFAM:PF07012" FT misc_feature 1201615..1201716 FT /gene="csgB" FT /locus_tag="ROD_11001" FT /note="HMMPfam hit to PF07012, Curlin associated, score FT 6.9e-09" FT /inference="protein motif:PFAM:PF07012" FT CDS 1201823..1202278 FT /transl_table=11 FT /gene="csgA" FT /locus_tag="ROD_11011" FT /product="major curlin subunit" FT /db_xref="GOA:D2TT49" FT /db_xref="InterPro:IPR009742" FT /db_xref="UniProtKB/TrEMBL:D2TT49" FT /protein_id="CBG87873.1" FT /translation="MKLLQVAAFAAIVVSGSALAGSVPQWGGGGNHGGGGSSTGPESTL FT SIYQSGVNNAALALQSDARKSETTIRQDGFGNGADVGQGADNSTIELTQSGFRNNATID FT QWNGKNSDISVSQYGGNNAALVNQTASDSSVLVSQVGFGNNATANQY" FT sig_peptide 1201823..1201882 FT /gene="csgA" FT /locus_tag="ROD_11011" FT /note="Signal peptide predicted for ROD11011 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.997 between residues 20 and 21" FT misc_feature 1201940..1202044 FT /gene="csgA" FT /locus_tag="ROD_11011" FT /note="HMMPfam hit to PF07012, Curlin associated, score FT 2e-07" FT /inference="protein motif:PFAM:PF07012" FT misc_feature 1202075..1202179 FT /gene="csgA" FT /locus_tag="ROD_11011" FT /note="HMMPfam hit to PF07012, Curlin associated, score FT 6.1e-14" FT /inference="protein motif:PFAM:PF07012" FT misc_feature 1202180..1202245 FT /gene="csgA" FT /locus_tag="ROD_11011" FT /note="HMMPfam hit to PF07012, Curlin associated, score FT 0.012" FT /inference="protein motif:PFAM:PF07012" FT CDS 1202340..1202672 FT /transl_table=11 FT /gene="csgC" FT /locus_tag="ROD_11021" FT /product="putative curli production protein csgc precursor" FT /db_xref="InterPro:IPR014491" FT /db_xref="UniProtKB/TrEMBL:D2TT50" FT /protein_id="CBG87874.1" FT /translation="MNSFILVAALSSQIAFSTTQQGDVYTIIPQVTLAQPCVCQVQILA FT LREGVAGQSRSQQKKTLSLPANQPIDLTKLSLTISPQDNVKIIVTVSDGQAMHLSQQWP FT PPATSS" FT sig_peptide 1202340..1202390 FT /gene="csgC" FT /locus_tag="ROD_11021" FT /note="Signal peptide predicted for ROD11021 by SignalP 2.0 FT HMM (Signal peptide probability 0.981) with cleavage site FT probability 0.479 between residues 17 and 18" FT CDS 1202798..1203121 FT /transl_table=11 FT /locus_tag="ROD_11031" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TT51" FT /protein_id="CBG87875.1" FT /translation="MQPLSAVKRTVLSLGLITLFAAAAMADADRQGGVIHFSGEIVEPP FT CDISRSEQRLALSCSREGQTETRYYSFHELTTAPQHFKGIASVEMQYIDKQNKLAVMNI FT VYH" FT sig_peptide 1202798..1202875 FT /locus_tag="ROD_11031" FT /note="Signal peptide predicted for ROD11031 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.978 between residues 26 and 27" FT CDS 1203181..1203744 FT /transl_table=11 FT /locus_tag="ROD_11041" FT /product="putative DNA and/or RNA unwinding protein" FT /db_xref="GOA:D2TT52" FT /db_xref="InterPro:IPR002589" FT /db_xref="InterPro:IPR024900" FT /db_xref="UniProtKB/Swiss-Prot:D2TT52" FT /protein_id="CBG87876.1" FT /translation="MIKKVTQGEPMNSRIHVIHGDITTVAVDAIVNAANPSLMGGGGVD FT GAIHRAAGPELLEACMTVRRQQGECPPGHAVITAAGRLPAKAVIHTVGPIWRGGEHNEA FT QLLHDAYLNSLNLALANGYQSIAFPAISTGVYGYPRAAAAEIAVNTISEFITRRASPEQ FT IYFVCYDEETTRLYQRLLTQQGDQ" FT misc_feature 1203271..1203621 FT /locus_tag="ROD_11041" FT /note="HMMPfam hit to PF01661, Appr-1-p processing, score FT 5.9e-68" FT /inference="protein motif:PFAM:PF01661" FT CDS 1203746..1205167 FT /transl_table=11 FT /locus_tag="ROD_11051" FT /product="putative phospholipase" FT /db_xref="GOA:D2TT53" FT /db_xref="InterPro:IPR001736" FT /db_xref="UniProtKB/TrEMBL:D2TT53" FT /protein_id="CBG87877.1" FT /translation="MTRLARAITPLCERHPGECGLLVLDDSLDAFAARYRLVEMAERTL FT DIQYYIWEDDMSGRLLFSVLLAAAKRGVHVRLLLDDNNTPGLDDTLQLLDSHPNIEVRL FT FNPFSFRMLRALGYLTDFARLNRRMHNKSFTVDGVVTLVGGRNVGDAYFGAGQEPLFSD FT IDVMAIGPVVRDVADDFERYWRCRSVSTLKSVLSLSEEEIAFRIEQPESWYNDDITRRY FT LHTLETSQFISHLESASLPLIWAKTRLLSDDPSKGEGKAQRHSLLPQRLFDVMGSPGER FT IDIISAYFVPTRAGVAQLLQLVRKGVRIAILTNSLAANDVAVVHAGYARWRKKLLRYGV FT ELYELKPTREHETVVHDRGLTGNSGSSLHAKTFSIDGCKVFIGSLNFDPRSTLLNTEMG FT FVIESERLATLIHKRFTESQRNAAWQLRLDRWGRINWVDHQNDQPVVIKKEPATGFWKR FT VLVRLAKILPVEWLL" FT misc_feature 1204118..1204201 FT /locus_tag="ROD_11051" FT /note="HMMPfam hit to PF00614, Phospholipase FT D/Transphosphatidylase, score 0.12" FT /inference="protein motif:PFAM:PF00614" FT misc_feature 1204835..1204918 FT /locus_tag="ROD_11051" FT /note="HMMPfam hit to PF00614, Phospholipase FT D/Transphosphatidylase, score 0.033" FT /inference="protein motif:PFAM:PF00614" FT CDS complement(1205173..1206333) FT /transl_table=11 FT /gene="mdoC" FT /locus_tag="ROD_11061" FT /product="glucans biosynthesis acyltransferase" FT /EC_number="2.1.-.-" FT /note="unknown EC_number=2.1.-.-." FT /db_xref="GOA:D2TT54" FT /db_xref="InterPro:IPR002656" FT /db_xref="InterPro:IPR023723" FT /db_xref="UniProtKB/TrEMBL:D2TT54" FT /protein_id="CBG87878.1" FT /translation="MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHIWHVNSAGPS FT WWLTLFNDFIHAFRMQVFFVISGYFSYMLFLRYPLKRWWKVRVERVGIPMLTAIPLLTL FT PQFIMLQYVKGKADGWHALSLYDKYNTLAWELISHLWFLLVLVVLTSVSLVIFSLMRKK FT LTAGSARRLSTISMPELTLIFFLLGVMYAALRRTIFVIYPPILSDGMFNFIVMQTLFYM FT PFFILGALAFISPPLKALFTTPSRGCALGAAVAFVAYLLNQRYGSGDAWMYETEYVITM FT LMGLWMVNVVFSLGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHIASNLL FT GFLCGLVFVIGIALVLYEIHLRIPLLKFLFSGKPAIRQDKAPRLTH" FT misc_feature complement(1205233..1206309) FT /gene="mdoC" FT /locus_tag="ROD_11061" FT /note="HMMPfam hit to PF01757, Acyltransferase 3, score FT 9.7e-43" FT /inference="protein motif:PFAM:PF01757" FT misc_feature complement(join(1205263..1205331,1205341..1205409, FT 1205446..1205505,1205548..1205616,1205635..1205694, FT 1205752..1205820,1205857..1205925,1206004..1206072, FT 1206106..1206174,1206217..1206285)) FT /gene="mdoC" FT /locus_tag="ROD_11061" FT /note="10 probable transmembrane helices predicted for FT ROD11061 by TMHMM2.0 at aa 17-39, 54-76, 88-110, 137-159, FT 172-194, 214-233, 240-262, 277-296, 309-331 and 335-357" FT CDS 1206611..1208146 FT /transl_table=11 FT /gene="mdoG" FT /locus_tag="ROD_11081" FT /product="glucans biosynthesis protein G" FT /db_xref="GOA:D2TT55" FT /db_xref="InterPro:IPR007444" FT /db_xref="InterPro:IPR011013" FT /db_xref="InterPro:IPR014438" FT /db_xref="InterPro:IPR014756" FT /db_xref="InterPro:IPR023704" FT /db_xref="UniProtKB/TrEMBL:D2TT55" FT /protein_id="CBG87879.1" FT /translation="MMKMRWLGAAVMLALSTTSGWAFTINDVAKQAQSLAGKGYEAPKS FT NLPSVFREMKYADYQQIQFNREKAYWNNIKTPFKLEFYHQGMYFDTPVKINEVTATTVK FT RIKYSPDYFNFGNVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVLGAG FT QVYGLSARGLAIDTALPSGEEFPSFREFWIERPKPTDKRLTIYALLDSPRATGAYRFVI FT IPGRDTVVDVQSKVYLRDKVGKLGVAPLTSMFLFGPNQPSPTSNYRPELHDSNGLSIHA FT GNGEWIWRPLNNPKHLAVSSFAMENPQGFGLLQRGREFSRFEDLDDRYDLRPSAWITPK FT GEWGKGKIELVEIPTNDETNDNIVAYWTPDQLPEAGKEMNFKYTLTFSRDEDKLHAPDN FT AWVQQTRRSTGDVKQSNLIRQPDGTIAFIVDFAGSDMKKLPPETPVTAQASIGDNGEIV FT ENAVRYNPVTKGWRLTLRVKVKDAKKTTEMRAALVNADQTLSETWSYQLPANE" FT sig_peptide 1206611..1206676 FT /gene="mdoG" FT /locus_tag="ROD_11081" FT /note="Signal peptide predicted for ROD11081 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.989 between residues 22 and 23" FT misc_feature 1206677..1208137 FT /gene="mdoG" FT /locus_tag="ROD_11081" FT /note="HMMPfam hit to PF04349, Glucan biosynthesis, FT periplasmic, MdoG C-terminal, score 0" FT /inference="protein motif:PFAM:PF04349" FT CDS 1208139..1210667 FT /transl_table=11 FT /gene="mdoH" FT /locus_tag="ROD_11091" FT /product="glucans biosynthesis glucosyltransferase" FT /note="unknown EC_number=2.4.1.-." FT /db_xref="GOA:D2TT56" FT /db_xref="InterPro:IPR001173" FT /db_xref="InterPro:IPR023725" FT /db_xref="UniProtKB/TrEMBL:D2TT56" FT /protein_id="CBG87880.1" FT /translation="MNKTTEYIDAMPLSDIEKAALPKTDIRAVHEALDAGHRRYSREDD FT SPQGSVKARLQQAWPDSLAEGQLSKDDEGRDQLQAMPKAKRSSMFPDPWRTNPVGRFWD FT RLRGRDVTPRYLSRLTKEEQASEQKWRTVGTIRRYILLLLTLAQTVVATWYMKTILPYQ FT GWALINPVDMVGQDLWVSFMQLLPYVLQTGILILFAVLFCWVSAGFWTALMGFLQLLIG FT RDKYSISASTVGDEALNPEHRTALIMPICNEDVDRVFAGLRATWESVKATGNAAHFDVY FT ILSDSYNPDICVAEQKAWMELIAEVQGEGQIFYRRRRRRVKRKSGNIDDFCRRWGSQYS FT YMVVLDADSVMTGECLSGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFATRVYGPL FT FTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDFVEAALMRR FT AGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHPVHRAVFLTG FT VMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPELAIALFASTMV FT LLFLPKLLSILLIWCKGTKEYGGFIRVTLSLLLEVLFSVLLAPVRMLFHTVFVVSAFLG FT WEVVWNSPQRDDDSTPWGEAFMRHGSQLLLGLVWAVGMAWLDLRFLFWLAPIVFSLILS FT PFVSVISSRSTVGLRTKRWKLFLIPEEYSPPQVLVDTDRYLALNRSRSLADGFMHAVFN FT PSFNALATAMATARHRASQVLEIARDRHVEQALNETPEKLNRDRRLVLLSDPVTMARLH FT YRVWHSPERYSSWVNYYQDITLNPQALRKP" FT misc_feature join(1208553..1208606,1208700..1208768,1209672..1209740, FT 1209840..1209908,1209945..1210013,1210176..1210244) FT /gene="mdoH" FT /locus_tag="ROD_11091" FT /note="6 probable transmembrane helices predicted for FT ROD11091 by TMHMM2.0 at aa 139-156, 188-210, 512-534, FT 568-590, 603-625 and 680-702" FT misc_feature 1208871..1209428 FT /gene="mdoH" FT /locus_tag="ROD_11091" FT /note="HMMPfam hit to PF00535, Glycosyl transferase, family FT 2, score 1.1e-13" FT /inference="protein motif:PFAM:PF00535" FT misc_feature 1210554..1210619 FT /note="Predicted helix-turn-helix motif with score FT 1091.000, SD 2.90 at aa 806-827, sequence FT VTMARLHYRVWHSPERYSSWVN" FT CDS 1210769..1210996 FT /transl_table=11 FT /locus_tag="ROD_11101" FT /product="putative lipoprotein" FT /db_xref="InterPro:IPR010780" FT /db_xref="UniProtKB/TrEMBL:D2TT57" FT /protein_id="CBG87881.1" FT /translation="MRIIAAAMMVILLSGCGSIISRTVPGQGHGNQYYPGVQWDVRDSA FT WRYLTILDLPFSLVFDTLLLPIDLHHGPYE" FT sig_peptide 1210769..1210831 FT /locus_tag="ROD_11101" FT /note="Signal peptide predicted for ROD11101 by SignalP 2.0 FT HMM (Signal peptide probability 0.968) with cleavage site FT probability 0.483 between residues 21 and 22" FT misc_feature 1210772..1210978 FT /locus_tag="ROD_11101" FT /note="HMMPfam hit to PF07119, Protein of unknown function FT DUF1375, score 4.2e-36" FT /inference="protein motif:PFAM:PF07119" FT misc_feature 1210784..1210816 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1210997..1211371) FT /transl_table=11 FT /gene="msyB" FT /locus_tag="ROD_11111" FT /product="acidic protein" FT /db_xref="UniProtKB/TrEMBL:D2TT58" FT /protein_id="CBG87882.1" FT /translation="MTMYATLEEAIDAAREEFLADNPEVDQDEANVQQFNVQKYVMQDG FT DIMWQVEFFADEGEEGECLPLLSGEAAQSIFDGDYDEIEIRQEWQEENTLHEWDEGEFQ FT LEPPLDTEEGQTAADEWDER" FT CDS complement(1211453..1212733) FT /transl_table=11 FT /gene="mdtG" FT /locus_tag="ROD_11121" FT /product="multidrug resistance protein" FT /db_xref="GOA:D2TT59" FT /db_xref="InterPro:IPR001958" FT /db_xref="InterPro:IPR005828" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="InterPro:IPR023692" FT /db_xref="UniProtKB/TrEMBL:D2TT59" FT /protein_id="CBG87883.1" FT /translation="MCLIYIIFFLRRQRIILRSAMSTSEIPINWKRNLTVAWLGCFLTG FT AAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM FT LLRSALGMAIVMVLMGVAQNIWQLLVLRALLGLLGGFIPNANALIATQVPRNKSGWALG FT TLSTGGVSGALLGPLAGGLLADQYGLRPVFFITASVLLICFLLTLFFIRENFKPVSKKE FT MLHVREVVASLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMI FT ASVPGVAALLSAPRLGKLGDRIGPEKILIVALIVSVLLLIPMSFVQTPWQLAVLRFLLG FT AADGALLPAVQTLLVYNSTSQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFL FT VTAGVVLFNAFYSWNSLRRRVASRASG" FT misc_feature complement(join(1211492..1211560,1211669..1211737, FT 1211756..1211812,1211855..1211923,1211942..1212010, FT 1212101..1212169,1212188..1212256,1212344..1212412, FT 1212449..1212517,1212560..1212628)) FT /gene="mdtG" FT /locus_tag="ROD_11121" FT /note="10 probable transmembrane helices predicted for FT ROD11121 by TMHMM2.0 at aa 36-58, 73-95, 108-130, 160-182, FT 189-211, 242-264, 271-293, 308-326, 333-355 and 392-414" FT misc_feature complement(1211564..1212625) FT /gene="mdtG" FT /locus_tag="ROD_11121" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 1.1e-51" FT /inference="protein motif:PFAM:PF07690" FT sig_peptide complement(1212587..1212733) FT /gene="mdtG" FT /locus_tag="ROD_11121" FT /note="Signal peptide predicted for ROD11121 by SignalP 2.0 FT HMM (Signal peptide probability 0.783) with cleavage site FT probability 0.644 between residues 49 and 50" FT CDS complement(1212829..1213749) FT /transl_table=11 FT /gene="htrB" FT /locus_tag="ROD_11131" FT /product="lipid A biosynthesis lauroyl acyltransferase" FT /EC_number="2.3.1.-" FT /db_xref="GOA:D2TT60" FT /db_xref="InterPro:IPR004960" FT /db_xref="InterPro:IPR011920" FT /db_xref="UniProtKB/TrEMBL:D2TT60" FT /protein_id="CBG87884.1" FT /translation="MTNLPKFSAALLHPRYWLTWLGIGALWLVVQLPYPLIYRLGHLLG FT HLALRLMKQRAKVARRNLELCFPDMSEQERQALVVKNFESVGMGLMETGMAWFWPDRRI FT SRWTEVIGMEHIRDVQAQQRGILLVGLHFLTLELGARQFGLQEPGIGVYRPNDNPLLDW FT LQTWGRMRSNKSMLDRKDLKGMIKALKKGEVVWYAPDHDYGPRASVFVPLFAVEQAATT FT SGTWMLSKMSNACLVPFVPRRKPDGTGYQLIMLPPECSPPLENAEITAAWMNKIVEKCI FT MMAPEQYMWLHRRFKTRPEGVPSRY" FT misc_feature complement(1212859..1213740) FT /gene="htrB" FT /locus_tag="ROD_11131" FT /note="HMMPfam hit to PF03279, Bacterial lipid A FT biosynthesis acyltransferase, score 7.8e-160" FT /inference="protein motif:PFAM:PF03279" FT misc_feature complement(1213636..1213704) FT /gene="htrB" FT /locus_tag="ROD_11131" FT /note="1 probable transmembrane helix predicted for FT ROD11131 by TMHMM2.0 at aa 16-38" FT CDS 1213975..1215027 FT /transl_table=11 FT /locus_tag="ROD_11141" FT /product="rhodanase-like protein" FT /db_xref="InterPro:IPR001763" FT /db_xref="InterPro:IPR020936" FT /db_xref="UniProtKB/TrEMBL:D2TT61" FT /protein_id="CBG87885.1" FT /translation="MPVLHNRISNDLLKARMLAETEPRTTISFYKYFTIANPQAARDAL FT YQRFSALNVFGRVYLAQEGINAQISVPQSQLDNFRQQLYAFDPALDGLRLNIALDDDGK FT SFWVLRMKVRDRIVADGIDDPRFDASNVGDYLQAAEVNAMLDDPDAVFIDMRNHYEYEV FT GHFENALEIPADTFREQLPKAIEMMQEHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVW FT HIEGGIIEYARRAREQGLPVRFIGKNFVFDERMGERISEEVIAHCHQCGAPCDSHTNCK FT NDGCHLLFIQCPACAEKFTGCCSELCCEELELPEEEQRRRRAGRENGNKIFNKSRGRLN FT TVLGIPDPAE" FT misc_feature 1214266..1214289 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 1214383..1214676 FT /locus_tag="ROD_11141" FT /note="HMMPfam hit to PF00581, Rhodanese-like, score 5e-29" FT /inference="protein motif:PFAM:PF00581" FT CDS complement(1215114..1215689) FT /transl_table=11 FT /locus_tag="ROD_11151" FT /product="putative exported protein" FT /db_xref="GOA:D2TT62" FT /db_xref="InterPro:IPR007372" FT /db_xref="InterPro:IPR023480" FT /db_xref="UniProtKB/TrEMBL:D2TT62" FT /protein_id="CBG87886.1" FT /translation="MKKSLLGLTFASLLFTTGSALAADYKIDKEGQHAFINFRIQHLGY FT SWLYGTFKDFDGTFTFDEKNPAADKVNVTINTNSVDTNHAERDKHLRSADFLNVAKFPQ FT ATFTSTSVKKDGDELDITGNLTLNGVTKPVTLEAKMIGQGDDPWGSKRAGFEAEGKIKL FT KDFNITKDLGPVSQEVDLIISVEGVQQK" FT misc_feature complement(1215120..1215626) FT /locus_tag="ROD_11151" FT /note="HMMPfam hit to PF04264, FT Lipid/polyisoprenoid-binding, YceI-like, score 9.1e-86" FT /inference="protein motif:PFAM:PF04264" FT misc_feature complement(1215327..1215347) FT /note="PS00387 Inorganic pyrophosphatase signature." FT /inference="protein motif:Prosite:PS00387" FT sig_peptide complement(1215624..1215689) FT /locus_tag="ROD_11151" FT /note="Signal peptide predicted for ROD11151 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT CDS complement(1215686..1216258) FT /transl_table=11 FT /locus_tag="ROD_11161" FT /product="cytochrome b561 homolog" FT /db_xref="GOA:D2TT63" FT /db_xref="InterPro:IPR016174" FT /db_xref="UniProtKB/TrEMBL:D2TT63" FT /protein_id="CBG87887.1" FT /translation="MQFSNTPQRYGFFSIALHWLTALVVYGMFGLGLWMVSLSYYDGWY FT HQGPEIHKSIGILLMMGLVIRIVWRFLSPPPGPLQSYSPLIRTGASLAHMALYLLLFAI FT VISGYLISTADGKPISVFGWFDVPATFADAGAQADLAGSVHLWLAWTVVILSVLHGLMA FT FKHHFIDKDDTLKRMLGKSSSDYGAEK" FT misc_feature complement(1215716..1216240) FT /locus_tag="ROD_11161" FT /note="HMMPfam hit to PF01292, Cytochrome B561, bacterial, FT score 1.9e-70" FT /inference="protein motif:PFAM:PF01292" FT misc_feature complement(join(1215752..1215820,1215917..1215985, FT 1216043..1216096,1216154..1216222)) FT /locus_tag="ROD_11161" FT /note="4 probable transmembrane helices predicted for FT ROD11161 by TMHMM2.0 at aa 13-35, 55-72, 92-114 and FT 147-169" FT CDS complement(1216518..1216631) FT /transl_table=11 FT /locus_tag="ROD_11171" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR024494" FT /db_xref="UniProtKB/TrEMBL:D2TT64" FT /protein_id="CBG87888.1" FT /translation="MRRLFQFWVNNIRQHFMLYIFLWSLLAILDVIYIYFF" FT misc_feature complement(1216524..1216583) FT /locus_tag="ROD_11171" FT /note="1 probable transmembrane helix predicted for FT ROD11171 by TMHMM2.0 at aa 17-36" FT CDS complement(1216682..1217803) FT /transl_table=11 FT /gene="solA" FT /locus_tag="ROD_11181" FT /product="N-methyl-L-tryptophan oxidase" FT /EC_number="1.5.3.-" FT /db_xref="GOA:D2TT65" FT /db_xref="InterPro:IPR006076" FT /db_xref="InterPro:IPR023493" FT /db_xref="UniProtKB/TrEMBL:D2TT65" FT /protein_id="CBG87889.1" FT /translation="MTYDLLIAGSGSVGAAAGYYATRAGLKVLMIDAHLPPHQQGSHHG FT DTRLIRHAYGEGEKYVPLVLRAQTLWDELSADAEEPVFVRSGVINLGPAHSAFLANVAS FT SAKQWQLNVEQLDAAAIMARWPEIRVPDDYIGLFEADSGFLRSELAIKTWIRLAKEGGC FT AQLFNCPVTAIHHDEDGGVTVETADGEYRAKKALVSAGTWVQKLLPDLPVQPVRKVFAW FT YQADGRYSSKNNFPAFTGELLNGDQFYGFPAENDALKIGRHNGGQVIQHEEERKPFAAV FT ASDGAEAFPFLRNVLPGIGCCLYGATCTYDNSPDEDFIIDTLPGHDNTLVITGLSGHGF FT KFASVLGEIAADFAQNKPSGFDLTPFRLARFTA" FT misc_feature complement(1216745..1217794) FT /gene="solA" FT /locus_tag="ROD_11181" FT /note="HMMPfam hit to PF01266, FAD dependent FT oxidoreductase, score 8.2e-57" FT /inference="protein motif:PFAM:PF01266" FT CDS complement(1217918..1218175) FT /transl_table=11 FT /gene="bssS" FT /locus_tag="ROD_11191" FT /product="biofilm regulator" FT /db_xref="InterPro:IPR020273" FT /db_xref="UniProtKB/TrEMBL:D2TT66" FT /protein_id="CBG87890.1" FT /translation="MMEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNRSETDET FT EIGQTLWLTTDVARQFISILEAGIAKIESGDYQENEYRRH" FT CDS complement(1218306..1218473) FT /transl_table=11 FT /locus_tag="ROD_11201" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TT67" FT /protein_id="CBG87891.1" FT /translation="MFLPGRPGFFKLCRPAGSAPVNKSSNGYNFSYHQNNCITYLKLMN FT KLVINYPQNS" FT CDS complement(1218488..1218733) FT /transl_table=11 FT /gene="dinI" FT /locus_tag="ROD_11211" FT /product="damage-inducible protein" FT /db_xref="InterPro:IPR010391" FT /db_xref="UniProtKB/TrEMBL:D2TT68" FT /protein_id="CBG87892.1" FT /translation="MRIEVTIAKTSPLPAGAIDALAEELSRRITHHFPDNDGNVTVRYA FT AANNLSVIGATKEDKQRISEILQETWESADDWFITE" FT misc_feature complement(1218497..1218697) FT /gene="dinI" FT /locus_tag="ROD_11211" FT /note="HMMPfam hit to PF06183, DinI-like, score 5.6e-36" FT /inference="protein motif:PFAM:PF06183" FT CDS complement(1218809..1219855) FT /transl_table=11 FT /gene="pyrC" FT /locus_tag="ROD_11221" FT /product="dihydroorotase" FT /EC_number="3.5.2.3" FT /db_xref="GOA:D2TT69" FT /db_xref="InterPro:IPR002195" FT /db_xref="InterPro:IPR004721" FT /db_xref="InterPro:IPR006680" FT /db_xref="UniProtKB/TrEMBL:D2TT69" FT /protein_id="CBG87893.1" FT /translation="MTAPSQVLKIRRPDDWHLHLRDGDMLQTVVPYTSEIYARAIVMPN FT LAPPVTTVDAAIAYRQRILDAVPAGHTFTPLMTCYLTDTLNPDELERGFREGVFTAAKL FT YPANATTNSSHGVTSIDAIMPVLERMEKLGMPLLVHGEVTHAEIDIFDREARFIETVME FT PLRQRLPALKVVFEHITTKDAAEYVRDSNELLAATITPQHLMFNRNHMLVGGIRPHLYC FT LPILKRNVHQQALRELVASGFERAFLGTDSAPHARHRKESGCGCAGCFNAPTALASYAS FT VFEEMNALAHFEAFCSLNGPRFYGLPVNETFVELVREEQQVPESIRVADDTLVPFLGGE FT TLRWSVKA" FT misc_feature complement(1218812..1219843) FT /gene="pyrC" FT /locus_tag="ROD_11221" FT /note="HMMPfam hit to PF01979, Amidohydrolase 1, score FT 6.4e-33" FT /inference="protein motif:PFAM:PF01979" FT misc_feature complement(1219076..1219111) FT /note="PS00483 Dihydroorotase signature 2." FT /inference="protein motif:Prosite:PS00483" FT misc_feature complement(1219787..1219813) FT /note="PS00482 Dihydroorotase signature 1." FT /inference="protein motif:Prosite:PS00482" FT CDS complement(1219958..1220518) FT /transl_table=11 FT /locus_tag="ROD_11231" FT /product="putative lipoprotein" FT /db_xref="InterPro:IPR010835" FT /db_xref="UniProtKB/TrEMBL:D2TT70" FT /protein_id="CBG87894.1" FT /translation="MKKIFFAAALMVGGLLVGCNQLTQYTVSEQEINQALEKHNRFAKD FT IGLPGVADAHIVLNNLASQIGREEPNKVTLTGDASLDMNSLFGSQKATMKLKLKALPVF FT NKEKGAIFLQEMEVVDATVTPEKMQTVMQTLMPYLNQSLRNYFNQQPAYVLREDGSEGE FT AMAKKYAKGIEVKPGEIVIPFTD" FT misc_feature complement(1219961..1220518) FT /locus_tag="ROD_11231" FT /note="HMMPfam hit to PF07273, Protein of unknown function FT DUF1439, score 2.7e-126" FT /inference="protein motif:PFAM:PF07273" FT sig_peptide complement(1220447..1220518) FT /locus_tag="ROD_11231" FT /note="Signal peptide predicted for ROD11231 by SignalP 2.0 FT HMM (Signal peptide probability 0.972) with cleavage site FT probability 0.441 between residues 24 and 25" FT misc_feature complement(1220462..1220494) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1220646..1221293) FT /transl_table=11 FT /gene="grxB" FT /locus_tag="ROD_11241" FT /product="glutaredoxin 2" FT /db_xref="GOA:D2TT71" FT /db_xref="InterPro:IPR004045" FT /db_xref="InterPro:IPR007494" FT /db_xref="InterPro:IPR010987" FT /db_xref="InterPro:IPR011767" FT /db_xref="InterPro:IPR011901" FT /db_xref="InterPro:IPR012336" FT /db_xref="UniProtKB/TrEMBL:D2TT71" FT /protein_id="CBG87895.1" FT /translation="MKLYIYDHCPFCVKARMIFGLKNIPVELNVLANDDADTPTRMVGQ FT KMVPILQKDDSRYMAESMDIVHYVDKSDGKPLLTGKQNPAIAEWLRKVNGYANQLLLPR FT FAQSAFDEFSTPSARRYFIDKKEATIGSFADHLAHSAGLTKKISDDLRALDKLIVQPNA FT VNGELSEDDFQLFPLLRNLTLVSGVTWPTRVADYRDNMAKQTQVNLLSSMAI" FT misc_feature complement(1220649..1221044) FT /gene="grxB" FT /locus_tag="ROD_11241" FT /note="HMMPfam hit to PF04399, Glutaredoxin 2, C-terminal, FT score 1.9e-79" FT /inference="protein motif:PFAM:PF04399" FT misc_feature complement(1221186..1221293) FT /gene="grxB" FT /locus_tag="ROD_11241" FT /note="HMMPfam hit to PF00462, Glutaredoxin, score 1.2e-05" FT /inference="protein motif:PFAM:PF00462" FT misc_feature complement(1221240..1221287) FT /note="PS00195 Glutaredoxin active site." FT /inference="protein motif:Prosite:PS00195" FT CDS complement(join(1221360..1222022,1222024..1222566)) FT /pseudo FT /transl_table=11 FT /gene="mdtH" FT /locus_tag="ROD_11261" FT /product="multidrug resistance protein MdtH (pseudogene)" FT /note="pseudogene, truncated by frameshift mutation" FT misc_feature complement(join(1221492..1222022,1222024..1222524)) FT /gene="mdtH" FT /locus_tag="ROD_11261" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 4.3e-45" FT /inference="protein motif:PFAM:PF07690" FT CDS 1222828..1223412 FT /transl_table=11 FT /gene="rimJ" FT /locus_tag="ROD_11281" FT /product="ribosomal-protein-alanine acetyltransferase" FT /db_xref="GOA:D2TT72" FT /db_xref="InterPro:IPR000182" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:D2TT72" FT /protein_id="CBG87897.1" FT /translation="MFGYRSNVPKVRLTTDRLVVRLVHERDAWRLADYYAENRHFLKPW FT EPIRDESHCYPSGWQARLSMIAEFHKQGSAFYFALLDPDEKEIIGVANFSNVVRGSFHA FT CYLGYSIGQKWQGQGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLGFVK FT EGYAKDYLLIDGQWRDHVLTALTTTEWTPGR" FT misc_feature 1223065..1223313 FT /gene="rimJ" FT /locus_tag="ROD_11281" FT /note="HMMPfam hit to PF00583, GCN5-related FT N-acetyltransferase, score 2.5e-12" FT /inference="protein motif:PFAM:PF00583" FT CDS 1223423..1224079 FT /transl_table=11 FT /locus_tag="ROD_11291" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007432" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TTQ8" FT /protein_id="CBG87898.1" FT /translation="MKYELTATEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNRE FT PVMNLTEQEVQEQLDNLVKRHFLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVALIA FT TLLLRGAQTPGELRSRASRMHEFSDMAEVEATLERLATREDGPYVVRLAREPGKRESRY FT MHLFCGEVDEQALAVVASPTGGGDLQARVEALEAEVAELKQQIASLLAHPGESRE" FT misc_feature 1223435..1223947 FT /locus_tag="ROD_11291" FT /note="HMMPfam hit to PF04337, Protein of unknown function FT DUF480, score 1.5e-131" FT /inference="protein motif:PFAM:PF04337" FT misc_feature 1223504..1223536 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS join(1224072..1224746,1224745..1224990) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_11301" FT /product="putative oxidoreductase (pseudogene)" FT /note="pseudogene, truncated by frameshift mutation" FT misc_feature 1224081..1224434 FT /locus_tag="ROD_11301" FT /note="HMMPfam hit to PF01408, Oxidoreductase, N-terminal, FT score 1.4e-36" FT /inference="protein motif:PFAM:PF01408" FT misc_feature join(1224459..1224745,1224746..1224750) FT /locus_tag="ROD_11301" FT /note="HMMPfam hit to PF02894, Oxidoreductase, C-terminal, FT score 1.4e-07" FT /inference="protein motif:PFAM:PF02894" FT CDS 1225106..1226641 FT /transl_table=11 FT /gene="mviN" FT /locus_tag="ROD_11321" FT /product="putative outer membrane protein" FT /db_xref="InterPro:IPR004268" FT /db_xref="UniProtKB/TrEMBL:D2TTQ9" FT /protein_id="CBG87900.1" FT /translation="MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVAF FT KLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEEATRIFVSYVSGLLTLALAVVTVAGML FT AAPWVIMVTAPGFADTADKFALTTRLLQITFPYILLISLASLVGAILNTWNRFSIPAFA FT PTFLNISMIGFALFAAPYFNPPVLALAWAVTAGGVLQLVYQLPHLKKIGMLVLPRINFR FT DAGAMRVIKQMGPAILGVSVSQISLIINTIFASFLTSGSVSWMYYADRLMEFPSGVLGV FT ALGTILLPSLSKSFASGNHDEYCRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYG FT KFTAFDALMTQKALIAYSVGLMGLIVVKVLAPGFYSRQDIKTPVKIAIVTLIMTQLMNL FT AFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQRIFTPQPGWRAFFARLVIAVLVMSAV FT LVGMLHIMPAWSLGTMPWRLLRLMAVVLAGVAAYFAALAVLGFKVKEFTRRTV" FT sig_peptide 1225106..1225174 FT /gene="mviN" FT /locus_tag="ROD_11321" FT /note="Signal peptide predicted for ROD11321 by SignalP 2.0 FT HMM (Signal peptide probability 0.987) with cleavage site FT probability 0.688 between residues 23 and 24" FT misc_feature join(1225181..1225240,1225367..1225435,1225493..1225561, FT 1225580..1225648,1225661..1225714,1225814..1225882, FT 1225925..1225993,1226051..1226119,1226162..1226230, FT 1226249..1226317,1226327..1226386,1226435..1226503, FT 1226546..1226614) FT /gene="mviN" FT /locus_tag="ROD_11321" FT /note="13 probable transmembrane helices predicted for FT ROD11321 by TMHMM2.0 at aa 26-45, 88-110, 130-152, 159-181, FT 186-203, 237-259, 274-296, 316-338, 353-375, 382-404, FT 408-427, 444-466 and 481-503" FT misc_feature 1225187..1226551 FT /gene="mviN" FT /locus_tag="ROD_11321" FT /note="HMMPfam hit to PF03023, Virulence factor MVIN-like, FT score 2e-216" FT /inference="protein motif:PFAM:PF03023" FT misc_feature 1226330..1226362 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT repeat_region complement(1226813..1228107) FT /note="Insertion sequence ISCro4. No inverted or direct FT repeats apparent. 1 of 13 100% identical ISCro4 elements in FT CR chromosome" FT CDS complement(1226922..1227902) FT /transl_table=11 FT /locus_tag="ROD_11331" FT /product="ISCro4 transposase" FT /db_xref="GOA:D2TGM5" FT /db_xref="InterPro:IPR002525" FT /db_xref="InterPro:IPR003346" FT /db_xref="InterPro:IPR003583" FT /db_xref="UniProtKB/TrEMBL:D2TGM5" FT /protein_id="CBG87901.1" FT /translation="MEQELHFIGIDVSKAKLDVDVLRPDGRHRSKKFANTPKGHDELLR FT WLSGHRVAPAHICMEATSTYMEDVAAHLSDAGYTVSVINPALGKAFAQSEGLRSKTDAV FT DARMLAEFCRQKRPPAWEAPHPVERALRALVLRHQSLTDMHTQELNRLETAREVQRPSI FT DAHLLWLHAELKRIEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYTGLKERF FT THARQFAAFAGLTPRRYESGSSVNRASRMSKAGHASLRRALYMPAMVAVSKTEWGRAFR FT DRLAGNGKKGKVIIGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA" FT misc_feature complement(1227051..1227317) FT /locus_tag="ROD_11331" FT /note="HMMPfam hit to PF02371, Transposase, FT IS116/IS110/IS902, score 1.2e-27" FT /inference="protein motif:PFAM:PF02371" FT misc_feature complement(1227396..1227686) FT /locus_tag="ROD_11331" FT /note="HMMPfam hit to PF01548, Transposase, FT IS111A/IS1328/IS1533, score 1.2e-17" FT /inference="protein motif:PFAM:PF01548" FT CDS complement(join(1228182..1228448,1229890..1230042)) FT /pseudo FT /transl_table=11 FT /gene="flgN" FT /locus_tag="ROD_11371" FT /product="flagella synthesis protein FlgN (pseudogene)" FT /note="pseudogene, disrupted by ISCro3 insertion" FT misc_feature complement(join(1228182..1228448,1229890..1230042)) FT /gene="flgN" FT /locus_tag="ROD_11371" FT /note="HMMPfam hit to PF05130, FlgN, score 1.1e-56" FT /inference="protein motif:PFAM:PF05130" FT repeat_region complement(1228449..1228459) FT /note="11 bp direct repeat flanking ISCro3" FT repeat_region complement(1228460..1229889) FT /note="Insertion sequence ISCro3. 1 of 11 intact ISCro3 FT elements in CR chromosome, all have 18 bp inverted repeats FT containing 2 bp mismatches, and are flanked by direct FT repeats of varying length. This element has 11 bp direct FT repeats" FT repeat_region 1228460..1228477 FT /note="18 bp terminal inverted repeat of ISCro3, contains 2 FT mismatches" FT CDS complement(1228469..1229806) FT /transl_table=11 FT /locus_tag="ROD_11361" FT /product="ISCro3 transposase" FT /db_xref="GOA:D2THB0" FT /db_xref="InterPro:IPR002559" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR014736" FT /db_xref="InterPro:IPR024473" FT /db_xref="UniProtKB/TrEMBL:D2THB0" FT /protein_id="CBG87903.1" FT /translation="MPLLNDLLDFSDHPLMPPPSAQLFAQHLPVEWIQHCLTLSAHATV FT RRRRLPGDMVIWMVVAMAFFRNESITDVVRRLNLSADGEAGMNLLARSAVTQARQRVGA FT APVEWLFRQTAQTWGTERYQKDDWHGLQLFAIDGAQFRTPDEPELREHYGSANTSTERQ FT SAYPVMRLVALMNLGSHILLDAATAPYRRSETLLAHSMLVTIPDNSITLFDKLFYSADL FT LLSLNRQGCNRHWLLPAWKNIAAETEESYGPGDRLLKLKVSPQARKKNPSLPEYWYARA FT VTYELNGVEKTVLTSLQADRYKAREVAELYHSRWEIEVGFRNLKSSLLNNALVLRSRKV FT ELLEQEVWGMLLAYNLIRREATKATEKHKKAASEISFKFAFQFIATEMIVLGNTVSPGT FT IPKRLEHLRGALEAVFITKRPRPSRPRAVKISKTRYPVKRNAAPLK" FT misc_feature complement(1228739..1229410) FT /locus_tag="ROD_11361" FT /note="HMMPfam hit to PF01609, Transposase, IS4-like, score FT 3.6e-29" FT /inference="protein motif:PFAM:PF01609" FT repeat_region complement(1229872..1229889) FT /note="18 bp terminal inverted repeat of ISCro3, contains 2 FT mismatches" FT repeat_region complement(1229890..1229900) FT /note="11 bp direct repeat flanking ISCro3" FT CDS complement(1230047..1230340) FT /transl_table=11 FT /gene="flgM" FT /locus_tag="ROD_11381" FT /product="negative regulator of flagellin synthesis FT (anti-sigma factor)" FT /db_xref="GOA:D2TTR2" FT /db_xref="InterPro:IPR007412" FT /db_xref="UniProtKB/TrEMBL:D2TTR2" FT /protein_id="CBG87904.1" FT /translation="MSIDRTSPLKPVSTVQPRETSEAPVQKARQEKTSAATSTSVTLSD FT AQAKLMQPGAGDINMERVEALKTAIRNGELKMDAGKIADALIHEAQSYLQSK" FT misc_feature complement(1230068..1230313) FT /gene="flgM" FT /locus_tag="ROD_11381" FT /note="HMMPfam hit to PF04316, Anti-sigma-28 factor, FlgM, FT score 6.4e-27" FT /inference="protein motif:PFAM:PF04316" FT CDS complement(1230433..1231092) FT /transl_table=11 FT /gene="flgA" FT /locus_tag="ROD_11391" FT /product="flagellar basal body P-ring protein" FT /db_xref="GOA:D2TTR3" FT /db_xref="InterPro:IPR013974" FT /db_xref="InterPro:IPR017585" FT /db_xref="UniProtKB/TrEMBL:D2TTR3" FT /protein_id="CBG87905.1" FT /translation="MQTVKGGLVMLALLFSPLTLAQDLNAQLNDWFARRLAGFSDEVAV FT TIRTAPNLLPRCESPAFSVTGSAKLWGNVNVLARCANEKRYLQVNVQATGNYVVAAAPI FT TRGSKLTPASIALKRGRLDQLPPRTILDINQIQEAVSLRDLAPGQPVQLNMLRQDWRIK FT AGQRVLVVANGDGFSVNAEGQALNNAAVAQNARVRMLSGQVVSGIVDADGNILINL" FT misc_feature complement(1230622..1230810) FT /gene="flgA" FT /locus_tag="ROD_11391" FT /note="HMMPfam hit to PF08666, SAF domain, score 7.6e-14" FT /inference="protein motif:PFAM:PF08666" FT sig_peptide complement(1231030..1231092) FT /gene="flgA" FT /locus_tag="ROD_11391" FT /note="Signal peptide predicted for ROD11391 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 21 and 22" FT CDS 1231249..1231665 FT /transl_table=11 FT /gene="flgB" FT /locus_tag="ROD_11401" FT /product="flagellar basal-body rod protein FlgB" FT /db_xref="GOA:D2TTR4" FT /db_xref="InterPro:IPR001444" FT /db_xref="InterPro:IPR006300" FT /db_xref="InterPro:IPR019776" FT /db_xref="UniProtKB/TrEMBL:D2TTR4" FT /protein_id="CBG87906.1" FT /translation="MLDKLDAALRFQQEALNLRAQRQEILAANIANADTPGYQSRDIDF FT ASELKKVMVRGRQETGGISLALTSAQHIPAQAFSSPSTELLYRVPDQPSLDGNTVDMDR FT ERTQFADNSLKYQMSLTALGGQIKGMMNVLQGGN" FT misc_feature 1231273..1231365 FT /gene="flgB" FT /locus_tag="ROD_11401" FT /note="HMMPfam hit to PF00460, Flagellar basal body rod FT protein, score 2.2e-12" FT /inference="protein motif:PFAM:PF00460" FT misc_feature 1231291..1231353 FT /note="PS00588 Flagella basal body rod proteins signature." FT /inference="protein motif:Prosite:PS00588" FT CDS 1231669..1231884 FT /pseudo FT /transl_table=11 FT /gene="flgC" FT /locus_tag="ROD_11411" FT /product="flagellar basal-body rod protein FlgC (fragment)" FT /note="pseudogene, C-terminus missing, truncated by FT downstream deletion" FT misc_feature 1231687..1231782 FT /gene="flgC" FT /locus_tag="ROD_11411" FT /note="HMMPfam hit to PF00460, Flagellar basal body rod FT protein, score 1.9e-11" FT /inference="protein motif:PFAM:PF00460" FT CDS 1231885..1232013 FT /pseudo FT /transl_table=11 FT /gene="flgJ" FT /locus_tag="ROD_11412" FT /product="peptidoglycan hydrolase FlgJ (pseudogene)" FT /EC_number="3.2.1.-" FT /note="pseudogene, N-terminus missing, truncated by FT upstream deletion" FT misc_feature 1231885..1231959 FT /gene="flgJ" FT /locus_tag="ROD_11412" FT /note="HMMPfam hit to PF01832, Mannosyl-glycoprotein FT endo-beta-N-acetylglucosamidase, score 2.6e-09" FT /inference="protein motif:PFAM:PF01832" FT CDS 1232079..1233719 FT /transl_table=11 FT /gene="flgK" FT /locus_tag="ROD_11421" FT /product="flagellar hook-associated protein 1" FT /db_xref="GOA:D2TTR5" FT /db_xref="InterPro:IPR002371" FT /db_xref="InterPro:IPR010930" FT /db_xref="UniProtKB/TrEMBL:D2TTR5" FT /protein_id="CBG87909.1" FT /translation="MSSLFNNAMSGLNAAQAALVTASNNINSYNVAGYTRQTTIMAQAN FT STLGAGGWVGNGVYVSGVQREYDAFITNQLRGAQNQSSGLTTQYEQMSKIDNLLADKTL FT SVSASMQDFFTSLQTLISNAEDPAARQTLIGKANGLVNQFKTTDQYLRDQERQINTSIA FT SSVQQINNYSQQIANLNEQISRLTGVGAGAAPNDLLDQRDQLVSELNKIVGVEVSIQDG FT GTYNITMANGYSLVQGSNARQLAAVPSQADPSRTTVAYVDSQAGNIEIPEKLISTGSLG FT GLLTFRSHELDQTRNTLGQLALAFADAFNNQHNAGFDAEGNPGMDFFNIGGPTVLKNGK FT NTGTADVDATVTDAAKVQATDYKMVFDGSKWQITRLADNTSFEATETGGKLSFDGLEVT FT VGSGAAANDSFTLKPVSGAIINMGVNVTNESQIAMAEDPTAGESDNRNGQVLLDLQNNG FT TTVGGSKSFNDAYATLVSTVGSRTAALKTASKTQDNVVTQLTKEQQSISGVNLDEEYGN FT LQRYQQYYLANAQVLQTANSLFDALLGIR" FT misc_feature 1232091..1232183 FT /gene="flgK" FT /locus_tag="ROD_11421" FT /note="HMMPfam hit to PF00460, Flagellar basal body rod FT protein, score 5.9e-05" FT /inference="protein motif:PFAM:PF00460" FT misc_feature 1233597..1233713 FT /gene="flgK" FT /locus_tag="ROD_11421" FT /note="HMMPfam hit to PF06429, Protein of unknown function FT DUF1078, C-terminal, score 1.6e-15" FT /inference="protein motif:PFAM:PF06429" FT CDS 1233734..1234687 FT /transl_table=11 FT /gene="flgL" FT /locus_tag="ROD_11431" FT /product="flagellar hook-associated protein 3" FT /db_xref="GOA:D2TTR6" FT /db_xref="InterPro:IPR001029" FT /db_xref="InterPro:IPR013384" FT /db_xref="UniProtKB/TrEMBL:D2TTR6" FT /protein_id="CBG87910.1" FT /translation="MRISTQMMYQQNMRGITTSQAEWIRYGEQMSSGKRVVNPSDDPIA FT ASQAVVLSQAQAQNSQFALARTFATQKVSLEESVLSEVTTAIQAAQEKIVNAGNGTLSD FT DDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKTGEAPFAQADGTYSGGTESITQQ FT VDSARTMVIGHTGDKIFDSITSNAVPEPNGDDSETNLFRMLDSAIEALNSPVGDDDALK FT EQAKAVIDKTNRGLKNSLNNVLGVRAELGTQLSELSSLDSLGSDRALGQKQQMSDLVDV FT DWNEVISSYVMQQAALQASYKAFSDMQGMSLFQFNR" FT misc_feature 1233812..1234219 FT /gene="flgL" FT /locus_tag="ROD_11431" FT /note="HMMPfam hit to PF00669, Flagellin, N-terminal, score FT 1.5e-40" FT /inference="protein motif:PFAM:PF00669" FT CDS complement(1234772..1236004) FT /transl_table=11 FT /locus_tag="ROD_11441" FT /product="putative Major Facilitator Superfamily FT transporter" FT /db_xref="GOA:D2TTR7" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TTR7" FT /protein_id="CBG87911.1" FT /translation="MKNSLTPVTEENRMNTPSPWLIFVLALGAGFSVAAIYYAQPLLPL FT MGDDLHLNISGMGLVPTLTQAGYALGILFLLPLGDRYDRRTLIVLKSLALSLLLLACSL FT AGHLPSLLAVSLLLGMAATMAQDIVPAAAILAPEGRQGKTVGTVMTGLLLGILLSRTVS FT GLVGEAFGWRAMYQLAAVSIALIGLLLWKVLPPFTAHSALRYPVLMATMAQLWRRHPAL FT RRAALAQGFLSIAFSAFWSTLAVMLAEHYQMGSAAAGAFGIAGAAGALAAPMAGHLADR FT IGAEKVTQAGALLVTVSFALMFLLPFLPVQGQWMLIALSAVGFDLGLQSSLVAHQNLVY FT SLEPQARGRLNALLFTVVFIGMALGSVAGSQVYALANWQGVVALATVSGAIALVIRVSG FT KRQPEPRASEV" FT misc_feature complement(join(1234808..1234867,1234880..1234948, FT 1235006..1235065,1235075..1235134,1235168..1235236, FT 1235264..1235332,1235432..1235500,1235513..1235581, FT 1235600..1235668,1235681..1235749,1235768..1235836, FT 1235879..1235947)) FT /locus_tag="ROD_11441" FT /note="12 probable transmembrane helices predicted for FT ROD11441 by TMHMM2.0 at aa 20-42, 57-79, 86-108, 113-135, FT 142-164, 169-191, 225-247, 257-279, 291-310, 314-333, FT 353-375 and 380-399" FT misc_feature complement(1234883..1235932) FT /locus_tag="ROD_11441" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 8e-40" FT /inference="protein motif:PFAM:PF07690" FT misc_feature complement(1235699..1235731) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT sig_peptide complement(1235903..1236004) FT /locus_tag="ROD_11441" FT /note="Signal peptide predicted for ROD11441 by SignalP 2.0 FT HMM (Signal peptide probability 0.974) with cleavage site FT probability 0.656 between residues 34 and 35" FT CDS 1236061..1237011 FT /transl_table=11 FT /locus_tag="ROD_11451" FT /product="putative LysR-family transcriptional regulator" FT /db_xref="GOA:D2TTR8" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TTR8" FT /protein_id="CBG87912.1" FT /translation="MSRLKMIKNERIDRVELMRTFVRIVEAGSLSAAARQLNTTQATIS FT RRLQSLETMLGVKLVLRTTHAMKLTDDGERGYQHAKRIIDAWLALEDGLNVVEDDPVGT FT LRVRAPHAFGQQQLLSPLLSFLARYPNLSVEWMLNDKTVDFLRDNIDCAIRVGAEVDPA FT TVSVLLAEVPRSVVATPELLARHPRISSPEQLSTLPWIALNTFYQHSVSLSHRHSREAV FT SLPIAPRLSTDSIYVARNAALAGLGVAIVSSWTVAEDIAAGRLVELVADWQAAPLPVHL FT VYPWARYYPTRLRRFLELMKEVMPELAGMRRPAVE" FT misc_feature 1236103..1236282 FT /locus_tag="ROD_11451" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 5.9e-22" FT /inference="protein motif:PFAM:PF00126" FT misc_feature 1236142..1236207 FT /note="Predicted helix-turn-helix motif with score FT 2061.000, SD 6.21 at aa 28-49, sequence FT GSLSAAARQLNTTQATISRRLQ" FT misc_feature 1236145..1236237 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature 1236352..1236975 FT /locus_tag="ROD_11451" FT /note="HMMPfam hit to PF03466, LysR, substrate-binding, FT score 4e-40" FT /inference="protein motif:PFAM:PF03466" FT CDS complement(1237054..1240284) FT /transl_table=11 FT /gene="rne" FT /locus_tag="ROD_11461" FT /product="ribonuclease E" FT /EC_number="3.1.4.-" FT /db_xref="GOA:D2TTR9" FT /db_xref="InterPro:IPR003029" FT /db_xref="InterPro:IPR004659" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR016027" FT /db_xref="InterPro:IPR019307" FT /db_xref="InterPro:IPR021968" FT /db_xref="InterPro:IPR022967" FT /db_xref="UniProtKB/TrEMBL:D2TTR9" FT /protein_id="CBG87913.1" FT /translation="MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGK FT ITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPASYNAHGRPNIKDVLREGQEVIVQI FT DKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG FT MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYL FT RQDIGEILIDNPKVMEMARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQR FT EVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLG FT GLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGES FT SHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTA FT VNAIETRQNGVRCVIVPNDQMETPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEE FT YAERKRPEQPALATFAMPDVPPAPEPAEPVVKAAAPKAAAAPAAPAEPGLLSRLFGALK FT SLFSGGEEAKPAEQPAPKAAEKPERQQDRRKRQNNRRDRNDRNERSERRDSRDNRSERA FT ESGESRDENRRNRRQAQQSADRDNRQQTAEVAEKAKSGDEQQPQPRRERNRRRSEEKRQ FT AQQEVKALSIDEQQTQDTEQEERVRPAQPRRKQRQLAQKVRYTDNAADSEVVVAQVSEE FT KVATPVAEESAPVQSTELAKVPLPVVAEAPQEQEESSEARDSAGMPRRSRRSPRHLRVS FT GQRRRRYRDERYPLQSPMPLTVACASPEMASGKVWIRYPVARPQDAEQREQEIEQVQAQ FT PVAAEPQAVVAAVEVAETVVETVAQQAPVQPEETIETTHPEVIAAPVDEQPQVIAEADV FT PVAEEVAAEAQPVVAAEESAPVAEETAEVVTVEPEVAVEPVAVEPEVVAEPVKEQDVVE FT EVVAPAPVAAPVETVKVEKPVAVTPLAEHSHATAPMTRAPAPEYVPEAPRHSEWQRPAF FT VFEGKGAAGGHSATHHASAAPTRPQPVE" FT misc_feature complement(1237777..1237809) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(1239928..1240182) FT /gene="rne" FT /locus_tag="ROD_11461" FT /note="HMMPfam hit to PF00575, S1, RNA binding, score FT 6.1e-19" FT /inference="protein motif:PFAM:PF00575" FT misc_RNA complement(1240309..1240646) FT /note="Rfam:RF00040;rne5;Score=246.01;positions 1 to 58" FT CDS 1240858..1241811 FT /transl_table=11 FT /gene="rluC" FT /locus_tag="ROD_11481" FT /product="ribosomal large subunit pseudouridine synthase C" FT /EC_number="5.4.99.-" FT /db_xref="GOA:D2TTS0" FT /db_xref="InterPro:IPR002942" FT /db_xref="InterPro:IPR006145" FT /db_xref="InterPro:IPR006224" FT /db_xref="InterPro:IPR006225" FT /db_xref="InterPro:IPR020103" FT /db_xref="UniProtKB/TrEMBL:D2TTS0" FT /protein_id="CBG87914.1" FT /translation="MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKG FT EVRVNKKRIKPEYKLEAGDEIRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILV FT LNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSL FT HEQLREKGMQKDYLALVRGQWQSHVKNVQAPLLKNILQSGERIVRVSQEGKPSETRFKV FT EERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDKQLAATGLSRLFLH FT AAALKFTHPGTGEVLRIEAPMDGQLKHCLQVLRKPG" FT misc_feature 1240915..1241055 FT /gene="rluC" FT /locus_tag="ROD_11481" FT /note="HMMPfam hit to PF01479, RNA-binding S4, score FT 2.6e-11" FT /inference="protein motif:PFAM:PF01479" FT misc_feature 1241158..1241607 FT /gene="rluC" FT /locus_tag="ROD_11481" FT /note="HMMPfam hit to PF00849, Pseudouridine synthase, FT score 2.6e-60" FT /inference="protein motif:PFAM:PF00849" FT misc_feature 1241275..1241319 FT /note="PS01129 Rlu family of pseudouridine synthase FT signature." FT /inference="protein motif:Prosite:PS01129" FT CDS complement(1241853..1242437) FT /transl_table=11 FT /locus_tag="ROD_11491" FT /product="Maf-like protein" FT /db_xref="GOA:D2TTS1" FT /db_xref="InterPro:IPR003697" FT /db_xref="UniProtKB/TrEMBL:D2TTS1" FT /protein_id="CBG87915.1" FT /translation="MPNLILASTSPWRRALLEKLALPFECAAPEVDETPLPGETPRHLV FT SRLAKEKAQSLARRFPAHLIIGSDQVCVLEGEITGKPLTEEKACQQLAKASGNIITFYT FT GLALYNSATGHLQSDVEPFDVHFRHLSATEIADYVRKERPLQCAGSFKSEGLGIALFER FT LAGRDPNTLVGLPLIALCQMLRQEGINPLKA" FT misc_feature complement(1241862..1242434) FT /locus_tag="ROD_11491" FT /note="HMMPfam hit to PF02545, Maf-like protein, score FT 2.1e-83" FT /inference="protein motif:PFAM:PF02545" FT misc_RNA 1242431..1242598 FT /note="Rfam:RF00077;SraB;Score=135.76;positions 1 to 60" FT CDS 1242635..1243156 FT /transl_table=11 FT /locus_tag="ROD_11501" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR003772" FT /db_xref="UniProtKB/TrEMBL:D2TTS2" FT /protein_id="CBG87916.1" FT /translation="MQKVKLPLTLDPVRTAQKRLDYEGIFPSDLVERVADSVVSVDSDV FT ECSMSFAIDNQRLAVINGDAAVSVTLECQRCGQPFTHQVHTTYCFSPVRSDEQAEALPE FT AYEPIEVNEFGEIDLLAMVEDEIILSLPVVPVHDSEHCEVSEADMVFGELPDEAQKPNP FT FAVLASLKRK" FT misc_feature 1242677..1243150 FT /locus_tag="ROD_11501" FT /note="HMMPfam hit to PF02620, Protein of unknown function FT DUF177, score 3.7e-55" FT /inference="protein motif:PFAM:PF02620" FT CDS 1243173..1243346 FT /transl_table=11 FT /gene="rpmF" FT /locus_tag="ROD_11511" FT /product="50S ribosomal protein L32" FT /db_xref="GOA:D2TTS3" FT /db_xref="InterPro:IPR002677" FT /db_xref="InterPro:IPR011332" FT /db_xref="UniProtKB/TrEMBL:D2TTS3" FT /protein_id="CBG87917.1" FT /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITA FT DGYYRGRKVIAK" FT misc_feature 1243176..1243343 FT /gene="rpmF" FT /locus_tag="ROD_11511" FT /note="HMMPfam hit to PF01783, Ribosomal protein L32p, FT score 2.3e-20" FT /inference="protein motif:PFAM:PF01783" FT CDS 1243427..1244503 FT /transl_table=11 FT /gene="plsX" FT /locus_tag="ROD_11521" FT /product="fatty acid/phospholipid synthesis protein" FT /db_xref="GOA:D2TTS4" FT /db_xref="InterPro:IPR003664" FT /db_xref="InterPro:IPR012281" FT /db_xref="UniProtKB/TrEMBL:D2TTS4" FT /protein_id="CBG87918.1" FT /translation="MTRLTLALDVMGGDFGPSVTVPAALQALNSNSQLTLLLVGDPDTI FT TPLLAKADFEQRSRLQIIPAQSVIASDARPSQAIRASRGSSMRVALELVKEGRAQACVS FT AGNTGALMGLAKLLLKPLDGIERPALVTVLPHQQKGKTVVLDLGANVDCDSMMLTQFAI FT MGSVLAEEVVGINHPRVALLNIGEEETKGLDSIRDASALLKTIPSINYIGYLEANELLT FT GKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLILKRWLQKSLARRF FT SHLNPDQYNGACLLGLRGTVIKSHGAANQRAFTVAIEQAVQAVQRQVPQRIAARLESVY FT PAGFELQDADNGDTPQPR" FT misc_feature 1243436..1244419 FT /gene="plsX" FT /locus_tag="ROD_11521" FT /note="HMMPfam hit to PF02504, Fatty acid synthesis plsX FT protein, score 1.6e-185" FT /inference="protein motif:PFAM:PF02504" FT CDS 1244581..1245534 FT /transl_table=11 FT /gene="fabH" FT /locus_tag="ROD_11531" FT /product="3-oxoacyl-[acyl-carrier-protein] synthase III" FT /EC_number="2.3.1.41" FT /db_xref="GOA:D2TTS5" FT /db_xref="InterPro:IPR004655" FT /db_xref="InterPro:IPR013747" FT /db_xref="InterPro:IPR013751" FT /db_xref="InterPro:IPR016038" FT /db_xref="InterPro:IPR016039" FT /db_xref="UniProtKB/TrEMBL:D2TTS5" FT /protein_id="CBG87919.1" FT /translation="MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIA FT APEETVSTMGYTAAQRALEMAGIDKDQIGLIVVATTSATHAFPSAACQIQGMLGIKGCP FT AFDVAAACAGFTYALSVADMYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGA FT VVLGASEEEGIISTHLHADGSYGPLLTLPNADRVNPDNPIYLTMAGNDVFKVAVTELAH FT IVDETLAANNYDRSQLDWLVPHQANLRIISATAKKLGMSMDKVVVTLDRHGNTSAASVP FT CALDEAVRDGRIKAGHLVLLEAFGGGFTWGSALVRF" FT misc_feature 1244896..1245129 FT /gene="fabH" FT /locus_tag="ROD_11531" FT /note="HMMPfam hit to PF08545, FT 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, score FT 7.9e-43" FT /inference="protein motif:PFAM:PF08545" FT misc_feature 1245262..1245531 FT /gene="fabH" FT /locus_tag="ROD_11531" FT /note="HMMPfam hit to PF08541, FT 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FT C-terminal, score 7.6e-54" FT /inference="protein motif:PFAM:PF08541" FT CDS 1245550..1246479 FT /transl_table=11 FT /gene="fabD" FT /locus_tag="ROD_11541" FT /product="malonyl CoA-acyl carrier protein transacylase" FT /EC_number="2.3.1.39" FT /db_xref="GOA:D2TTS6" FT /db_xref="InterPro:IPR001227" FT /db_xref="InterPro:IPR004410" FT /db_xref="InterPro:IPR014043" FT /db_xref="InterPro:IPR016035" FT /db_xref="InterPro:IPR016036" FT /db_xref="InterPro:IPR024925" FT /db_xref="UniProtKB/TrEMBL:D2TTS6" FT /protein_id="CBG87920.1" FT /translation="MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLW FT ALTQQGPAEELNKTWQTQPALLAASVALYRVWQQQGGEAPTLMAGHSLGEYSALVCAGV FT INFADAVRLVELRGKFMQEAVPEGTGAMAAIIGLDDASIAQACEASAEGQVVSPVNFNS FT PGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAAEKLAAELAKITFN FT APTVPVVNNVDVKCETDADAIRDALVRQLYSPVQWTRSVEFMAAQGVEHLYEVGPGKVL FT TGLTKRIVDTLTASALNEPAAVSAALEQ" FT misc_feature 1245730..1246230 FT /gene="fabD" FT /locus_tag="ROD_11541" FT /note="HMMPfam hit to PF00698, Acyl transferase, score FT 1.6e-23" FT /inference="protein motif:PFAM:PF00698" FT misc_feature 1245796..1245828 FT /note="PS00435 Peroxidases proximal heme-ligand signature." FT /inference="protein motif:Prosite:PS00435" FT CDS 1246492..1247226 FT /transl_table=11 FT /gene="fabG" FT /locus_tag="ROD_11551" FT /product="3-oxoacyl-[acyl-carrier protein] reductase" FT /EC_number="1.1.1.100" FT /db_xref="GOA:D2TTS7" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR002347" FT /db_xref="InterPro:IPR011284" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR020904" FT /db_xref="UniProtKB/TrEMBL:D2TTS7" FT /protein_id="CBG87921.1" FT /translation="MSFEGKIALVTGASRGIGRAIAETLVARGATVIGTATSENGAQAI FT SDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDDEWN FT DILETNLSSVFRLSKAVMRAMMKKRHGRIITVGSVVGTMGNAGQTNYAAAKAGLIGFSK FT SLAREVASRGITVNVVAPGFIETDMTRALTDEQRAGTLAAVPAGRLGSPKEIASAVAFL FT ASDEAGYITGETLHVNGGMYMV" FT misc_feature 1246507..1247001 FT /gene="fabG" FT /locus_tag="ROD_11551" FT /note="HMMPfam hit to PF00106, Short-chain FT dehydrogenase/reductase SDR, score 6.2e-43" FT /inference="protein motif:PFAM:PF00106" FT misc_feature 1246903..1246989 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT /inference="protein motif:Prosite:PS00061" FT CDS 1247503..1247739 FT /transl_table=11 FT /gene="acpP" FT /locus_tag="ROD_11561" FT /product="acyl carrier protein" FT /db_xref="GOA:D2TTS8" FT /db_xref="InterPro:IPR003231" FT /db_xref="InterPro:IPR006162" FT /db_xref="InterPro:IPR006163" FT /db_xref="InterPro:IPR009081" FT /db_xref="UniProtKB/TrEMBL:D2TTS8" FT /protein_id="CBG87922.1" FT /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVM FT ALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA" FT misc_feature 1247518..1247721 FT /gene="acpP" FT /locus_tag="ROD_11561" FT /note="HMMPfam hit to PF00550, Phosphopantetheine-binding, FT score 4.3e-24" FT /inference="protein motif:PFAM:PF00550" FT misc_feature 1247596..1247643 FT /note="PS00012 Phosphopantetheine attachment site." FT /inference="protein motif:Prosite:PS00012" FT misc_feature 1247683..1247730 FT /note="PS00038 Myc-type, 'helix-loop-helix' dimerization FT domain signature." FT /inference="protein motif:Prosite:PS00038" FT CDS 1247862..1249067 FT /transl_table=11 FT /gene="fabF" FT /locus_tag="ROD_11571" FT /product="3-oxoacyl-[acyl-carrier-protein] synthase 2" FT /EC_number="2.3.1.41" FT /db_xref="GOA:D2TTS9" FT /db_xref="InterPro:IPR000794" FT /db_xref="InterPro:IPR014030" FT /db_xref="InterPro:IPR014031" FT /db_xref="InterPro:IPR016038" FT /db_xref="InterPro:IPR016039" FT /db_xref="InterPro:IPR017568" FT /db_xref="InterPro:IPR018201" FT /db_xref="UniProtKB/TrEMBL:D2TTS9" FT /protein_id="CBG87923.1" FT /translation="MLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDF FT NCDDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEVTEENATRIGAAIGSGIGGLGLIE FT ENHSSLVNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAA FT RIIAYGDADAMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGD FT GAGMVVLEEYEHAKKRGAKIYAEVVGFGMSSDAYHMTSPPENGAGAALAMVNALRDAAI FT EPGKIGYVNAHGTSTPAGDKAEAQAVKSVFGDAASRVMVSSTKSMTGHLLGAAGAVESI FT YSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYALCNSFGFGGTNGSLIFK FT KI" FT misc_feature 1247871..1248566 FT /gene="fabF" FT /locus_tag="ROD_11571" FT /note="HMMPfam hit to PF00109, Beta-ketoacyl synthase, FT N-terminal, score 1.6e-75" FT /inference="protein motif:PFAM:PF00109" FT misc_feature 1248288..1248338 FT /note="PS00606 Beta-ketoacyl synthases active site." FT /inference="protein motif:Prosite:PS00606" FT misc_feature 1248588..1248935 FT /gene="fabF" FT /locus_tag="ROD_11571" FT /note="HMMPfam hit to PF02801, Beta-ketoacyl synthase, FT C-terminal, score 4.6e-57" FT /inference="protein motif:PFAM:PF02801" FT CDS 1249186..1249995 FT /transl_table=11 FT /gene="pabC" FT /locus_tag="ROD_11581" FT /product="4-amino-4-deoxychorismate lyase" FT /EC_number="4.1.3.38" FT /db_xref="GOA:D2TTT0" FT /db_xref="InterPro:IPR001544" FT /db_xref="InterPro:IPR017824" FT /db_xref="InterPro:IPR018300" FT /db_xref="UniProtKB/TrEMBL:D2TTT0" FT /protein_id="CBG87924.1" FT /translation="MFLINGREQASLAASDRAIQFGDGCFTTARIIDGKVCQLAAHLRR FT LQEACEKLLIAFADLDELEREMSTLSAGHLRGVLKVIISRGSCGRGYSAAQCRQPTRIL FT SVSPWPSHYDRWREQGITLTLSPVRLGRNPMLAGIKHLNRLEQVLIRSHLEQTEADEAL FT VLDSEGWVTECCAANLFWRKDNVVYTPCLDQAGVNGIMRQFCMRQLAQSSFRLVETRAR FT EEELQHADEMVVCNALMPVVPVRAWGTKRFSSRALYEFLAPLCEHPN" FT misc_feature 1249186..1249971 FT /gene="pabC" FT /locus_tag="ROD_11581" FT /note="HMMPfam hit to PF01063, Aminotransferase, class IV, FT score 4.8e-57" FT /inference="protein motif:PFAM:PF01063" FT misc_feature 1249702..1249791 FT /note="PS00770 Aminotransferases class-IV signature." FT /inference="protein motif:Prosite:PS00770" FT CDS 1249998..1251020 FT /transl_table=11 FT /locus_tag="ROD_11591" FT /product="putative aminodeoxychorismate lyase" FT /db_xref="GOA:D2TTT1" FT /db_xref="InterPro:IPR003770" FT /db_xref="UniProtKB/TrEMBL:D2TTT1" FT /protein_id="CBG87925.1" FT /translation="MKKLLSVVLLLVVVLGVAAGVGVWKVRQLADSKILIKDEIVFTLK FT PGTGRLALGDQLYAEGVINRPRVFQWLLRVEPELAHFKAGTYRFTPGMRVREMLQLLES FT GKEAQFPLRLVEGLRLSDYLRQLREAPYIRHTLSDDSYESVATALGMNGTDRLEGWFWP FT DTWMYTANTTDVALLRRAHQKMVKMVDSVWEGRAKGLPYQDQNQLVTMASIIEKETAVA FT SERDRVASVFINRLRVGMRLQTDPTVIYGMGERYNGRISRADLETPTAYNTYTITGLPP FT GPIAMPGEASLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNRSVQEYLKVLKEKNAQ FT " FT sig_peptide 1249998..1250054 FT /locus_tag="ROD_11591" FT /note="Signal peptide predicted for ROD11591 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.695 between residues 19 and 20" FT misc_feature 1250010..1250069 FT /locus_tag="ROD_11591" FT /note="1 probable transmembrane helix predicted for FT ROD11591 by TMHMM2.0 at aa 5-24" FT misc_feature 1250115..1250996 FT /locus_tag="ROD_11591" FT /note="HMMPfam hit to PF02618, Aminodeoxychorismate lyase, FT score 2e-151" FT /inference="protein motif:PFAM:PF02618" FT CDS 1251010..1251651 FT /transl_table=11 FT /gene="tmk" FT /locus_tag="ROD_11601" FT /product="Thymidylate kinase" FT /EC_number="2.7.4.9" FT /db_xref="GOA:D2TTT2" FT /db_xref="InterPro:IPR018094" FT /db_xref="InterPro:IPR018095" FT /db_xref="UniProtKB/TrEMBL:D2TTT2" FT /protein_id="CBG87926.1" FT /translation="MRSKYIVIEGLEGAGKTTARNVVVETLQQLGIRDMVFTREPGGTQ FT LAEKLRSLVLDIKSVGDEIICDKAEVLMFYAARVQLVETVIRPALANGAWVIGDRHDLS FT TQAYQGGGRGIDRHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQES FT FDFFNRTRARYLELAAQDPGIRTIDATQPLDAVMHSIRTVVSEWVKEQGA" FT misc_feature 1251031..1251609 FT /gene="tmk" FT /locus_tag="ROD_11601" FT /note="HMMPfam hit to PF02223, Thymidylate kinase, score FT 2.2e-82" FT /inference="protein motif:PFAM:PF02223" FT misc_feature 1251037..1251060 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 1251298..1251336 FT /note="PS01331 Thymidylate kinase signature." FT /inference="protein motif:Prosite:PS01331" FT CDS 1251648..1252652 FT /transl_table=11 FT /gene="holB" FT /locus_tag="ROD_11611" FT /product="DNA polymerase III, delta subunit" FT /db_xref="GOA:D2TTT3" FT /db_xref="InterPro:IPR004622" FT /db_xref="InterPro:IPR008921" FT /db_xref="InterPro:IPR015199" FT /db_xref="UniProtKB/TrEMBL:D2TTT3" FT /protein_id="CBG87927.1" FT /translation="MKWYPWLRPDFEKLVASYQGGRGHHALLIQALPGMGDDALIYALS FT RYLLCQQPEGHKSCGHCRGCQLMQAGTHPDYYALLPEKGKSALGIDAVREVGEKLYERA FT RLGGAKVVWIPDAALLTDAAANALLKTLEEPPEHTWFFLASREPARLLATLRSRCRLHH FT LAPPPEQYAVAWLVREVTMSQEAIITALRLSAGSPGAAYELLQAESWAHRDALLQALTA FT SVSNGDWYTLLSALNHEQAPERLHWLAMLLMDALKRQHGASSLTNVDAEPLAVALAANY FT SASRIQAILNAVCHSREQLLNVSGLNRELVLTDLLLRIEHYLQPGAVLPVPHL" FT misc_feature 1252275..1252616 FT /gene="holB" FT /locus_tag="ROD_11611" FT /note="HMMPfam hit to PF09115, DNA polymerase III, delta FT subunit, C-terminal, score 3.3e-42" FT /inference="protein motif:PFAM:PF09115" FT CDS 1252663..1253460 FT /transl_table=11 FT /locus_tag="ROD_11621" FT /product="putative deoxyribonuclease" FT /db_xref="GOA:D2TTT4" FT /db_xref="InterPro:IPR001130" FT /db_xref="InterPro:IPR012278" FT /db_xref="InterPro:IPR015991" FT /db_xref="InterPro:IPR018228" FT /db_xref="UniProtKB/TrEMBL:D2TTT4" FT /protein_id="CBG87928.1" FT /translation="MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLP FT GYRSMREQVGERDNVVFSCGVHPLNQDEDYAVEDLRRLAGEEGVVAMGETGLDYFYTPE FT TKLRQQASFINHIQIGRELNKPVIVHTRDARADTLAILRNEKVTDCGGVLHCFTEDRET FT AGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPA FT MVRDVAEYMAVLKGVAVDELAQVTTNNFASLFHIDASRLQSAS" FT misc_feature 1252663..1253427 FT /locus_tag="ROD_11621" FT /note="HMMPfam hit to PF01026, Deoxyribonuclease, FT TatD-related, score 2.1e-117" FT /inference="protein motif:PFAM:PF01026" FT misc_feature 1252669..1252695 FT /note="PS01137 Uncharacterized protein family UPF0006 FT signature 1." FT /inference="protein motif:Prosite:PS01137" FT misc_feature 1253233..1253283 FT /note="PS01091 Uncharacterized protein family UPF0006 FT signature 3." FT /inference="protein motif:Prosite:PS01091" FT CDS 1253753..1255186 FT /transl_table=11 FT /gene="ptsG" FT /locus_tag="ROD_11631" FT /product="glucose-specific PTS system IIBC component" FT /EC_number="2.7.1.69" FT /db_xref="GOA:D2TTT5" FT /db_xref="InterPro:IPR001996" FT /db_xref="InterPro:IPR003352" FT /db_xref="InterPro:IPR004719" FT /db_xref="InterPro:IPR011299" FT /db_xref="InterPro:IPR011535" FT /db_xref="InterPro:IPR013013" FT /db_xref="InterPro:IPR018113" FT /db_xref="UniProtKB/TrEMBL:D2TTT5" FT /protein_id="CBG87929.1" FT /translation="MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVVS FT HVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALASVVAYGIMVKTMSVVAPLVLHLP FT AEEIAAKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLAAIF FT TGVILSFIWPPIGTAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPFQMQI FT GEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVG FT GIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHG FT LIDFIVLSGNSSKLWLFPIVGIGYAIVYYTVFRVLIKALDLKTPGREDNTDEAKAGATS FT EMAPALVAAFGGKENITNLDACITRLRVSVADVAKVDQAGLKNLGAAGVVVAGSGVQAI FT FGTKSDNLKTEMDEYIRNS" FT misc_feature 1253789..1254712 FT /gene="ptsG" FT /locus_tag="ROD_11631" FT /note="HMMPfam hit to PF02378, Phosphotransferase system, FT EIIC, score 1.2e-108" FT /inference="protein motif:PFAM:PF02378" FT misc_feature join(1253813..1253881,1253909..1253968,1253987..1254055, FT 1254098..1254157,1254215..1254283,1254326..1254394, FT 1254500..1254568,1254596..1254664,1254677..1254745, FT 1254812..1254880) FT /gene="ptsG" FT /locus_tag="ROD_11631" FT /note="10 probable transmembrane helices predicted for FT ROD11631 by TMHMM2.0 at aa 21-43, 53-72, 79-101, 116-135, FT 155-177, 192-214, 250-272, 282-304, 309-331 and 354-376" FT misc_feature 1254956..1255060 FT /gene="ptsG" FT /locus_tag="ROD_11631" FT /note="HMMPfam hit to PF00367, Phosphotransferase system, FT EIIB, score 2.7e-18" FT /inference="protein motif:PFAM:PF00367" FT misc_feature 1254992..1255045 FT /note="PS01035 PTS EIIB domains cysteine phosphorylation FT site signature." FT /inference="protein motif:Prosite:PS01035" FT CDS complement(1255266..1257563) FT /transl_table=11 FT /gene="fhuE" FT /locus_tag="ROD_11641" FT /product="TonB-dependent receptor for Fe(III)-coprogen FT Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid" FT /db_xref="GOA:D2TTT6" FT /db_xref="InterPro:IPR000531" FT /db_xref="InterPro:IPR010105" FT /db_xref="InterPro:IPR010917" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:D2TTT6" FT /protein_id="CBG87930.1" FT /translation="MNAYISHLYFHAHFLAKKIKTVCAVPRHEQISFFLKGLSMSFTTL FT HGDKLRQPTLLAACIAIALTPSISFAASAPEETVIVEGSASAGYSADEQDYSVKTTSAG FT TKMMMTQRDIPQSVSIVGQQRMEDQQLQTLGEVMDNTLGISRSQADSDRSSYYSRGFEI FT DNYMVDGIPTWFESRWNLGDALSDTALFERVEVVRGASGLMTGTGNPSASINMIRKHAT FT SREFKGDVSAEYGSWNKQRYVMDMQSPLTDDGNVRARIVAGYQNNDSWLDRYNSEKTFF FT SGIIDADLGETTSLAAGYEYQKIDVNSPTWGGLPRWNTEGSKNSYDRARSTAPDWAYND FT KEINKVFLTLRQRFADSWQATMNATHSEVEFDSKTMYIDALVNKETGELVGPYANYGPG FT FDYVGGTGWNSGKRKVDAVDLFADGGYDLFGRQHNLMFGGSYSKQNNRYFSSWANVFPD FT EIGSFANDNGNFPQTHWAPQSLAQDDTTHMKSLYAATRISLADPLHLILGARYTNWRVD FT TLTYSMEQNHTTPYAGLVYDINDNWSTYASYTSIFQPQNKRDSSGKYLSPIIGNNYEVG FT LKSDWLNSRLTTTLSVFRIEQDNVGQSTGVPIAGSNGDTAYKAVDGTVSKGVELEINGA FT ITDNWQMTFGATRYVANDNEGNAVNPYLPRTSVKLFTRYRLPDMPELTVGGGVNWQNRV FT YSDTVTPYGTFRAEQGSYALVDLFTRYQVSKNFSLQGNVNNLFNKTYDTNVEGSIVYGE FT PRNVSITATWQF" FT misc_feature complement(1255269..1255979) FT /gene="fhuE" FT /locus_tag="ROD_11641" FT /note="HMMPfam hit to PF00593, TonB-dependent receptor, FT beta-barrel, score 2.4e-27" FT /inference="protein motif:PFAM:PF00593" FT misc_feature complement(1255269..1255322) FT /note="PS01156 TonB-dependent receptor proteins signature FT 2." FT /inference="protein motif:Prosite:PS01156" FT misc_feature complement(1256925..1257236) FT /gene="fhuE" FT /locus_tag="ROD_11641" FT /note="HMMPfam hit to PF07715, TonB-dependent receptor, FT plug, score 1.1e-18" FT /inference="protein motif:PFAM:PF07715" FT misc_feature complement(1257312..1257563) FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT /inference="protein motif:Prosite:PS00430" FT CDS 1257793..1258152 FT /transl_table=11 FT /locus_tag="ROD_11651" FT /product="putative nucleotide-binding protein" FT /db_xref="GOA:D2TTT7" FT /db_xref="InterPro:IPR001310" FT /db_xref="InterPro:IPR011146" FT /db_xref="InterPro:IPR011151" FT /db_xref="InterPro:IPR019808" FT /db_xref="UniProtKB/TrEMBL:D2TTT7" FT /protein_id="CBG87931.1" FT /translation="MAEETIFSKIVRREIPSDIVYQDELVTAFRDISPQAPTHILIIPN FT VLIPTVNDVTAEHEQALGRMITVAAKIAAQEGIAEDGYRLIMNTNRHGGQEVYHIHMHL FT LGGRALGPMLAHKGL" FT misc_feature 1257826..1258122 FT /locus_tag="ROD_11651" FT /note="HMMPfam hit to PF01230, Histidine triad (HIT) FT protein, score 2.9e-47" FT /inference="protein motif:PFAM:PF01230" FT misc_feature 1258054..1258110 FT /note="PS00892 HIT family signature." FT /inference="protein motif:Prosite:PS00892" FT CDS 1258155..1258529 FT /transl_table=11 FT /locus_tag="ROD_11661" FT /product="putative lipoprotein" FT /db_xref="InterPro:IPR010824" FT /db_xref="UniProtKB/TrEMBL:D2TTT8" FT /protein_id="CBG87932.1" FT /translation="MKRGCLALSLGLLLLAGCRSHPEIPVSDEQSLVMESTLLAAGITA FT QPPSLRTSDIQPSASSTLYNERQEPVTVHYRFYWYDARGLEMHPLEAPRSVTIPARSSV FT TLYGSANYLGAHKVRLYLYL" FT sig_peptide 1258155..1258214 FT /locus_tag="ROD_11661" FT /note="Signal peptide predicted for ROD11661 by SignalP 2.0 FT HMM (Signal peptide probability 0.971) with cleavage site FT probability 0.954 between residues 20 and 21" FT misc_feature 1258164..1258526 FT /locus_tag="ROD_11661" FT /note="HMMPfam hit to PF07233, Protein of unknown function FT DUF1425, score 3e-62" FT /inference="protein motif:PFAM:PF07233" FT misc_feature 1258176..1258208 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 1258546..1259184 FT /transl_table=11 FT /locus_tag="ROD_11671" FT /product="putative lipoprotein" FT /db_xref="GOA:D2TTT9" FT /db_xref="InterPro:IPR014094" FT /db_xref="UniProtKB/TrEMBL:D2TTT9" FT /protein_id="CBG87933.1" FT /translation="MKMSRYALLAALAIILSGCVAQREPAPVDEVKPAPQQPTQPSEPA FT PVVPSVPTIPEQPGPIEHEDQTAPPAPRVRHYDWNGAMQPMVSKMLQADGVTSGSVLLV FT DSVNNRTNGSLNASEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKA FT IGIARNVGAHYVLYSSAAGNVNAPSLQMQLMLVQTGEIIWSGKGAVQQQ" FT sig_peptide 1258546..1258608 FT /locus_tag="ROD_11671" FT /note="Signal peptide predicted for ROD11671 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.686 between residues 21 and 22" FT misc_feature 1258570..1258602 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 1259165..1259989 FT /transl_table=11 FT /gene="thiK" FT /locus_tag="ROD_11681" FT /product="thiamine kinase" FT /EC_number="2.7.1.89" FT /db_xref="GOA:D2TTU0" FT /db_xref="InterPro:IPR002575" FT /db_xref="InterPro:IPR011009" FT /db_xref="InterPro:IPR014093" FT /db_xref="UniProtKB/TrEMBL:D2TTU0" FT /protein_id="CBG87934.1" FT /translation="MPFSSNKPLARDEVLARYFPQYRPVAEGQNGLSGGSVIIAHSARR FT LVLRRHHDPDAPASHFLRQYHALARLPENLAPKPRLYIPGWMAVDYLHGEIKSALPDTD FT ELAGLLYHLHQQPRFGWRIQLLPLLEQYWQESDPARRTPFWLRLLKRLRQRREPPPLRL FT APLHMDVHAGNIVHTPAGLRLIDWEYAGDGDIALELAAVWVDDDFQHRQLVNAYAARAR FT IMAETLWRQVRRWYPWVLMLKAGWFEYRWRQTGEQQFIRLADASWRQLQTKD" FT misc_feature 1259234..1259869 FT /gene="thiK" FT /locus_tag="ROD_11681" FT /note="HMMPfam hit to PF01636, Aminoglycoside FT phosphotransferase, score 2.1e-24" FT /inference="protein motif:PFAM:PF01636" FT CDS 1260000..1261025 FT /transl_table=11 FT /gene="nagZ" FT /locus_tag="ROD_11691" FT /product="Beta-hexosaminidase" FT /EC_number="3.2.1.52" FT /db_xref="GOA:D2TTU1" FT /db_xref="InterPro:IPR001764" FT /db_xref="InterPro:IPR017853" FT /db_xref="InterPro:IPR019800" FT /db_xref="InterPro:IPR022956" FT /db_xref="UniProtKB/TrEMBL:D2TTU1" FT /protein_id="CBG87935.1" FT /translation="MGPVMLDVEGFELDAEEREILAHPLVGGLILFTRNYHDPEQLREL FT VRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFAALHGLEEGGRLAEEAGWLM FT ASEMIAMDIDISFAPVLDVGHISAAIGERAYHADPAKALAMATRFIDGMHAAGMKTTGK FT HFPGHGAVTADSHKETPTDPRPEAEIRAKDMSVFRALIGENKLDAIMPAHVIYSDVDSR FT PASGSPHWLKTVLRQELGFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMILVCNN FT RKGAVSVLDNLSPIKAERVTRLYHKGTFSRQELMDSPRWKQVSAQLSQLHERWQDQKAG FT H" FT misc_feature 1260153..1260833 FT /gene="nagZ" FT /locus_tag="ROD_11691" FT /note="HMMPfam hit to PF00933, Glycoside hydrolase, family FT 3, N-terminal, score 4.5e-86" FT /inference="protein motif:PFAM:PF00933" FT misc_feature 1260699..1260752 FT /note="PS00775 Glycosyl hydrolases family 3 active site." FT /inference="protein motif:Prosite:PS00775" FT CDS 1261047..1261589 FT /transl_table=11 FT /locus_tag="ROD_11701" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR008886" FT /db_xref="InterPro:IPR022987" FT /db_xref="UniProtKB/TrEMBL:D2TTU2" FT /protein_id="CBG87936.1" FT /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQH FT LLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVVFNPNLFPHENMEGKIDR FT PEEYADIATKCVTNFREKNRDRCLVILSRHDEALDSQRASEVLHHFYEIVWDEEQTHKF FT KNISPHLQRIKAFKTLG" FT misc_feature 1261047..1261580 FT /locus_tag="ROD_11701" FT /note="HMMPfam hit to PF05728, Protein of unknown function FT UPF0227, score 5.3e-106" FT /inference="protein motif:PFAM:PF05728" FT CDS 1261661..1261801 FT /transl_table=11 FT /locus_tag="ROD_11711" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TTU3" FT /protein_id="CBG87937.1" FT /translation="MSIFSAAKLDAHQFWYDQWTACAILSVEEDFHYRNLLLIKGYANN FT F" FT CDS 1261836..1263140 FT /transl_table=11 FT /gene="ndh" FT /locus_tag="ROD_11721" FT /product="NADH dehydrogenase" FT /EC_number="1.6.99.3" FT /db_xref="GOA:D2TTU4" FT /db_xref="InterPro:IPR001327" FT /db_xref="InterPro:IPR013027" FT /db_xref="InterPro:IPR023753" FT /db_xref="UniProtKB/TrEMBL:D2TTU4" FT /protein_id="CBG87938.1" FT /translation="MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHSH FT LWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVMDIDREAKTITIAELRDEKG FT ELLVPERKIAYDTLVMALGSTSNDFNTPGVKEHCIFLDNPHQARRFHQEMLNLFLKYSA FT NLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERILP FT ALPPRISSAAHNELTKLGVRVLTQTMVTSADAGGLHTKDGEYIEADLMVWAAGIKAPDF FT LKEIGGLETNRINQLVVEPTLQTTRDPDVYAIGDCASCPRPEGGFVPPRAQAAHQMATC FT AMNNFLAQMNGKSLKAYQYKDHGSLVSLSNFSTVGSLMGNLTKGSMMIEGRIARFVYIS FT LYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH" FT misc_feature 1261854..1262798 FT /gene="ndh" FT /locus_tag="ROD_11721" FT /note="HMMPfam hit to PF07992, FAD-dependent pyridine FT nucleotide-disulphide oxidoreductase, score 5.9e-34" FT /inference="protein motif:PFAM:PF07992" FT misc_feature 1262349..1262660 FT /gene="ndh" FT /locus_tag="ROD_11721" FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, NAD-binding region, FT score 2.8e-24" FT /inference="protein motif:PFAM:PF00070" FT CDS 1263343..1263882 FT /transl_table=11 FT /locus_tag="ROD_11731" FT /product="putative exported protein" FT /db_xref="GOA:D2TTU5" FT /db_xref="InterPro:IPR008816" FT /db_xref="UniProtKB/TrEMBL:D2TTU5" FT /protein_id="CBG87939.1" FT /translation="MNKSMLAGIGIGVAAALGVAAVAGLNVFDRGPQYAQVVSATPIKE FT TIKTPRKECRNVTVTHRRPVQDENRIAGSVLGAVAGGVIGHQFGGGRGKDVATVVGALG FT GGYAGNQIQGSMQENDTYTSTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDRDPGT FT QIPLDSNGQLVLNNKA" FT sig_peptide 1263343..1263411 FT /locus_tag="ROD_11731" FT /note="Signal peptide predicted for ROD11731 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.696 between residues 23 and 24" FT misc_feature 1263355..1263423 FT /locus_tag="ROD_11731" FT /note="1 probable transmembrane helix predicted for FT ROD11731 by TMHMM2.0 at aa 5-27" FT misc_feature 1263550..1263681 FT /locus_tag="ROD_11731" FT /note="HMMPfam hit to PF05433, Rickettsia 17 kDa surface FT antigen, score 1.3e-14" FT /inference="protein motif:PFAM:PF05433" FT CDS complement(1263946..1264629) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_11741" FT /product="putative tonB-dependent receptor (fragment)" FT /note="pseudogene, N-terminus missing, fragment" FT misc_feature complement(1263946..1264629) FT /locus_tag="ROD_11741" FT /note="HMMPfam hit to PF00593, TonB-dependent receptor, FT beta-barrel, score 2.1e-09" FT /inference="protein motif:PFAM:PF00593" FT CDS complement(1264669..1265304) FT /transl_table=11 FT /locus_tag="ROD_11751" FT /product="TetR-family transcriptional regulator" FT /db_xref="GOA:D2TTU6" FT /db_xref="InterPro:IPR001647" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR011075" FT /db_xref="InterPro:IPR012287" FT /db_xref="InterPro:IPR015893" FT /db_xref="UniProtKB/TrEMBL:D2TTU6" FT /protein_id="CBG87941.1" FT /translation="MTTEPTGCVKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLADL FT VEATGAKAPTLYAEFTNKEGLFRAVLDRYIARFAAKHEAQLFCEEKSAEAALEDYFTAV FT ATCFTSKDTPAGCFMINTSATLAAASSDIAHTVKSRHAMQEQTLTQFLRQRQTRGELPA FT HCNVQNLAEYLNCILQGMSISAREGATFDKLMQITRTTLRMWPELLKA" FT misc_feature complement(1265095..1265235) FT /locus_tag="ROD_11751" FT /note="HMMPfam hit to PF00440, Transcriptional regulator, FT TetR-like, DNA-binding, bacterial/archaeal, score 1e-15" FT /inference="protein motif:PFAM:PF00440" FT CDS 1265545..1265802 FT /transl_table=11 FT /locus_tag="ROD_11761" FT /product="putative exported protein" FT /db_xref="InterPro:IPR010854" FT /db_xref="UniProtKB/TrEMBL:D2TTU7" FT /protein_id="CBG87942.1" FT /translation="MKNVKTLIAAAVLSSLSFASFAAVEVQSTPADQQKVGTISASAGT FT NLGSLQDELAQKADEMGAKSFRITSVSGPNTLHGTAVIYK" FT misc_feature 1265545..1265799 FT /locus_tag="ROD_11761" FT /note="HMMPfam hit to PF07338, Protein of unknown function FT DUF1471, score 2.4e-23" FT /inference="protein motif:PFAM:PF07338" FT sig_peptide 1265545..1265610 FT /locus_tag="ROD_11761" FT /note="Signal peptide predicted for ROD11761 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.982 between residues 22 and 23" FT CDS 1266156..1266866 FT /transl_table=11 FT /locus_tag="ROD_11771" FT /product="putative fimbrial chaperone protein" FT /db_xref="GOA:D2TTU8" FT /db_xref="InterPro:IPR001829" FT /db_xref="InterPro:IPR008962" FT /db_xref="InterPro:IPR016147" FT /db_xref="InterPro:IPR016148" FT /db_xref="UniProtKB/TrEMBL:D2TTU8" FT /protein_id="CBG87943.1" FT /translation="MLPLKKVLSATLIFSSIIVTPFTAHSAGMVPETSLLVIDEATHSG FT TINVKNTDAAPALLYTNIIDLPDDNNGLKLIVTQPVVRLEPGQTQQLRFILQNKTPLDV FT EHYKRVTFEGIPPKKEGKKIKVGINIRQDLPVLIRPAKLAVVTDAWKYLRWSGSGSNVT FT VTNPSKYVVRLAQNVVFQPSATAGRIAKTYILPGETLNVLLTKGIAGDKKAKFFPASRY FT GIEVPSFTADLNAE" FT sig_peptide 1266156..1266233 FT /locus_tag="ROD_11771" FT /note="Signal peptide predicted for ROD11771 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 26 and 27" FT misc_feature 1266174..1266242 FT /locus_tag="ROD_11771" FT /note="1 probable transmembrane helix predicted for FT ROD11771 by TMHMM2.0 at aa 7-29" FT misc_feature 1266237..1266587 FT /locus_tag="ROD_11771" FT /note="HMMPfam hit to PF00345, Bacterial pili assembly FT chaperone, score 6e-25" FT /inference="protein motif:PFAM:PF00345" FT misc_feature 1266594..1266845 FT /locus_tag="ROD_11771" FT /note="HMMPfam hit to PF02753, Bacterial pili assembly FT chaperone, score 1.3e-07" FT /inference="protein motif:PFAM:PF02753" FT CDS 1266876..1269290 FT /transl_table=11 FT /locus_tag="ROD_11781" FT /product="putative fimbrial usher protein" FT /db_xref="GOA:D2TTU9" FT /db_xref="InterPro:IPR000015" FT /db_xref="InterPro:IPR018030" FT /db_xref="UniProtKB/TrEMBL:D2TTU9" FT /protein_id="CBG87944.1" FT /translation="MLKKSCLTRCVGAALYSALPLIVCHSVMVQAEEVTFDTSIIRSRG FT LSADLNHYFANAPRFLPGTHSVQVTVNGKRRGSAAVRFGEDGTLCIDNDFIEFAGLMPV FT ALKSNEACHNITDDYPQAVINALPGQESVELYLPEEALNGLNGEIRNFRHGGSAGILNY FT SLFTTHNDNEGSDSSRYSQASLEGGGNIVDWLLRSRHILTDDNGEKNTESIYTFAEHVF FT AAQKTTMQVGDINAESDVLSGVPITGVQLMPTSALQGSGSGVSVSGIARNAQARVEVRQ FT SGRLIYNTLVPAGPFTLSDVPVVRNNVDLEVTVVESDGASNRFIVPAASVRTSQLSRPR FT GLTVSAGRVRNINADYDEPWVLNLSDGWRLRPGFNLLASGAAAEKYIASGIRAELSLAE FT NWSTSASVAASQEKHGDEKRGLKTELQSTVSLAGSLSLSASAAHFSGGYRELADALVDD FT FQPYDNTYATNLNWSTSLAGAFSAGYTYNQSGGENHDSRYVLLSWSKSFKYASVSVNWQ FT SAVGNVDEDQDDDMIYVNLSIPLGGAQSISSYMRKQGDRTSYGVQNAGSLTQNTYYSLS FT VDRDNDSHENSYNGSLSSNLHYTQLGVGGGSNGNHQRNYNAMLSGGVAMHKSGVTFTPY FT AIRNTFAIAKLNEEKAGVEINTPQGVVWTDAWGQAVIPGLNEWRNSRIEVDANKLPVNM FT TLANGMKYLAAAHASVSEVNFKILNSRRVMIRVKRADGSTLAKGISIVDEKGNYIVTSV FT DDGHVFLNDADQISSLYASDDDHPRLCKIDYTLSNDRDEQAFYEEVDGICQ" FT sig_peptide 1266876..1266968 FT /locus_tag="ROD_11781" FT /note="Signal peptide predicted for ROD11781 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.993 between residues 31 and 32" FT misc_feature 1266975..1269236 FT /locus_tag="ROD_11781" FT /note="HMMPfam hit to PF00577, Fimbrial biogenesis outer FT membrane usher protein, score 8.1e-94" FT /inference="protein motif:PFAM:PF00577" FT misc_feature 1267122..1267151 FT /note="PS00086 Cytochrome P450 cysteine heme-iron ligand FT signature." FT /inference="protein motif:Prosite:PS00086" FT misc_feature 1267746..1267778 FT /note="PS01151 Fimbrial biogenesis outer membrane usher FT protein signature." FT /inference="protein motif:Prosite:PS01151" FT CDS 1269281..1269841 FT /transl_table=11 FT /locus_tag="ROD_11791" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TTV0" FT /protein_id="CBG87945.1" FT /translation="MSIKTVHAIIAAAGLLLSGIVCAEECQLTVSQAEVNYQQIRRDDI FT VSTQQNWHKLAEREVNVNVSCPEPRQMAVLMQGASGEKGRVLFGARGGIGLKIDNVTVD FT GRQYSAGKTTDRLNFTPESGATAPVYLRNSEAAIALDNHTVPEGKQMNFTVTLFPVLND FT SMFNGNTDNTVIEADIRWQLLTK" FT sig_peptide 1269281..1269349 FT /locus_tag="ROD_11791" FT /note="Signal peptide predicted for ROD11791 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.996 between residues 23 and 24" FT CDS complement(1269889..1270851) FT /transl_table=11 FT /locus_tag="ROD_11801" FT /product="putative peptidoglycan-binding protein" FT /db_xref="GOA:D2TTV1" FT /db_xref="InterPro:IPR002482" FT /db_xref="InterPro:IPR005490" FT /db_xref="InterPro:IPR018392" FT /db_xref="UniProtKB/TrEMBL:D2TTV1" FT /protein_id="CBG87946.1" FT /translation="MNTMRLSRWLAFLTLAASMTLALPAQANSRPLPPPGSKLVGENKY FT HVVENNGGSLEAIAKKYNVGFLALLQANPGVDPYVPRPGSVLTIPLQTLLPDVPREGIV FT INLAELRLYYYPPGKDSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRAR FT YKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDA FT DIETLFKQVTPGTKVNIINTPIKASVEPDGARLVEVHQPLSKKIDDDPQMLPITLNSAM FT QAFRSAPQTDAAVMQHVMEVRSGMPVDVTRHHDVNPQAM" FT misc_feature complement(1270135..1270560) FT /locus_tag="ROD_11801" FT /note="HMMPfam hit to PF03734, ErfK/YbiS/YcfS/YnhG, score FT 2.7e-65" FT /inference="protein motif:PFAM:PF03734" FT misc_feature complement(1270582..1270719) FT /locus_tag="ROD_11801" FT /note="HMMPfam hit to PF01476, Peptidoglycan-binding LysM, FT score 4.8e-08" FT /inference="protein motif:PFAM:PF01476" FT sig_peptide complement(1270771..1270851) FT /locus_tag="ROD_11801" FT /note="Signal peptide predicted for ROD11801 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.989 between residues 27 and 28" FT CDS complement(1271062..1274508) FT /transl_table=11 FT /gene="mfd" FT /locus_tag="ROD_11811" FT /product="transcription-repair coupling factor" FT /db_xref="GOA:D2TTV2" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR003711" FT /db_xref="InterPro:IPR004576" FT /db_xref="InterPro:IPR005118" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR014001" FT /db_xref="UniProtKB/TrEMBL:D2TTV2" FT /protein_id="CBG87947.1" FT /translation="MPELQRYTLPVKAGDQRLLGELTGAACATLVAEIAERHVGPVVLI FT APDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRG FT VLIVPVNTLMQRVCPHSYLHGHALVMKKGQSLSRDALRSQLDGAGYRHVDQVMEHGEYA FT TRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQRTLEEVAEINLLPAHEFPTDKT FT AIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLSPLFSYFPANTL FT VVNTGDLEASAERFQADTLARFENRGVDPMRPLLPPEALWLRVDALFSELKRWPRVQLK FT TEHLPDKAANANLGFQTLPDLAVQAQQKAPLDALRRFLESFSGPVVFSVESEGRREALG FT ELLARIKIAPKRIMRLDEATGSGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRR FT QDSRRTINPDTLIRNLAELHPGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYAGDA FT KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRA FT AKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT FT EVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQ FT ILEQAAEGKIDILIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILT FT LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLVVREAILREILRGGQV FT YYLYNDVENIQKAVDRLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII FT ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRL FT EAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGQMETIGFSLYMELLENAVDALKAG FT REPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKSANELEEIKVELID FT RFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIEFAEKNHVNPSWLIGLLQKQ FT PQHFRLDGPVRLKFIQDLAERKTRMEWVRQFMAQLEENAVA" FT misc_feature complement(1271170..1271496) FT /gene="mfd" FT /locus_tag="ROD_11811" FT /note="HMMPfam hit to PF03461, TRCF, score 3.6e-55" FT /inference="protein motif:PFAM:PF03461" FT misc_feature complement(1271788..1272021) FT /gene="mfd" FT /locus_tag="ROD_11811" FT /note="HMMPfam hit to PF00271, DNA/RNA helicase, FT C-terminal, score 1.6e-21" FT /inference="protein motif:PFAM:PF00271" FT misc_feature complement(1272211..1272705) FT /gene="mfd" FT /locus_tag="ROD_11811" FT /note="HMMPfam hit to PF00270, DNA/RNA helicase, DEAD/DEAH FT box type, N-terminal, score 5e-44" FT /inference="protein motif:PFAM:PF00270" FT misc_feature complement(1272604..1272627) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature complement(1272790..1273083) FT /gene="mfd" FT /locus_tag="ROD_11811" FT /note="HMMPfam hit to PF02559, Transcription factor CarD, FT score 7.6e-50" FT /inference="protein motif:PFAM:PF02559" FT CDS complement(1274618..1275691) FT /transl_table=11 FT /locus_tag="ROD_11821" FT /product="putative acyltransferase" FT /db_xref="GOA:D2TTV3" FT /db_xref="InterPro:IPR002656" FT /db_xref="UniProtKB/TrEMBL:D2TTV3" FT /protein_id="CBG87948.1" FT /translation="MKKKELWINQIKGLCICLVVIYHSVITFYPHLTHFQYPFSHLLAK FT CWIYFNLYLAPFRMPVFFFISGFLIRRYISDVSWKESLDKRVWNIFWVLALWGVAQWLA FT ITALNGALAPERELNTAANAAYAASAGQFLRSMLTASTSLWYLYALIVYFAVCKIFSRQ FT AKPLFVCSVALSIAINFLPTPWWGMNSVIRNLPYYSLGAWFGVPLMQWIKEVPLRRYAL FT ACSAVSVLAVAAWLFNVSLLLSVVSIVLIMKLFYQYEQRFGMRESGLMNVIGSNTIAIY FT TTHRILVEAFSLLLIPAINGAVWSPRTELALLLVYPFISLLVCTLFGLAVRKLSQGLLG FT DILFSPPSRPAVASYSR" FT misc_feature complement(1274678..1275679) FT /locus_tag="ROD_11821" FT /note="HMMPfam hit to PF01757, Acyltransferase 3, score FT 1.3e-46" FT /inference="protein motif:PFAM:PF01757" FT misc_feature complement(join(1274699..1274767,1274810..1274878, FT 1274939..1275007,1275128..1275196,1275230..1275298, FT 1275356..1275424,1275485..1275553,1275596..1275655)) FT /locus_tag="ROD_11821" FT /note="8 probable transmembrane helices predicted for FT ROD11821 by TMHMM2.0 at aa 13-32, 47-69, 90-112, 132-154, FT 166-188, 229-251, 272-294 and 309-331" FT CDS 1275953..1277152 FT /transl_table=11 FT /gene="lolC" FT /locus_tag="ROD_11831" FT /product="lipoprotein-releasing system transmembrane FT protein" FT /db_xref="GOA:D2TTV4" FT /db_xref="InterPro:IPR003838" FT /db_xref="InterPro:IPR011925" FT /db_xref="UniProtKB/TrEMBL:D2TTV4" FT /protein_id="CBG87949.1" FT /translation="MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVL FT SVMNGFERELQNNILGLMPQAILSAEHGSLNPRQVPEKAVQLNGVNRIAPLTTGDVVLQ FT SARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLQPGKYNVILGEQLAGQLGVSRGDQIR FT VMVPSASQFTPMGRLPSQRLFTVIGTFAANSEVDGYQMLTNIQDASRLMRYPAGNITGW FT RLWLNEPLKVDTLSQQTLPEGVKWQDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFN FT IITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGALLGAVLGVLLASQL FT NNLMPVIGILLDGASLPVAIEPLQVVVIALVAMALALLSTLYPSWRAAATQPAEALRYE FT " FT misc_feature join(1276025..1276093,1276748..1276816,1276904..1276972, FT 1277030..1277098) FT /gene="lolC" FT /locus_tag="ROD_11831" FT /note="4 probable transmembrane helices predicted for FT ROD11831 by TMHMM2.0 at aa 25-47, 266-288, 318-340 and FT 360-382" FT misc_feature 1276607..1277128 FT /gene="lolC" FT /locus_tag="ROD_11831" FT /note="HMMPfam hit to PF02687, Protein of unknown function FT DUF214, permase predicted, score 4.1e-47" FT /inference="protein motif:PFAM:PF02687" FT CDS 1277145..1277846 FT /transl_table=11 FT /gene="lolD" FT /locus_tag="ROD_11841" FT /product="lipoprotein-releasing system ATP-binding protein" FT /EC_number="3.6.3.-" FT /db_xref="GOA:D2TTV5" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR011924" FT /db_xref="InterPro:IPR015854" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TTV5" FT /protein_id="CBG87950.1" FT /translation="MNKTLLQCDKLCKRYQEGSVQTDVLHDVSFSVGEGEMMAIVGSSG FT SGKSTLLHLLGGLDTPTSGDVIFSGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTA FT LENVAMPLLIGKQNHAEITGRAREMLKAVGLEHRANHRPSELSGGERQRVAIARALVNN FT PRLVLADEPTGNLDARNADSIFQLLGELNRAQGTAFLVVTHDLQLAKRMSRQLEMRDGR FT LTAELSLMGAE" FT misc_feature 1277247..1277807 FT /gene="lolD" FT /locus_tag="ROD_11841" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 1e-65" FT /inference="protein motif:PFAM:PF00005" FT misc_feature 1277268..1277291 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 1277580..1277624 FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT CDS 1277846..1279090 FT /transl_table=11 FT /gene="lolE" FT /locus_tag="ROD_11851" FT /product="lipoprotein-releasing system transmembrane FT protein" FT /db_xref="GOA:D2TTV6" FT /db_xref="InterPro:IPR003838" FT /db_xref="InterPro:IPR011925" FT /db_xref="InterPro:IPR011926" FT /db_xref="UniProtKB/TrEMBL:D2TTV6" FT /protein_id="CBG87951.1" FT /translation="MASPLSLLIGLRFSRGRRRSGMVSLISVISTIGIALGVAVLIVGL FT SAMNGFERELNNRILAVVPHGEIEAVEQPWNNWREALEKVQKVPGIVAAAPYINFTGLV FT ESGANLRAIQVKGVEPQQEQRLSALPSFVRNNAWASFKAGEQQIIIGKGVADALKVKQG FT DWVSIMIPNASADHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPMADAQQYLDMNNTVS FT GIALKVNDVFNANKLVRAAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIG FT VACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLLGSMIGVVIGVA FT VSLQLTPIINAIEKITGHQFLSGDIYFIDFLPSELHWLDVIYVLVTALLLSLVASWYPA FT RRASNIDPARVLSGQ" FT sig_peptide 1277846..1277956 FT /gene="lolE" FT /locus_tag="ROD_11851" FT /note="Signal peptide predicted for ROD11851 by SignalP 2.0 FT HMM (Signal peptide probability 0.637) with cleavage site FT probability 0.471 between residues 37 and 38" FT misc_feature join(1277906..1277974,1278653..1278721,1278797..1278865, FT 1278968..1279036) FT /gene="lolE" FT /locus_tag="ROD_11851" FT /note="4 probable transmembrane helices predicted for FT ROD11851 by TMHMM2.0 at aa 21-43, 270-292, 318-340 and FT 375-397" FT misc_feature 1278506..1279066 FT /gene="lolE" FT /locus_tag="ROD_11851" FT /note="HMMPfam hit to PF02687, Protein of unknown function FT DUF214, permase predicted, score 1.3e-51" FT /inference="protein motif:PFAM:PF02687" FT misc_feature 1278665..1278697 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1278989..1279060 FT /note="PS00027 'Homeobox' domain signature." FT /inference="protein motif:Prosite:PS00027" FT CDS 1279119..1280030 FT /transl_table=11 FT /gene="nagK" FT /locus_tag="ROD_11861" FT /product="N-acetyl-D-glucosamine kinase" FT /EC_number="2.7.1.59" FT /db_xref="GOA:D2TTV7" FT /db_xref="InterPro:IPR000600" FT /db_xref="InterPro:IPR023505" FT /db_xref="UniProtKB/TrEMBL:D2TTV7" FT /protein_id="CBG87952.1" FT /translation="MYYGFDIGGTKIALGVFDNQRKLQWEKRVPTPREGYDAFLDAVCG FT LVAEADQRFGGKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDN FT DANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLILNGKPVTGKSYITGEFGHMRLPVD FT ALTLMGFDFPLRRCGCGQLGCIENYLSGRGFAWLYQHYYHQPLEAPEIIALWEQGDEQA FT RAHVERYLDLLAVCLGNILTIVDPDLVVIGGGLSNFSAITAQLAERLPRHLLPVARVPR FT IERARHGDAGGMRGAAFLHLTD" FT misc_feature 1279128..1279700 FT /gene="nagK" FT /locus_tag="ROD_11861" FT /note="HMMPfam hit to PF00480, ROK, score 2.4e-53" FT /inference="protein motif:PFAM:PF00480" FT misc_feature 1279506..1279589 FT /note="PS01125 ROK family signature." FT /inference="protein motif:Prosite:PS01125" FT misc_feature 1279542..1279565 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT misc_feature 1279998..1280021 FT /note="PS00030 Eukaryotic putative RNA-binding region RNP-1 FT signature." FT /inference="protein motif:Prosite:PS00030" FT CDS 1280047..1280868 FT /transl_table=11 FT /gene="npdA" FT /locus_tag="ROD_11871" FT /product="NAD-dependent deacetylase (regulatory protein Sir FT homolog)" FT /EC_number="3.5.1.-" FT /db_xref="GOA:D2TTV8" FT /db_xref="InterPro:IPR003000" FT /db_xref="UniProtKB/TrEMBL:D2TTV8" FT /protein_id="CBG87953.1" FT /translation="MLSRRGHRLSRFRKNKRHLRERLRQRIFFRDRVVPEVMEKPRVLV FT LTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFARNPQLVQSFYNARRRQLQQPEI FT QPNPAHLALAKLEEALGDRFLLVTQNIDNLHERAGSRNVIHMHGELLKVRCSQSGQILE FT WTGDVTPEDKCHCCQFPASLRPHVVWFGEMPLGMDEIYMALAMADVFIAIGTSGHVYPA FT AGFVHEAKLQGAHTVELNLEPSQVGSEFDEKIYGPASQVVPEFVDKMLKGL" FT misc_feature 1280188..1280709 FT /gene="npdA" FT /locus_tag="ROD_11871" FT /note="HMMPfam hit to PF02146, Silent information regulator FT protein Sir2, score 1.5e-86" FT /inference="protein motif:PFAM:PF02146" FT CDS complement(1281198..1282385) FT /transl_table=11 FT /locus_tag="ROD_11881" FT /product="Major Facilitator Superfamily transporter" FT /db_xref="GOA:D2TTV9" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TTV9" FT /protein_id="CBG87954.1" FT /translation="MSTRFSTLRRIPGGIWIIGFVSLLMDVSSEMIHSLLPLFMATALG FT TPVVIIGLIEGLAEATALCVKVFSGVISDYIGKRKWLAVLGYGLGAISKPLFALASTSG FT MIFSARMIDRVGKGIRGAPRDALVADVTPHEIRGAAYGLRQTLDTMGGFLGPLLAVGLM FT LLWSNDFRAVYWMAVVPAFLAVALLFFGLHEPRTPVVTARTNPVRKENLKRLGVHCWWV FT IGLGGVFTLARFSEAFLVLRAQEVNIPLALIPLVMVAMNIVFSFTAYPFGRLSDRISHR FT RLLQMGLVVLIVADLVLALSNSWVGIIIGVALWGLHMGMTQGLLNTMIARTAPVDLRGT FT AFGFFSLLSGLGLLIASLGAGLLWDIWGSVSTFFAGAVICVITLLLTQFVPEKAE" FT misc_feature complement(join(1281216..1281284,1281297..1281365, FT 1281453..1281521,1281579..1281647,1281690..1281743, FT 1281804..1281872,1282065..1282133,1282170..1282238, FT 1282281..1282349)) FT /locus_tag="ROD_11881" FT /note="9 probable transmembrane helices predicted for FT ROD11881 by TMHMM2.0 at aa 13-35, 50-72, 85-107, 172-194, FT 215-232, 247-269, 289-311, 341-363 and 368-390" FT misc_feature complement(1281291..1282334) FT /locus_tag="ROD_11881" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 2.1e-39" FT /inference="protein motif:PFAM:PF07690" FT CDS 1282531..1282719 FT /transl_table=11 FT /locus_tag="ROD_11891" FT /product="Hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TTW0" FT /protein_id="CBG87955.1" FT /translation="MELDASNIISRGDRKIDNLPFGSVPLIRVTPIAESEIEHLDQSDE FT WASSAATRALMERQIET" FT CDS complement(1282819..1283493) FT /transl_table=11 FT /locus_tag="ROD_11901" FT /product="Putative lipoprotein" FT /db_xref="UniProtKB/TrEMBL:D2TTW1" FT /protein_id="CBG87956.1" FT /translation="MKFIKYIKIFGCVLFVVSCSSSPKNYERDGSDIPGYSKNEYYGSI FT EFSRPKGLTSYTMDNIDLYYNDPGTYTSVGSKGLTSNPGVATLLPFLVRPTVQSYKNLD FT SLVQEKGVLTKDSLTFKIRKFKDNRQLKQIDHRFNIDYFNIKGDLWAATKFPDLFWVDC FT GKKHRNDTIKIIPYDVHFVDPYVTAKNVPAKYRDEALKNILYIRFIDFDGCIKAGKDGQ FT IL" FT sig_peptide complement(1283419..1283493) FT /locus_tag="ROD_11901" FT /note="Signal peptide predicted for ROD11901 by SignalP 2.0 FT HMM (Signal peptide probability 0.753) with cleavage site FT probability 0.353 between residues 25 and 26" FT misc_feature complement(1283437..1283469) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1284176..1287013) FT /transl_table=11 FT /locus_tag="ROD_11911" FT /product="putative adhesin autotransporter" FT /note="one of 3 similar CDSs in CR, 86% ID to ROD16841, 84% FT ID ROD11971" FT /db_xref="GOA:D2TTW2" FT /db_xref="InterPro:IPR003991" FT /db_xref="InterPro:IPR004899" FT /db_xref="InterPro:IPR005546" FT /db_xref="InterPro:IPR006315" FT /db_xref="InterPro:IPR011050" FT /db_xref="InterPro:IPR012332" FT /db_xref="UniProtKB/TrEMBL:D2TTW2" FT /protein_id="CBG87957.1" FT /translation="MKITAFRQFSETQRAFSLGICCIGLAVYPGYTQAATIGSQTGVLI FT EVSNGDHIVADTADDDLYGIKTPLGQQAATVRLGSGVTVTADDPERNAKGVMVEGADSV FT LTADRLTINVSGKDATGLWLFANNIQADLGTGSVITASTSEGSSTNGVVIRNGSALTAD FT QLTVETAGYASTGLNIGGYGSLVDLGSESIISASGRNSYGIFISGIDGDAARGPAQLTA FT TALSIKAEGNSAYGMYIQKNAVVDIGTGSVITAAGDYAMGITSFGQFNADALTIDVQGS FT DADGIEARGGSATIGADTHISSAAGSALVASEGATIDFRGSESARNTLFSGGGYAAAAV FT TGAAITLSDTDITVGPGGDLGLGLVALDGGTISGKNLSITGAAGTRGIYAMTGGSIDLT FT GDLSVSMASADETAFYSTYYEGYAPGSISATGKMLIVGSADARGGKIDIDMAPGSVWTG FT KALSDNVNGGYLNVSLNDSVWNISGSSNLDNLSLTGSTVDFASMASDPDVFSTLTVASL FT SGNGSFVMRTDLVGDGNGVNNGGDLLRVTGSSAGSHLLTFKNQGSMATTGNEVLTVVET FT ADGGASFTAASDVELGGYLYRVRQSGTDWELYSSAQAPDPVPTPEPASIPEPAPTPVPA FT PAPDRPQLTSAADAGGNYLNVGYVLSYVETSTLMQRMGDLRQQNGKGDMWIRGYGGKAD FT SFSGGTLDGFSMNYSGIQIGADKRVSEDLPLSVGLFLGTTSASPDYRGGDGSVRSDYAG FT LYASWIAANGFYSDLVLKGSRQKNSFTVRDSQNNRVSGNGNSSGVSVSLEAGQRFALPV FT TTAGFYAEPQLQFTWNHQNSTGMRASNGLNTDLGSYESLLGRASLLLGYEKETGNSRVN FT VYLKTGAIREFAGDTSFTLNGSRENHSFRGNGWNNGLGVSAQFNNTHTLYLEVDNTSGE FT TFNQRQLNAGYRFSF" FT misc_feature complement(1284203..1284982) FT /locus_tag="ROD_11911" FT /note="HMMPfam hit to PF03797, Autotransporter beta-domain, FT score 5.3e-33" FT /inference="protein motif:PFAM:PF03797" FT misc_feature complement(1285187..1285555) FT /locus_tag="ROD_11911" FT /note="HMMPfam hit to PF03212, Pertactin, score 1.2e-43" FT /inference="protein motif:PFAM:PF03212" FT sig_peptide complement(1286912..1287013) FT /locus_tag="ROD_11911" FT /note="Signal peptide predicted for ROD11911 by SignalP 2.0 FT HMM (Signal peptide probability 0.996) with cleavage site FT probability 0.996 between residues 34 and 35" FT CDS complement(1287612..1288871) FT /transl_table=11 FT /locus_tag="ROD_11921" FT /product="Conserved hypothetical protein" FT /db_xref="InterPro:IPR007835" FT /db_xref="UniProtKB/TrEMBL:D2TTW3" FT /protein_id="CBG87958.1" FT /translation="MKNEQAAEILQDIFQHAVDSARAGPAILANLPEKPRGRCVVIGAG FT KASAAMAAAVDAAWPDVDVSGVVVTRYGYAVPAGRIRIIEAAHPVSDSMSEVAAMLIVE FT ALRGLTSDDLVLALISGGGSALMALPAPGLTLKDKQTITRALLHSGASIKEMNLVRRHL FT SAVKGGKLARMAQPARIVSLIISDVPGDSPADVASGPTVADQSTPQQALQVLQRYAIPV FT SRPVDELLNKQASPVDNTANSEVRLIATPQLALQAAALAVRRHGLTPIILGDAIEGESR FT EVAVVMAGIAQSVKQYGHPVRGPAVLLSGGETTVTVNNGQHGKGGRNTEFSLSLACALE FT GESGIWAIAGDSDGIDGTEDAAGALVFPDTLTRGKMGGLNAGNYLDVHDSYSFFHAIDD FT LVITGPTLTNVNDIRAIMII" FT misc_feature complement(1287636..1287962) FT /locus_tag="ROD_11921" FT /note="HMMPfam hit to PF05161, MOFRL, score 3.1e-52" FT /inference="protein motif:PFAM:PF05161" FT CDS complement(1288874..1289962) FT /transl_table=11 FT /gene="ttuC'" FT /locus_tag="ROD_11931" FT /product="Tartrate dehydrogenase" FT /EC_number="1.1.1.93" FT /db_xref="GOA:D2TTW4" FT /db_xref="InterPro:IPR001804" FT /db_xref="InterPro:IPR011829" FT /db_xref="InterPro:IPR019818" FT /db_xref="InterPro:IPR024084" FT /db_xref="UniProtKB/TrEMBL:D2TTW4" FT /protein_id="CBG87959.1" FT /translation="MRNYKIAAIPADGIGPEVISAGVEVLHALTRHDPQLKFDVETFDW FT GSDYYKKHGVMMPEEGLNKLKTFDAIYFGAVGAPDVPDHITLWGLRLPICQGFDQYANV FT RPTKILPGVTSPLRNRGPGDLDWVIVRENSEGEYSGNGGRAHRGLPEEVGTEVAIFTRV FT GVTRIMRYAFRLAQSRPRKLLTVVTKSNAQRHGMVMWDEIAAEVAQEFPDVQWDKMLVD FT AMTHRMTLHPRTLDTIVATNLHADILSDLAGALAGSLGVAPTANIDPERRFPSMFEPIH FT GSAFDITGKGIANPIATFWTAVQMLEHLGERNAAALIMESIEYVCEKGILTPDVGGTAS FT TAEVTRAVVEFIEARATIAGTV" FT misc_feature complement(1288919..1289950) FT /gene="ttuC'" FT /locus_tag="ROD_11931" FT /note="HMMPfam hit to PF00180, Isocitrate/isopropylmalate FT dehydrogenase, score 4.1e-97" FT /inference="protein motif:PFAM:PF00180" FT CDS complement(1289977..1291014) FT /transl_table=11 FT /locus_tag="ROD_11941" FT /product="Major Facilitator Superfamily transporter" FT /db_xref="GOA:D2TTW5" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TTW5" FT /protein_id="CBG87960.1" FT /translation="MNNDIEKKVIRKVTLRIIPFIMLLYFIAFLDRVNIGFAALTMNED FT LGFSPTVFGLGAGIFFLGYFLFEVPSNLILHKVGVRIWIARVMITWGLVSGCMAFVQGT FT TSFYILRFLLGVAEAGFFPGIILYLSYWFPAVKRAQVTAIFMAAAPLSTALGSPISAAL FT LEMHGFLGYAGWQWMFVLEAVPALVLGVVVLFFLTDRPAKAKWLTDEERAWLENTMQAE FT EQARTAKQSHSSAWKGLADKRVLALALVYFGTSAGLYTLGIWSPQIIRSFGASSLEIGF FT LNAFPAVIGVIAMILWARHSDRTKERSWHVIGACLLAISALIVLILSARAAKPQTAEIP FT HPHTH" FT misc_feature complement(join(1290019..1290087,1290121..1290189, FT 1290217..1290285,1290424..1290492,1290520..1290588, FT 1290607..1290675,1290703..1290771,1290808..1290867, FT 1290910..1290978)) FT /locus_tag="ROD_11941" FT /note="9 probable transmembrane helices predicted for FT ROD11941 by TMHMM2.0 at aa 13-35, 50-69, 82-104, 114-136, FT 143-165, 175-197, 244-266, 276-298 and 310-332" FT misc_feature complement(1290028..1290954) FT /locus_tag="ROD_11941" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 6.5e-41" FT /inference="protein motif:PFAM:PF07690" FT misc_feature complement(1290604..1290690) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT misc_feature complement(1290724..1290756) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 1291143..1292051 FT /transl_table=11 FT /locus_tag="ROD_11951" FT /product="LysR-family transcriptional regulator" FT /db_xref="GOA:D2TTW6" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TTW6" FT /protein_id="CBG87961.1" FT /translation="MDINQLRCFVVLGDELHFGRAARKLEMMPASLSRFIKLLEEDLAI FT RLLNRSTRNVSLTPEGAEFLNEAKVVIADFDALRLRFRKNIPSQKRTLRIGAIDSAARG FT LLPELLNLFVRQYPEADIHITEDKSHSLIPRLISGWLDIIFVRPPEDVDATLTTRFIAN FT ESCVLAVPALHRLVSYDEVSIDDFFNEPVIVPERRTRPHSHDLTMNVFKAGGRSPVIAQ FT YAEEKQTILSLVAAGLGIALVPASYKNMNADGVRYLPLSPMQHIEGLPLSAMWHQGNNN FT MYVRSLLDMLSGNIEELTRNL" FT misc_feature 1291149..1291328 FT /locus_tag="ROD_11951" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 2.3e-12" FT /inference="protein motif:PFAM:PF00126" FT misc_feature 1291188..1291253 FT /note="Predicted helix-turn-helix motif with score FT 1238.000, SD 3.40 at aa 16-37, sequence FT LHFGRAARKLEMMPASLSRFIK" FT misc_feature 1291398..1292030 FT /locus_tag="ROD_11951" FT /note="HMMPfam hit to PF03466, LysR, substrate-binding, FT score 1e-40" FT /inference="protein motif:PFAM:PF03466" FT CDS complement(1292151..1292564) FT /transl_table=11 FT /locus_tag="ROD_11961" FT /product="hypothetical protein" FT /db_xref="GOA:D2TTW7" FT /db_xref="InterPro:IPR000182" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:D2TTW7" FT /protein_id="CBG87962.1" FT /translation="MRGPASACSLDELSDFSRNGLLLAAYTPDAVPVGFIAGKVEGKWM FT HIAEMDVHPDWQRRGIGKRLMQAILHKGKLRGLTGATLTTDKMAPFNARFYARSGFEIV FT EGDARPLHLAAMIEDEFAKGFDPSRRVAMSIVF" FT misc_feature complement(1292259..1292495) FT /locus_tag="ROD_11961" FT /note="HMMPfam hit to PF00583, GCN5-related FT N-acetyltransferase, score 1.1e-15" FT /inference="protein motif:PFAM:PF00583" FT CDS complement(1292797..1295679) FT /transl_table=11 FT /locus_tag="ROD_11971" FT /product="putative adhesin autotransporter" FT /note="one of 3 similar CDSs in CR, 84% ID to ROD16841 and FT ROD11911" FT /db_xref="GOA:D2TTW8" FT /db_xref="InterPro:IPR003991" FT /db_xref="InterPro:IPR004899" FT /db_xref="InterPro:IPR005546" FT /db_xref="InterPro:IPR006315" FT /db_xref="InterPro:IPR011050" FT /db_xref="InterPro:IPR012332" FT /db_xref="UniProtKB/TrEMBL:D2TTW8" FT /protein_id="CBG87963.1" FT /translation="MEITAFRQFSETQRIFGLGIFCIGLAIYPGYSLGATIGSQNGALI FT EVSDGDHIVADTAGDNLYGVTTTPGQQATVRLGSGVSVTVDDPDRNARGVLVQGANSVL FT TADRLTVNVNGKNAKGLWLSSDTIQADLGTGSVIAASASGSSLAEGISVGNGSALTADH FT LTVEATGLSSTGLNISGYGSRADLGSGSVINTSGSNSTGIYVAGMNGNAARGPAQLTAT FT ALTIKAEAEGSIAYGMYIRENAVVDIGTGSVITAASDYAMGVLIEDSGQFNADALTIDV FT QGIFAGGIDVRGGSATVGADSHISSAAGSALFAFGADSTITFRGSENARNTLFSGFAAV FT GAQEYASITLSDTDITVDGGGDFAAGLATSDDGTISGENLSVTGAAGTAGLYVMRGGSI FT DLTGDLSVSMASADETAFGTQHYNGYAPGSISATGKMLIVGSADARGGKIDIDMAPGSV FT WTGKAFSDNVNGGYLNVALNNSVWNLSGSSNLDNLSLTGSTVDFASMASDPDVFSTLTV FT ASLSGNGSFVMRTDLVGDGNGVNNGGDLLRVTGSSAGSHLLTIKNQGSMATTGNEVLTV FT VETADGGASFAAASDVELGGYLYSVRQSGTNWELYSSGQVPDPVPAPEPAPTPAPVPTP FT GPASTPEPVPTPVPAPAPGRPQLTNAADAGGNYLNVGYVLSYVETSTLMQRMGNLRQQN FT GKGDMWIKGYGGKADSFAGGSLDGFSMNYSGFQIGADKRVSEDLPLSVGLFLGTTSASP FT DYRGGDGSVRSDYAGLYASWIAANGFYSDLVLKGSRQKNSFTVRDSQNNRVSGDGNSSG FT VSVSLEAGQRFALPVPTAGFYAEPQLQFTWNHQNSTGMRASNGLDTDLGSYESLLGRAS FT LLLGYEKETGNSRVNVYLKTGAIREFAGDTSFTLNGSRENHSFRGNGWNNGLGVSAQFN FT NAHTLYLEVDSTSGETFNQRQVNAGYRFSF" FT misc_feature complement(1292839..1293603) FT /locus_tag="ROD_11971" FT /note="HMMPfam hit to PF03797, Autotransporter beta-domain, FT score 1.4e-31" FT /inference="protein motif:PFAM:PF03797" FT misc_feature complement(1293844..1294212) FT /locus_tag="ROD_11971" FT /note="HMMPfam hit to PF03212, Pertactin, score 1.5e-44" FT /inference="protein motif:PFAM:PF03212" FT misc_feature complement(1295575..1295643) FT /locus_tag="ROD_11971" FT /note="1 probable transmembrane helix predicted for FT ROD11971 by TMHMM2.0 at aa 13-35" FT CDS complement(1296371..1298170) FT /transl_table=11 FT /locus_tag="ROD_11981" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TTW9" FT /db_xref="InterPro:IPR010262" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR013766" FT /db_xref="UniProtKB/TrEMBL:D2TTW9" FT /protein_id="CBG87964.1" FT /translation="MGHPSVYPTGATLYDPQRAWSGYTLFQAAGHGAVLVDMNGCVVRE FT WPELHGFPNKILPGGAILGHSGERDPRYGMQDMLDLIQVDWEGNITWQFDRYEQISDPG FT SETRWMARAHHDYQRAGNPVGYYAPGLEPQVTGGNTLILAHTNLINEAISDKLLLDDTI FT IEVDWQGNVVWEWRCSDHFHELGFDDAARTALYNNPNMRASGGGMGDWMHINSMSALGP FT NKWYDAGDQRFHPDNIIWDARESNIIAIIDKQSGKIVWQLGPDYSKPELKHIGWIIGQH FT HAHLIPQGLPGAGNILIFDNGGWAGYGAPNPASADGIKNAWRDYSRVLEINPITLDIEW FT RYSPYEADLPQPTDSYRFYSPYISNMQRLENGNTLINEGSNGRIFEVTRDHEIVWEYIS FT PFWGKTLNNNMVYRAYRIPYFWIPQLTQPQETPIAAVDVRTLRQPSAAAAGPAQSVVRV FT AGVQPYSKNADALCVATDNDTLRRSPKLFQVAESAFRPVNAASELESERPVLLFVGAER FT CVHCRKLWQLLAHEQLQSPLAALDTCYLDADRNQELAAALGVRGLPTLLVLKHGQPAQR FT GPQTLSLEALAGWLKNVEGEQQK" FT misc_feature complement(1296395..1296538) FT /locus_tag="ROD_11981" FT /note="HMMPfam hit to PF00085, Thioredoxin domain, score FT 0.00014" FT /inference="protein motif:PFAM:PF00085" FT CDS complement(1298192..1298935) FT /transl_table=11 FT /locus_tag="ROD_11991" FT /product="ABC transporter, ATP-binding component" FT /db_xref="GOA:D2TTX0" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TTX0" FT /protein_id="CBG87965.1" FT /translation="MISSTLVSFHHVRKSWQQVTALQNVSLDIAAGELVALVGSSGCGK FT STLLRMLVGLESVSQGEIRINGERVTGVGKERGIVFQEPRLFPWLKVIDNVMLGLADEK FT LSRAEKRQRAEEMLARVQLTEFAHALPAQLSGGMAQRVAIARGLVARPQILMLDEPFSA FT LDALTRHTLQQVLLQIHRSAGTTTLLVTHDVEEAVALADRVVVFSPRPGRIRDIVSLTL FT PHPRQRDDTAFIAACRQIRNLITSG" FT misc_feature complement(1298306..1298842) FT /locus_tag="ROD_11991" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 2.6e-65" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(1298492..1298536) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(1298798..1298821) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(1298932..1300500) FT /transl_table=11 FT /locus_tag="ROD_12001" FT /product="ABC transporter, permease component" FT /db_xref="GOA:D2TTX1" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TTX1" FT /protein_id="CBG87966.1" FT /translation="MSQMILRTGNADRPGVRPDGWPWLLPALLLLLWYFAAREQWMPEQ FT ILPAPSVVAETALSLLNSDLLAQWGFSLRHLALGLLLGTAAGTLLGALFGLVPAVAQRV FT EPLFYALAQIPTLGWIPLFMVLFGIDNGLKLAVIIKTTVVPLTINTQQAVTSVPLMLSE FT AGKVMNFSRWQRLRWLVIPASLPGWFTGLRLALSQAWVSLIVVELLASSEGIGYLMVWG FT RQLFQLDIVFVIIVVVGLSGMIMEWAANRACSRLVYWPQPAAGRLAWKPQASWRALQLP FT VMLLALWQLASQWSWIDSTLFSSPQAVAERFIQGALNGELTAAMLASLGRAFVGGALGI FT ASGLLCGLILALRPRAGKIFTPTLNVLRHIALFAWLPLLTAWVGNDNGGKIVFIALASF FT FPMFFSTLQAVRQRNPQLDEVARVLRLGALTRLRSLILPGAAPGIFAGLRLALIYAWLG FT NIGAEYFMSSGPGIGSLMINAQQLLDMPTILCGMVLVGITGAALDKAGRVLELRATRWR FT QQEPL" FT misc_feature complement(1298956..1299528) FT /locus_tag="ROD_12001" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.6e-23" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(join(1298995..1299048,1299130..1299198, FT 1299280..1299339,1299352..1299411,1299445..1299513, FT 1299751..1299819,1299838..1299906,1300114..1300182, FT 1300201..1300269,1300390..1300443)) FT /locus_tag="ROD_12001" FT /note="10 probable transmembrane helices predicted for FT ROD12001 by TMHMM2.0 at aa 20-37, 78-100, 107-129, 199-221, FT 228-250, 330-352, 364-383, 388-407, 435-457 and 485-502" FT misc_feature complement(1299727..1300308) FT /locus_tag="ROD_12001" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 3.2e-19" FT /inference="protein motif:PFAM:PF00528" FT CDS 1300723..1301790 FT /transl_table=11 FT /locus_tag="ROD_12011" FT /product="ABC transporter, periplasmic binding component" FT /db_xref="InterPro:IPR015168" FT /db_xref="UniProtKB/TrEMBL:D2TTX2" FT /protein_id="CBG87967.1" FT /translation="MMKVIFSRALIALTAIVSLMSGGHAEELRAIRIGVPDQSAGSQPF FT IEGPVGMAYIRHQLEAVFTPQGVKVEWQFFKGAGPAVNEALANRQLDFVYLGDLAAIIG FT KANGLPTRLLLGSRGSESYLAATRASGIKGLADLKGKRVAVYRGTADQLAFDRALHTVG FT LTEQNLQVINLDWNAGKAALAAGRVDAVWGGVSLLALRGDKIDVVVKSGDSGRQNTTQA FT GFLGTQAFIDAWPQATQQIIDVLVKNAAEISDPANRDSWSAEMARQSQIPRTLFLEELQ FT PQDLNFTTSPRIDPFLIDSFRSSVEQAKSGRLIRNAFDAGGWGEGKYVEQAIKTLNLEN FT HWPQYDTRGQPLNAG" FT sig_peptide 1300723..1300797 FT /locus_tag="ROD_12011" FT /note="Signal peptide predicted for ROD12011 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.994 between residues 25 and 26" FT misc_feature 1301092..1301310 FT /locus_tag="ROD_12011" FT /note="HMMPfam hit to PF09084, NMT1/THI5 like, score FT 1.4e-09" FT /inference="protein motif:PFAM:PF09084" FT CDS complement(1301787..1302725) FT /transl_table=11 FT /locus_tag="ROD_12021" FT /product="LysR-family transcriptional regulator" FT /db_xref="GOA:D2TTX3" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TTX3" FT /protein_id="CBG87968.1" FT /translation="MHLDFRQLRNFVALVEYGSFNRAAEAVCLSQSAFSRSIQALEQSV FT GHALFYRQSKLPTLTPHGQTLLPYARRFQELNIELSSQLREADDAQSGEVAFGCGPAPG FT ARLIPLAVGDYHRRLPQVRVCFHIDNWFALHHALTSQQYPFVVADSWQAELDPQLRVQP FT LSPQRCFFVCHADHPLAQQGPVSVQAMLRYPFAAPYLPPGVRKVLATLSQQQDFTPAIQ FT CDHTYALFSTLAHTDAISFASEDGFALCQNSHRLVKLELSDLPDEWRLMQTRFAIISPV FT HAVLSPLAETLIETILHADRQYPQPALAEKA" FT misc_feature complement(1301823..1302464) FT /locus_tag="ROD_12021" FT /note="HMMPfam hit to PF03466, LysR, substrate-binding, FT score 3.4e-28" FT /inference="protein motif:PFAM:PF03466" FT misc_feature complement(1302195..1302215) FT /note="PS00290 Immunoglobulins and major histocompatibility FT complex proteins signature." FT /inference="protein motif:Prosite:PS00290" FT misc_feature complement(1302534..1302713) FT /locus_tag="ROD_12021" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 3e-19" FT /inference="protein motif:PFAM:PF00126" FT misc_feature complement(1302579..1302671) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature complement(1302609..1302674) FT /note="Predicted helix-turn-helix motif with score FT 1482.000, SD 4.23 at aa 18-39, sequence FT GSFNRAAEAVCLSQSAFSRSIQ" FT CDS complement(1302979..1304025) FT /transl_table=11 FT /gene="potD" FT /locus_tag="ROD_12031" FT /product="spermidine/putrescine ABC transporter, FT substrate-binding protein" FT /db_xref="GOA:D2TTX4" FT /db_xref="InterPro:IPR001188" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:D2TTX4" FT /protein_id="CBG87969.1" FT /translation="MKKWSRHLLAAGALAIGMSAAHADDSKTLYFYNWTEYVPPGLLEQ FT FTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKAKL FT TNFHNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNSDSIDPKTVTSWADLWKPEYKGSL FT LLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGE FT VNLGMVWNGSAWVARQAGTPLEVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRP FT EVAKEVAETIGYPTPNLAARKLLSPEVANDKSLYPDAQTISKGEWQNDVGAASAIYEEY FT YQKLKAGR" FT misc_feature complement(1303171..1304001) FT /gene="potD" FT /locus_tag="ROD_12031" FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein, family 1, score 1.4e-11" FT /inference="protein motif:PFAM:PF01547" FT sig_peptide complement(1303957..1304025) FT /gene="potD" FT /locus_tag="ROD_12031" FT /note="Signal peptide predicted for ROD12031 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 23 and 24" FT CDS complement(1304077..1304868) FT /transl_table=11 FT /gene="potC" FT /locus_tag="ROD_12041" FT /product="spermidine/putrescine ABC transporter, permease FT protein" FT /db_xref="GOA:D2TTX5" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TTX5" FT /protein_id="CBG87970.1" FT /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTTK FT WYGLLINNDSLLQAARHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFVVM FT MSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLEAAK FT DLGASELTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKIYSMV FT KVGVSPEVNALATILLVLSLVMVIASQLIARDKTKSLSRQA" FT misc_feature complement(1304086..1304703) FT /gene="potC" FT /locus_tag="ROD_12041" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.4e-14" FT /inference="protein motif:PFAM:PF00528" FT misc_feature complement(join(1304113..1304181,1304284..1304343, FT 1304425..1304493,1304506..1304574,1304611..1304679, FT 1304788..1304856)) FT /gene="potC" FT /locus_tag="ROD_12041" FT /note="6 probable transmembrane helices predicted for FT ROD12041 by TMHMM2.0 at aa 5-27, 64-86, 99-121, 126-148, FT 176-195 and 230-252" FT misc_feature complement(1304332..1304418) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT misc_feature 1304879..1315433 FT /note="putative lambdoid prophage remnant" FT /note="CRPr13" FT repeat_region 1304879..1304890 FT /note="12 bp direct repeat" FT CDS join(1305339..1305797,1305800..1306459) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_12051" FT /product="putative tail fiber protein (pseudogene)" FT /note="pseudogene, truncated by frameshift mutation" FT misc_feature 1305339..1305740 FT /locus_tag="ROD_12051" FT /note="HMMPfam hit to PF08400, Prophage tail fibre FT N-terminal, score 4e-93" FT /inference="protein motif:PFAM:PF08400" FT misc_feature 1305899..1306078 FT /locus_tag="ROD_12051" FT /note="HMMPfam hit to PF01391, Collagen triple helix FT repeat, score 4.5e-12" FT /inference="protein motif:PFAM:PF01391" FT misc_feature 1306079..1306231 FT /locus_tag="ROD_12051" FT /note="HMMPfam hit to PF01391, Collagen triple helix FT repeat, score 5.5e-11" FT /inference="protein motif:PFAM:PF01391" FT misc_feature 1306235..1306426 FT /locus_tag="ROD_12051" FT /note="HMMPfam hit to PF06820, Putative prophage tail FT fibre, C-terminal, score 1.3e-45" FT /inference="protein motif:PFAM:PF06820" FT CDS 1306464..1306733 FT /transl_table=11 FT /locus_tag="ROD_12061" FT /product="putative tail fibre protein" FT /db_xref="InterPro:IPR009640" FT /db_xref="UniProtKB/TrEMBL:D2TTX6" FT /protein_id="CBG87972.1" FT /translation="MNILKKLMQRLCGCGKHDDRENGELLTAQLRLGPADILESDENGI FT IPEQARVITQVVILDADKKQIQCVVRPLQILRADGTWENIGGMK" FT misc_feature 1306545..1306730 FT /locus_tag="ROD_12061" FT /note="HMMPfam hit to PF06820, Putative prophage tail FT fibre, C-terminal, score 6.8e-41" FT /inference="protein motif:PFAM:PF06820" FT CDS 1306960..1309308 FT /transl_table=11 FT /gene="espX7" FT /locus_tag="ROD_12071" FT /product="putative T3SS effector protein EspX7" FT /note="homologue of ECs1560 found on Sp6" FT /db_xref="InterPro:IPR001646" FT /db_xref="UniProtKB/TrEMBL:D2TTX7" FT /protein_id="CBG87973.1" FT /translation="MLPTTNIPVNSGIISFEGPVGSPSNEDIKVALEKWCAEGDFREHR FT HEVASKILDVISTHGETLSISEPITTLPDLLPGSLKELVLNGCTDLKSISYLPPGLSSL FT SMVGCSSLEVISCNIPSTVGNLSLCHCGSLKYIEGSFPEALRNSVYLNGCNSLNESQCQ FT FLAYDVSQGRVCLSKAELTADLMWLSANRTGEESAEELNYSGCDLSGLSLVGLNLSSVN FT FSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALLENSNFSNSN FT LKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDVKELFSEKSNSINLGGCY FT IDLSDIQENILSVLDNYTKSNKSILLTMNTSDDKYNHDKVRAAEELIKKISLDELAAFR FT PYVKMSLADSLSIHPYLNNANIQQWLEPICDDFFDTIMSWFNNSIMMYMGNGSLLQAGM FT YFERHPGAMVSYNSSFIQIVMNGSRRDGMQERFRKLYEVYLKNEKVYPVTQQSDFGLCD FT GSGKPDWDDDSDLAYNWVLLSSQDDGMAMMCSLSHMADMLSPDTSTNWMSFFLYKDGEV FT QNTFGYSLSNLFSESFPIFSIPYHKAFSQNFVSGILDILISDNELKERFIEALNSNKSD FT YKMIADDQQRKLACVWNPFLDGWELNAQHVDMIMGSHVLKDMPLRKQAEILFCLGGVFC FT KYSSSDMFGTEYDSPEILRRYANGLIEQAYKIDPQVFGSVYYYNDILDRLQGRNNVFTC FT TTVLTDMLTEHAKESFPEIFSLYYPVAWR" FT misc_feature 1307254..1307286 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1307575..1307694 FT /gene="espX7" FT /locus_tag="ROD_12071" FT /note="HMMPfam hit to PF00805, Pentapeptide repeat, score FT 7.7e-06" FT /inference="protein motif:PFAM:PF00805" FT misc_feature 1307710..1307826 FT /gene="espX7" FT /locus_tag="ROD_12071" FT /note="HMMPfam hit to PF00805, Pentapeptide repeat, score FT 0.00026" FT /inference="protein motif:PFAM:PF00805" FT misc_feature 1307821..1307844 FT /note="PS00030 Eukaryotic putative RNA-binding region RNP-1 FT signature." FT /inference="protein motif:Prosite:PS00030" FT CDS join(1309900..1311432,1311434..1311970,1311970..1313076, FT 1313080..1313295) FT /pseudo FT /transl_table=11 FT /gene="espN1" FT /locus_tag="ROD_12081" FT /product="putative T3SS effector protein EspN1 FT (pseudogene)" FT /note="pseudogene, fragmented by two frameshift mutations FT and a premature stop codon" FT CDS complement(1313678..1315039) FT /transl_table=11 FT /gene="espK" FT /locus_tag="ROD_12111" FT /product="putative T3SS effector protein EspK" FT /note="homologue of ECs1568 found on Sp6" FT /db_xref="UniProtKB/TrEMBL:D2TTX8" FT /protein_id="CBG87975.1" FT /translation="MLPTSQLRPSGTFCSYSAETSAGIKSEITPTQIEEARASGRLYIK FT DCDIEYLPQLPNEITSVTIENCNNLITLTGLPVNTQNLSVINCEKLQITDIPSTVKNLH FT IELTDSPFIHIISEGIDALTVCHCHISGVPESVRHLEIRGYATDGIKNVPNGLSSLSIN FT SYTPENQARIDSLISPSLQTLSLTGCSNIILPEKLPDSVRSVTIHVEQKTTWNIVAEGV FT PDGLDLDLQNVLLSPDVIKEKNITFQGNVLDAALHFRPGDIVYGLSSPREKLVNSIKLV FT NDFSKKDIVIQNTLTNAVWDARTPRKYKQDSLIKRALNEHERGTKFKQCLKNHNNYNVI FT MADLSVYNRDKLWAKTSKAGLEFQTLIRNRTVMFCADELVNSLKLIANKSEGYGQSITA FT SELRWIYRNKDNSQIMKNIKFYLHGKEIPAERILDTPEWKDYRPKYSGSTYKYS" FT misc_feature complement(1314473..1314505) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1315402..1316265) FT /transl_table=11 FT /gene="potB" FT /locus_tag="ROD_12131" FT /product="spermidine/putrescine ABC transporter, permease FT protein" FT /db_xref="GOA:D2TTX9" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TTX9" FT /protein_id="CBG87976.1" FT /translation="MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVK FT MVFTLDNYARLLDPLYFQVLLHSLNMALIATLACLALGYPFAWFLAKLPQKVRPLLLFL FT LIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPGAVIIGLVYILLP FT FMVMPLYSSIEKLDKPLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF FT YVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASRLLNKK FT ATEIDN" FT misc_feature complement(1315414..1316073) FT /gene="potB" FT /locus_tag="ROD_12131" FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.8e-14" FT /inference="protein motif:PFAM:PF00528" FT repeat_region 1315422..1315433 FT /note="12 bp direct repeat" FT misc_feature complement(join(1315450..1315518,1315618..1315686, FT 1315747..1315815,1315906..1315974,1315993..1316061, FT 1316155..1316223)) FT /gene="potB" FT /locus_tag="ROD_12131" FT /note="6 probable transmembrane helices predicted for FT ROD12131 by TMHMM2.0 at aa 5-27, 59-81, 88-110, 141-163, FT 184-206 and 240-262" FT misc_feature complement(1315633..1315665) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature complement(1315663..1315749) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT /inference="protein motif:Prosite:PS00402" FT misc_feature complement(1316029..1316061) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1316249..1317385) FT /transl_table=11 FT /gene="potA" FT /locus_tag="ROD_12141" FT /product="spermidine/putrescine ABC transporter, FT ATP-binding protein" FT /db_xref="GOA:D2TUC4" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR005893" FT /db_xref="InterPro:IPR008995" FT /db_xref="InterPro:IPR013611" FT /db_xref="InterPro:IPR017871" FT /db_xref="InterPro:IPR017879" FT /db_xref="UniProtKB/TrEMBL:D2TUC4" FT /protein_id="CBG87977.1" FT /translation="MGQSKKLNKQPRSLSPLVLLSGISKSFDGKEVISQLDLTINNGEF FT LTLLGPSGCGKTTVLRLIAGLETVDTGHIKLDNQDITHVPAENRYVNTVFQSYALFPHM FT TVFENVAFGLRMQKTPAADIAPRVTEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV FT NKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMR FT DGRIEQDGTPREIYEEPKNLFVAGFIGEINMFNATVIERLDAQRVRANVEGRECNIYVN FT FAVEPGQKLHVLLRPEDLRVEEINDDKPIEGLIGYVRERNYKGMTLESVVELENGKMVM FT VSEFFNEDDPDFDHSLDQKMAVNWVESWEVVLADEEHK" FT misc_feature complement(1316270..1316512) FT /gene="potA" FT /locus_tag="ROD_12141" FT /note="HMMPfam hit to PF08402, Transport-associated OB, FT type 2, score 3.3e-07" FT /inference="protein motif:PFAM:PF08402" FT misc_feature complement(1316714..1317259) FT /gene="potA" FT /locus_tag="ROD_12141" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 3.3e-66" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(1316900..1316944) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(1317215..1317238) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 1317614..1318840 FT /transl_table=11 FT /gene="pepT" FT /locus_tag="ROD_12151" FT /product="peptidase T" FT /EC_number="3.4.11.4" FT /db_xref="GOA:D2TUC5" FT /db_xref="InterPro:IPR001261" FT /db_xref="InterPro:IPR002933" FT /db_xref="InterPro:IPR010161" FT /db_xref="InterPro:IPR011650" FT /db_xref="UniProtKB/TrEMBL:D2TUC5" FT /protein_id="CBG87978.1" FT /translation="MDKLLERFLHYVSLDTQSKAGVRQVPSTEGQWKLLHLLKQQLEEM FT ELVNVTLSDKGTLMATLPANVPGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIA FT LGIGDEVLSPVIFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLKEKNIPHG FT DIRVAFTPDEEVGKGAKHFDVAAFGAQWAYTVDGGGVGELEFENFNAASVNIKIVGNNV FT HPGTAKGVMVNALSLAARIHAEVPADESPEATEGYEGFYHLASMKGTVDRADMHYIIRD FT FDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILAIAQQAM FT RDCDIEPDMKPIRGSTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVR FT IAELTAKQP" FT misc_feature 1317830..1317859 FT /note="PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family FT signature 1." FT /inference="protein motif:Prosite:PS00758" FT misc_feature 1318025..1318141 FT /note="PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family FT signature 2." FT /inference="protein motif:Prosite:PS00759" FT misc_feature 1318028..1318822 FT /gene="pepT" FT /locus_tag="ROD_12151" FT /note="HMMPfam hit to PF01546, Peptidase M20, score FT 2.9e-17" FT /inference="protein motif:PFAM:PF01546" FT misc_feature 1318226..1318540 FT /gene="pepT" FT /locus_tag="ROD_12151" FT /note="HMMPfam hit to PF07687, Peptidase M20, dimerisation, FT score 1.6e-26" FT /inference="protein motif:PFAM:PF07687" FT repeat_region 1318882..1320176 FT /note="Insertion sequence ISCro4. No inverted or direct FT repeats apparent. 1 of 13 100% identical ISCro4 elements in FT CR chromosome" FT CDS 1319087..1320067 FT /transl_table=11 FT /locus_tag="ROD_12161" FT /product="ISCro4 transposase" FT /db_xref="GOA:D2TGM5" FT /db_xref="InterPro:IPR002525" FT /db_xref="InterPro:IPR003346" FT /db_xref="InterPro:IPR003583" FT /db_xref="UniProtKB/TrEMBL:D2TGM5" FT /protein_id="CBG87979.1" FT /translation="MEQELHFIGIDVSKAKLDVDVLRPDGRHRSKKFANTPKGHDELLR FT WLSGHRVAPAHICMEATSTYMEDVAAHLSDAGYTVSVINPALGKAFAQSEGLRSKTDAV FT DARMLAEFCRQKRPPAWEAPHPVERALRALVLRHQSLTDMHTQELNRLETAREVQRPSI FT DAHLLWLHAELKRIEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYTGLKERF FT THARQFAAFAGLTPRRYESGSSVNRASRMSKAGHASLRRALYMPAMVAVSKTEWGRAFR FT DRLAGNGKKGKVIIGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA" FT misc_feature 1319303..1319593 FT /locus_tag="ROD_12161" FT /note="HMMPfam hit to PF01548, Transposase, FT IS111A/IS1328/IS1533, score 1.2e-17" FT /inference="protein motif:PFAM:PF01548" FT misc_feature 1319672..1319938 FT /locus_tag="ROD_12161" FT /note="HMMPfam hit to PF02371, Transposase, FT IS116/IS110/IS902, score 1.2e-27" FT /inference="protein motif:PFAM:PF02371" FT CDS complement(1320238..1321359) FT /transl_table=11 FT /locus_tag="ROD_12171" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR003347" FT /db_xref="InterPro:IPR013109" FT /db_xref="InterPro:IPR014710" FT /db_xref="InterPro:IPR022777" FT /db_xref="UniProtKB/TrEMBL:D2TUC7" FT /protein_id="CBG87980.1" FT /translation="MEYQLPLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAM FT ESEVDSRLVSHQDGKWQVSHGPFESYDHLGESNWSLLVQAVNHWHEPTAALMRPFRALP FT DWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKQQMKQHCPHPDLLQVD FT PFEAIIDEELEPGDILYIPPGFPHAGYALENAMNYSVGFRAPNTRELISGFADFVLQRE FT LGSTYYSDPDLPPREHPADVLPQEMDKLRAMMLDLINQPEHFRQWFGEFISQSRHELDI FT APPEPPYQPDEIYDALKQGDVLVRLGGLRVLRIGDEVYANGEKIDSPHRPALEALASHI FT VLTGENFGDALEDPSFLAMLAALVNSGYWFFEG" FT misc_feature complement(1320430..1321335) FT /locus_tag="ROD_12171" FT /note="HMMPfam hit to PF08007, Cupin 4, score 3e-154" FT /inference="protein motif:PFAM:PF08007" FT CDS complement(1321453..1322913) FT /transl_table=11 FT /gene="phoQ" FT /locus_tag="ROD_12181" FT /product="two-component sensor kinase" FT /db_xref="GOA:D2TUC8" FT /db_xref="InterPro:IPR003594" FT /db_xref="InterPro:IPR003660" FT /db_xref="InterPro:IPR003661" FT /db_xref="InterPro:IPR004358" FT /db_xref="InterPro:IPR005467" FT /db_xref="InterPro:IPR015014" FT /db_xref="UniProtKB/TrEMBL:D2TUC8" FT /protein_id="CBG87981.1" FT /translation="MNKLLRHLFPLSLRLRFLLGTAGVVLVLSLAYGAVALVGYSVSFD FT KTTFRLLRGESNLFYTLSKWEKQQIHVELPENLDMQSPTIALIYNENGKLLWAQRNVPW FT LVKLIQPDWLKSNGFHEIEADIDATSTLLNDDHTIQEQLKEVREDDDDAEMTHSVAVNV FT YPATARMPQLTIVVVDTIPVELKRSYMVWSWFIYVLAANLLLVIPLLWVAAWWSLRPIE FT ALAREVRELEEHNREQLNPETTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKT FT PLAVLQSTLRSMRSEKLSVSEAEPVMLEQISRISQQIGYYLHRANMRGGMLLSRELHPV FT APLLDNLTSALNKVYQRKGVTINLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVE FT ISARQTDDHLYIVVEDDGPGIPQSMRDLVFDRGQRVDTLRPGQGVGLAVAREIAEQYDG FT RIIAGDSLLGGARMEVIFGRQQPGQKDG" FT misc_feature complement(1321477..1321794) FT /gene="phoQ" FT /locus_tag="ROD_12181" FT /note="HMMPfam hit to PF02518, ATP-binding region, FT ATPase-like, score 3.9e-30" FT /inference="protein motif:PFAM:PF02518" FT misc_feature complement(1321924..1322115) FT /gene="phoQ" FT /locus_tag="ROD_12181" FT /note="HMMPfam hit to PF00512, Histidine kinase A, FT N-terminal, score 0.00042" FT /inference="protein motif:PFAM:PF00512" FT misc_feature complement(1322125..1322331) FT /gene="phoQ" FT /locus_tag="ROD_12181" FT /note="HMMPfam hit to PF00672, Histidine kinase, HAMP FT region, score 2.6e-08" FT /inference="protein motif:PFAM:PF00672" FT misc_feature complement(join(1322266..1322334,1322788..1322856)) FT /gene="phoQ" FT /locus_tag="ROD_12181" FT /note="2 probable transmembrane helices predicted for FT ROD12181 by TMHMM2.0 at aa 20-42 and 194-216" FT misc_feature complement(1322344..1322886) FT /gene="phoQ" FT /locus_tag="ROD_12181" FT /note="HMMPfam hit to PF08918, PhoQ Sensor, score 3.2e-122" FT /inference="protein motif:PFAM:PF08918" FT sig_peptide complement(1322815..1322913) FT /gene="phoQ" FT /locus_tag="ROD_12181" FT /note="Signal peptide predicted for ROD12181 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.668 between residues 33 and 34" FT CDS complement(1322913..1323584) FT /transl_table=11 FT /gene="phoP" FT /locus_tag="ROD_12191" FT /product="two-component response regulator" FT /db_xref="GOA:D2TUC9" FT /db_xref="InterPro:IPR001789" FT /db_xref="InterPro:IPR001867" FT /db_xref="InterPro:IPR011006" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TUC9" FT /protein_id="CBG87982.1" FT /translation="MRVLVVEDNALLRHHLKVQLQDAGHQVDDAEDAKEADYYLNEHLP FT DIAIVDLGLPDEDGLSLIRRWRGNDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFH FT IEEVVARMQALMRRNSGHASQIISIPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIR FT NNGKVVSKDALMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPDDVITTVRGQGYLFEL FT R" FT misc_feature complement(1322925..1323155) FT /gene="phoP" FT /locus_tag="ROD_12191" FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C-terminal, score 8.7e-17" FT /inference="protein motif:PFAM:PF00486" FT misc_feature complement(1323246..1323584) FT /gene="phoP" FT /locus_tag="ROD_12191" FT /note="HMMPfam hit to PF00072, Response regulator receiver, FT score 1.8e-31" FT /inference="protein motif:PFAM:PF00072" FT repeat_region complement(1323741..1325112) FT /note="Insertion sequence ISCro5. Has 13 bp perfect, FT subterminal inverted repeats but no direct repeats. 1 of 5 FT 100% identical ISCro5 elements in CR chromosome, ISCro5 FT includes 7 bp 5' and 3 bp 3' outside of the inverted FT repeats, common to the IS1111 subgroup of the IS110 family. FT Each IS element is flanked by the same 4 bp sequence 5' and FT 7 bp sequence 3' which likely represents its target FT sequence" FT repeat_region 1323744..1323756 FT /note="13 bp subterminal inverted repeat of ISCro5" FT CDS complement(1324018..1325028) FT /transl_table=11 FT /locus_tag="ROD_12201" FT /product="ISCro5 transposase" FT /db_xref="GOA:D2THE0" FT /db_xref="InterPro:IPR002525" FT /db_xref="InterPro:IPR003346" FT /db_xref="InterPro:IPR003583" FT /db_xref="UniProtKB/TrEMBL:D2THE0" FT /protein_id="CBG87983.1" FT /translation="MNIKRIGLDLAKLVFQLHGVDHHERVVLRKTLRRSQMLVFFARLE FT PCLIGIEACGSSHYWARELTRLGHSVRIIPPRFVKPYLKGNKNDANDAEAICEAVSRPG FT MRYVAVKSEAQQSMQAEHRVRARLLRDRTALSNEIRGMLGEFGLVLPVGLAALRRALPE FT ILSQQEQWDNRFIRLLCELAEELQILDDRLARYDRRLKQLAQDDDRIRRLQEISGIGPV FT TASALVAAVGNARQFKNGREMAAWLGLVPGQHSSGGKNRLGHISKRGDSYLRTLLIHGA FT RAVLNACGNKEDRRSQWLQSVAERRNRNVATVAMANKNARIAWAVLSREEEYRVM" FT misc_feature complement(1324135..1324398) FT /locus_tag="ROD_12201" FT /note="HMMPfam hit to PF02371, Transposase, FT IS116/IS110/IS902, score 2.7e-31" FT /inference="protein motif:PFAM:PF02371" FT repeat_region complement(1325093..1325105) FT /note="13 bp subterminal inverted repeat of ISCro5" FT CDS complement(1325128..1326498) FT /transl_table=11 FT /gene="purB" FT /locus_tag="ROD_12211" FT /product="adenylosuccinate lyase" FT /EC_number="4.3.2.2" FT /db_xref="GOA:D2TUD1" FT /db_xref="InterPro:IPR000362" FT /db_xref="InterPro:IPR004769" FT /db_xref="InterPro:IPR008948" FT /db_xref="InterPro:IPR013539" FT /db_xref="InterPro:IPR020557" FT /db_xref="InterPro:IPR022761" FT /db_xref="InterPro:IPR024083" FT /db_xref="UniProtKB/TrEMBL:D2TUD1" FT /protein_id="CBG87984.1" FT /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQ FT KLAAHAAIKEVPAFAADANGFLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKEKV FT ADIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRKMIDAVKDLSVQYRD FT IPLLSRTHGQPATPSTMGKEMANVAYRMERQFRQLNQVEILGKINGAVGNYNAHIAAYP FT EVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIAL FT NHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDS FT TVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDRLLDELDHNWEVLAEPIQTVMRRYGIE FT KPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKTRLKAMTPANYIGRAVTMVDELK" FT misc_feature complement(1325164..1325508) FT /gene="purB" FT /locus_tag="ROD_12211" FT /note="HMMPfam hit to PF08328, Adenylosuccinate lyase FT C-terminal, score 2.6e-90" FT /inference="protein motif:PFAM:PF08328" FT misc_feature complement(1325536..1326459) FT /gene="purB" FT /locus_tag="ROD_12211" FT /note="HMMPfam hit to PF00206, Fumarate lyase, score FT 4.1e-111" FT /inference="protein motif:PFAM:PF00206" FT misc_feature complement(1325590..1325619) FT /note="PS00163 Fumarate lyases signature." FT /inference="protein motif:Prosite:PS00163" FT CDS complement(1326502..1327143) FT /transl_table=11 FT /locus_tag="ROD_12221" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TUD2" FT /db_xref="InterPro:IPR007451" FT /db_xref="UniProtKB/TrEMBL:D2TUD2" FT /protein_id="CBG87985.1" FT /translation="MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSVID FT MNPSSTLGVFGGSEANLRLGLETILAVLNASSRQGLNAELTRYTLSLMVLERKLSAARG FT ALDTLGDRINGLQRQLEHFDLQSETLMSAMAGIYVDVISPLGPRIQVTGSPAVLQSPQV FT QAKVRASLLAGIRAAVLWQQVGGGRLQLMFSRNRLATQAKQILAHLTPEL" FT misc_feature complement(1326523..1327140) FT /locus_tag="ROD_12221" FT /note="HMMPfam hit to PF04356, Protein of unknown function FT DUF489, score 1.1e-139" FT /inference="protein motif:PFAM:PF04356" FT CDS complement(1327178..1328284) FT /transl_table=11 FT /gene="trmU" FT /locus_tag="ROD_12231" FT /product="tRNA FT (5-methylaminomethyl-2-thiouridylate)-methyltransferase" FT /EC_number="2.1.1.61" FT /db_xref="GOA:D2TUD3" FT /db_xref="InterPro:IPR004506" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR023382" FT /db_xref="UniProtKB/TrEMBL:D2TUD3" FT /protein_id="CBG87986.1" FT /translation="MSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG FT EEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNK FT EIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDGNKDQSYFLYTLGHEQI FT AQSLFPVGELSKPQVRKIAEDLELVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIV FT TVDGDEIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILIVAQGHDHPR FT LMSVGLIAQQLHWVDRLPFTGTMRCTVKTRYRQTDIPCTVKALDNDRIEVIFDEPVAAV FT TPGQSAVFYNGEVCLGGGIIEQRLPLPA" FT misc_feature complement(1327205..1328269) FT /gene="trmU" FT /locus_tag="ROD_12231" FT /note="HMMPfam hit to PF03054, tRNA FT (5-methylaminomethyl-2-thiouridylate)-methyltransferase, FT score 6.6e-235" FT /inference="protein motif:PFAM:PF03054" FT misc_feature complement(1327211..1327246) FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT /inference="protein motif:Prosite:PS00070" FT misc_feature complement(1327376..1327393) FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT /inference="protein motif:Prosite:PS00343" FT CDS complement(1328339..1328800) FT /transl_table=11 FT /locus_tag="ROD_12241" FT /product="putative NUDIX-family hydrolase" FT /db_xref="GOA:D2TUD4" FT /db_xref="InterPro:IPR000086" FT /db_xref="InterPro:IPR015797" FT /db_xref="InterPro:IPR020084" FT /db_xref="InterPro:IPR020476" FT /db_xref="UniProtKB/TrEMBL:D2TUD4" FT /protein_id="CBG87987.1" FT /translation="MFKPHVTVACIVHAEGKFLVVEETINGKALWNQPAGHLEADETLA FT QAAARELWEETGIHAQPQHFIRMHQWIAPDKTPFLRFLFAIELANMCDTEPHDSDIDCC FT RWVSAEEILAAPNLRSPLVAESIRSYQRGERYPLALIGEFNWPFTEGVN" FT misc_feature complement(1328402..1328791) FT /locus_tag="ROD_12241" FT /note="HMMPfam hit to PF00293, NUDIX hydrolase, core, score FT 2.9e-30" FT /inference="protein motif:PFAM:PF00293" FT misc_feature complement(1328636..1328695) FT /note="PS00893 mutT domain signature." FT /inference="protein motif:Prosite:PS00893" FT CDS complement(1328811..1329467) FT /transl_table=11 FT /gene="rluE" FT /locus_tag="ROD_12251" FT /product="ribosomal large subunit pseudouridine synthase E FT (rRNA pseudouridylate synthase E)" FT /EC_number="5.4.99.-" FT /db_xref="GOA:D2TUD5" FT /db_xref="InterPro:IPR000748" FT /db_xref="InterPro:IPR006145" FT /db_xref="InterPro:IPR018496" FT /db_xref="InterPro:IPR020103" FT /db_xref="UniProtKB/TrEMBL:D2TUD5" FT /protein_id="CBG87988.1" FT /translation="MRQLISSENTMQKTSFRNHRVERFSQRQVTKRRRENQPKRVVLFN FT KPYDVLPQFTDEAGRRTLKDFIPVQGVYAAGRLDRDSEGLLVLTNDGALQARLTQPGKR FT TGKIYFVQVEGDPTAEALNALRNGVTLNDGPTLPAGVELVAEPDWLWPRNPPIRERKTI FT PTRWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYTLDNLANGEWRDITGE" FT misc_feature complement(1328910..1329350) FT /gene="rluE" FT /locus_tag="ROD_12251" FT /note="HMMPfam hit to PF00849, Pseudouridine synthase, FT score 3.5e-20" FT /inference="protein motif:PFAM:PF00849" FT misc_feature complement(1329198..1329242) FT /note="PS01149 Rsu family of pseudouridine synthase FT signature." FT /inference="protein motif:Prosite:PS01149" FT CDS 1329639..1330889 FT /transl_table=11 FT /gene="icd" FT /locus_tag="ROD_12261" FT /product="isocitrate dehydrogenase [NADP]" FT /EC_number="1.1.1.42" FT /db_xref="GOA:D2TUD6" FT /db_xref="InterPro:IPR001804" FT /db_xref="InterPro:IPR004439" FT /db_xref="InterPro:IPR019818" FT /db_xref="InterPro:IPR024084" FT /db_xref="UniProtKB/TrEMBL:D2TUD6" FT /protein_id="CBG87989.1" FT /translation="MESKVVVPAEGKKITLQNGKLNVPENPIIPFIEGDGIGVDVTPAM FT LKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPPETLDLIREYRVAIKGPLT FT TPVGGGIRSLNVALRQELDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGI FT EWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAITNDR FT DSVTLVHKGNIMKFTEGAFKDWGYQLARDEFGGELIDGGPWVKINNPNTGKEIVIKDVI FT ADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHG FT TAPKYAGQDKVNPGSIILSAEMMLRHMQWFEAADLIVKGMEGAIAAKTVTYDFERLMEG FT AKLLKCSEFGDAIIANM" FT misc_feature 1329720..1330874 FT /gene="icd" FT /locus_tag="ROD_12261" FT /note="HMMPfam hit to PF00180, Isocitrate/isopropylmalate FT dehydrogenase, score 9.3e-166" FT /inference="protein motif:PFAM:PF00180" FT misc_feature 1330545..1330604 FT /note="PS00470 Isocitrate and isopropylmalate FT dehydrogenases signature." FT /inference="protein motif:Prosite:PS00470" FT CDS 1331096..1331299 FT /transl_table=11 FT /locus_tag="ROD_12271" FT /product="Putative exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TUD7" FT /protein_id="CBG87990.1" FT /translation="MSNPGPLVFFLLMIFLVIPGALLTLLFIWQAVYKKNKKGLRHVFS FT ILAWLSGAFLFFIVVWGYGSFM" FT misc_feature join(1331114..1331182,1331225..1331293) FT /locus_tag="ROD_12271" FT /note="2 probable transmembrane helices predicted for FT ROD12271 by TMHMM2.0 at aa 7-29 and 44-66" FT CDS complement(1331460..1332017) FT /transl_table=11 FT /locus_tag="ROD_12281" FT /product="hypothetical protein" FT /note="Note the database hits to enterotoxins" FT /db_xref="GOA:D2TUD8" FT /db_xref="InterPro:IPR003898" FT /db_xref="UniProtKB/TrEMBL:D2TUD8" FT /protein_id="CBG87991.1" FT /translation="MLTQYDIKRNRAPSKWRTFKRLLSRKSLPSFVYRLDGRDPQVIAQ FT TGFQPWNPQGNINIFEHVKGVLDTGNAAKLQSQYVSTSSFQAYSRFGDGRMGEMLTRSR FT IYKIDTHIALTTGEFFDVNDMFDRFSQTNNFRAQREWSKLGGIPANAVIGFMSGLDFFN FT NVILVPAPQEDELRWEPMPARI" FT CDS complement(1332275..1333036) FT /transl_table=11 FT /locus_tag="ROD_12291" FT /product="putative membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TUD9" FT /protein_id="CBG87992.1" FT /translation="MGTAIFMVLMVCGYWYTSRDLSTRFKIKRSFGWDVYFLVALYGCV FT FVLQGVIATGLLWLLLLALSAADNTYHFTSQHYANWQVEFMNWSFLGIQAPVVVMLAFA FT ILFCLYRSNWAGSARLDGEGRKQLYKRLARSSGIEQLLYQCMEEGELALVTLKSRRIYV FT GMIHTATLEYEKTANIVLIPMLSGYRDGKKMDLCIEHNYSRWYAEHDITLDSEPKSAMA FT FRKVIMLDQIESLSLFDPASASALSLAQRSE" FT misc_feature complement(join(1332707..1332775,1332866..1332934)) FT /locus_tag="ROD_12291" FT /note="2 probable transmembrane helices predicted for FT ROD12291 by TMHMM2.0 at aa 35-57 and 88-110" FT CDS complement(1333038..1333235) FT /transl_table=11 FT /locus_tag="ROD_12301" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TUE0" FT /protein_id="CBG87993.1" FT /translation="MRRVFMSIFSSPESLLQVMSQQEIIEAVEDGDRIIIDQDGNASVN FT FKSREVRQDFLRHVNALKRA" FT tRNA 1333476..1333547 FT /locus_tag="ROD_t20" FT /product="transfer RNA" FT /note="tRNA with undetermined isotype anticodon unknown, FT Cove score 23.20" FT CDS complement(1333645..1333983) FT /transl_table=11 FT /locus_tag="ROD_12311" FT /product="putative exported protein" FT /db_xref="InterPro:IPR009923" FT /db_xref="InterPro:IPR010854" FT /db_xref="UniProtKB/TrEMBL:D2TUE1" FT /protein_id="CBG87994.1" FT /translation="MSELSLTSQLNKDALDMKKIAFATTLLVSAFSFSAIAADQVSKEE FT VDHFKLEKVGTVNVSQSGGAISSPSDLREELSKLTDEKGGKYYHIIAARQHGPNFEAVA FT DIYNDAKK" FT misc_feature complement(1333660..1333935) FT /locus_tag="ROD_12311" FT /note="HMMPfam hit to PF07338, Protein of unknown function FT DUF1471, score 1.4e-25" FT /inference="protein motif:PFAM:PF07338" FT sig_peptide complement(1333873..1333983) FT /locus_tag="ROD_12311" FT /note="Signal peptide predicted for ROD12311 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 37 and 38" FT misc_feature complement(1333873..1333926) FT /locus_tag="ROD_12311" FT /note="1 probable transmembrane helix predicted for FT ROD12311 by TMHMM2.0 at aa 20-37" FT CDS complement(1334070..1334957) FT /transl_table=11 FT /locus_tag="ROD_12321" FT /product="Beta-lactamase" FT /db_xref="GOA:D2TUE2" FT /db_xref="InterPro:IPR000871" FT /db_xref="InterPro:IPR001466" FT /db_xref="InterPro:IPR012338" FT /db_xref="InterPro:IPR023650" FT /db_xref="UniProtKB/TrEMBL:D2TUE2" FT /protein_id="CBG87995.1" FT /translation="MFKNRFRRTVLIAATMMPFVVGSASLWAQAQPDAQQVQQKLAALE FT KQSGGRLGVALINTADNSQLLYRGDERFAMCSTSKVMVAAAVLKQSETRPAILQQKIPI FT KKADLTNWNPVTEKYVGKEMTLAELSAATLQYSDNTAMNKLIAHLGGPGKVTAFARSTG FT DTTFRLDRQEPELNTAIPGDERDTSSPRAMADSLRNLTLGDALADTQRAQLVAWLKGNT FT TGGQSIRAGVPAHWVVGDKTGAGEYGTTNDIAIIWPENRPPLILVTYFTQRQQDAKWRK FT DVLAAAAKIVTEGR" FT misc_feature complement(1334091..1334837) FT /locus_tag="ROD_12321" FT /note="HMMPfam hit to PF00144, Beta-lactamase, score FT 1.3e-53" FT /inference="protein motif:PFAM:PF00144" FT misc_feature complement(1334694..1334741) FT /note="PS00146 Beta-lactamase class-A active site." FT /inference="protein motif:Prosite:PS00146" FT sig_peptide complement(1334874..1334957) FT /locus_tag="ROD_12321" FT /note="Signal peptide predicted for ROD12321 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.980 between residues 28 and 29" FT CDS 1335060..1335296 FT /transl_table=11 FT /locus_tag="ROD_12331" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TUE3" FT /protein_id="CBG87996.1" FT /translation="MISGSRLSALCVCLASEKNLSCTKEKLISIRYAFFSLSIRDALTF FT YARLARRGQINKTALLPGEVRHSVQTYLLPLIK" FT CDS 1335307..1335633 FT /transl_table=11 FT /locus_tag="ROD_12341" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TUE4" FT /protein_id="CBG87997.1" FT /translation="MQQEYRECIEMCYACAAACDYCAASCLKEQDVDMMKNCIRLDTQC FT AAMCRLAAQFMALGSDYASQICRLCVELCKACAQECARHEHQHCQDCARACNACADACL FT KMAA" FT misc_feature 1335307..1335375 FT /locus_tag="ROD_12341" FT /note="HMMPfam hit to PF03860, Protein of unknown function FT DUF326, score 0.11" FT /inference="protein motif:PFAM:PF03860" FT misc_feature 1335397..1335465 FT /locus_tag="ROD_12341" FT /note="HMMPfam hit to PF03860, Protein of unknown function FT DUF326, score 0.0013" FT /inference="protein motif:PFAM:PF03860" FT misc_feature 1335493..1335561 FT /locus_tag="ROD_12341" FT /note="HMMPfam hit to PF03860, Protein of unknown function FT DUF326, score 0.085" FT /inference="protein motif:PFAM:PF03860" FT misc_feature 1335562..1335627 FT /locus_tag="ROD_12341" FT /note="HMMPfam hit to PF03860, Protein of unknown function FT DUF326, score 0.052" FT /inference="protein motif:PFAM:PF03860" FT CDS 1335769..1336419 FT /transl_table=11 FT /gene="yodA" FT /locus_tag="ROD_12351" FT /product="putative metal-binding protein" FT /note="putative T2SS substrate" FT /db_xref="GOA:D2TUE5" FT /db_xref="InterPro:IPR011038" FT /db_xref="InterPro:IPR012674" FT /db_xref="InterPro:IPR015304" FT /db_xref="UniProtKB/TrEMBL:D2TUE5" FT /protein_id="CBG87998.1" FT /translation="MVTNLKKLSISLGMLLASGYAFAHGHHSHGAPLTDVEQKAAEGIF FT DDKNVQDRALSDWEGMWQSVYPYLVSGELDPVFKQKAEKDKRKTAEEIKAYYRKGYATE FT VDTIGIENGVMEFHTGSQVASCQYAYAGHRILTYASGKKGVRYLFECKEANSRAPKYVQ FT FSDHIIAPRKSSHFHIFMGNSSQQALLEEMDNWPTYYPYQLRAQAVVDEMLHH" FT sig_peptide 1335769..1335837 FT /gene="yodA" FT /locus_tag="ROD_12351" FT /note="Signal peptide predicted for ROD12351 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.983 between residues 23 and 24" FT misc_feature 1335871..1336416 FT /gene="yodA" FT /locus_tag="ROD_12351" FT /note="HMMPfam hit to PF09223, YodA, score 3.5e-122" FT /inference="protein motif:PFAM:PF09223" FT CDS 1336626..1337048 FT /transl_table=11 FT /gene="umuD" FT /locus_tag="ROD_12361" FT /product="SOS mutagenesis and repair protein" FT /EC_number="3.4.21.-" FT /db_xref="GOA:D2TUE6" FT /db_xref="InterPro:IPR006197" FT /db_xref="InterPro:IPR011056" FT /db_xref="InterPro:IPR015927" FT /db_xref="InterPro:IPR019759" FT /db_xref="UniProtKB/TrEMBL:D2TUE6" FT /protein_id="CBG87999.1" FT /translation="MRMYHKPVDSRQIVTIPLFADIVQCGFPSPAQDYVEQRINLNELL FT IQHPSATFFVRAAGDSMIDGGIGDGDLLVVDSALRPTHGDIVIASVEGEFTVKQLQLRP FT VVQLNPMNSAWSPIKVSSEASLDIFGVVTHIIKTTK" FT misc_feature 1336791..1336994 FT /gene="umuD" FT /locus_tag="ROD_12361" FT /note="HMMPfam hit to PF00717, Peptidase S24, S26A and FT S26B, C-terminal, score 1.7e-14" FT /inference="protein motif:PFAM:PF00717" FT CDS complement(1337130..1338431) FT /transl_table=11 FT /locus_tag="ROD_12371" FT /product="putative transmembrane transporter" FT /db_xref="GOA:D2TUE7" FT /db_xref="InterPro:IPR004680" FT /db_xref="InterPro:IPR014738" FT /db_xref="UniProtKB/TrEMBL:D2TUE7" FT /protein_id="CBG88000.1" FT /translation="MPIMLITGIIMFIILTWCLLKNIFPPSILFILLPTIAALICGFGF FT KELGEYVAQGLKSVVGTATLVAFSAMFFTLMKEAGVFDVIVRFILRFIKASTFSVLLAT FT LVIASICSLDGNAYATLLVTVPALLPIYEKMNISKKTLLLLITVGVGVTGITPWGGSLN FT RAIAVTHLDILDVYYRLIPLQGILFALGVILCWFMARIENRSGSGISPEAFRIMRADML FT TCKTDHNPWLLKLNFALVIATIVILVSGLVAGNFLFMIAFSLAVIVNYPDTQKAQQKIK FT DYALTIFPVIVIFLTIGVFVGILQNTGIIKVLVNEIAEIFPASLGPYLYLILAAFSVPV FT VILIGSDAFYFALLPLAVGLGQRFGVSPLHVTIAMLITEQIGLLLSPVIPATHLGLSLL FT NLRVDEHIKHSLVKVWTMSVCALVAALITGIIPV" FT misc_feature complement(join(1337136..1337204,1337223..1337291, FT 1337334..1337387,1337406..1337474,1337517..1337585, FT 1337622..1337723,1337838..1337906,1337943..1338011, FT 1338102..1338170,1338204..1338257,1338285..1338353, FT 1338372..1338422)) FT /locus_tag="ROD_12371" FT /note="12 probable transmembrane helices predicted for FT ROD12371 by TMHMM2.0 at aa 4-20, 27-49, 59-76, 88-110, FT 141-163, 176-198, 237-270, 283-305, 320-342, 349-366, FT 381-403 and 410-432" FT misc_feature complement(1337295..1338413) FT /locus_tag="ROD_12371" FT /note="HMMPfam hit to PF03600, Divalent ion symporter, FT score 2.4e-58" FT /inference="protein motif:PFAM:PF03600" FT CDS complement(1338510..1339148) FT /transl_table=11 FT /locus_tag="ROD_12381" FT /product="putative sugar aldolase" FT /db_xref="GOA:D2TUE8" FT /db_xref="InterPro:IPR001303" FT /db_xref="UniProtKB/TrEMBL:D2TUE8" FT /protein_id="CBG88001.1" FT /translation="MSEKQLREDLVRYARSMFERGYSSGGAGNISLKLSDGNILATPTN FT SSFGDLNADELSKVTMAGELLSGQKASKEVLMHLAMYRQRPQCGAIVHLHSPWLTALSC FT LPGIDPENALPPITPYYVMRVGKLPVIPYIRPGSPRIAGEVEKLAAEHNAILLANHGPV FT ISGKDIREAVFNAEELEETAKLYFMLKPFGMNTLTRENVDELNATFHMK" FT misc_feature complement(1338543..1339127) FT /locus_tag="ROD_12381" FT /note="HMMPfam hit to PF00596, Class II aldolase/adducin, FT N-terminal, score 6.7e-56" FT /inference="protein motif:PFAM:PF00596" FT misc_feature complement(1338837..1338869) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1339141..1340403) FT /transl_table=11 FT /locus_tag="ROD_12391" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR010737" FT /db_xref="UniProtKB/TrEMBL:D2TUE9" FT /protein_id="CBG88002.1" FT /translation="MTTLGVIADDFTGATDIASFMVNAGWKVVLFNGIPNKAFDVGDMD FT AIVIALKSRSVPASEAVAMSLSASAWLKTQGCQRQLFKYCSTFDSTARGNIGPVTDALM FT KSLATPVTLICPAVPDNGRTILNGHLFVKGELLNESGMEHHPVTPMKHSSLKKLMEAQS FT VGLCGNITLDIVKNHPEKIASEIENKMANKARYLIFDVLDNHDLLTVAKATASFPLVTG FT AAGLGYAIAALDKQHVSSAKKVAISVGSKGPGVVLSGSCSAMTNQQVEFYKQRASSLAL FT DVEKIINEPAYLETVSAWVKSHSQDPTAPMVYATQPPQIIELIQKNYGAQVVSDKIESF FT FSSLAQSLAAAGFNKFIVAGGETSGAVTQGLNIDGMVIGESVAPGVPWTQVLNKQQWVI FT LKSGNFGNPDFFLKAQEYYHE" FT misc_feature complement(1339264..1339920) FT /locus_tag="ROD_12391" FT /note="HMMPfam hit to PF07005, Type III effector FT Hrp-dependent outers, score 2.2e-62" FT /inference="protein motif:PFAM:PF07005" FT CDS 1340726..1341796 FT /transl_table=11 FT /locus_tag="ROD_12401" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TUF0" FT /db_xref="InterPro:IPR001804" FT /db_xref="InterPro:IPR024084" FT /db_xref="UniProtKB/TrEMBL:D2TUF0" FT /protein_id="CBG88003.1" FT /translation="MRILVLPCDGIGPEITSAAVTVLNSLDKAYGLGFEFDYDDVGFKS FT LEKHGTTLRQETLDKAKTYDGIILGTQSHADYPAPEKGGRNVSAGFRIGLDLYANVRPA FT RTRPFLTSNMKEGKTMDLVIMREATEGFYPDRNMTRGWGEVMPSPDMALSTRKITRHCS FT ERIARKAFELAMQRKKKVTAIHKANSFHMTDGLFLEAVRTVAKEFPEVQLDDLLVDAST FT AHLVRNPERFDVLVATNFYGDIISDLASELSGSLGLAGSIMASDTHCCAQAQHGSAPDI FT QNQDKANPVSMILSAAMMLAWYAEKHNQPKFLKAADEISRAVDEVLENPETRTPDLGGT FT CGTKAFAEKVAAAIRA" FT misc_feature 1340729..1341775 FT /locus_tag="ROD_12401" FT /note="HMMPfam hit to PF00180, Isocitrate/isopropylmalate FT dehydrogenase, score 2.9e-90" FT /inference="protein motif:PFAM:PF00180" FT CDS 1341848..1342501 FT /transl_table=11 FT /locus_tag="ROD_12411" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR015942" FT /db_xref="UniProtKB/TrEMBL:D2TUF1" FT /protein_id="CBG88004.1" FT /translation="MSQRIVLIHATPLAVAPINNTFKQLWPDAEVSNLLDDALSVDREK FT ESALTPRLYRRIDELLHYALGIDAAAVLFTCSAFGAAIDASAQAQSVPVLKPNEAMFED FT ALALGTNIVMLATFAPAVKGMEEEFAQLATSRHSSARLNSYIVAGARDALNAGNADLHN FT QLIVEAAKQHQDADVILLAHFSMEIAYNQVNTAVASTVLSSPQSAVKKLRLLMS" FT CDS 1342534..1343412 FT /transl_table=11 FT /locus_tag="ROD_12421" FT /product="hypothetical protein" FT /db_xref="GOA:D2TUF2" FT /db_xref="InterPro:IPR006992" FT /db_xref="UniProtKB/TrEMBL:D2TUF2" FT /protein_id="CBG88005.1" FT /translation="MNNKKIAAGIKHTHVASLPDVELPANSCDCHHHIFDRRYPWAPDD FT KRNLPDATVNDFRQFKQWLGFKRHVLVQPSSYGTDNRCLIDALQTFGPDARGEAVVTDS FT VSDSELDRLSRAGVQGIRFNFGAGSATTPEMLLPLAARVAERGWHIQVHATADQLWALR FT PLLKRVPGRLVIDHFFRLPQPEPMAHPAWKLAWELIASGRCWVKLSALYHQSQRDDVSD FT MAEMIRYFLNEATERVVWGSDWPHPNLISAHKKMPDDALILANIFHWASNGQVRHKLFV FT KNPAELYGFNA" FT misc_feature 1342615..1343403 FT /locus_tag="ROD_12421" FT /note="HMMPfam hit to PF04909, Amidohydrolase 2, score FT 5.4e-41" FT /inference="protein motif:PFAM:PF04909" FT CDS 1343436..1344818 FT /transl_table=11 FT /locus_tag="ROD_12431" FT /product="Major Facilitator Superfamily transporter" FT /db_xref="GOA:D2TUF3" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TUF3" FT /protein_id="CBG88006.1" FT /translation="MKTLDSTASKKKPTHYRYMILLMVFLSIALNHGDRATFSIAGTDM FT VKAAGLDIVALGYLISTFTWAYVLGQYPGGWLLDRFGSKKVLVTGVFSWSFFVFLVGFS FT TSFDNVWVTRVMIFGFIFMMGLIEAPTLPANSRFLAAWFPAKERGKASGFTTAAQYFAL FT VVFLPLMGWFSYTYGWESVFWFMGGLGIFVSLIMNKVLADTPKVHPLVNNEELEYIQAG FT GGLTNMKVTKKGESKGTGYTRKLLTNRLALGVYMGQFFFTVLSYFFLTWFPVYLVHDRG FT MTILKAGFVASLPALCGCVGALSGGVLSDYMLSRGFSLSAARKTPIVIGMLLAVSMVIC FT NYVDSAWIVIAIMSLAFFGKGFGAMGWCVVSDFSPKEAVGLSGGLFNMIGNISGIFTPI FT IIAYIIKDTGSFNGALIFVGVCAFLNLCCYLFVAGKIQRLSFDKRDTHRDEPVTEESHV FT SR" FT misc_feature join(1343478..1343534,1343595..1343663,1343691..1343744, FT 1343763..1343831,1343958..1344026,1344183..1344251, FT 1344294..1344362,1344381..1344449,1344477..1344545, FT 1344582..1344650,1344678..1344737) FT /locus_tag="ROD_12431" FT /note="11 probable transmembrane helices predicted for FT ROD12431 by TMHMM2.0 at aa 15-33, 54-76, 86-103, 110-132, FT 175-197, 250-272, 287-309, 316-338, 348-370, 383-405 and FT 415-434" FT misc_feature 1343505..1344653 FT /locus_tag="ROD_12431" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 3.6e-52" FT /inference="protein motif:PFAM:PF07690" FT misc_feature 1344300..1344332 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 1344805..1345482 FT /transl_table=11 FT /locus_tag="ROD_12441" FT /product="hypothetical protein" FT /db_xref="GOA:D2TUF4" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:D2TUF4" FT /protein_id="CBG88007.1" FT /translation="MSAADTLRFAINLGNAVLARELADGKPAGITVGLASKIAAALGAV FT PQFKTYPTAGKVVDDAQNDAWDVAFLAVDPLREEVLQFTQPYIVIQGTVLVRESSPWQS FT VTQMDSAGVVINVGKGAAYDLYLTRQLKKASINRLSSSQAAIDAFLKGEGDMAAGIRQP FT LERAAAVHPGFRVLPDNFGQINQAICVPHGNEERYRLIAELLTEWQQDGSVQQLIDREL FT TAS" FT CDS 1345607..1348255 FT /transl_table=11 FT /locus_tag="ROD_12451" FT /product="putative aconitate hydratase" FT /db_xref="GOA:D2TUF5" FT /db_xref="InterPro:IPR000573" FT /db_xref="InterPro:IPR001030" FT /db_xref="InterPro:IPR015928" FT /db_xref="InterPro:IPR015931" FT /db_xref="InterPro:IPR015932" FT /db_xref="InterPro:IPR015934" FT /db_xref="InterPro:IPR015937" FT /db_xref="InterPro:IPR018136" FT /db_xref="UniProtKB/TrEMBL:D2TUF5" FT /protein_id="CBG88008.1" FT /translation="MTPLLPLKRFPLVVNNQRYDYLDLTQLLPSGQLQKIPFCLRVLLE FT NVARRSPHALTPFLRMLDGASDKGEVAFYPDRLMFHDTTCLPALADFAAMRDLTTELGG FT DATAINPRIPAVLTIDHSVIVESYASPSALEDNLRYDFRRNAERYRFIRWAEKSLNNFR FT VIPPGTGIIHLMNLEAIAEVVTVDEAAPVPLLHADCMIATDSHTPMINALGILGWGVGG FT LEGQAALVGEPVTLSFPDVIGISLSGALPHDVNDSDLALHITRLLREIGVVGKFVEFTG FT PALHAIPVESRATIANMAPEYGATVVYFPFDERSAEYVALTGRTEEKQSLIKAYMQAQH FT LWRSADSPQPEFSQLIEIDLTTIEPCMAGPVNPHQQIPLGQAAASFEETLNAQTRGLCW FT RHPAYGEPIRQGAVAIAAITSCTTTANPWLIVQAALFARNAAKAGLKPKPWVKTSFSPG FT SRAVTDYLGEAGLLSELEKVGFDVTGYGCMTCIGSSGALQPAMEELVNEGLQAVCVLSG FT NRNFPRRVNPSLGHGYLTSPALVIAWAIAGHMSHDMVNEPLGVDRNGSPVTMRDLMPAR FT DEVEMWLKRVVKREHYVKRRDIIWQGTPHWQQVEAPGSVHYPWEASSTYLRRPGYLERL FT PRDPATPLSLSGARPFLWLGDDVTTDHISPAGAIPPSSLAGQWLLDHHEDPADLNLYST FT RRSNHEVMVRGAFTNKALANRLLPSELRGGGGNAWDARHSHILPAYEAAQSWLKEGTPL FT VIFAGERYGAGSSRDWAAKAQALLGVKAVVAYSFERIHRTNLIGMGILPLHIDPEHAAH FT LPAMTGTEVIDFYGLENLQPGTMPLSMRISRHGALLQELPLTLTLDSQQELRYLQHGGI FT LPYVIQQTLKR" FT misc_feature 1345772..1347247 FT /locus_tag="ROD_12451" FT /note="HMMPfam hit to PF00330, Aconitase/3-isopropylmalate FT dehydratase large subunit, alpha/beta/alpha, score FT 6.8e-127" FT /inference="protein motif:PFAM:PF00330" FT misc_feature 1346837..1346869 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1347041..1347082 FT /note="PS01244 Aconitase family signature 2." FT /inference="protein motif:Prosite:PS01244" FT misc_feature 1347629..1348030 FT /locus_tag="ROD_12451" FT /note="HMMPfam hit to PF00694, Aconitase A/isopropylmalate FT dehydratase small subunit, swivel, score 7.1e-32" FT /inference="protein motif:PFAM:PF00694" FT CDS 1348258..1349193 FT /transl_table=11 FT /locus_tag="ROD_12461" FT /product="LysR-family transcriptional regulator" FT /db_xref="GOA:D2TUF6" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TUF6" FT /protein_id="CBG88009.1" FT /translation="MDTAMRFDLISLSIFVAVAEEQNLTRAARRKHTAVSAVSKRIAEL FT EQQVGTPLMLRMPRGIALTPAGHSLLYHARQVFHKLEKMEEELSDYAAGIRGHIRIYTI FT SAALMNHLPGVISNYLSLYPQTDIEIEEHTGLAVVQGLLAGEADVGFFSDWTPSAGIEF FT WPWQQDLLSVLVWPTHPLAERDELKFEDILYEKLIGSHRNSAVSYILERQARAYGKTLD FT VGLRVSSFISMAELVAQKLGIAVLPVNEVASSTLHGGVRLIPLSDAWARRELLVGVKNY FT AQTSPSVKALISSLLPSEKSIPPDLNATPL" FT misc_feature 1348282..1348461 FT /locus_tag="ROD_12461" FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT protein, LysR, score 1.1e-15" FT /inference="protein motif:PFAM:PF00126" FT misc_feature 1348321..1348386 FT /note="Predicted helix-turn-helix motif with score FT 1057.000, SD 2.79 at aa 22-43, sequence FT QNLTRAARRKHTAVSAVSKRIA" FT misc_feature 1348324..1348416 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT /inference="protein motif:Prosite:PS00044" FT misc_feature 1348531..1349157 FT /locus_tag="ROD_12461" FT /note="HMMPfam hit to PF03466, LysR, substrate-binding, FT score 2.5e-30" FT /inference="protein motif:PFAM:PF03466" FT CDS complement(1349224..1350324) FT /transl_table=11 FT /locus_tag="ROD_12471" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR011048" FT /db_xref="InterPro:IPR015943" FT /db_xref="InterPro:IPR019405" FT /db_xref="UniProtKB/TrEMBL:D2TUF7" FT /protein_id="CBG88010.1" FT /translation="MITYAYVGCRTSKWRGARGKGITVFRIADSGEWEQIQCIPSIQDN FT PSWLTLDAKRNRLYVLHGDGDRVAVFNRDPETGRLSLRNDQTTGPRHTNPDLEAARRNN FT PVSSALTPDMATLLIANHEGGNVAALPVNDDGLDKPAHFSCIEGHPATDDTLPTLSRPH FT EVVFLPGSDLFAVPVQGRKAGNGIDMIRLYRWAGTRAFLSDEVRLTPGSWPRHVDFHPN FT GKWLYGISELSNTVTVFDVDKDGGSLTVKQTIGTLPEGYNSRSDASEVEVHPDGRFLYA FT ANRGHDTIAVFHINPHDGSLNLAGWVPCGGKTPRFTTLSPDGAQFYSANEDSDTIQVFD FT VDAATGMLAKTDVVIPSASPTCICFA" FT CDS 1350625..1351368 FT /transl_table=11 FT /locus_tag="ROD_12481" FT /product="putative dehydrogenase" FT /db_xref="GOA:D2TUF8" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR002347" FT /db_xref="InterPro:IPR011283" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR020904" FT /db_xref="UniProtKB/TrEMBL:D2TUF8" FT /protein_id="CBG88011.1" FT /translation="MTQRIAYVTSGMGSLGTAICRRLAQDGFIVIAGCAPNSGRKASWL FT EDNKKLGFDFIASEGNVADWDSTVKAFEKIRNEVGEVDVLVNNSGTARNVLFRDMQPQE FT WQAVIDTNMNSLFNVTRQVVDSMMARGWGRIINISSLNAQIGTVGQVNYSTAKYAVRGF FT TRALAREVSARGVTVNTVSPGYLATSKLKTVTPVQVIDKIVQEIPLRRLGSPKEIASIC FT AWLASDESGYATGANFSVNGGMHMS" FT misc_feature 1350634..1351140 FT /locus_tag="ROD_12481" FT /note="HMMPfam hit to PF00106, Short-chain FT dehydrogenase/reductase SDR, score 8.7e-27" FT /inference="protein motif:PFAM:PF00106" FT misc_feature 1351042..1351128 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT /inference="protein motif:Prosite:PS00061" FT CDS 1351444..1352781 FT /transl_table=11 FT /locus_tag="ROD_12491" FT /product="putative transmembrane transporter" FT /db_xref="GOA:D2TUF9" FT /db_xref="InterPro:IPR004680" FT /db_xref="InterPro:IPR014738" FT /db_xref="UniProtKB/TrEMBL:D2TUF9" FT /protein_id="CBG88012.1" FT /translation="MLSLLGYGMIVVFMILIMTKKLSALTALTIIPIIFALIAGFGAEM FT GDMMIDGLKKVAPTAIMVIFAILYFCTMFDTGLFDPIIRFFLRIINGDPVKAVMCTALL FT AAMVSLDGDGSTTYMICVTAMLPLFKRIRLDPLALTCVVFLSGSVTNLLPWGGPLARVS FT ASLKVESSDLFIPLIPSMICGLVGVLVLSWYIGIRERRRLGKLSIQTNGHGSVIEEDAE FT SYLPAINEVNDELCRPKMFWLNAALTLALMASLVMELLPLSVLFMVAFAIALLINYPHL FT DAQRQRIAAHAPAALNQTSIFLAAGIFAGILSGTGMVTAMSSTLLDILPQSWGPYLAPI FT TALISLPGTFFMSNDAFYYGVLPVLAEAAKVYGIEPVEIGRASLVGQPVHLLSPLVAST FT YLLVGLAGVEFSDHQKYTFKWAFLLCMIFLASGLLLGLYPLYSVAG" FT misc_feature join(1351447..1351500,1351513..1351572,1351609..1351677, FT 1351762..1351830,1351849..1351917,1351960..1352028, FT 1352164..1352223,1352233..1352286,1352344..1352403, FT 1352461..1352529,1352701..1352769) FT /locus_tag="ROD_12491" FT /note="11 probable transmembrane helices predicted for FT ROD12491 by TMHMM2.0 at aa 2-19, 24-43, 56-78, 107-129, FT 136-158, 173-195, 241-260, 264-281, 301-320, 340-362 and FT 420-442" FT misc_feature 1351456..1352604 FT /locus_tag="ROD_12491" FT /note="HMMPfam hit to PF03600, Divalent ion symporter, FT score 3.1e-136" FT /inference="protein motif:PFAM:PF03600" FT CDS complement(1352826..1353713) FT /transl_table=11 FT /locus_tag="ROD_12501" FT /product="GntR-family transcriptional regulator" FT /db_xref="GOA:D2TUG0" FT /db_xref="InterPro:IPR000524" FT /db_xref="InterPro:IPR011711" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:D2TUG0" FT /protein_id="CBG88013.1" FT /translation="MKISALTERISQKIIALIDKGDIAPGSHLSVPKLAETFDVSRSPV FT REALVFLEQKGVLFQKVNRGFFVKEDYKPDVQQALSDELDLPEYYQMAEDWLQDKIDSE FT VTELFLMKRYNLTKSQLATVLARGISEGWVERKQGYGWRFLAVAKTKAALEQIFSFRMV FT IEPMAILEPTFNAPQEKINEIRRELEMLLENGIERLSPTQLQLAGYRFHETVISFSNNP FT FFEISLRNVNRMRRLMDYRIMDDRNRYYAEVKDHLRILSLIESGQRIEASYTMKQHLAV FT ALDNKKMRRISADS" FT misc_feature complement(1352871..1353248) FT /locus_tag="ROD_12501" FT /note="HMMPfam hit to PF07729, GntR, C-terminal, score FT 5.7e-06" FT /inference="protein motif:PFAM:PF07729" FT misc_feature complement(1353510..1353698) FT /locus_tag="ROD_12501" FT /note="HMMPfam hit to PF00392, Bacterial regulatory protein FT GntR, HTH, score 2.6e-20" FT /inference="protein motif:PFAM:PF00392" FT CDS complement(1353842..1355107) FT /transl_table=11 FT /gene="umuC" FT /locus_tag="ROD_12511" FT /product="SOS mutagenesis and repair protein" FT /db_xref="GOA:D2TUG1" FT /db_xref="InterPro:IPR001126" FT /db_xref="InterPro:IPR017961" FT /db_xref="InterPro:IPR017963" FT /db_xref="InterPro:IPR024728" FT /db_xref="UniProtKB/TrEMBL:D2TUG1" FT /protein_id="CBG88014.1" FT /translation="MFALCDVNNFYTSCETVFRPDLKGKPVIVLSNNDGCVISRSAEAQ FT PFVKMGEPYFKLKDRLKHHGVVCFSSNYELYADMSERVMSTIEALTPRCERYSIDEIFC FT DLTGVRNCRDLTEFGREIRATVLQHTHLTVGVGIAPTKTLAKLANHAAKRWQRQTGGVV FT DLSDSDRQRKLMAALPVEEVWGIGRRLTKRLNSMGIETVLQLAETDIRFIRKHFTVVLE FT RTVRELRGEACLELDEFAPTKQEIICSRSFGDCVTEYEEMRQAICSYAARAAEKLRSEH FT QFSRFISAFVKTSPYALHRPYYSNSASIKLLTPTQDSRDIINAASRCLEAIWKEGHRYQ FT KAGVMLGDFYSQGVAQLNLFDDNAPHAGSDKLMNVLDRLNAEGGRGTLYFAGQGIQQQW FT QMKREMLSPRYTTRYADLLTVK" FT misc_feature complement(1354055..1355095) FT /gene="umuC" FT /locus_tag="ROD_12511" FT /note="HMMPfam hit to PF00817, UMUC-like DNA-repair FT protein, score 3.4e-161" FT /inference="protein motif:PFAM:PF00817" FT CDS 1355143..1355307 FT /transl_table=11 FT /locus_tag="ROD_12521" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TUG2" FT /protein_id="CBG88015.1" FT /translation="MGVALEQKYIQDDTPFTIRLRGAKKNPAGSIAGQAKCHYLALSGR FT CGNQHYDHH" FT CDS 1355511..1356149 FT /transl_table=11 FT /locus_tag="ROD_12531" FT /product="putative transport protein" FT /db_xref="GOA:D2TUG3" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:D2TUG3" FT /protein_id="CBG88016.1" FT /translation="MFAEYGVLNYWTYLAGAIFIVLVPGPNTLFVLKNSVGRGIKGGYL FT AAGGVFIGDAVLMFLAYAGVATLIKTTPVLFNIVRYLGAFYLLYLGARILWSTLTAKSA FT AAAEGAAPFGAIFKRALVLSLTNPKAILFYVSFFVQFIDVNAPHAGLSFFILATTLEVV FT SFCYLSFLIVSGAFVTQYIRTKKKLAKVGNSLIGLLFVGFAARLATLQS" FT misc_feature join(1355538..1355606,1355643..1355711,1355739..1355807, FT 1355868..1355936,1355979..1356047,1356081..1356140) FT /locus_tag="ROD_12531" FT /note="6 probable transmembrane helices predicted for FT ROD12531 by TMHMM2.0 at aa 10-32, 45-67, 77-99, 120-142, FT 157-179 and 191-210" FT misc_feature 1355562..1356143 FT /locus_tag="ROD_12531" FT /note="HMMPfam hit to PF01810, Lysine exporter protein FT (LYSE/YGGA), score 2e-60" FT /inference="protein motif:PFAM:PF01810" FT CDS 1356315..1356677 FT /transl_table=11 FT /locus_tag="ROD_12541" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR014510" FT /db_xref="InterPro:IPR014710" FT /db_xref="InterPro:IPR015392" FT /db_xref="UniProtKB/TrEMBL:D2TUG4" FT /protein_id="CBG88017.1" FT /translation="MLQIPQNHIHTRSTPFWNKETAPAGIFERHLDKDTRPGVYPRLSV FT MQGAVKYLGYADEHSPEPEKVMIIEAGQFGVFPPEKWHNIEVMTDDTYFNIDFFVAPEV FT LMESAGQRKVIHTGKK" FT misc_feature 1356348..1356605 FT /locus_tag="ROD_12541" FT /note="HMMPfam hit to PF09313, Protein of unknown function FT DUF1971, score 1.1e-38" FT /inference="protein motif:PFAM:PF09313" FT CDS 1356680..1356862 FT /transl_table=11 FT /locus_tag="ROD_12551" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR015051" FT /db_xref="UniProtKB/TrEMBL:D2TUG5" FT /protein_id="CBG88018.1" FT /translation="MGKATYTVTVTNNSNGVSVDYETETPMSLLVPEVAAEVVKDLVNT FT VRSYDTENEHDVCGW" FT misc_feature 1356680..1356859 FT /locus_tag="ROD_12551" FT /note="HMMPfam hit to PF08956, Protein of unknown function FT DUF1869, score 3e-48" FT /inference="protein motif:PFAM:PF08956" FT CDS 1357061..1357708 FT /transl_table=11 FT /locus_tag="ROD_12561" FT /product="putative outer membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TUG6" FT /protein_id="CBG88019.1" FT /translation="MKFDLQFSSTALFLTLAAVVIPFTANWHLPLYHGALVLWIENGQA FT LWLLSGALFSAWYIRPLSRPQGAKQFWLWAVIWWVVLLGRSTSWGRDYFPAEPRVLFRG FT ISVMLIAALVLPVFLSASLRREITRRLREEPLPVWLFALTGCSFLISDTVEHHRLLAPL FT FLHDVKYTDLIEELYELPFMAGLFFITLGFMQKEKRREENALPLGEPQRVGY" FT sig_peptide 1357061..1357132 FT /locus_tag="ROD_12561" FT /note="Signal peptide predicted for ROD12561 by SignalP 2.0 FT HMM (Signal peptide probability 0.634) with cleavage site FT probability 0.423 between residues 24 and 25" FT misc_feature join(1357073..1357141,1357169..1357237,1357271..1357330, FT 1357358..1357426,1357463..1357522,1357580..1357639) FT /locus_tag="ROD_12561" FT /note="6 probable transmembrane helices predicted for FT ROD12561 by TMHMM2.0 at aa 5-27, 37-59, 71-90, 100-122, FT 135-154 and 174-193" FT misc_feature 1357466..1357498 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_RNA complement(1357833..1357914) FT /note="Rfam:RF00057;RyhB;Score=58.64;positions 1 to 60" FT CDS 1358094..1358342 FT /transl_table=11 FT /locus_tag="ROD_12571" FT /product="putative transglycosylase associated protein" FT /db_xref="GOA:D2TUG7" FT /db_xref="InterPro:IPR007341" FT /db_xref="UniProtKB/TrEMBL:D2TUG7" FT /protein_id="CBG88020.1" FT /translation="MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGW FT ISTLFGFGRVDGFNFGSFVVAVIGAIVVLLIYRKIKS" FT misc_feature join(1358097..1358156,1358184..1358252,1358271..1358324) FT /locus_tag="ROD_12571" FT /note="3 probable transmembrane helices predicted for FT ROD12571 by TMHMM2.0 at aa 2-21, 31-53 and 60-77" FT misc_feature 1358190..1358339 FT /locus_tag="ROD_12571" FT /note="HMMPfam hit to PF04226, Transglycosylase-associated FT protein, score 9.3e-20" FT /inference="protein motif:PFAM:PF04226" FT CDS 1358630..1358743 FT /transl_table=11 FT /locus_tag="ROD_12581" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TUG8" FT /protein_id="CBG88021.1" FT /translation="MGGKRDFIRLFINVKHGNVDAAQENMEPQTLARYAIG" FT CDS 1358771..1359019 FT /transl_table=11 FT /locus_tag="ROD_12591" FT /product="putative exported protein" FT /db_xref="InterPro:IPR005590" FT /db_xref="UniProtKB/TrEMBL:D2TUG9" FT /protein_id="CBG88022.1" FT /translation="MLFIMLSCACFLSACDTASQPEAPKPPIIGMPNPAAVYCGEKGGT FT LVPVQSPQGVRSDCKLPGGEVIEEWTLWRRDHPQTGK" FT sig_peptide 1358771..1358824 FT /locus_tag="ROD_12591" FT /note="Signal peptide predicted for ROD12591 by SignalP 2.0 FT HMM (Signal peptide probability 0.910) with cleavage site FT probability 0.630 between residues 18 and 19" FT misc_feature 1358783..1358815 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1358789..1359001 FT /locus_tag="ROD_12591" FT /note="HMMPfam hit to PF03891, Protein of unknown function FT DUF333, score 5.4e-23" FT /inference="protein motif:PFAM:PF03891" FT CDS 1359094..1359405 FT /transl_table=11 FT /locus_tag="ROD_12601" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TUH0" FT /protein_id="CBG88023.1" FT /translation="MFQLKPGTVALVIGAKTSAGRCNIGKSVELFQLCQPGEVFINPVN FT GFTTMLPKASPRALWLVTGEVVSASGQQGVAWVRAEHLMPLSPDRQPDDATTGESQFA" FT misc_feature 1359151..1359174 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(1359391..1359738) FT /transl_table=11 FT /locus_tag="ROD_12611" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007438" FT /db_xref="UniProtKB/TrEMBL:D2TUH1" FT /protein_id="CBG88024.1" FT /translation="MKIQCKRLYKPAEQSDGYRVLVDRLWPRGIKKTDLAFDEWVKPLA FT PSGELRKAFHAQTIDFTHFSERYREELAAQRQQGQRLASIARQQTLTLLYGAKNSEQNH FT AIVLAAWLREL" FT misc_feature complement(1359400..1359735) FT /locus_tag="ROD_12611" FT /note="HMMPfam hit to PF04343, Protein of unknown function FT DUF488, score 2.2e-42" FT /inference="protein motif:PFAM:PF04343" FT CDS complement(1359722..1360231) FT /transl_table=11 FT /locus_tag="ROD_12612" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007553" FT /db_xref="UniProtKB/TrEMBL:D2TUH2" FT /protein_id="CBG88025.1" FT /translation="MKSKILISACLMGFKVRYNGSEKARLNATLARLQDEQRLIVHCPE FT LAAGLPTPRPPAEIIAANGEAVLEGRARVYEKSGNDATAHYQLAAWLALRAAQEAGCDV FT ALLTDGSPTCGSRFIYDGTFSGQRHPGMGVAATLLHQHGITVFSDQQLSEFCAWIEEKD FT KHEDSV" FT misc_feature complement(1359797..1360222) FT /locus_tag="ROD_12612" FT /note="HMMPfam hit to PF04463, Protein of unknown function FT DUF523, score 3.1e-60" FT /inference="protein motif:PFAM:PF04463" FT CDS 1360230..1360340 FT /transl_table=11 FT /locus_tag="ROD_12631" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TUH3" FT /protein_id="CBG88026.1" FT /translation="MMMSLAKRKTERYHYNTSQGVNSKLKDCDSSKRSVV" FT CDS 1360386..1361093 FT /transl_table=11 FT /locus_tag="ROD_12641" FT /product="conserved hypothetical protein" FT /db_xref="GOA:D2TUH4" FT /db_xref="InterPro:IPR004468" FT /db_xref="InterPro:IPR017926" FT /db_xref="UniProtKB/TrEMBL:D2TUH4" FT /protein_id="CBG88027.1" FT /translation="MKISPVKDTLRIALVGDYNASVTAHQAIPLAIDDAAAVLELIADY FT DWLASAEITSGEDLVGYDAIWVVPGSPYKNTDGALTAIRYARENGIPFLGTCGGFQHAI FT LEYARNVLGWRDAAHAETDTQGRMVIAPLACSLVEKTDDIELRSNTLIARAYGQTLISE FT GYHCNYGISTAFAGELESGDLRVTGWDDNGDIRAVELVTHPFFVATLFQHERGALAGKP FT VPLVQAMLRAAQG" FT misc_feature 1360590..1360736 FT /locus_tag="ROD_12641" FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I, score 9.2e-08" FT /inference="protein motif:PFAM:PF00117" FT CDS complement(1361211..1361657) FT /transl_table=11 FT /locus_tag="ROD_12651" FT /product="putative outer membrane protein" FT /db_xref="GOA:D2TUH5" FT /db_xref="InterPro:IPR007382" FT /db_xref="UniProtKB/TrEMBL:D2TUH5" FT /protein_id="CBG88028.1" FT /translation="MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLNAFFPW FT IEKQGLTIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIVVGVGVSWLGGRGVT FT LMGSQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ" FT misc_feature complement(1361214..1361657) FT /locus_tag="ROD_12651" FT /note="HMMPfam hit to PF04284, Protein of unknown function FT DUF441, transmembrame, score 1.4e-87" FT /inference="protein motif:PFAM:PF04284" FT misc_feature complement(join(1361220..1361288,1361358..1361426, FT 1361445..1361513,1361556..1361624)) FT /locus_tag="ROD_12651" FT /note="4 probable transmembrane helices predicted for FT ROD12651 by TMHMM2.0 at aa 12-34, 49-71, 78-100 and FT 124-146" FT sig_peptide complement(1361586..1361657) FT /locus_tag="ROD_12651" FT /note="Signal peptide predicted for ROD12651 by SignalP 2.0 FT HMM (Signal peptide probability 0.975) with cleavage site FT probability 0.511 between residues 24 and 25" FT CDS 1361838..1361942 FT /transl_table=11 FT /gene="yoaI" FT /locus_tag="ROD_12652" FT /product="putative membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TUH6" FT /protein_id="CBG88029.1" FT /translation="MNDQMFIETLIIAFSFFTIAALLVLSVLILERSG" FT misc_feature 1361856..1361924 FT /gene="yoaI" FT /locus_tag="ROD_12652" FT /note="1 probable transmembrane helix predicted for FT ROD12652 by TMHMM2.0 at aa 7-29" FT CDS complement(1361934..1362437) FT /transl_table=11 FT /locus_tag="ROD_12661" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007214" FT /db_xref="UniProtKB/TrEMBL:D2TUH7" FT /protein_id="CBG88030.1" FT /translation="MCEVAKGNVTHQRLLDLLSLEGARYRVVSHQAVGKCEAVSEIRGT FT ALGQGAKALVCKVKGNGVNQHVLAILAADQQADLARLAAHLGGLRASLASPAEVNALTG FT CVFGAIPPFSFHPQLKLVADPLLFERFSEIAFNAGVLDKSIILNTEDYLRIARPEQVIF FT RRLA" FT misc_feature complement(1361949..1362380) FT /locus_tag="ROD_12661" FT /note="HMMPfam hit to PF04073, YbaK/prolyl-tRNA synthetase FT associated region, score 1.7e-46" FT /inference="protein motif:PFAM:PF04073" FT CDS complement(1362479..1363969) FT /transl_table=11 FT /locus_tag="ROD_12671" FT /product="putative signal transduction protein" FT /db_xref="GOA:D2TUH8" FT /db_xref="InterPro:IPR000160" FT /db_xref="InterPro:IPR001054" FT /db_xref="UniProtKB/TrEMBL:D2TUH8" FT /protein_id="CBG88031.1" FT /translation="MKLHHKALRLFISVSVVVLTSSFLLLELVNSHRAMNGYMRYLIEK FT ADSSFLYEKYRNQSIAAHLMRTFSTPETPFSAAKRRAVCQAFERVNTVYGVNLTRHNYL FT ALHGTLQTAVPECAHIADEVLQLAAFDQAVMVNRQQTDYGKGLATAGESFRYYLDLQNH FT LIYFYNLVDTRQFAMRHWHFLQEGTLGINLPDIEGVFTGRTVLSSIYQDDRTEHNVMSF FT LTPVYQDGRLKGMVMVDINKQKLQTIFYPRDRPLVWRYLNIAVTDTDSHKSIHIHESTN FT NLFHYVRYTIDLPGGLHVELSLDILYFVVSNWKIFLFYLLATALLLNMVRLHFRLYHNV FT SRENISDAMTGLYNRKILTSTFEQRLQRLVSGGTPVTFIAIDLDKLKQINDTQGHQEGD FT RAIHLLAQAIEASVRKSDYAIRLGGDEFCVILIDAEPALTAHLPERIQHYLETIAPGNE FT IRFSSGYYNMQANDTLQDAYKASDEQLYLNKHKNRQRS" FT misc_feature complement(1362485..1362952) FT /locus_tag="ROD_12671" FT /note="HMMPfam hit to PF00990, GGDEF, score 1.3e-39" FT /inference="protein motif:PFAM:PF00990" FT misc_feature complement(join(1362989..1363057,1363883..1363951)) FT /locus_tag="ROD_12671" FT /note="2 probable transmembrane helices predicted for FT ROD12671 by TMHMM2.0 at aa 7-29 and 305-327" FT sig_peptide complement(1363892..1363969) FT /locus_tag="ROD_12671" FT /note="Signal peptide predicted for ROD12671 by SignalP 2.0 FT HMM (Signal peptide probability 0.708) with cleavage site FT probability 0.508 between residues 26 and 27" FT CDS complement(1364106..1365389) FT /transl_table=11 FT /locus_tag="ROD_12681" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR006698" FT /db_xref="UniProtKB/TrEMBL:D2TUH9" FT /protein_id="CBG88032.1" FT /translation="MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAINKRSVTD FT VDSGESVSIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQGQ FT ASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGFTSNGVPAN FT ISVVRSLQNSLARRTAMTAGKRRELHALEQDLETISQSEPAQLLEEERLRKEIAELRAK FT IERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQATKDMAKRFYILLYLFLS FT RTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKARYDPAQWNIY FT AAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHLQASFDNF FT AMQHIRDQDDIYPVFRELFHKQGTTSAS" FT misc_feature complement(1364121..1365389) FT /locus_tag="ROD_12681" FT /note="HMMPfam hit to PF04285, Protein of unknown function FT DUF444, score 2.6e-286" FT /inference="protein motif:PFAM:PF04285" FT CDS complement(1365513..1367447) FT /transl_table=11 FT /locus_tag="ROD_12691" FT /product="putative serine protein kinase" FT /db_xref="GOA:D2TUI0" FT /db_xref="InterPro:IPR010650" FT /db_xref="InterPro:IPR013153" FT /db_xref="InterPro:IPR016230" FT /db_xref="UniProtKB/TrEMBL:D2TUI0" FT /protein_id="CBG88033.1" FT /translation="MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMA FT IGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQ FT ILYLLGPVGGGKSSLAERLKSLMQRVPIYVLSANGERSPVNDHPLCLFNPQEDAQILEK FT EYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILEQIAIAKTEPGDENNQDI FT SALVGKVDIRKLENHAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQE FT GNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIK FT IYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPK FT AKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHAEVAANPVHLFYVLEQQIEREQ FT FPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQ FT EYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNNGRNPNWTS FT YEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCE FT WYLRVRKSS" FT misc_feature complement(1365540..1366304) FT /locus_tag="ROD_12691" FT /note="HMMPfam hit to PF06798, PrkA serine kinase, score FT 4.7e-181" FT /inference="protein motif:PFAM:PF06798" FT misc_feature complement(1366308..1367393) FT /locus_tag="ROD_12691" FT /note="HMMPfam hit to PF08298, PrkA AAA, score 1.9e-270" FT /inference="protein motif:PFAM:PF08298" FT misc_feature complement(1367097..1367120) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 1367889..1368635 FT /transl_table=11 FT /gene="mipA" FT /locus_tag="ROD_12701" FT /product="MltA-interacting protein" FT /db_xref="InterPro:IPR010583" FT /db_xref="InterPro:IPR017690" FT /db_xref="UniProtKB/TrEMBL:D2TUI1" FT /protein_id="CBG88034.1" FT /translation="MTKLKLLALGVLIATSATVAHAESNLTLGAGVGVVEHPYKDYDAD FT VYPVPVISYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPMYFKPGDSDDRQLRRLDK FT RKSTVMAGLSYIHNTEYGFLRTTLSGDTLDNSNGIVWDLAWLYRYTNGGLTLTPGIGVE FT WNSENQNEYYYGVSRKESAQSGLRGYNPDDSWNTYLELSANYNFLGDWSVYGTARYTRL FT SDEITDSPMIDKSWTGLISTGITYKF" FT sig_peptide 1367889..1367954 FT /gene="mipA" FT /locus_tag="ROD_12701" FT /note="Signal peptide predicted for ROD12701 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.995 between residues 22 and 23" FT misc_feature 1367961..1368632 FT /gene="mipA" FT /locus_tag="ROD_12701" FT /note="HMMPfam hit to PF06629, MltA-interacting MipA, score FT 3.4e-99" FT /inference="protein motif:PFAM:PF06629" FT CDS 1368726..1369580 FT /transl_table=11 FT /locus_tag="ROD_12711" FT /product="putative aldo/keto reductase" FT /db_xref="GOA:D2TUI2" FT /db_xref="InterPro:IPR001395" FT /db_xref="InterPro:IPR020471" FT /db_xref="InterPro:IPR023210" FT /db_xref="UniProtKB/TrEMBL:D2TUI2" FT /protein_id="CBG88035.1" FT /translation="MTEKQIVFAGHAALPAIGQGTWYMGERADMRKAEVAALRAGVDAG FT LTLIDTAEMYADGGAEEVVGDALNGRRDKVFLVSKVYPWNAGGQKAIAACEASLRRLQT FT DYLDLYLLHWSGSFSFEETVAAMETLIAQGKIRRWGVSNLDYDDMQALWQVAGGRACAT FT NQVLYHLASRGIEYDLLPWCQQQNLPVMAYSPLAQAGRLRNGLFNHPVVNDIAQTHNAS FT AAQILLAWGISHPGVMAIPKAASVEHVQQNAAALEITLSADELAALDKAYPAPKGKTAL FT DMV" FT misc_feature 1368747..1369544 FT /locus_tag="ROD_12711" FT /note="HMMPfam hit to PF00248, Aldo/keto reductase, score FT 2.8e-70" FT /inference="protein motif:PFAM:PF00248" FT CDS complement(1369667..1370551) FT /transl_table=11 FT /locus_tag="ROD_12721" FT /product="putative aldose 1-epimerase" FT /db_xref="GOA:D2TUI3" FT /db_xref="InterPro:IPR008183" FT /db_xref="InterPro:IPR011013" FT /db_xref="InterPro:IPR014718" FT /db_xref="UniProtKB/TrEMBL:D2TUI3" FT /protein_id="CBG88036.1" FT /translation="MINKIFALPITEQITPVLSRRQLDELELIVVDHPQVKASFALQGA FT HLLSWKPAGEEEVLWLSNNTPFKNGVALRGGVPICWPWFGPSAQQGFPSHGFARNLPWT FT LKAHNEDDNGAVLTFELQNSDATRQYWPQDFTLLARFKVGKTCEIELEAHGDFETTSAL FT HTYFNVGDITAVKVSGLGDRFIDKVNDAREDVLADGVQAFPDRTDRVYLNPEACSVIHD FT TALNRNIDVIHHHHLNVVGWNPGPALSVSMGDMPDDGYKTFVCVETAYATAPQKATEEK FT PSRLAQTIRVTKR" FT misc_feature complement(1369688..1370473) FT /locus_tag="ROD_12721" FT /note="HMMPfam hit to PF01263, Aldose 1-epimerase, score FT 1.5e-46" FT /inference="protein motif:PFAM:PF01263" FT misc_feature complement(1370114..1370137) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(1370635..1371630) FT /transl_table=11 FT /gene="gapA" FT /locus_tag="ROD_12731" FT /product="glyceraldehyde 3-phosphate dehydrogenase A" FT /EC_number="1.2.1.12" FT /db_xref="GOA:D2TUI4" FT /db_xref="InterPro:IPR006424" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR020828" FT /db_xref="InterPro:IPR020829" FT /db_xref="InterPro:IPR020830" FT /db_xref="InterPro:IPR020831" FT /db_xref="UniProtKB/TrEMBL:D2TUI4" FT /protein_id="CBG88037.1" FT /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYML FT KYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDE FT TARKHITAGAKKVVLTGPSKDDTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVIN FT DNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGAAQNIIPSSTGAAKAVGKVLPEL FT NGKLTGMAFRVPTPNVSVVDLTVRLEKAASYEEIKKAIKAASEGEMKGVLGYTEDDVVS FT TDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK" FT misc_feature complement(1370695..1371168) FT /gene="gapA" FT /locus_tag="ROD_12731" FT /note="HMMPfam hit to PF02800, Glyceraldehyde 3-phosphate FT dehydrogenase, score 1.9e-118" FT /inference="protein motif:PFAM:PF02800" FT misc_feature complement(1371166..1371189) FT /note="PS00071 Glyceraldehyde 3-phosphate dehydrogenase FT active site." FT /inference="protein motif:Prosite:PS00071" FT misc_feature complement(1371181..1371624) FT /gene="gapA" FT /locus_tag="ROD_12731" FT /note="HMMPfam hit to PF00044, Glyceraldehyde 3-phosphate FT dehydrogenase, score 1.5e-98" FT /inference="protein motif:PFAM:PF00044" FT CDS 1372012..1372386 FT /transl_table=11 FT /gene="msrB" FT /locus_tag="ROD_12741" FT /product="peptide methionine sulfoxide reductase" FT /EC_number="1.8.4.12" FT /db_xref="GOA:D2TUI5" FT /db_xref="InterPro:IPR002579" FT /db_xref="InterPro:IPR011057" FT /db_xref="UniProtKB/TrEMBL:D2TUI5" FT /protein_id="CBG88038.1" FT /translation="MSEMQFYVTQNHGTEPPFTGQLLHNKRDGVYHCLICDAPLFTSRS FT KYDSGCGWPSFYEPVSDEAIRYLNDDSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERY FT CVNSASLSFTDDENGEQIQG" FT misc_feature 1372012..1372359 FT /gene="msrB" FT /locus_tag="ROD_12741" FT /note="HMMPfam hit to PF01641, Methionine sulphoxide FT reductase B, score 2.3e-79" FT /inference="protein motif:PFAM:PF01641" FT CDS 1372428..1372703 FT /transl_table=11 FT /locus_tag="ROD_12751" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR009749" FT /db_xref="UniProtKB/TrEMBL:D2TUI6" FT /protein_id="CBG88039.1" FT /translation="MNLDEIINNMTPEVYQRLVTAVELGKWPDGVALTAEQKENSLQLV FT MLWQARHNTDAQHMTIDTNGQMVMKSKQQLKEDFGIAPKPIATFKS" FT misc_feature 1372428..1372697 FT /locus_tag="ROD_12751" FT /note="HMMPfam hit to PF07023, Protein of unknown function FT DUF1315, score 1.3e-61" FT /inference="protein motif:PFAM:PF07023" FT CDS complement(1372763..1373107) FT /transl_table=11 FT /locus_tag="ROD_12761" FT /product="putative endonuclease" FT /db_xref="GOA:D2TUI7" FT /db_xref="InterPro:IPR002711" FT /db_xref="InterPro:IPR003615" FT /db_xref="InterPro:IPR015880" FT /db_xref="UniProtKB/TrEMBL:D2TUI7" FT /protein_id="CBG88040.1" FT /translation="MAFIPRNYARLEVGYREKALKLFPWVCGRCSREFVYSNLRELTVH FT HIDHDHSNNPEDGSNWEMLCLYCHDHEHSKYTEADQYGSTVVAGEDAQKSVGEATYNPF FT ADLKAMMNKK" FT misc_feature complement(1372880..1373035) FT /locus_tag="ROD_12761" FT /note="HMMPfam hit to PF01844, HNH endonuclease, score FT 3.1e-05" FT /inference="protein motif:PFAM:PF01844" FT misc_feature complement(1372898..1372915) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT /inference="protein motif:Prosite:PS00190" FT CDS complement(1373226..1374479) FT /transl_table=11 FT /locus_tag="ROD_12771" FT /product="putative exported protein" FT /db_xref="GOA:D2TUI8" FT /db_xref="InterPro:IPR001223" FT /db_xref="InterPro:IPR011583" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/TrEMBL:D2TUI8" FT /protein_id="CBG88041.1" FT /translation="MKLLPLLAALPLLCASVASAGSLMSVGYFNGGGDVTAGPGGDINK FT LDVRQITHLNYSFGLIYNAEKDETNPALKDPAKLHQIWLSPKVQSDLALLPVLRKQNPR FT LKVLLSVGGWGARGFSGAAATAQTRAVFIRSAQDIVAKYGLDGIELDWEYPVNGAWGLV FT ESQPADRENFTLLLKELRQAFGKAKLITIAVGANAESPKSWVDVKAIAPLLDYINLMTY FT DMAYGTQYFNANLYDSKAWPTVAAADKYSVDFVVNNYLAAGLKPRQMNLGIGFYGRVPK FT RSVEPGIDWSKPDAQKNPVTLPWFGEREIALFKSLGIDLKKDTYVKYNDIVKTFLNDPQ FT KRFTEQWDDEAKVPWLSVKSAAGKELFALSYENPRSVAIKADYIKKRGLAGAMFWEYGA FT DDNNQLAKQLAESLAITP" FT misc_feature complement(1373280..1374413) FT /locus_tag="ROD_12771" FT /note="HMMPfam hit to PF00704, Glycoside hydrolase, family FT 18, catalytic domain, score 1.9e-76" FT /inference="protein motif:PFAM:PF00704" FT sig_peptide complement(1374420..1374479) FT /locus_tag="ROD_12771" FT /note="Signal peptide predicted for ROD12771 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.917 between residues 20 and 21" FT CDS 1374771..1375847 FT /transl_table=11 FT /locus_tag="ROD_12781" FT /product="putative zinc-binding dehydrogenase" FT /db_xref="GOA:D2TUI9" FT /db_xref="InterPro:IPR002085" FT /db_xref="InterPro:IPR002328" FT /db_xref="InterPro:IPR011032" FT /db_xref="InterPro:IPR013149" FT /db_xref="InterPro:IPR013154" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TUI9" FT /protein_id="CBG88042.1" FT /translation="MKALARFGKAFGGYRMIDVPVPVCGPDDVVIEIKAAAICGADMKH FT YKVDSGSDQFNSIRGHEFAGCIAQVGANVKDWKVGQRVVSDNSGHVCGVCPACEQGDFL FT CCTEKVNLGLDNNPWGGGFSKYCLVPGEILKIHRHALWEIPQGVDYEEAAVLDPICNAY FT KSIAQQSRFLPGQDVVVIGTGPLGLFSVQMARIMGAVNIVVVGLEDDVPVRFPIAKELG FT ATAVVNGSTEDVVARCQAICGKDNLGLVIECSGANIALKQAIEMLRPNGEVVRVGMGFK FT PLDFSINDITAWNKSIIGHMAYDSTSWRNAIRLLASGAIKVKPMITHRIGLSRWREGFD FT AMLDKTAIKVIMTYDFDE" FT misc_feature 1374846..1375202 FT /locus_tag="ROD_12781" FT /note="HMMPfam hit to PF08240, Alcohol dehydrogenase FT GroES-like, score 8.2e-38" FT /inference="protein motif:PFAM:PF08240" FT misc_feature 1374948..1374992 FT /note="PS00059 Zinc-containing alcohol dehydrogenases FT signature." FT /inference="protein motif:Prosite:PS00059" FT misc_feature 1375290..1375721 FT /locus_tag="ROD_12781" FT /note="HMMPfam hit to PF00107, Alcohol dehydrogenase, FT zinc-binding, score 1.2e-41" FT /inference="protein motif:PFAM:PF00107" FT CDS 1375874..1377253 FT /transl_table=11 FT /locus_tag="ROD_12791" FT /product="major facilitator superfamily protein" FT /db_xref="GOA:D2TUJ0" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="InterPro:IPR020846" FT /db_xref="UniProtKB/TrEMBL:D2TUJ0" FT /protein_id="CBG88043.1" FT /translation="MEQITKPHCGARLDRLPDCRWHTSMFAMVAFGLLVCWSNAVGGLI FT LAQLKELGWTNNSTTATFSAITTAGMFLGALVGGIIGDKTGRRNAYILYEAIHIAAMVI FT GAFSPNMDFLIACRFVMGVGLGALLVTLFAGFTEYMPGRNRGTWSSRVSFIGNWSYPLC FT SLIAMALTPLISAEWNWRVQLLIPAALSLIATAFAWRWFPESPRWLESRGRYEEADKVM FT RAIEESVMRQTGKPLPPVVIDTNGKPPRSVPYSALLTGVLLKRVILGSCVLIAMNVVQY FT TLINWLPTIFMTQGINLKDSIVLNTMSMFGAPFGIFIAMLVMDKIPRKTMGVGLLMLIA FT VLGYIYSLQTSMLLITLIGFFLITFVYMYVCYALAVYVPEIWPTEAKLRGSGLANAVGR FT ISGIAAPYAVAVLLNGYGVTGVFILLGAVSLIVAVAIATIGIETKGVSVESLGIDAVVN FT K" FT misc_feature join(1375946..1376014,1376048..1376116,1376144..1376197, FT 1376216..1376284,1376327..1376395,1376414..1376482, FT 1376669..1376737,1376774..1376842,1376861..1376914, FT 1376933..1377001,1377044..1377112,1377131..1377199) FT /locus_tag="ROD_12791" FT /note="12 probable transmembrane helices predicted for FT ROD12791 by TMHMM2.0 at aa 25-47, 59-81, 91-108, 115-137, FT 152-174, 181-203, 266-288, 301-323, 330-347, 354-376, FT 391-413 and 420-442" FT misc_feature 1375952..1377115 FT /locus_tag="ROD_12791" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 2.4e-27" FT /inference="protein motif:PFAM:PF07690" FT CDS 1377264..1378307 FT /transl_table=11 FT /locus_tag="ROD_12801" FT /product="putative zinc-binding dehydrogenase" FT /db_xref="GOA:D2TUJ1" FT /db_xref="InterPro:IPR002085" FT /db_xref="InterPro:IPR002328" FT /db_xref="InterPro:IPR011032" FT /db_xref="InterPro:IPR013149" FT /db_xref="InterPro:IPR013154" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TUJ1" FT /protein_id="CBG88044.1" FT /translation="MQNSKAILATPGTMKIIAADIPVPKDNEVLIKVEYVGICGSDVHG FT FESGPFIPPKDPRQEIGLGHECAGTVVAVGRRVSKFKPGDRVNIEPGVPCGRCRYCLEG FT KYNICPDVDFMATQPNYRGALTHYLCHPESFTYHLPDNMDTMEGALVEPAAVGMHAAML FT AEVRPGKKIVILGAGCIGLMTLQACKCLGATDITVVDVLEKRLAKAEQLGASTVINGAT FT EDTVGRCQQLSGEQGADIVFETAGSPLTVRQAPYLVMRGGKIMIVGTVAGDSAINFLKI FT NREVTIQTVFRYANRYPVTIEAIASGRFDVKSMVTHIYDYDDVQRAFEESVNNKSDIIK FT GVIKISD" FT misc_feature 1377339..1377680 FT /locus_tag="ROD_12801" FT /note="HMMPfam hit to PF08240, Alcohol dehydrogenase FT GroES-like, score 8.5e-41" FT /inference="protein motif:PFAM:PF08240" FT misc_feature 1377453..1377497 FT /note="PS00059 Zinc-containing alcohol dehydrogenases FT signature." FT /inference="protein motif:Prosite:PS00059" FT misc_feature 1377495..1377533 FT /note="PS00693 Riboflavin synthase alpha chain family FT signature." FT /inference="protein motif:Prosite:PS00693" FT misc_feature 1377765..1378181 FT /locus_tag="ROD_12801" FT /note="HMMPfam hit to PF00107, Alcohol dehydrogenase, FT zinc-binding, score 1.9e-39" FT /inference="protein motif:PFAM:PF00107" FT misc_feature 1377795..1377827 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS 1378327..1379163 FT /transl_table=11 FT /locus_tag="ROD_12811" FT /product="putative sugar-bisphosphate aldolase" FT /db_xref="GOA:D2TUJ2" FT /db_xref="InterPro:IPR000771" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:D2TUJ2" FT /protein_id="CBG88045.1" FT /translation="MLADIKYWEKDAQNKRYAIAHFNVWNAEMLMGVIDAAEEAKAPVI FT ISFGTGFVGNTSFEDFSQMMVAMAKKASVPVITHWDHGRSMEIIHNAWVHGMNSLMRDA FT SAFDFEENIRLTKEAVDFFHPLGIAIEAELGHVGNETVYEEALAGYHYTDPDQAAEFVE FT RTGCDSLAVAIGNQHGVYTSEPKLNFDVVERVRRAVSVPLVLHGASGISDADIKKAISL FT GIAKINIHTELCQAAMTAVKENQHQPFLHLQREVRKAVKARALEKINLFGSDGKAE" FT misc_feature 1378327..1379157 FT /locus_tag="ROD_12811" FT /note="HMMPfam hit to PF01116, Ketose-bisphosphate FT aldolase, class-II, score 6.5e-68" FT /inference="protein motif:PFAM:PF01116" FT CDS 1379168..1380115 FT /transl_table=11 FT /locus_tag="ROD_12821" FT /product="putative sugar kinase" FT /db_xref="GOA:D2TUJ3" FT /db_xref="InterPro:IPR002139" FT /db_xref="InterPro:IPR002173" FT /db_xref="InterPro:IPR011611" FT /db_xref="UniProtKB/TrEMBL:D2TUJ3" FT /protein_id="CBG88046.1" FT /translation="MDEIEVLCIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAL FT NEATIISRLGHRTALMSRVGDDAAGHFIIGHCRKENIDIQSLKQDPQIDTSINVGLVTV FT DGERTFVTNRNGSLWKLNIDDIDFSRFSQVRLLSLASLFNSPLLDGKALTEIFSRAKAQ FT QLIICADMINPRLNETLEDIRQALSFVDYLFPNIDEAKKLTGKEALDDIADTFLQCGGK FT TVVIKTGKHGCFIKRADTRLQIPAVSGIDAIDTIGAGDNFAAGFISALLEGKTLRECAL FT FANATAAISVLSVGATSGVKNRILVEQLLDEYEG" FT misc_feature 1379174..1380076 FT /locus_tag="ROD_12821" FT /note="HMMPfam hit to PF00294, Carbohydrate/purine kinase, FT score 8.2e-74" FT /inference="protein motif:PFAM:PF00294" FT misc_feature 1379288..1379362 FT /note="PS00583 pfkB family of carbohydrate kinases FT signature 1." FT /inference="protein motif:Prosite:PS00583" FT misc_feature 1379927..1379968 FT /note="PS00584 pfkB family of carbohydrate kinases FT signature 2." FT /inference="protein motif:Prosite:PS00584" FT CDS 1380125..1381105 FT /transl_table=11 FT /locus_tag="ROD_12831" FT /product="putative sugar reductase" FT /db_xref="GOA:D2TUJ4" FT /db_xref="InterPro:IPR001395" FT /db_xref="InterPro:IPR020471" FT /db_xref="InterPro:IPR023210" FT /db_xref="UniProtKB/TrEMBL:D2TUJ4" FT /protein_id="CBG88047.1" FT /translation="MKMIPLGNTGISLSRMGLGTWAIGGGPAWNGDLDLRICIDTIIEA FT HRCGINLIDTAPGYNFGNSEVIVGQALKKLPRSEIVVETKCGIVWQREGSLFNKVGDRQ FT LYKNLSPDSIREEVEASLQRLGIDCIDIYMTHWQSVPPFFTPVAETVGVLNELKAEGKI FT RSIGAANVDAAHIHEYLKHGALDIVQAKYSILDRSLESELLPLCLENNIVVQVYSPLEQ FT GLLTGTITRDYVPEGARANKVWFQRQNMLRVLDMLEQWRPLCRKYQCAIPTLALAWILK FT QSNLISILSGATAPEQVRQNVEALAIELSDADSLLMREMAEALCQ" FT misc_feature 1380143..1381090 FT /locus_tag="ROD_12831" FT /note="HMMPfam hit to PF00248, Aldo/keto reductase, score FT 6.3e-37" FT /inference="protein motif:PFAM:PF00248" FT CDS 1381243..1382001 FT /transl_table=11 FT /locus_tag="ROD_12841" FT /product="DeoR-family transcriptional regulator" FT /db_xref="GOA:D2TUJ5" FT /db_xref="InterPro:IPR001034" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR014036" FT /db_xref="InterPro:IPR018356" FT /db_xref="UniProtKB/TrEMBL:D2TUJ5" FT /protein_id="CBG88048.1" FT /translation="MAAKDRIQAIRQMVTNDKKVVVSNLSALFQVTEETIRRDLEKLED FT EGFLTRTYGGAVLNVNALAENVHFYKRARSFYEEKQVIARKSLPFIKNKTTMAADSSST FT VMELLKLLKDRSDLTLLTNSAEAFHELAQSELNVVSTGGELNKNTLSLQGRITKEIISR FT YHVDIMVMSCKGLDRESGALDSNEAEAEIKKVMIRQAAEVALLVDHSKFDRKAFVQLID FT LSHINYIITNKAPGAEWVAFCKQNNIQLIY" FT misc_feature 1381258..1381428 FT /locus_tag="ROD_12841" FT /note="HMMPfam hit to PF08220, Bacterial regulatory FT protein, DeoR N-terminal, score 1.5e-18" FT /inference="protein motif:PFAM:PF08220" FT misc_feature 1381258..1381362 FT /note="PS00894 Bacterial regulatory proteins, deoR family FT signature." FT /inference="protein motif:Prosite:PS00894" FT misc_feature 1381471..1381938 FT /locus_tag="ROD_12841" FT /note="HMMPfam hit to PF00455, Bacterial regulatory FT protein, DeoR, score 1.2e-45" FT /inference="protein motif:PFAM:PF00455" FT CDS join(1382164..1382463,1385171..1386226) FT /pseudo FT /transl_table=11 FT /locus_tag="ROD_12851" FT /product="putative transport protein (pseudogene)" FT /note="pseudogene, disrupted by ICSCro1 insertion" FT misc_feature join(1382242..1382463,1385171..1386103) FT /locus_tag="ROD_12851" FT /note="HMMPfam hit to PF07690, Major facilitator FT superfamily MFS-1, score 1.3e-28" FT /inference="protein motif:PFAM:PF07690" FT repeat_region complement(1382456..1382463) FT /note="8 bp direct repeat flanking ISCro1" FT repeat_region complement(1382464..1385162) FT /note="Insertion sequence ISCro1. 1 of 21 intact ISCro1 FT elements in CR chromosome, all have 30 bp inverted repeats FT which contain 12 mismatches, and are flanked by direct FT repeats of varying length. This element has 8 bp direct FT repeats" FT repeat_region 1382464..1382493 FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT CDS complement(1382494..1384065) FT /transl_table=11 FT /locus_tag="ROD_12861" FT /product="ISCro1 transposase C" FT /db_xref="InterPro:IPR004291" FT /db_xref="InterPro:IPR024463" FT /db_xref="InterPro:IPR024474" FT /db_xref="UniProtKB/TrEMBL:D2TGY4" FT /protein_id="CBG88050.1" FT /translation="MDTSLAHENARLRALLQTQQDTIRQMAEYNRLLSQRVAAYASEIN FT RLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETLGEQYDPALPSAL FT RQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIETQR FT PKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQSEIYRRQGVEL FT SRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYV FT RDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYESGRITEAA FT CMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSAEQRLAARKARAASLMQ FT SLYDWIQTQMKTLSRHSDTAKAFAYLLKQWDSLNVYCSNGWVEIDNNIAENALRGVAVG FT RKNWLFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWK FT VDLSSQ" FT misc_feature complement(1383058..1383654) FT /locus_tag="ROD_12861" FT /note="HMMPfam hit to PF03050, Transposase, IS66, score FT 4.4e-129" FT /inference="protein motif:PFAM:PF03050" FT CDS complement(1384085..1384432) FT /transl_table=11 FT /locus_tag="ROD_12871" FT /product="ISCro1 transposase B" FT /db_xref="InterPro:IPR008878" FT /db_xref="UniProtKB/TrEMBL:D2TGY5" FT /protein_id="CBG88051.1" FT /translation="MISLPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFI FT FRGRRGDQIKVLWADSDGLCLFTKRLERGRFIWPVTRDGKVHLTPAQLSMLLEGINWKH FT PKRTERAGIRI" FT misc_feature complement(1384091..1384417) FT /locus_tag="ROD_12871" FT /note="HMMPfam hit to PF05717, Transposase (putative), IS66 FT Orf2 like, score 5.7e-70" FT /inference="protein motif:PFAM:PF05717" FT CDS complement(1384432..1385109) FT /transl_table=11 FT /locus_tag="ROD_12881" FT /product="ISCro1 transposase A" FT /db_xref="GOA:D2TGY6" FT /db_xref="InterPro:IPR002514" FT /db_xref="UniProtKB/TrEMBL:D2TGY6" FT /protein_id="CBG88052.1" FT /translation="MSIIFSGHYRMEYRTWITEALRLHFEEHLPRVVAGRRLGVPKSTV FT CSMFVRFRRAGLSWPLPAGMSEQELDACLYGQFSTVPVVRPESTVISETPVVKKRPRRP FT NFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQYRKGGLLPSGKNMPALLP FT VTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRLKGKLTPALLQTLIREIKG FT SSH" FT misc_feature complement(1384549..1384803) FT /locus_tag="ROD_12881" FT /note="HMMPfam hit to PF01527, Transposase IS3/IS911, score FT 2e-22" FT /inference="protein motif:PFAM:PF01527" FT misc_feature complement(1384960..1385025) FT /note="Predicted helix-turn-helix motif with score FT 1051.000, SD 2.77 at aa 29-50, sequence FT LPRVVAGRRLGVPKSTVCSMFV" FT repeat_region complement(1385133..1385162) FT /note="30 bp terminal inverted repeat of ISCro1, contains FT 12 mismatches" FT repeat_region complement(1385163..1385170) FT /note="8 bp direct repeat flanking ISCro1" FT CDS complement(1386278..1386919) FT /transl_table=11 FT /gene="pncA" FT /locus_tag="ROD_12901" FT /product="pyrazinamidase/nicotinamidase" FT /EC_number="3.5.1.-" FT /db_xref="GOA:D2TUJ9" FT /db_xref="InterPro:IPR000868" FT /db_xref="UniProtKB/TrEMBL:D2TUJ9" FT /protein_id="CBG88053.1" FT /translation="MTHRALLLVDLQNDFCAGGALAVPEGDSTVDIANRLISWCQARGV FT LVIASQDWHPANHGSFASQHQVEPYTRGQLDGLAQTFWPDHCVQHTEGAALHPLLNQQA FT IGEVFYKGENPQVDSYSAFFDNGRRQQTGLDAWLKAHDVSELIVMGLATDYCVKFTVLD FT ALQLGYSVNVITDGCRGVNLQPQDSSQAFMEMAAAGATLYTLADWEETQG" FT misc_feature complement(1386293..1386919) FT /gene="pncA" FT /locus_tag="ROD_12901" FT /note="HMMPfam hit to PF00857, Isochorismatase hydrolase, FT score 1.8e-81" FT /inference="protein motif:PFAM:PF00857" FT CDS complement(1386930..1387946) FT /transl_table=11 FT /gene="ansA" FT /locus_tag="ROD_12911" FT /product="L-Asparaginase I" FT /EC_number="3.5.1.1" FT /db_xref="GOA:D2TUK0" FT /db_xref="InterPro:IPR006033" FT /db_xref="InterPro:IPR006034" FT /db_xref="InterPro:IPR020827" FT /db_xref="UniProtKB/TrEMBL:D2TUK0" FT /protein_id="CBG88054.1" FT /translation="MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRPE FT MPDFTIHEYAPLMDSSDMTPADWQHIADDIQAHYDEYDGFVILHGTDTMAFTASALSFM FT LENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLFRGNRTTK FT AHADGFDAFASPNLQPLLEAGIHIRRLGTPPAPHGDGPLVVHPITPQPIGVVTIYPGIS FT ADVVRNFLRQPVKALILRSYGVGNAPQNKAFLRELSEASDRGIVVVNLTQCMSGKVNMG FT GYATGNALAHAGVIGGADMTVEATLTKLHFLLSQGLDTAAIRKAMRQNLRGELTPDD" FT misc_feature complement(1386978..1387934) FT /gene="ansA" FT /locus_tag="ROD_12911" FT /note="HMMPfam hit to PF00710, Asparaginase/glutaminase, FT score 5.4e-139" FT /inference="protein motif:PFAM:PF00710" FT misc_feature complement(1387665..1387697) FT /note="PS00917 Asparaginase / glutaminase active site FT signature 2." FT /inference="protein motif:Prosite:PS00917" FT misc_feature complement(1387899..1387925) FT /note="PS00144 Asparaginase / glutaminase active site FT signature 1." FT /inference="protein motif:Prosite:PS00144" FT CDS complement(1388023..1389879) FT /transl_table=11 FT /gene="sppA" FT /locus_tag="ROD_12921" FT /product="protease IV" FT /EC_number="3.4.21.-" FT /db_xref="GOA:D2TUK1" FT /db_xref="InterPro:IPR002142" FT /db_xref="InterPro:IPR004634" FT /db_xref="InterPro:IPR004635" FT /db_xref="InterPro:IPR023562" FT /db_xref="UniProtKB/TrEMBL:D2TUK1" FT /protein_id="CBG88055.1" FT /translation="MRTLWRFIAGFFKWTWRLLNFVREMVLNLLFIFLILVGVGIWMQV FT NNGASSEKVARGALLLDISGVIVDKPSSTNRLGVIGRQLFGASSDRLQENSLFDIVNTI FT RQAKDDSNITGIVMDLKDFAGADQPSMQYIGKALREFRDSGKPVYAIGDNFSQGQYYLA FT SFANKIWLTPQGSVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSP FT AAREADSRWIGELWQNYLNTIAANRQITAQQVFPGAQGVLDGLTKVGGDTAKYALDHKL FT VDALLSSSEMEKALSKAFGWSKSDNNYRAISYYDYSLNTPADTGSSVAVVFANGAIMDG FT EETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRSELAAAKAAGKPV FT VVSMGGMAASGGYWISTPASYIVANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVATS FT PLADISMTKALPPEVQQIMQLSIENGYKRFITLVAESRKSTPEQVDKIAQGHVWTGQDA FT KANGLVDSLGDFDDAVAKAAELAKLKQWHIDYYQSEPSFFDMVMDSMSGSVRAMLPQAI FT QAMLPAPLATAASAVKAEGDKLAAFNDPQNRYAFCLTCANMR" FT misc_feature complement(1388251..1388709) FT /gene="sppA" FT /locus_tag="ROD_12921" FT /note="HMMPfam hit to PF01343, Peptidase S49, score FT 1.4e-78" FT /inference="protein motif:PFAM:PF01343" FT misc_feature complement(1388992..1389462) FT /gene="sppA" FT /locus_tag="ROD_12921" FT /note="HMMPfam hit to PF01343, Peptidase S49, score FT 1.1e-57" FT /inference="protein motif:PFAM:PF01343" FT misc_feature complement(1389751..1389819) FT /gene="sppA" FT /locus_tag="ROD_12921" FT /note="1 probable transmembrane helix predicted for FT ROD12921 by TMHMM2.0 at aa 21-43" FT CDS 1390045..1390596 FT /transl_table=11 FT /locus_tag="ROD_12931" FT /product="putative nitroreductase" FT /db_xref="GOA:D2TUK2" FT /db_xref="InterPro:IPR000415" FT /db_xref="UniProtKB/TrEMBL:D2TUK2" FT /protein_id="CBG88056.1" FT /translation="MDALELLVNRRSASRLAEPAPAGEQLQNILRAGMRAPDHKSLQPW FT HFFVIEGERRERFSAVLEKGALAADGDEKAIEKARSAPFRAPLIIAVVAKCQENHKVPL FT WEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCRAQDKIVGFLYLGTP FT QLKASTTINVPDTAPFVTLF" FT misc_feature 1390063..1390530 FT /locus_tag="ROD_12931" FT /note="HMMPfam hit to PF00881, Nitroreductase, score FT 7.9e-47" FT /inference="protein motif:PFAM:PF00881" FT CDS 1390713..1391756 FT /transl_table=11 FT /gene="selD" FT /locus_tag="ROD_12941" FT /product="Selenide,water dikinase" FT /EC_number="2.7.9.3" FT /db_xref="GOA:D2TUK3" FT /db_xref="InterPro:IPR000728" FT /db_xref="InterPro:IPR004536" FT /db_xref="InterPro:IPR010918" FT /db_xref="InterPro:IPR016188" FT /db_xref="InterPro:IPR023061" FT /db_xref="UniProtKB/TrEMBL:D2TUK3" FT /protein_id="CBG88057.1" FT /translation="MSEHAIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLVG FT NETRDDAAVYDLGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMAIA FT ILGWPVSKLSPEIAREVTEGGRFACRQAGIALAGGHSIDAPEPIFGLAVTGVVPTERVK FT KNSTAQAGCKLFLTKPLGIGVLTTAGKKSLLKPEHQGLATEVMCRMNIAGAAFAEIDGV FT KAMTDVTGFGLLGHLSEMCQGAGVQAQIDYQAVPKLPGVEEYIRLGAVPGGTERNFASY FT GHLMGEMPREVRDLLCDPQTSGGLLLAVTPEAVAEVQAAAAKFAIDLTAIGELVEARGG FT RVMVEIR" FT misc_feature 1390731..1391186 FT /gene="selD" FT /locus_tag="ROD_12941" FT /note="HMMPfam hit to PF00586, AIR synthase related FT protein, score 4.9e-11" FT /inference="protein motif:PFAM:PF00586" FT misc_feature 1390737..1390769 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1391217..1391747 FT /gene="selD" FT /locus_tag="ROD_12941" FT /note="HMMPfam hit to PF02769, AIR synthase related FT protein, C-terminal, score 5.1e-23" FT /inference="protein motif:PFAM:PF02769" FT CDS 1391761..1393707 FT /transl_table=11 FT /gene="topB" FT /locus_tag="ROD_12951" FT /product="DNA topoisomerase III" FT /EC_number="5.99.1.2" FT /db_xref="GOA:D2TUK4" FT /db_xref="InterPro:IPR000380" FT /db_xref="InterPro:IPR003601" FT /db_xref="InterPro:IPR003602" FT /db_xref="InterPro:IPR005738" FT /db_xref="InterPro:IPR006171" FT /db_xref="InterPro:IPR013497" FT /db_xref="InterPro:IPR013824" FT /db_xref="InterPro:IPR013825" FT /db_xref="InterPro:IPR023405" FT /db_xref="InterPro:IPR023406" FT /db_xref="UniProtKB/TrEMBL:D2TUK4" FT /protein_id="CBG88058.1" FT /translation="MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHL FT LEQAQPDVYDSRYARWNLSDLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEVVHAGDP FT DREGQLLVDEVLDYLQLAAEKRQQVQRCLINDLNPQAVERAIERLRSNSEFVPLCVSAL FT ARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFIPKDFF FT EVRAHIVTPADERFIAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRINGQPAFVTSYND FT KRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQRLYETHKLITYPRSDCRYLPEEH FT FAGRHAVMNAIGVHAPDLLPQPVVNPDTRNRCWDDKKVDAHHAIIPTARSSTINLSENE FT AKVYNLIARQYLMQFCPDAVFRKCVIELEIAKGKFIAKARFLAEAGWRTLLGSKERDEE FT NDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILR FT ATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWES FT VLTQISEKQCRYQDFMQPLVGTLYQLIDQAKSTPVRRFRGIVAPGGGSSEKKKSAPRKR FT AAKKSPPSAEAGL" FT misc_feature 1391761..1392165 FT /gene="topB" FT /locus_tag="ROD_12951" FT /note="HMMPfam hit to PF01751, TOPRIM, score 9.7e-37" FT /inference="protein motif:PFAM:PF01751" FT misc_feature 1392211..1393452 FT /gene="topB" FT /locus_tag="ROD_12951" FT /note="HMMPfam hit to PF01131, DNA topoisomerase, type IA, FT central, score 2.8e-190" FT /inference="protein motif:PFAM:PF01131" FT misc_feature 1392709..1392756 FT /note="PS00396 Prokaryotic DNA topoisomerase I active FT site." FT /inference="protein motif:Prosite:PS00396" FT repeat_region complement(1393737..1395031) FT /note="Insertion sequence ISCro4. No inverted or direct FT repeats apparent. 1 of 13 100% identical ISCro4 elements in FT CR chromosome" FT CDS complement(1393846..1394826) FT /transl_table=11 FT /locus_tag="ROD_12961" FT /product="ISCro4 transposase" FT /db_xref="GOA:D2TGM5" FT /db_xref="InterPro:IPR002525" FT /db_xref="InterPro:IPR003346" FT /db_xref="InterPro:IPR003583" FT /db_xref="UniProtKB/TrEMBL:D2TGM5" FT /protein_id="CBG88059.1" FT /translation="MEQELHFIGIDVSKAKLDVDVLRPDGRHRSKKFANTPKGHDELLR FT WLSGHRVAPAHICMEATSTYMEDVAAHLSDAGYTVSVINPALGKAFAQSEGLRSKTDAV FT DARMLAEFCRQKRPPAWEAPHPVERALRALVLRHQSLTDMHTQELNRLETAREVQRPSI FT DAHLLWLHAELKRIEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYTGLKERF FT THARQFAAFAGLTPRRYESGSSVNRASRMSKAGHASLRRALYMPAMVAVSKTEWGRAFR FT DRLAGNGKKGKVIIGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA" FT misc_feature complement(1393975..1394241) FT /locus_tag="ROD_12961" FT /note="HMMPfam hit to PF02371, Transposase, FT IS116/IS110/IS902, score 1.2e-27" FT /inference="protein motif:PFAM:PF02371" FT misc_feature complement(1394320..1394610) FT /locus_tag="ROD_12961" FT /note="HMMPfam hit to PF01548, Transposase, FT IS111A/IS1328/IS1533, score 1.2e-17" FT /inference="protein motif:PFAM:PF01548" FT CDS complement(1395093..1396436) FT /transl_table=11 FT /gene="gdhA" FT /locus_tag="ROD_12971" FT /product="NADP-specific glutamate dehydrogenase" FT /EC_number="1.4.1.4" FT /db_xref="GOA:D2TUK6" FT /db_xref="InterPro:IPR006095" FT /db_xref="InterPro:IPR006096" FT /db_xref="InterPro:IPR006097" FT /db_xref="InterPro:IPR014362" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:D2TUK6" FT /protein_id="CBG88060.1" FT /translation="MDQTRSLESFFNHVQKRDPDQTEFAQAVREVMTTLWPFLEQNPRY FT REMSLLERLVEPERVIQFRVVWLDDRNQVQVNRAWRVQFNSAIGPYKGGMRFHPSVNLS FT ILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGPDTD FT VPAGDIGVGGREVGFMAGMMRKLSNNSACVFTGKGLSFGGSLIRPEATGYGLVYFTEAM FT LKRHGLGFEGMRVAVSGSGNVAQYAIEKAMEFGARVVTASDSSGTVVDESGFSKEKLAR FT LCEIKANRDSRLSVYAKEFGLTWLEGKQPWSVPVDIALPCATQNELDVDAARMLIANGV FT KAVAEGANMPTTIEATDLFLDAGVLFAPGKAANAGGVATSGLEMAQNAARLSWKAEKVD FT ARLHHIMLDIHHACVEYGGEDKQTNYVRGANIAGFVKVADAMFGQGVI" FT misc_feature complement(1395102..1395833) FT /gene="gdhA" FT /locus_tag="ROD_12971" FT /note="HMMPfam hit to PF00208, Glu/Leu/Phe/Val FT dehydrogenase, C-terminal, score 1.7e-141" FT /inference="protein motif:PFAM:PF00208" FT misc_feature complement(1395876..1396268) FT /gene="gdhA" FT /locus_tag="ROD_12971" FT /note="HMMPfam hit to PF02812, Glu/Leu/Phe/Val FT dehydrogenase, dimerisation region, score 1.3e-86" FT /inference="protein motif:PFAM:PF02812" FT misc_feature complement(1396032..1396073) FT /note="PS00074 Glu / Leu / Phe / Val dehydrogenases active FT site." FT /inference="protein motif:Prosite:PS00074" FT CDS 1396673..1396948 FT /transl_table=11 FT /locus_tag="ROD_12981" FT /product="putative exported protein" FT /db_xref="InterPro:IPR009971" FT /db_xref="UniProtKB/TrEMBL:D2TUK7" FT /protein_id="CBG88061.1" FT /translation="MRYFVMATALMALSFSTLANPLIRPEVEVNVPPEVFSSGGQRAQP FT CAQCCIYQDRAYSEGAVIKAEGVLLQCQRDERTLSTNPLVWRRVKV" FT sig_peptide 1396673..1396729 FT /locus_tag="ROD_12981" FT /note="Signal peptide predicted for ROD12981 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 19 and 20" FT misc_feature 1396688..1396945 FT /locus_tag="ROD_12981" FT /note="HMMPfam hit to PF07383, Protein of unknown function FT DUF1496, score 7.3e-46" FT /inference="protein motif:PFAM:PF07383" FT CDS complement(1396908..1397321) FT /transl_table=11 FT /gene="nudG" FT /locus_tag="ROD_12991" FT /product="CTP pyrophosphohydrolase" FT /EC_number="3.6.1.-" FT /db_xref="GOA:D2TUK8" FT /db_xref="InterPro:IPR000086" FT /db_xref="InterPro:IPR015797" FT /db_xref="InterPro:IPR020084" FT /db_xref="InterPro:IPR020476" FT /db_xref="UniProtKB/TrEMBL:D2TUK8" FT /protein_id="CBG88062.1" FT /translation="MKTLDVVAAIIERDGKILLAQRPAHADQAGLWEFAGGKVEPGETQ FT PQALARELREELGIEATIGAYIASHQHEVSGRLIHLHAWHVPAFRGELTAHEHQQLAWC FT APVAALDYPLAPADIPLLNAFILSRAARPADSC" FT misc_feature complement(1396938..1397315) FT /gene="nudG" FT /locus_tag="ROD_12991" FT /note="HMMPfam hit to PF00293, NUDIX hydrolase, core, score FT 1.3e-30" FT /inference="protein motif:PFAM:PF00293" FT misc_feature complement(1397154..1397213) FT /note="PS00893 mutT domain signature." FT /inference="protein motif:Prosite:PS00893" FT CDS 1397370..1397969 FT /transl_table=11 FT /locus_tag="ROD_13001" FT /product="putative decarboxylase" FT /db_xref="GOA:D2TUK9" FT /db_xref="InterPro:IPR003779" FT /db_xref="UniProtKB/TrEMBL:D2TUK9" FT /protein_id="CBG88063.1" FT /translation="MSDQKSRESSLNDPQPWVKPLTRLPSGLKPLTMAQKKHYGEVLHP FT TRWWGRMPFLFWLVALFVGFLERRRARLTPEMRALLMSRVSQACHCAFCIDANSLRLAE FT RCGAMDKVLAVAQWQTSALFSAQERVALAYADAVTATPPQVDEALKAQMKQHFSDDEIS FT EMTALLAFQNLSVRFNAALDIPSQGLCDSQKGAPRA" FT misc_feature 1397511..1397567 FT /locus_tag="ROD_13001" FT /note="1 probable transmembrane helix predicted for FT ROD13001 by TMHMM2.0 at aa 48-66" FT misc_feature 1397526..1397780 FT /locus_tag="ROD_13001" FT /note="HMMPfam hit to PF02627, Carboxymuconolactone FT decarboxylase, score 0.0009" FT /inference="protein motif:PFAM:PF02627" FT CDS 1397962..1398585 FT /transl_table=11 FT /locus_tag="ROD_13011" FT /product="putative CDP-alcohol phosphatidyltransferase" FT /db_xref="GOA:D2TUL0" FT /db_xref="InterPro:IPR000462" FT /db_xref="UniProtKB/TrEMBL:D2TUL0" FT /protein_id="CBG88064.1" FT /translation="MLDRHLHPRLKPLLHRCAGLLDRPGFSPDGITLTGFAIGVLALPF FT LALEWYPAALVAIVLNRVLDGLDGALARRRGLSDAGGFLDISLDFLFYALVPFGFILAD FT PQQNALAGGWLLFAFIGTGSSFLAFAALAAKHNIANPGYAHKSFYYLGGLTEGAETIFL FT FVLACLLPHYFAPMAWIFGALCWLTTATRVWSGYLTLKALQRQG" FT misc_feature join(1398073..1398141,1398199..1398267,1398295..1398363, FT 1398400..1398468,1398481..1398549) FT /locus_tag="ROD_13011" FT /note="5 probable transmembrane helices predicted for FT ROD13011 by TMHMM2.0 at aa 38-60, 80-102, 112-134, 147-169 FT and 174-196" FT misc_feature 1398124..1398558 FT /locus_tag="ROD_13011" FT /note="HMMPfam hit to PF01066, CDP-alcohol FT phosphatidyltransferase, score 2.9e-18" FT /inference="protein motif:PFAM:PF01066" FT CDS complement(1398621..1399928) FT /transl_table=11 FT /locus_tag="ROD_13021" FT /product="putative thiosulfate sulfurtransferase" FT /EC_number="2.8.1.1" FT /db_xref="GOA:D2TUL1" FT /db_xref="InterPro:IPR001307" FT /db_xref="InterPro:IPR001763" FT /db_xref="UniProtKB/TrEMBL:D2TUL1" FT /protein_id="CBG88065.1" FT /translation="MKRVSQMTALAMALGLACASSWAEDMAQALNFTQLQQQHGTAIDT FT RQSAFYNGWPQSLNGPSGHEPSALNLSASWLDKMSDQQLDNWLKQHQIKTDTPVALYGS FT NGDIQAVKTRLRQAGLQQIATLSDALQTPAHLQRLAHFEQLVYPQWLHDLQQGKAVTAK FT PAGDWKVIEVAWGAPKFYLLSHIPGASYIDTNEVESEPLWNKVSDADLKAMLAKHGIRH FT DTTMILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQSWSDAGLPVERGTPTQVKPETD FT FGATIPAQPQLMLNTEQARGLLHRQDASLVSIRSWPEFIGVTSGYSYIKPKGEIAGARW FT GHAGSDSTHMEDFHNPDGTMRSADDIAAMWKQWNILPDQQVAFYCGTGWRASETFMYAR FT AMGWQNVAVYDGGWYEWSRDPKNPVARGERGPQSSL" FT misc_feature complement(1398681..1398713) FT /note="PS00683 Rhodanese C-terminal signature." FT /inference="protein motif:Prosite:PS00683" FT misc_feature complement(1399353..1399388) FT /note="PS00380 Rhodanese signature 1." FT /inference="protein motif:Prosite:PS00380" FT sig_peptide complement(1399860..1399928) FT /locus_tag="ROD_13021" FT /note="Signal peptide predicted for ROD13021 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 23 and 24" FT misc_feature complement(1399875..1399907) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT CDS complement(1400015..1400647) FT /transl_table=11 FT /locus_tag="ROD_13031" FT /product="ABC transporter, ATP-binding protein" FT /db_xref="GOA:D2TGQ3" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:D2TGQ3" FT /protein_id="CBG88066.1" FT /translation="MLTVRHLSLALKHTRLCGPLTFDVAKGDIVTLMGPSGCGKSSLMA FT WMVGALSSPLTAEGEMWLDDRRIDLLPTAARQVGILFQDALLFDHFSVGQNLLLALPAG FT VKGASRRDAVLHALEHAGMAGFFSRDPASLSGGQRARIALLRALLAQPRALLLDEPFSR FT LDADRRADFRQWVFAEVRRRNIPVVQVTHDEQDIPSGGRVLYLTPPS" FT misc_feature complement(1400021..1400569) FT /locus_tag="ROD_13031" FT /note="HMMPfam hit to PF00005, ABC transporter related, FT score 1.8e-34" FT /inference="protein motif:PFAM:PF00005" FT misc_feature complement(1400204..1400248) FT /note="PS00211 ABC transporters family signature." FT /inference="protein motif:Prosite:PS00211" FT misc_feature complement(1400525..1400548) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS complement(1400647..1402134) FT /transl_table=11 FT /locus_tag="ROD_13041" FT /product="putative membrane protein" FT /db_xref="GOA:D2TGQ4" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:D2TGQ4" FT /protein_id="CBG88067.1" FT /translation="MAVVYSPLPPAAFLLLRPAFSLANWQALFADPQLPQALLATLVSV FT LIAAAGALFIALAIVVAIWPGDKWRQLSRRLPWLLAIPHVAFASAALLLFADGGLLWRA FT LPFLTPPMDGYAIGMGVTLAVKESAFVLWVLAVVLSEKRLTQHMVVLDSLGYSRWQALR FT WLILPATAPALGAIMLAVIAWTLSTVDVAMILGPGNPPTLAVLSWQWLSQGDSAQQIKG FT TLASLLLALLPIVFALPAYLFWRSWRRTFLDVSGLRQRHSPALAGGILTRLLPLTGLLC FT AVVLAATATHSALDREALNNSLLSGIIASVLALIILLLWLEWGPQRGHRWVWLPIFLPA FT LPLVAGQYAIALRLGQDGLYTTLIWGHLLWVTPWMLFVLKPAWQSIDPRLVLVAQTLGW FT SPLRIFCYLKCPLMLRPALAALAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGS FT SGIMAAQALWQMLLPLLVFMLAGGISHWVGRARQGLR" FT misc_feature complement(join(1400671..1400739,1400833..1400901, FT 1400998..1401057,1401085..1401144,1401163..1401231, FT 1401274..1401342,1401403..1401471,1401577..1401645, FT 1401724..1401792,1401850..1401909,1401943..1402011)) FT /locus_tag="ROD_13041" FT /note="11 probable transmembrane helices predicted for FT ROD13041 by TMHMM2.0 at aa 42-64, 76-95, 115-137, 164-186, FT 222-244, 265-287, 302-324, 331-350, 360-379, 412-434 and FT 466-488" FT sig_peptide complement(1402066..1402134) FT /locus_tag="ROD_13041" FT /note="Signal peptide predicted for ROD13041 by SignalP 2.0 FT HMM (Signal peptide probability 0.623) with cleavage site FT probability 0.574 between residues 23 and 24" FT CDS complement(1402155..1403318) FT /transl_table=11 FT /locus_tag="ROD_13051" FT /product="putative exported protein" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:D2TGQ5" FT /protein_id="CBG88068.1" FT /translation="MRWGYVIAGLLLSAQLHAAESWQQIKEEAKGQTVWFNAWGGDSAI FT NRYLDWVSGEMKTHYAIDLKIVHLADAADAVRRIQTEAAAGRKSGGSVDLLWVNGENFR FT TLKQAGLLQSHWAETLPDWRYVDTQKPVREDFSIPTDGAESPWGGAQLTFIADRKVTPQ FT PPQSPQALLAFAKAHPGAVSYPRPPDFTGTAFLEQLLISLTRRPEALNTAPDNASFTEV FT TAPLWHYLDALHPYLWRQGKDFPPTPARMDTLLNSGTLRLSMTFNPAHAQQKIASGELP FT ASSYSFGFSTGMIGNVHFVTIPANARASAGAKVVANFLLSPQAQLRKADPTIWGDPSVL FT DPQKLPAAQREALAAYTPAGLPAVLPEPHAAWVNALEQEWLRRYGTR" FT sig_peptide complement(1403265..1403318) FT /locus_tag="ROD_13051" FT /note="Signal peptide predicted for ROD13051 by SignalP 2.0 FT HMM (Signal peptide probability 0.999) with cleavage site FT probability 0.999 between residues 18 and 19" FT CDS complement(1403321..1403995) FT /transl_table=11 FT /locus_tag="ROD_13061" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR015414" FT /db_xref="UniProtKB/TrEMBL:D2TGQ6" FT /protein_id="CBG88069.1" FT /translation="MKSKKRLLTGLIVLCIVGVVWAMPPGLLTLETIRRNHSLLADWQR FT QSPFLCAALYFLLYTAVAALSVPGAALLTLLGGALFGLCQGALLVSFASTLGATLAMLA FT SRYLLREQVTRRFSRQMAALNRGMARDGVFYLFALRLMPLFPFVMVNLLAGLTTVGVRR FT YWWVSQLGMLPATLVYLNAGRQLSQLTSMREILSPAMLAAFALLGLLPLASRWLATRFI FT QE" FT misc_feature complement(join(1403345..1403413,1403450..1403503, FT 1403531..1403599,1403669..1403737,1403780..1403848, FT 1403909..1403968)) FT /locus_tag="ROD_13061" FT /note="6 probable transmembrane helices predicted for FT ROD13061 by TMHMM2.0 at aa 10-29, 50-72, 87-109, 133-155, FT 165-182 and 195-217" FT misc_feature complement(1403441..1403797) FT /locus_tag="ROD_13061" FT /note="HMMPfam hit to PF09335, SNARE associated Golgi FT protein, score 3.3e-47" FT /inference="protein motif:PFAM:PF09335" FT sig_peptide complement(1403930..1403995) FT /locus_tag="ROD_13061" FT /note="Signal peptide predicted for ROD13061 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT CDS complement(1404005..1404811) FT /transl_table=11 FT /gene="xthA" FT /locus_tag="ROD_13071" FT /product="exodeoxyribonuclease III" FT /EC_number="3.1.11.2" FT /db_xref="GOA:D2TGQ7" FT /db_xref="InterPro:IPR000097" FT /db_xref="InterPro:IPR004808" FT /db_xref="InterPro:IPR005135" FT /db_xref="InterPro:IPR020847" FT /db_xref="InterPro:IPR020848" FT /db_xref="UniProtKB/TrEMBL:D2TGQ7" FT /protein_id="CBG88070.1" FT /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLE FT DVARLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPDDGEEAQRRIIMAELPSPLGNVT FT VINGYFPQGESRDHPLKFPAKAQFYQNLQNYLDSELKRDNPVLIMGDMNISPSDRDIGI FT GEENRRRWLRTGKCSFLPEEREWMDRLLNWGLVDTFRHAHPETNDKFSWFDYRSKGFDD FT NRGLRIDLLLASQPLAERCVETGIDYAIRGMEKPSDHAPVWAKFDV" FT misc_feature complement(1404014..1404811) FT /gene="xthA" FT /locus_tag="ROD_13071" FT /note="HMMPfam hit to PF03372, FT Endonuclease/exonuclease/phosphatase, score 1e-52" FT /inference="protein motif:PFAM:PF03372" FT misc_feature complement(1404110..1404145) FT /note="PS00728 AP endonucleases family 1 signature 3." FT /inference="protein motif:Prosite:PS00728" FT misc_feature complement(1404173..1404223) FT /note="PS00727 AP endonucleases family 1 signature 2." FT /inference="protein motif:Prosite:PS00727" FT misc_feature complement(1404704..1404733) FT /note="PS00726 AP endonucleases family 1 signature 1." FT /inference="protein motif:Prosite:PS00726" FT CDS complement(1404942..1405202) FT /transl_table=11 FT /locus_tag="ROD_13081" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TGQ8" FT /protein_id="CBG88071.1" FT /translation="MRCKCRLQTSCQPEEKCINESRKRKINGLKPDDMHFYCIKSEYIY FT RKEELMDENLKYYAKTKYNSGFVIACEIYRKVLPHCAALCP" FT CDS 1405256..1406476 FT /transl_table=11 FT /gene="astC" FT /locus_tag="ROD_13091" FT /product="succinylornithine transaminase" FT /EC_number="2.6.1.81" FT /db_xref="GOA:D2TGQ9" FT /db_xref="InterPro:IPR004636" FT /db_xref="InterPro:IPR005814" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015422" FT /db_xref="InterPro:IPR015424" FT /db_xref="InterPro:IPR017652" FT /db_xref="UniProtKB/TrEMBL:D2TGQ9" FT /protein_id="CBG88072.1" FT /translation="MSQSITRENFDEWMMPVYAPAPFIPVRGEGSRLWDQQGNEYIDFA FT GGIAVNALGHAHPQLREALNEQASRFWHTGNGYTNEPALRLAKKLIDATFADRVFFCNS FT GAEANEAALKLARKYAHDRYGSDKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPP FT EIRHAVYNDINSASTLIDDTTCAVIVEPMQGEGGVVPATPAFLQGLRELCDRHNALLIF FT DEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGGFPIGALLASEKCASVMTVGTHGTT FT YGGNPLATAVAGTLLDIVNTPDMLNGVKQRHAWFVERLNAINLRTGLFSEIRGLGLLIG FT CVLSAEYAGKAKQISQYAASAGVMVLIAGANVVRFAPALNISEEEVASGLDRFALACEQ FT IKAGGSS" FT misc_feature 1405325..1406290 FT /gene="astC" FT /locus_tag="ROD_13091" FT /note="HMMPfam hit to PF00202, Aminotransferase class-III, FT score 3.9e-147" FT /inference="protein motif:PFAM:PF00202" FT misc_feature 1405913..1406026 FT /note="PS00600 Aminotransferases class-III FT pyridoxal-phosphate attachment site." FT /inference="protein motif:Prosite:PS00600" FT CDS 1406473..1407507 FT /transl_table=11 FT /gene="astA" FT /locus_tag="ROD_13101" FT /product="arginine N-succinyltransferase" FT /EC_number="2.3.1.109" FT /db_xref="GOA:D2TGR0" FT /db_xref="InterPro:IPR007041" FT /db_xref="InterPro:IPR016181" FT /db_xref="InterPro:IPR017650" FT /db_xref="UniProtKB/TrEMBL:D2TGR0" FT /protein_id="CBG88073.1" FT /translation="MMVIRPVERADVAALMQLAGKTGGGLTSLPADEATLVARIERSLK FT TWRNELPNSEQGFVFVLEDTETGTVGGICAIEVAVGLNDPWYNYRVGTLVHASKELNVY FT NALPTLFLSNDHTGSSELCTLFLDPAWRKEGNGYLLSKSRFMFMAAFRDRFNEKVVAEM FT RGVIDENGYSPFWQSLGKRFFSMEFKRADYLCGTGQKAFIAELMPKHPIYTHFLSPQAQ FT AVIGEVHPQTAPARAVLEKEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVEVAEGQ FT PAAGDFPACLVANENYHNFRVMLVRADPDMQRLVLTAAQLDALKCQAGARVRFVRLCAE FT EKTV" FT misc_feature 1406473..1407483 FT /gene="astA" FT /locus_tag="ROD_13101" FT /note="HMMPfam hit to PF04958, Arginine FT N-succinyltransferase beta subunit, score 3.4e-236" FT /inference="protein motif:PFAM:PF04958" FT CDS 1407504..1408982 FT /transl_table=11 FT /gene="astD" FT /locus_tag="ROD_13111" FT /product="N-succinylglutamate 5-semialdehyde dehydrogenase" FT /EC_number="1.2.1.71" FT /db_xref="GOA:D2TGR1" FT /db_xref="InterPro:IPR015590" FT /db_xref="InterPro:IPR016160" FT /db_xref="InterPro:IPR016161" FT /db_xref="InterPro:IPR016162" FT /db_xref="InterPro:IPR016163" FT /db_xref="InterPro:IPR017649" FT /db_xref="UniProtKB/TrEMBL:D2TGR1" FT /protein_id="CBG88074.1" FT /translation="MTLWINGDWVTGQGERRVKQDPVKGDVLWQGHDADAAQVMQAAHA FT ARAAFPGWARRPFSERQAIVEKFAALLTENKTQLTEIIARETGKPRWEAATEVTAMINK FT IAISVQAYHARAGERHSELPDGAATLRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGN FT TLLFKPSELTPWSAEAVVKLWQQAGLPHGVLNLLQGGRETGQALSALDTLDGLLFTGSA FT STGYQLHRQLAGQPEKILALEMGGNNPLIVENPADIDAAMHLTIQSAFITAGQRCTCAR FT RLLVKKGAQGDAFLARLVAVSQRIQPGRWDAGPQPFIGGLISAQAARQVYDAWQRLAAL FT GGRTLLAPRLIEEGTSLLSPGIIELSGVANVPDEEVFGPLLGVWRYDSFADAIALANAT FT RYGLSCGLISPDRAQFDQLLLEARAGIVNWNKPLTGAASTAPFGGVGASGNHRPSAWYA FT ADYCAWPMASLESPALSLPETLSPGLDFSHEDAV" FT misc_feature 1407528..1408904 FT /gene="astD" FT /locus_tag="ROD_13111" FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase, FT score 3.2e-114" FT /inference="protein motif:PFAM:PF00171" FT misc_feature 1408227..1408250 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT /inference="protein motif:Prosite:PS00687" FT misc_feature 1408311..1408346 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT /inference="protein motif:Prosite:PS00070" FT CDS 1408979..1410322 FT /transl_table=11 FT /gene="astB" FT /locus_tag="ROD_13121" FT /product="N-succinylarginine dihydrolase" FT /EC_number="3.5.3.23" FT /db_xref="GOA:D2TGR2" FT /db_xref="InterPro:IPR007079" FT /db_xref="UniProtKB/TrEMBL:D2TGR2" FT /protein_id="CBG88075.1" FT /translation="MRAREVNFDGLVGPTHHYAGLSYGNVASVQHRFQVSNPRLAAKQG FT LLKMKALADAGYPQGVIPPHERPFIPALRQLGFRGSDEQIVENVARQAPQWLSSVSSAS FT PMWVANAATVAPSADTLDGKVHLTVANLNNKFHRSLEAPTTEALLRAIFRDEAYFTVHP FT ALPQVAMFGDEGAANHNRLGAEYGEPGIQLFVYGREEGNRTRPSRYPARQTREASEAVA FT RLNQVNPQQALFVQQHPEVIDLGVFHNDVIAVANREVLFCHEQAFARQEEVLRQLRLRV FT PGFTPVVVPASDVSVSDAVSTYLFNSQLLSREDGTMLLVLPQECRDHAGVWRYLSHLLE FT ADTPIRDMRVFDLRESMSNGGGPACLRLRVVLTAEQQLAVNPAVMMNDTLFDTLNDWVD FT RYYRDRLTAADLADPQLLREGREALDTLTQLLQLGSVYPFQQTGGEHG" FT misc_feature 1408979..1410319 FT /gene="astB" FT /locus_tag="ROD_13121" FT /note="HMMPfam hit to PF04996, Succinylarginine FT dihydrolase, score 0" FT /inference="protein motif:PFAM:PF04996" FT CDS 1410315..1411283 FT /transl_table=11 FT /gene="astE" FT /locus_tag="ROD_13131" FT /product="succinylglutamate desuccinylase" FT /EC_number="3.5.1.96" FT /db_xref="GOA:D2TGR3" FT /db_xref="InterPro:IPR007036" FT /db_xref="InterPro:IPR016681" FT /db_xref="UniProtKB/TrEMBL:D2TGR3" FT /protein_id="CBG88076.1" FT /translation="MDNFLAATLGGTMPEGKEGAKAHFHWRWTQPGVLELIPQAATEGA FT LVISAGIHGNETAPVEMLDALLRALSRGEIALRWRLLVILGNPQALAEGKRYCHSDMNR FT MFGGRWRQFARSGETLRARQLERCLEDFWSGTAASRRWHLDLHTAIRGSHHLRFGVLPQ FT RLEPWDEAFLAWLGAAGLEALVFHQTPGGTFTHFSAEHFGALSCTLELGKALPFGQNDL FT RQFTPTADALSALLRGELVTTRGAAPVRYRVVSQITRRSEAFILHMDSQTLNFTPFSEG FT ALLAEDGDERFFATHPVEYVLFPNPGVAPGLRAGLMLEKIA" FT misc_feature 1410438..1411280 FT /gene="astE" FT /locus_tag="ROD_13131" FT /note="HMMPfam hit to PF04952, Succinylglutamate FT desuccinylase/aspartoacylase, score 2.8e-83" FT /inference="protein motif:PFAM:PF04952" FT CDS 1411632..1412117 FT /transl_table=11 FT /gene="spy" FT /locus_tag="ROD_13141" FT /product="spheroplast protein Y" FT /db_xref="GOA:D2TGR4" FT /db_xref="InterPro:IPR012899" FT /db_xref="UniProtKB/TrEMBL:D2TGR4" FT /protein_id="CBG88077.1" FT /translation="MRKLTALFVASTLALGAANLAHAADTTSAAPADAKPMMHHKGKFG FT PHHDMMFKDLNLTDAQKQQIRDIMKDKRDQMKRPSADERRAMHDIIASDSFDKAKAEAQ FT IAKMEEQRKANMLAHLETQNKIYNILTPEQKKQFNANFEKRLTERPAHDGKMPVPAE" FT sig_peptide 1411632..1411700 FT /gene="spy" FT /locus_tag="ROD_13141" FT /note="Signal peptide predicted for ROD13141 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 23 and 24" FT misc_feature 1411770..1411838 FT /gene="spy" FT /locus_tag="ROD_13141" FT /note="HMMPfam hit to PF07813, Region of unknown function, FT Spy-related, score 2.1e-05" FT /inference="protein motif:PFAM:PF07813" FT misc_feature 1411989..1412057 FT /gene="spy" FT /locus_tag="ROD_13141" FT /note="HMMPfam hit to PF07813, Region of unknown function, FT Spy-related, score 0.002" FT /inference="protein motif:PFAM:PF07813" FT CDS complement(1412282..1413169) FT /transl_table=11 FT /gene="cho" FT /locus_tag="ROD_13151" FT /product="excinuclease Cho" FT /EC_number="3.1.25.-" FT /db_xref="GOA:D2TGR5" FT /db_xref="InterPro:IPR000305" FT /db_xref="UniProtKB/TrEMBL:D2TGR5" FT /protein_id="CBG88078.1" FT /translation="MVRRQSAPRLEFEAAAIYEYPEHLRPFLEALPSVPGVYLFHGESE FT AMPLYIGKSVNIRSRVLSHLRTADEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQP FT LFNKRLRRNRQLCALRLANGQVEVVYAREVDFSHAPNLFGLFANRRAALQALQTLADEQ FT KLCYGLLGLEPLSRGRACFRSALKRCAGACCGRESPDDHAARLQAALEKLRVVCWPWKS FT AIALKESRPQMTQYHIINNWLWLGAVETLENVATLVQTPAGFDHDGYKILCKPLISGAC FT EIIELGPEHMPPIS" FT misc_feature complement(1412831..1413070) FT /gene="cho" FT /locus_tag="ROD_13151" FT /note="HMMPfam hit to PF01541, Excinuclease ABC, C subunit, FT N-terminal, score 1e-13" FT /inference="protein motif:PFAM:PF01541" FT CDS complement(1413287..1414114) FT /transl_table=11 FT /gene="nadE" FT /locus_tag="ROD_13161" FT /product="NH3-dependent NAD(+) synthetase" FT /EC_number="6.3.1.5" FT /db_xref="GOA:D2TGR6" FT /db_xref="InterPro:IPR003694" FT /db_xref="InterPro:IPR014729" FT /db_xref="InterPro:IPR022310" FT /db_xref="InterPro:IPR022926" FT /db_xref="UniProtKB/TrEMBL:D2TGR6" FT /protein_id="CBG88079.1" FT /translation="MSLQQEIIQALGAKPHINPQEEIRRSVDFLKAYLQRYSFLKSLVL FT GISGGQDSTLAGKLCQMAITELRQETGNAALQFIAVRLPYGVQFDEQDCQDALEFIQPD FT RVLTVNIKSAVLASEQALRDAGIELSDFVRGNEKARERMKAQYSIAGMTGGVVVGTDHA FT AEAITGFFTKYGDGGTDINPLFRLNKRQGKQLLAALGCPEHLYKKAPTADLEDDRPSLP FT DEAALGVSYDNIDDYLEGKAIDPAIASIIEGWYLKTEHKRRPPITVFDDFWKQ" FT misc_feature complement(1413320..1414051) FT /gene="nadE" FT /locus_tag="ROD_13161" FT /note="HMMPfam hit to PF02540, NAD+ synthase, score FT 2.4e-129" FT /inference="protein motif:PFAM:PF02540" FT CDS 1414333..1414674 FT /transl_table=11 FT /gene="osmE" FT /locus_tag="ROD_13171" FT /product="osmotically inducible lipoprotein E" FT /db_xref="GOA:D2TGR7" FT /db_xref="InterPro:IPR007450" FT /db_xref="UniProtKB/TrEMBL:D2TGR7" FT /protein_id="CBG88080.1" FT /translation="MNKNLAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSR FT TQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEY FT DTDPQAPKQ" FT sig_peptide 1414333..1414401 FT /gene="osmE" FT /locus_tag="ROD_13171" FT /note="Signal peptide predicted for ROD13171 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.984 between residues 23 and 24" FT misc_feature 1414345..1414404 FT /gene="osmE" FT /locus_tag="ROD_13171" FT /note="1 probable transmembrane helix predicted for FT ROD13171 by TMHMM2.0 at aa 5-24" FT misc_feature 1414363..1414395 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT /inference="protein motif:Prosite:PS00013" FT misc_feature 1414393..1414623 FT /gene="osmE" FT /locus_tag="ROD_13171" FT /note="HMMPfam hit to PF04355, SmpA/OmlA, score 1.3e-21" FT /inference="protein motif:PFAM:PF04355" FT misc_feature 1414459..1414524 FT /note="Predicted helix-turn-helix motif with score FT 1071.000, SD 2.83 at aa 43-64, sequence FT MSRTQVAQIAGKPSSEVSMIHA" FT CDS 1414957..1415292 FT /transl_table=11 FT /gene="chbB" FT /locus_tag="ROD_13181" FT /product="N,N'-diacetylchitobiose-specific PTS syetem, EIIB FT component" FT /EC_number="2.7.1.69" FT /db_xref="GOA:D2TGR8" FT /db_xref="InterPro:IPR003501" FT /db_xref="InterPro:IPR013012" FT /db_xref="InterPro:IPR014350" FT /db_xref="UniProtKB/TrEMBL:D2TGR8" FT /protein_id="CBG88081.1" FT /translation="MRMVFMEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFP FT ETLAGEKGPAADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAA FT IKKAAAN" FT sig_peptide 1414957..1415052 FT /gene="chbB" FT /locus_tag="ROD_13181" FT /note="Signal peptide predicted for ROD13181 by SignalP 2.0 FT HMM (Signal peptide probability 0.637) with cleavage site FT probability 0.501 between residues 32 and 33" FT misc_feature 1414984..1415265 FT /gene="chbB" FT /locus_tag="ROD_13181" FT /note="HMMPfam hit to PF02302, Phosphotransferase system, FT lactose/cellobiose-specific IIB subunit, score 7.6e-25" FT /inference="protein motif:PFAM:PF02302" FT CDS 1415375..1416637 FT /transl_table=11 FT /gene="chbC" FT /locus_tag="ROD_13191" FT /product="N,N'-diacetylchitobiose-specific PTS system, EIIC FT component" FT /db_xref="GOA:D2TGR9" FT /db_xref="InterPro:IPR003352" FT /db_xref="InterPro:IPR004501" FT /db_xref="InterPro:IPR004796" FT /db_xref="UniProtKB/TrEMBL:D2TGR9" FT /protein_id="CBG88082.1" FT /translation="MSNVIASLEKVLLPFAVKIGKQPHVNAIKNGFIRLMPLTLAGAMF FT VLINNVFLSFGEGSFFYSLGVRLDASTIENLNSLKGIGGNVYNGTLGIMSLMAPFFIGM FT ALAEERKVDALAAGLLSVAAFMTVTPYSVGEAYAVGANWLGGANIISGIIIGLVVAELF FT TFIVRRNWVIKLPDSVPASVSRSFSALIPGFIILSIMGIIAWALNTWGTNFHQIIMDTI FT STPLASLGSVVGWAYVIFVPLLWFFGIHGSLALTALDSGIMTPWALENIAIYQQYGSVD FT AALAAGKTFHIWAKPMLDSYIFLGGSGATLGLIIAIFIASRRADYRQVAKLALPSGIFQ FT INEPILFGLPIIMNPVMFIPFILVQPILAAITLVAYYLGIIPPITNIAPWTMPTGLGPS FT LTPTAASPLCWLRCSTLASRP" FT misc_feature 1415459..1416469 FT /gene="chbC" FT /locus_tag="ROD_13191" FT /note="HMMPfam hit to PF02378, Phosphotransferase system, FT EIIC, score 1.1e-59" FT /inference="protein motif:PFAM:PF02378" FT misc_feature join(1415465..1415533,1415627..1415695,1415714..1415773, FT 1415801..1415869,1415927..1415995,1416053..1416121, FT 1416266..1416334,1416440..1416508) FT /gene="chbC" FT /locus_tag="ROD_13191" FT /note="8 probable transmembrane helices predicted for FT ROD13191 by TMHMM2.0 at aa 31-53, 85-107, 114-133, 143-165, FT 185-207, 227-249, 298-320 and 356-378" FT misc_feature 1416218..1416241 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT /inference="protein motif:Prosite:PS00017" FT CDS 1416785..1417135 FT /transl_table=11 FT /gene="chbA" FT /locus_tag="ROD_13201" FT /product="N,N'-diacetylchitobiose-specific PTS system, EIIA FT component" FT /EC_number="2.7.1.-" FT /db_xref="GOA:D2TGS0" FT /db_xref="InterPro:IPR003188" FT /db_xref="UniProtKB/TrEMBL:D2TGS0" FT /protein_id="CBG88083.1" FT /translation="MMDLDNITDTQSEAEELEEVVMGLIINSGQARSLAYAALKQAKQG FT DFEAAKTMMEQSRLALNEAHLVQTKLIEGDQGEGKMKVSLVLVHAQDHLMTSMLARELV FT SELIELHEKLSK" FT misc_feature 1416836..1417123 FT /gene="chbA" FT /locus_tag="ROD_13201" FT /note="HMMPfam hit to PF02255, Phosphotransferase system, FT lactose/cellobiose-specific IIA subunit, score 7.8e-50" FT /inference="protein motif:PFAM:PF02255" FT CDS 1417143..1417991 FT /transl_table=11 FT /gene="chbR" FT /locus_tag="ROD_13211" FT /product="chb operon repressor" FT /db_xref="GOA:D2TGS1" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR011051" FT /db_xref="InterPro:IPR012287" FT /db_xref="InterPro:IPR013096" FT /db_xref="InterPro:IPR014710" FT /db_xref="InterPro:IPR018060" FT /db_xref="InterPro:IPR018062" FT /db_xref="InterPro:IPR020449" FT /db_xref="UniProtKB/TrEMBL:D2TGS1" FT /protein_id="CBG88084.1" FT /translation="MMQLQATATAPEITVAHEQQLFNGKNFHVFIYNKTESACGLHQHD FT YYEFTLVLTGRYYQEINGKRVLLERGDFVFIPLGSHHQSFYEFGSTRILNVGISKHFFE FT QHYSPLMPYCFVASQVYRINSAFLTYVETVVASLNFRDTGLEEFVEVVTFYIINRLRHY FT REEQVPDDIPQWLKATVETMHNKEQFGENALENMIALSAKSQEYLTRATQRYYRKTPMQ FT LINEIRINFAKKQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKMTSFTPNSYRKKLTQYS FT Q" FT misc_feature 1417224..1417433 FT /gene="chbR" FT /locus_tag="ROD_13211" FT /note="HMMPfam hit to PF07883, Cupin 2, conserved barrel, FT score 1.1e-05" FT /inference="protein motif:PFAM:PF07883" FT misc_feature 1417824..1417952 FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT /inference="protein motif:Prosite:PS00041" FT misc_feature 1417833..1417967 FT /gene="chbR" FT /locus_tag="ROD_13211" FT /note="HMMPfam hit to PF00165, Helix-turn-helix, AraC type, FT score 8.8e-13" FT /inference="protein motif:PFAM:PF00165" FT CDS 1418113..1419468 FT /transl_table=11 FT /gene="chbF" FT /locus_tag="ROD_13221" FT /product="6-phospho-beta-glucosidase" FT /EC_number="3.2.1.86" FT /db_xref="GOA:D2TGS2" FT /db_xref="InterPro:IPR001088" FT /db_xref="InterPro:IPR015955" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR019802" FT /db_xref="InterPro:IPR022616" FT /db_xref="UniProtKB/TrEMBL:D2TGS2" FT /protein_id="CBG88085.1" FT /translation="MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVTELWLVDVEGGE FT EKLAIIYNLCQRMIAKAGVPMKVFKTLDRREALKDADFVTTQLRVGQLKARELDERIPL FT SHGYLGQETNGAGGLFKGLRTIPVIFDIIKDVEELCPNAWVINFTNPAGMVTEAVYRHT FT GFKRFIGVCNIPVGMKMFISDVLALTEHDALSIDLFGLNHMVFIKDVFVNGQSRFAELL FT DGVASGQLKASGVKNIFDLPFSEGLIRSLNLLPCSYLLYYFKQKEMLAIEMGEYYKGGA FT RAQVVQKVEKQLFELYKNPELNVKPKELEQRGGAYYSDAACEVINAIFNDKQTEHYVNI FT PHHGHVDNIPADWAVEMTCTLGRDGAKPHPRITHFDEKVLGLIYTIKGFEVAASKAALS FT GEFNDVLLALNLSPLVHSDRDAETLARELILAHETWLPNFAGCIEQLKGAQR" FT misc_feature 1418128..1419357 FT /gene="chbF" FT /locus_tag="ROD_13221" FT /note="HMMPfam hit to PF02056, Glycoside hydrolase, family FT 4, score 1e-219" FT /inference="protein motif:PFAM:PF02056" FT misc_feature 1418533..1418628 FT /note="PS01324 Glycosyl hydrolases family 4 signature." FT /inference="protein motif:Prosite:PS01324" FT CDS 1419480..1420238 FT /transl_table=11 FT /gene="chbG" FT /locus_tag="ROD_13231" FT /product="putative chitobiose-phosphate hydrolase" FT /db_xref="GOA:D2TGS3" FT /db_xref="InterPro:IPR002509" FT /db_xref="InterPro:IPR006879" FT /db_xref="InterPro:IPR022948" FT /db_xref="UniProtKB/TrEMBL:D2TGS3" FT /protein_id="CBG88086.1" FT /translation="MERVLIVNADDFGLSKGQNYGIVEACRHGVVTSTTALVNGDAIEH FT AAQLSRELPTLAVGMHFVLTLGKPLSEMPGLAREGRLGKWIWQMAEEDTLPLDEIAHEL FT ECQYQRFIDLFGREPVHLDSHHHVHMFPQIFPLVARFAAERGVALRIDRRLVPQDAELP FT ATLRSSQEFSSDFYGEEISEALFLEVLDASAAREEASLEVMCHPAFIDNTLRQSAYCYP FT RLTELEVLTSASLKYAIAERGYRLGSFLNV" FT misc_feature 1419486..1420205 FT /gene="chbG" FT /locus_tag="ROD_13231" FT /note="HMMPfam hit to PF04794, YdjC-like protein, score FT 8.6e-111" FT /inference="protein motif:PFAM:PF04794" FT CDS complement(1420289..1422562) FT /transl_table=11 FT /gene="katE" FT /locus_tag="ROD_13241" FT /product="catalase HPII" FT /EC_number="1.11.1.6" FT /db_xref="GOA:D2TGS4" FT /db_xref="InterPro:IPR002226" FT /db_xref="InterPro:IPR010582" FT /db_xref="InterPro:IPR011614" FT /db_xref="InterPro:IPR018028" FT /db_xref="InterPro:IPR020835" FT /db_xref="InterPro:IPR024708" FT /db_xref="InterPro:IPR024712" FT /db_xref="UniProtKB/TrEMBL:D2TGS4" FT /protein_id="CBG88087.1" FT /translation="METSSMSHNEKNPHPHQSPVHDTRESQPGLGSLAPEDGSHRPSPE FT PTPPGAQPTAPGSLKSPDTGNEKLNDLESVRKGSENFALTTNQGVRIADDQNSLRAGSR FT GPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYRDLSDITKAAFLCDPDKI FT TPVFVRFSTVQGNAGSADTVRDIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFV FT HAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTF FT RLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELWEAIEAGDFPEYEL FT GFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGH FT IVPGIDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYHNFQRDGMHRMDID FT TNPANYEPNSINDNWPRETPPAPKRGGFETYQERVDGNKIRERSPSFGEYYAHPRLFWL FT SQTPVEQLHIVDAFSFELSKVVRTYIRERVVDQLAHIDVNLAQAVGKNLGIELTPEQTQ FT IAPPPDVNGLKKDPSLSLYAIPDGDIKGRVVGILLNGKVKSADLLTILQALKAKGVHAK FT LLYSRMGEVVADDGSTLTIAATFAGAPSLTVDAVIVPCGDIADIENSGDARYYLLEAYK FT HLKPIALAGDARRFKAVLNVDSQGEEGIVEADSADSHFMDTLFTLMAGHRVWSRTGKVP FT LVPA" FT misc_feature complement(1420850..1421011) FT /gene="katE" FT /locus_tag="ROD_13241" FT /note="HMMPfam hit to PF06628, Catalase-related, score FT 8.1e-29" FT /inference="protein motif:PFAM:PF06628" FT misc_feature complement(1421144..1422310) FT /gene="katE" FT /locus_tag="ROD_13241" FT /note="HMMPfam hit to PF00199, Catalase, N-terminal, score FT 8.8e-284" FT /inference="protein motif:PFAM:PF00199" FT misc_feature complement(1421294..1421320) FT /note="PS00437 Catalase proximal heme-ligand signature." FT /inference="protein motif:Prosite:PS00437" FT misc_feature complement(1422152..1422202) FT /note="PS00438 Catalase proximal active site signature." FT /inference="protein motif:Prosite:PS00438" FT CDS 1422750..1423004 FT /transl_table=11 FT /gene="cedA" FT /locus_tag="ROD_13251" FT /product="cell division activator" FT /db_xref="GOA:D2TGS5" FT /db_xref="InterPro:IPR019666" FT /db_xref="UniProtKB/TrEMBL:D2TGS5" FT /protein_id="CBG88088.1" FT /translation="MKQLMMKPLRQQNRPVISYVPRVEPAPPEHAIKMDAFRDVWILRG FT KYVAFVLLGESFQRSPAFTVPESAQRWANQVRQENEIAG" FT CDS complement(1423062..1424453) FT /transl_table=11 FT /locus_tag="ROD_13261" FT /product="putative sodium:dicarboxylate symporter" FT /db_xref="GOA:D2TGS6" FT /db_xref="InterPro:IPR001991" FT /db_xref="UniProtKB/TrEMBL:D2TGS6" FT /protein_id="CBG88089.1" FT /translation="MNFPLIANIVVFVILLLALAQTRHKQWSLAKKVLVGLVIGVVFGL FT ALHTVYGSDSPVLKDSIQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLGKI FT SLLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIETNYVGKVADLSV FT PQLVLSFVPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLTAIDTL FT QSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLAIMFIVHGVL FT LGINGVSPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFAASFGAT FT IGQNGCAGLYPAMLAVMVAPTVGINPLDPVWIATLVGIVTVSSAGVAGVGGGATFAALI FT VLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKTILDSEDDA FT ELAHR" FT misc_feature complement(1423125..1424369) FT /locus_tag="ROD_13261" FT /note="HMMPfam hit to PF00375, Sodium:dicarboxylate FT symporter, score 8.4e-113" FT /inference="protein motif:PFAM:PF00375" FT misc_feature complement(join(1423203..1423271,1423281..1423349, FT 1423368..1423436,1423608..1423676,1423848..1423916, FT 1424073..1424141,1424175..1424243,1424301..1424357, FT 1424394..1424441)) FT /locus_tag="ROD_13261" FT /note="9 probable transmembrane helices predicted for FT ROD13261 by TMHMM2.0 at aa 5-20, 33-51, 71-93, 105-127, FT 180-202, 260-282, 340-362, 369-391 and 395-417" FT sig_peptide complement(1424394..1424453) FT /locus_tag="ROD_13261" FT /note="Signal peptide predicted for ROD13261 by SignalP 2.0 FT HMM (Signal peptide probability 0.926) with cleavage site FT probability 0.616 between residues 20 and 21" FT CDS complement(1424588..1425175) FT /transl_table=11 FT /locus_tag="ROD_13271" FT /product="putative membrane-bound metal-dependent FT hydrolase" FT /db_xref="GOA:D2TGS7" FT /db_xref="InterPro:IPR007404" FT /db_xref="InterPro:IPR016956" FT /db_xref="UniProtKB/TrEMBL:D2TGS7" FT /protein_id="CBG88090.1" FT /translation="MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLP FT DIDHPKSFLGQRLKWISKPIARTFGHRGFTHSLLAVFALLTTFYLKVPDSWIVPADALQ FT GMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFLCLALFAWAVWMP FT QNLPQNSAVRWSSDMINTLQMQFNRLIKQQID" FT misc_feature complement(1424777..1425058) FT /locus_tag="ROD_13271" FT /note="HMMPfam hit to PF04307, Protein of unknown function FT DUF457, transmembrane, score 1.2e-39" FT /inference="protein motif:PFAM:PF04307" FT CDS complement(1425271..1426032) FT /transl_table=11 FT /gene="kduD" FT /locus_tag="ROD_13281" FT /product="2-deoxy-d-gluconate 3-dehydrogenase" FT /EC_number="1.1.1.125" FT /db_xref="GOA:D2TGS8" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR002347" FT /db_xref="InterPro:IPR011286" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR020904" FT /db_xref="UniProtKB/TrEMBL:D2TGS8" FT /protein_id="CBG88091.1" FT /translation="MILNAFSLAGKVAIVTGCDTGLGQGMTAALAEAGCDIVGVNRKVP FT HQTATIVAAAGRRFFAIQADLSQQDAIPDIVSQTVEKFGRIDILVNNAGTIRREDALSF FT SEKDWDEVMDLNLKSVFFLSQAVARHFVARQQGGKIINIASMLSFQGGIRVPSYTASKS FT GVLGLTRLLANEWAQYGINVNAIAPGYMATNNTQQLREDAGRNKEIVDRIPAGRWGTPE FT DLQGPVVFLASGASDYVNGYTLAVDGGWLAR" FT misc_feature complement(1425502..1426002) FT /gene="kduD" FT /locus_tag="ROD_13281" FT /note="HMMPfam hit to PF00106, Short-chain FT dehydrogenase/reductase SDR, score 9e-28" FT /inference="protein motif:PFAM:PF00106" FT misc_feature complement(1425514..1425600) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT /inference="protein motif:Prosite:PS00061" FT CDS complement(1426182..1426850) FT /transl_table=11 FT /locus_tag="ROD_13291" FT /product="putative phosphatase" FT /EC_number="3.1.3.-" FT /db_xref="GOA:D2TGS9" FT /db_xref="InterPro:IPR005833" FT /db_xref="InterPro:IPR005834" FT /db_xref="InterPro:IPR006402" FT /db_xref="InterPro:IPR023198" FT /db_xref="InterPro:IPR023214" FT /db_xref="UniProtKB/TrEMBL:D2TGS9" FT /protein_id="CBG88092.1" FT /translation="MAISRQILAAIFDMDGLLINSEPLWDRAELDVLASVGVDITRRHE FT LPDTLGLRIDMVVELWFARQPWNGPGREEVTQRIIARAISLVEETRPLLPGVKEAVALC FT KEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAENLPYSKPHPQVYLDCAAKLGV FT DPLTCVALEDSVNGMVASKAARMRSIVVPAKEDQHDPRFALANVKLTSLSELTAGHLRG FT " FT misc_feature complement(1426269..1426832) FT /locus_tag="ROD_13291" FT /note="HMMPfam hit to PF00702, Haloacid dehalogenase-like FT hydrolase, score 5.4e-30" FT /inference="protein motif:PFAM:PF00702" FT CDS 1426977..1427513 FT /transl_table=11 FT /locus_tag="ROD_13301" FT /product="putative membrane protein" FT /db_xref="UniProtKB/TrEMBL:D2TGT0" FT /protein_id="CBG88093.1" FT /translation="MTYQQAGRIAVLKRILGWIIFIPALLSTLISALKFMYAHSEKQEG FT INAVMLDFTHVMIDMMRVNTPFLNLFWYNSPTPDFQNSLNIIFWLIFMLIFVGLAMQDS FT GARMSRQARFLREGVEDQLILEKAKGSEGLTREQIESRIVVPHHTIFLQFFPLYILPVI FT IIVLGYVFFSLLGFL" FT misc_feature join(1427019..1427087,1427226..1427279,1427439..1427507) FT /locus_tag="ROD_13301" FT /note="3 probable transmembrane helices predicted for FT ROD13301 by TMHMM2.0 at aa 15-37, 84-101 and 155-177" FT CDS complement(1427558..1428418) FT /transl_table=11 FT /locus_tag="ROD_13311" FT /product="putative kinase" FT /db_xref="GOA:D2TGT1" FT /db_xref="InterPro:IPR011009" FT /db_xref="InterPro:IPR016477" FT /db_xref="UniProtKB/TrEMBL:D2TGT1" FT /protein_id="CBG88094.1" FT /translation="MWQAISRLLSEQLGEGEIELRNELPGGEIHAAWHIRYAGRDFFVK FT CDERELLAGFTAEADQLELLSRSRTVTVPKVWAVGADRDYSFLVMDFLPPRPLDAHNAF FT MLGQQLARLHQWSDQPQFGLDFDNALSTTPQPNAWQRRWSTFFAEQHIGWQLELAAEKG FT IAFGNIDTIVEHIQQRLSSHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDRECDL FT AMLPLHTEQPPQIYDGYQSVAPLPQDFLDRQPVYQLYTLLNRARLFGGQHLVTAQQAMD FT RILAA" FT misc_feature complement(1427561..1428418) FT /locus_tag="ROD_13311" FT /note="HMMPfam hit to PF03881, Fructosamine kinase, score FT 2e-213" FT /inference="protein motif:PFAM:PF03881" FT CDS complement(1428525..1428815) FT /transl_table=11 FT /locus_tag="ROD_13321" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR020499" FT /db_xref="InterPro:IPR022597" FT /db_xref="UniProtKB/TrEMBL:D2TGT2" FT /protein_id="CBG88095.1" FT /translation="MASGEIKRYVITVKFHEDSLTQINELNNHLTRAGFLLTMTDDEGN FT VHELGTNTFGLISAQSPQEVEALTTGLAESAIEKTPEVTVVSWEEWKKDQQ" FT CDS complement(1428916..1429848) FT /transl_table=11 FT /gene="pfkB" FT /locus_tag="ROD_13331" FT /product="6-phosphofructokinase isozyme 2 FT (phosphofructokinase-2)" FT /EC_number="2.7.1.11" FT /db_xref="GOA:D2TGT3" FT /db_xref="InterPro:IPR002173" FT /db_xref="InterPro:IPR011611" FT /db_xref="InterPro:IPR017583" FT /db_xref="UniProtKB/TrEMBL:D2TGT3" FT /protein_id="CBG88096.1" FT /translation="MVRIYTLTLAPSLDSATITPQIYPEGKLRCTSPVFEPGGGGINVA FT RAITHLGGSATAIFPAGGATGEHLVSLLADEHVPVATVEAKDWTRQNLHVHVESSGEQY FT RFVMPGAALDDDEFRQLEEQVLEIESGAILVISGSLPPGVSVEKLTQLLTAAQKQGIRC FT IIDSSGEALTAALAIGNIELVKPNKKELSALVNRDLTQPDDVRKAAEEIVRSGKARRVV FT VSLGPQGALGVDGETCVQVVPPPLKSQSTVGAGDSMVGAMTLKLAEDAPLEDMVRFGVA FT AGSAATINQGTRLCSHEDTQKIYAWLDQQ" FT misc_feature complement(1428952..1429830) FT /gene="pfkB" FT /locus_tag="ROD_13331" FT /note="HMMPfam hit to PF00294, Carbohydrate/purine kinase, FT score 1.1e-70" FT /inference="protein motif:PFAM:PF00294" FT misc_feature complement(1429060..1429101) FT /note="PS00584 pfkB family of carbohydrate kinases FT signature 2." FT /inference="protein motif:Prosite:PS00584" FT misc_feature complement(1429663..1429737) FT /note="PS00583 pfkB family of carbohydrate kinases FT signature 1." FT /inference="protein motif:Prosite:PS00583" FT CDS 1430136..1430894 FT /transl_table=11 FT /locus_tag="ROD_13341" FT /product="putative exported protein" FT /db_xref="InterPro:IPR007433" FT /db_xref="UniProtKB/TrEMBL:D2TGT4" FT /protein_id="CBG88097.1" FT /translation="MKLFKTVPAALLLAGGVLASMNAAADGSVFTVMDDPSSAKKPFEG FT ELNAGYLAQSGNTKSSSLTADTTMTWYGQTTAWSLWGNASNTSSNDERSSEKYAVGGRS FT RFNLSDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRYDEH FT TDDTRETQALGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSETALNVAINEHFGLKV FT AYNVTWNSQPPETAPEHTDRRTTVSLGYRM" FT sig_peptide 1430136..1430210 FT /locus_tag="ROD_13341" FT /note="Signal peptide predicted for ROD13341 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 0.940 between residues 25 and 26" FT misc_feature 1430205..1430891 FT /locus_tag="ROD_13341" FT /note="HMMPfam hit to PF04338, Protein of unknown function FT DUF481, score 1.2e-119" FT /inference="protein motif:PFAM:PF04338" FT CDS 1431160..1431378 FT /transl_table=11 FT /locus_tag="ROD_13351" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:D2TGT5" FT /protein_id="CBG88098.1" FT /translation="MNNIKMASAAIVLSALSFGVFAAEPVSDAQQVGITKASDVEAGSN FT IAPGSQSTGQSMNDAFNVHTLVAGEWS" FT misc_feature 1431160..1431249 FT /locus_tag="ROD_13351" FT /note="HMMPfam hit to PF07338, Protein of unknown function FT DUF1471, score 3.2e-07" FT /inference="protein motif:PFAM:PF07338" FT sig_peptide 1431160..1431225 FT /locus_tag="ROD_13351" FT /note="Signal peptide predicted for ROD13351 by SignalP 2.0 FT HMM (Signal peptide probability 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT CDS 1431625..1431792 FT /transl_table=11 FT /locus_tag="ROD_13361" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2TGT6" FT /protein_id="CBG88099.1" FT /translation="MSALWLSRWFTLWYSVTKPTALQCIDLHHIIHGDCGFEPQSMPCT FT LSDGVIKKRV" FT CDS 1431935..1433863 FT /transl_table=11 FT /gene="thrS" FT /locus_tag="ROD_13371" FT /product="threonyl-tRNA synthetase" FT /EC_number="6.1.1.3" FT /db_xref="GOA:D2TGT7" FT /db_xref="InterPro:IPR002314" FT /db_xref="InterPro:IPR002320" FT /db_xref="InterPro:IPR004095" FT /db_xref="InterPro:IPR004154" FT /db_xref="InterPro:IPR006195" FT /db_xref="InterPro:IPR012675" FT /db_xref="InterPro:IPR012676" FT /db_xref="InterPro:IPR012947" FT /db_xref="InterPro:IPR018163" FT /db_xref="UniProtKB/TrEMBL:D2TGT7" FT /protein_id="CBG88100.1" FT /translation="MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKATIAGRVNGELV FT DASDLIENDATLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVVDNGFYY FT DVDLDRTLTQEDVDALEKRMHELAEKNYDVIKKKVSWHEARETFVKRGEPYKVSILDEN FT IAHDDQPGLYHHEEYIDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSDNKMLQRIYGTA FT WADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFV FT RSKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKDAMFTTSSENREYCIKPMNCPGHVQI FT FNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDEVNA FT CIRMVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGE FT GAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGS FT MERFIGILTEEFAGFFPTWLAPVQVVVMNITDSQSEYVNELTQKLQNAGIRVKADLRNE FT KIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNEVIEKLQQEIRSR FT SLQQLEE" FT misc_feature 1431938..1432117 FT /gene="thrS" FT /locus_tag="ROD_13371" FT /note="HMMPfam hit to PF02824, TGS, score 9.6e-17" FT /inference="protein motif:PFAM:PF02824" FT misc_feature 1432442..1432591 FT /gene="thrS" FT /locus_tag="ROD_13371" FT /note="HMMPfam hit to PF07973, Threonyl/alanyl tRNA FT synthetase, SAD, score 1.3e-23" FT /inference="protein motif:PFAM:PF07973" FT misc_feature 1432751..1433248 FT /gene="thrS" FT /locus_tag="ROD_13371" FT /note="HMMPfam hit to PF00587, Aminoacyl-tRNA synthetase, FT class II (G, H, P and S), score 1.2e-65" FT /inference="protein motif:PFAM:PF00587" FT misc_feature 1433018..1433083 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT /inference="protein motif:Prosite:PS00179" FT misc_feature 1433477..1433506 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT /inference="protein motif:Prosite:PS00339" FT misc_feature 1433555..1433827 FT /gene="thrS" FT /locus_tag="ROD_13371" FT /note="HMMPfam hit to PF03129, Anticodon-binding, score FT 2.3e-33" FT /inference="protein motif:PFAM:PF03129" FT CDS 1433867..1434409 FT /transl_table=11 FT /gene="infC" FT /locus_tag="ROD_13381" FT /product="translation initiation factor if-3" FT /note="Note the different N-terminus" FT /db_xref="GOA:D2TGT8" FT /db_xref="InterPro:IPR001288" FT /db_xref="InterPro:IPR019813" FT /db_xref="InterPro:IPR019814" FT /db_xref="InterPro:IPR019815" FT /db_xref="UniProtKB/TrEMBL:D2TGT8" FT /protein_id="CBG88101.1" FT /translation="MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREAIEK FT AEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKVIQVKEIKFRPGTDE FT GDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPT FT KIEGRQMIMVLAPKKKQ" FT misc_feature 1433894..1434121 FT /gene="infC" FT /locus_tag="ROD_13381" FT /note="HMMPfam hit to PF05198, Initiation factor 3, score FT 1.2e-48" FT /inference="protein motif:PFAM:PF05198" FT misc_feature 1434062..1434103 FT /note="PS00938 Initiation factor 3 signature." FT /inference="protein motif:Prosite:PS00938" FT misc_feature 1434134..1434400 FT /gene="infC" FT /locus_tag="ROD_13381" FT /note="HMMPfam hit to PF00707, Initiation factor 3, score FT 2.8e-55" FT /inference="protein motif:PFAM:PF00707" FT CDS 1434492..1434704 FT /transl_table=11 FT /gene="rpmI" FT /locus_tag="ROD_13391" FT /product="50S ribosomal subunit protein L35" FT /db_xref="GOA:D2TGT9" FT /db_xref="InterPro:IPR001706" FT /db_xref="InterPro:IPR018265" FT /db_xref="InterPro:IPR021137" FT /db_xref="UniProtKB/TrEMBL:D2TGT9" FT /protein_id="CBG88102.1" FT /translation="MEVIKMPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKR FT KRHLRPKAMVSKGDLGLVIACLPYA" FT misc_feature 1434516..1434692 FT /gene="rpmI" FT /locus_tag="ROD_13391" FT /note="HMMPfam hit to PF01632, Ribosomal protein L35, score FT 1.2e-32" FT /inference="protein motif:PFAM:PF01632" FT misc_feature 1434516..1434551 FT /note="PS00936 Ribosomal protein L35 signature." FT /inference="protein motif:Prosite:PS00936" FT CDS 1434824..1435180 FT /transl_table=11 FT /gene="rplT" FT /locus_tag="ROD_13401" FT /product="50S ribosomal subunit protein L20" FT /db_xref="GOA:D2TGU0" FT /db_xref="InterPro:IPR005813" FT /db_xref="UniProtKB/TrEMBL:D2TGU0" FT /protein_id="CBG88103.1" FT /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQY FT AYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKV FT AFTALVEKAKAALA" FT misc_feature 1434827..1435150 FT /gene="rplT" FT /locus_tag="ROD_13401" FT /note="HMMPfam hit to PF00453, Ribosomal protein L20, score FT 2.9e-69" FT /inference="protein motif:PFAM:PF00453" FT misc_feature 1434983..1435033 FT /note="PS00937 Ribosomal protein L20 signature." FT /inference="protein motif:Prosite:PS00937" FT CDS 1435307..1435351 FT /transl_table=11 FT /gene="pheM" FT /locus_tag="ROD_13402" FT /product="phenylalanyl-tRNA synthetase operon leader FT peptide" FT /db_xref="GOA:D2TGU1" FT /db_xref="UniProtKB/TrEMBL:D2TGU1" FT /protein_id="CBG88104.1" FT /translation="MNAAIFRFFFYFST" FT CDS 1435590..1436573 FT /transl_table=11 FT /gene="pheS" FT /locus_tag="ROD_13411" FT /product="Phenylalanyl-tRNA synthetase alpha chain" FT /EC_number="6.1.1.20" FT /db_xref="GOA:D2TGU2" FT /db_xref="InterPro:IPR002319" FT /db_xref="InterPro:IPR004188" FT /db_xref="InterPro:IPR004529" FT /db_xref="InterPro:IPR006195" FT /db_xref="InterPro:IPR010978" FT /db_xref="InterPro:IPR022911" FT /db_xref="UniProtKB/TrEMBL:D2TGU2" FT /protein_id="CBG88105.1" FT /translation="MSHLAELVASAKAAINQASDVAALDNVRVEYLGKKGHLTLQMTTL FT RELPPEERPAAGAVINEAKEQVQQALNARKAELENAALNARLAAETLDVSLPGRRIENG FT GLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDAT FT RLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTN FT LKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLR FT NVGIDPEIYSGFAFGMGMERLTMLRYGVTDLRAFFENDLRFLKQFK" FT misc_feature 1435635..1435853 FT /gene="pheS" FT /locus_tag="ROD_13411" FT /note="HMMPfam hit to PF02912, Phenylalanyl-tRNA FT synthetase, class II, N-terminal, score 6.1e-39" FT /inference="protein motif:PFAM:PF02912" FT misc_feature 1435860..1436567 FT /gene="pheS" FT /locus_tag="ROD_13411" FT /note="HMMPfam hit to PF01409, Phenylalanyl-tRNA FT synthetase, class IIc, score 4.5e-169" FT /inference="protein motif:PFAM:PF01409" FT misc_feature 1436169..1436219 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT /inference="protein motif:Prosite:PS00179" FT misc_feature 1436475..1436504 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT /inference="protein motif:Prosite:PS00339" FT CDS 1436589..1438976 FT /transl_table=11 FT /gene="pheT" FT /locus_tag="ROD_13421" FT /product="Phenylalanyl-tRNA synthetase beta chain" FT /EC_number="6.1.1.20" FT /db_xref="GOA:D2TGU3" FT /db_xref="InterPro:IPR002547" FT /db_xref="InterPro:IPR004532" FT /db_xref="InterPro:IPR005121" FT /db_xref="InterPro:IPR005146" FT /db_xref="InterPro:IPR005147" FT /db_xref="InterPro:IPR009061" FT /db_xref="InterPro:IPR012340" FT