ID FM865442; SV 1; circular; genomic DNA; STD; PRO; 7471 BP. XX AC FM865442; XX PR Project:PRJEA32377; XX DT 28-APR-2009 (Rel. 100, Created) DT 10-JUN-2009 (Rel. 101, Last updated, Version 3) XX DE Chlamydia trachomatis plasmid pSW5, strain Sweden5, serovar F XX KW . XX OS Chlamydia trachomatis OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; OC Chlamydia/Chlamydophila group; Chlamydia. OG Plasmid pSW5 XX RN [1] RP 1-7471 RA Seth-Smith H.M.; RT ; RL Submitted (28-OCT-2008) to the INSDC. RL Seth-Smith H.M., Pathogen Genomics, Wellcome Trust Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UNITED KINGDOM. XX RN [2] RX DOI; 10.1186/1471-2164-10-239. RX PUBMED; 19460133. RA Seth-Smith H.M., Harris S.R., Persson K., Marsh P., Barron A., Bignell A., RA Bjartling C., Clark L., Cutcliffe L.T., Lambden P.R., Lennard N., RA Lockey S.J., Quail M.A., Salim O., Skilton R.J., Wang Y., Holland M.J., RA Parkhill J., Thomson N.R., Clarke I.N.; RT "Co-evolution of genomes and plasmids within Chlamydia trachomatis and the RT emergence in Sweden of a new variant strain"; RL BMC Genomics 10(1):239-239(2009). XX FH Key Location/Qualifiers FH FT source 1..7471 FT /organism="Chlamydia trachomatis" FT /plasmid="pSW5" FT /strain="Sweden5" FT /mol_type="genomic DNA" FT /serovar="F" FT /db_xref="taxon:813" FT rep_origin 1..66 FT /note="putative origin of replication; contains 3 copies of FT a 22bp repeat" FT CDS 143..1060 FT /transl_table=11 FT /locus_tag="PSW5_1" FT /product="putative virulence plasmid integrase" FT /db_xref="GOA:C3W7Y5" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/TrEMBL:C3W7Y5" FT /protein_id="CAR95949.1" FT /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSLE FT ILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLTKG FT YIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQGIR FT KLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNGRVFV FT SKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMRISCLS FT SRQSVCSYCSGEEVIPLVQTPTIL" FT CDS complement(1111..2103) FT /transl_table=11 FT /locus_tag="PSW5_2" FT /product="putative virulence plasmid integrase" FT /db_xref="GOA:C3W7Z4" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/TrEMBL:C3W7Z4" FT /protein_id="CAR95950.1" FT /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEVI FT MHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKTSW FT TEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSLQTA FT SFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQTEKRI FT IITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKITPHVL FT RATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI" FT CDS 2202..3557 FT /transl_table=11 FT /locus_tag="PSW5_3" FT /product="putative helicase, DnaB family" FT /db_xref="GOA:C3W7Y7" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR007693" FT /db_xref="InterPro:IPR007694" FT /db_xref="UniProtKB/TrEMBL:C3W7Y7" FT /protein_id="CAR95951.1" FT /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCSH FT HKNIFIVFKYLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVSHT FT VFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSIRSA FT RGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKGNFVI FT IAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGEKLQRG FT DLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFIDYLQLI FT NSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSDLRDSGQI FT EQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKVW" FT CDS 3551..4606 FT /transl_table=11 FT /locus_tag="PSW5_4" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="UniProtKB/TrEMBL:C3W7Z6" FT /protein_id="CAR95952.1" FT /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVIG FT LDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLEAY FT GVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTLSPI FT IRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPANVYQ FT EIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYILRMNRY FT ICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERFEEITKK FT SKEQMEQESIN" FT CDS 4668..5462 FT /transl_table=11 FT /locus_tag="PSW5_5" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="InterPro:IPR008444" FT /db_xref="UniProtKB/TrEMBL:C3W7Y9" FT /protein_id="CAR95953.1" FT /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVAA FT KMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQDI FT LDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSMF FT LVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTPTTYS FT LRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA" FT CDS 5532..5840 FT /transl_table=11 FT /locus_tag="PSW5_6" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="UniProtKB/TrEMBL:C3W7Z0" FT /protein_id="CAR95954.1" FT /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLEL FT YHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE" FT CDS 5868..6662 FT /transl_table=11 FT /locus_tag="PSW5_7" FT /product="putative plasmid partitioning protein, ParA FT family" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:C3W7Z1" FT /protein_id="CAR95955.1" FT /translation="MHTLVFCSFKGGTGKTTLSLNVGCNLAQFLGKKVLLADLDPQSNL FT SSGLGASVRSDQKGLHDIVYTSNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPS FT NNLKLFLNEYCAPFYDICIIDTPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIRE FT FLSSVGKPEEEHILGIALSFWDDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLL FT KEDSVANVYPNSRAAEDILKLTHEIANILHIEYERDYSQRTT" FT CDS 6659..7402 FT /transl_table=11 FT /locus_tag="PSW5_8" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="InterPro:IPR005350" FT /db_xref="UniProtKB/TrEMBL:C3W7Z2" FT /protein_id="CAR95956.1" FT /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQSL FT DRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDHFS FT STTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKGDLK FT TKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEILRIM FT CSGVSLSSYNENLLQQLFELFKQKS" XX SQ Sequence 7471 BP; 2450 A; 1280 C; 1426 G; 2315 T; 0 other; tttgcaactc ttggtggtag actttgcaac tcttggtggt agactttgca actcttggtg 60 gtagacttgg tcataatgga cttttgttaa aaaatttctt aaaatcttag agctccgatt 120 ttgaatagct ttggttaaga aaatgggctc gatggctttc cataaaagta gattgttttt 180 aacttttggg gacgcgtcgg aaatttggtt atctacttta tcttatctaa ctagaaaaaa 240 ttatgcgtct gggattaact ttcttgtttc tttagagatt ctggatttat cggaaacctt 300 gataaaggct atttctcttg accacagcga atctttgttt aaaatcaagt ctctagatgt 360 ttttaatgga aaagttgttt cagaggcatc taaacaggct agagcggcat gctacatatc 420 tttcacaaag tttttgtata gattgaccaa gggatatatt aaacccgcta ttccattgaa 480 agattttgga aacactacat tttttaaaat ccgagacaaa atcaaaacag aatcgatttc 540 taagcaggaa tggacagttt tttttgaagc gctccggata gtgaattata gagactattt 600 aatcggtaaa ttgattgtac aagggatccg taagttagac gaaattttgt ctttgcgcac 660 agacgatcta ttttttgcat ccaatcagat ttcctttcgc attaaaaaaa gacagaataa 720 agaaaccaaa attctaatca catttcctat cagcttaatg gaagagttgc aaaaatacac 780 ttgtgggaga aatgggagag tatttgtttc taaaataggg attcctgtaa caacaagtca 840 ggttgcgcat aattttaggc ttgcagagtt ccatagtgct atgaaaataa aaattactcc 900 cagagtactt cgtgcaagcg ctttgattca tttaaagcaa ataggattaa aagatgagga 960 aatcatgcgt atttcctgtc tttcatcgag acaaagtgtg tgttcttatt gttctgggga 1020 agaggtaatt cctctagtac aaacacccac aatattgtga tataattaaa attatattca 1080 tattctgttg ccagaaaaaa cacctttagg ctatattaga gccatcttct ttgaagcgtt 1140 gtcttctcga gaagatttat cgtacgcaaa tatcatcttt gcggttgcgt gtcctgtgac 1200 cttcattatg tcggagtctg agcaccctag gcgtttgtac tccgtcacag cggttgctcg 1260 aagcacgtgc ggggttattt taaaagggat tgcagcttgt agtcctgctt gagagaacgt 1320 gcgggcgatt tgccttaacc ccaccatttt tccggagcga gttacgaaga caaaacctct 1380 tcgttgaccg atgtactctt gtagaaagtg cataaacttc tgaggataag ttataataat 1440 cctcttttct gtctgacggt tcttaagctg ggagaaagaa atggtagctt gttggaaaca 1500 aatctgacta atctccaagc ttaagacttc agaggagcgt ttacctcctt ggagcattgt 1560 ctgggcgatc aaccaatccc gggcattgat tttttttagc tcttttagga aggatgctgt 1620 ttgcaaactg ttcatcgcat ccgtttttac tatttccctg gttttaaaaa atgttcgact 1680 attttcttgt ttagaaggtt gcgctatagc gactattcct tgagtcatcc tgtttaggaa 1740 tcttgttaag gaaatatagc ttgctgctcg aacttgttta gtaccttcgg tccaagaagt 1800 cttggcagag gaaacttttt taatcgcatc taggattaga ttatgattta aaagggaaaa 1860 ctcttgcaga ttcatatcca aggacaatag accaatcttt tctaaagaca aaaaagatcc 1920 tcgatatgat ctacaagtat gtttgttgag tgatgcggtc caatgcataa taacttcgaa 1980 taaggagaag cttttcatgc gtttccaata ggattcttgg cgaattttta aaacttcctg 2040 ataagacttt tcactatatt ctaacgacat ttcttgctgc aaagataaaa tccctttacc 2100 catgaaatcc ctcgtgatat aacctatccg taaaatgtcc tgattagtga aataatcagg 2160 ttgttaacag gatagcacgc tcggtatttt tttatataaa catgaaaact cgttccgaaa 2220 tagaaaatcg catgcaagat atcgagtatg cgttgttagg taaagctctg atatttgaag 2280 actctactga gtatattctg aggcagcttg ctaattatga gtttaagtgt tctcatcata 2340 aaaacatatt catagtattt aaatacttaa aagacaatgg attacctata actgtagact 2400 cggcttggga agagcttttg cggcgtcgta tcaaagatat ggacaaatcg tatctcgggt 2460 taatgttgca tgatgcttta tcaaatgaca agcttagatc cgtttctcat acggttttcc 2520 tcgatgattt gagcgtgtgt agcgctgaag aaaatttgag taatttcatt ttccgctcgt 2580 ttaatgagta caatgaaaat ccattgcgta gatctccgtt tctattgctt gagcgtataa 2640 agggaaggct tgatagtgct atagcaaaga ctttttctat tcgcagcgct agaggccggt 2700 ctatttatga tatattctca cagtcagaaa ttggagtgct ggctcgtata aaaaaaagac 2760 gagtagcgtt ctctgagaat caaaattctt tctttgatgg cttcccaaca ggatacaagg 2820 atattgatga taaaggagtt atcttagcta aaggtaattt cgtgattata gcagctagac 2880 catctatagg gaaaacagct ttagctatag acatggcgat aaatcttgcg gttactcaac 2940 agcgtagagt tggtttccta tctctagaaa tgagcgcagg tcaaattgtt gagcggatta 3000 ttgctaattt aacaggaata tctggtgaaa aattacaaag aggggatctc tctaaagaag 3060 aattattccg agtagaagaa gctggagaaa cggttagaga atcacatttt tatatctgca 3120 gtgatagtca gtataagctt aacttaatcg cgaatcagat ccggttgctg agaaaagaag 3180 atcgagtaga cgtaatattt atcgattact tgcagttgat caactcatcg gttggagaaa 3240 atcgtcaaaa tgaaatagca gatatatcta gaaccttaag aggtttagcc tcagagctaa 3300 acattcctat agtttgttta tcccaactat ctagaaaagt tgaggataga gcaaataaag 3360 ttcccatgct ttcagatttg cgagacagcg gtcaaataga gcaagacgca gatgtgattt 3420 tgtttatcaa taggaaggaa tcgtcttcta attgtgagat aactgttggg aaaaatagac 3480 atggatcggt tttctcttcg gtattacatt tcgatccaaa aattagtaaa ttctccgcta 3540 ttaaaaaagt atggtaaatt atagtaactg ccacttcatc aaaagtccta tccaccttga 3600 aaatcagaag tttggaagaa gacctggtca atctattaag atatctccca aattggctca 3660 aaatgggatg gtagaagtta taggtcttga ttttctttca tctcattacc atgcattagc 3720 agctatccaa agattactga ccgcaacgaa ttacaagggg aacacaaaag gggttgtttt 3780 atccagagaa tcaaatagtt ttcaatttga aggatggata ccaagaatcc gttttacaaa 3840 aactgaattc ttagaggctt atggagttaa gcggtataaa acatccagaa ataagtatga 3900 gtttagtgga aaagaagctg aaactgcttt agaagcctta taccatttag gacatcaacc 3960 gtttttaata gtggcaacta gaactcgatg gactaatgga acacaaatag tagaccgtta 4020 ccaaactctt tctccgatca ttaggattta cgaaggatgg gaaggtttaa ctgacgaaga 4080 aaatatagat atagacttaa caccttttaa ttcaccacct acacggaaac ataaagggtt 4140 cgttgtagag ccatgtccta tcttggtaga tcaaatagaa tcctactttg taatcaagcc 4200 tgcaaatgta taccaagaaa taaaaatgcg tttcccaaat gcatcaaagt atgcttacac 4260 atttatcgac tgggtgatta cagcagctgc gaaaaagaga cgaaaattaa ctaaggataa 4320 ttcttggcca gaaaacttgt tattaaacgt taacgttaaa agtcttgcat atattttaag 4380 gatgaatcgg tacatctgta caaggaactg gaaaaaaatc gagttagcta tcgataaatg 4440 tatagaaatc gccattcagc ttggctggtt atctagaaga aaacgcattg aatttctgga 4500 ttcttctaaa ctctctaaaa aagaaattct atatctaaat aaagagcgct ttgaagaaat 4560 aactaagaaa tctaaagaac aaatggaaca agaatctatt aattaatagc aagcttgaaa 4620 ctaaaaacct aatttattta aagctcaaaa taaaaaagag ttttaaaatg ggaaattctg 4680 gtttttattt gtataacact gaaaactgcg tctttgctga taatatcaaa gttgggcaaa 4740 tgacagagcc gctcaaggac cagcaaataa tccttgggac aacatcaaca cctgtcgcag 4800 ccaaaatgac agcttctgat ggaatatctt taacagtctc caataattca tcaaccaatg 4860 cttctattac aattggtttg gatgcggaaa aagcttacca gcttattcta gaaaagttgg 4920 gagatcaaat tcttgatgga attgctgata ctattgttga tagtacagtc caagatattt 4980 tagacaaaat caaaacagac ccttctctag gtttgttgaa agcttttaac aactttccaa 5040 tcactaataa aattcaatgc aacgggttat tcactcccag taacattgaa actttattag 5100 gaggaactga aataggaaaa ttcacagtca cacccaaaag ctctgggagc atgttcttag 5160 tctcagcaga tattattgca tcaagaatgg aaggcggcgt tgttctagct ttggtacgag 5220 aaggtgattc taagccctgc gcgattagtt atggatactc atcaggcatt cctaatttat 5280 gtagtctaag aaccagtatt actaatacag gattgactcc gacaacgtat tcattacgtg 5340 taggcggttt agaaagcggt gtggtatggg ttaatgccct ttctaatggc aatgatattt 5400 taggaataac aaatacttct aatgtatctt ttttagaggt aatacctcaa acaaacgctt 5460 aaacaatttt tattggattt ttcttatagg ttttatattt agagaaaaca gttcgaatta 5520 cggggtttgt tatgcaaaat aaaagaaaag tgagggacga ttttattaaa attgttaaag 5580 atgtgaaaaa agatttcccc gaattagacc taaaaatacg agtaaacaag gaaaaagtaa 5640 ctttcttaaa ttctccctta gaactctacc ataaaagtgt ctcactaatt ctaggactgc 5700 ttcaacaaat agaaaactct ttaggattat tcccagactc tcctgttctt gaaaaattag 5760 aggataacag tttaaagcta aaaaaggctt tgattatgct tatcttgtct agaaaagaca 5820 tgttttccaa ggctgaatag acaacttact ctaacgttgg agttgatttg cacaccttag 5880 ttttttgctc ttttaaggga ggaactggaa aaacaacact ttctctaaac gtgggatgca 5940 acttggccca atttttaggg aaaaaagtgt tacttgctga cctagacccg caatccaatt 6000 tatcttctgg attgggggct agtgtcagaa gtgaccaaaa aggcttgcac gacatagtat 6060 acacatcaaa cgatttaaaa tcaatcattt gcgaaacaaa aaaagatagt gtggacctaa 6120 ttcctgcatc attttcatcc gaacagttta gagaattgga tattcataga ggacctagta 6180 acaacttaaa gttatttctg aatgagtact gcgctccttt ttatgacatc tgcataatag 6240 acactccacc tagcctagga gggttaacga aagaagcttt tgttgcagga gacaaattaa 6300 ttgcttgttt aactccagaa cctttttcta ttctagggtt acaaaagata cgtgaattct 6360 taagttcggt cggaaaacct gaagaagaac acattcttgg aatagctttg tctttttggg 6420 atgatcgtaa ctcgactaac caaatgtata tagacattat cgagtctatt tacaaaaaca 6480 agcttttttc aacaaaaatt cgtcgagata tttctctcag ccgttctctt cttaaagaag 6540 attctgtagc taatgtctat ccaaattcta gggccgcaga agatattctg aagttaacgc 6600 atgaaatagc aaatattttg catatcgaat atgaacgaga ttactctcag aggacaacgt 6660 gaacaaacta aaaaaagaag cggatgtctt ttttaaaaaa aatcaaactg ccgcttctct 6720 agattttaag aagacgcttc cctccattga actattctca gcaactttga attctgagga 6780 aagtcagagt ttggatcgat tatttttatc agagtcccaa aactattcgg atgaagaatt 6840 ttatcaagaa gacatcctag cggtaaaact gcttactggt cagataaaat ccatacagaa 6900 gcaacacgta cttcttttag gagaaaaaat ctataatgct agaaaaatcc tgagtaagga 6960 tcacttctcc tcaacaactt tttcatcttg gatagagtta gtttttagaa ctaagtcttc 7020 tgcttacaat gctcttgcat attacgagct ttttataaac ctccccaacc aaactctaca 7080 aaaagagttt caatcgatcc cctataaatc cgcatatatt ttggccgcta gaaaaggcga 7140 tttaaaaacc aaggtcgatg tgatagggaa agtatgtgga atgtcgaact catcggcgat 7200 aagggtgttg gatcaatttc ttccttcatc tagaaacaaa gacgttagag aaacgataga 7260 taagtctgat tcagagaaga atcgccaatt atctgatttc ttaatagaga tacttcgcat 7320 catgtgttcc ggagtttctt tgtcctccta taacgaaaat cttctacaac agctttttga 7380 actttttaag caaaagagct gatcctccgt cagctcatat atatatatct attatatata 7440 tatatttagg gatttgattt cacgagagag a 7471 //