ID FM865441; SV 1; circular; genomic DNA; STD; PRO; 7493 BP. XX AC FM865441; XX PR Project:PRJEA32375; XX DT 28-APR-2009 (Rel. 100, Created) DT 10-JUN-2009 (Rel. 101, Last updated, Version 3) XX DE Chlamydia trachomatis plasmid pSW4, strain Sweden4, serovar F XX KW . XX OS Chlamydia trachomatis OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; OC Chlamydia/Chlamydophila group; Chlamydia. OG Plasmid pSW4 XX RN [1] RP 1-7493 RA Seth-Smith H.M.; RT ; RL Submitted (28-OCT-2008) to the INSDC. RL Seth-Smith H.M., Pathogen Genomics, Wellcome Trust Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UNITED KINGDOM. XX RN [2] RX DOI; 10.1186/1471-2164-10-239. RX PUBMED; 19460133. RA Seth-Smith H.M., Harris S.R., Persson K., Marsh P., Barron A., Bignell A., RA Bjartling C., Clark L., Cutcliffe L.T., Lambden P.R., Lennard N., RA Lockey S.J., Quail M.A., Salim O., Skilton R.J., Wang Y., Holland M.J., RA Parkhill J., Thomson N.R., Clarke I.N.; RT "Co-evolution of genomes and plasmids within Chlamydia trachomatis and the RT emergence in Sweden of a new variant strain"; RL BMC Genomics 10(1):239-239(2009). XX FH Key Location/Qualifiers FH FT source 1..7493 FT /organism="Chlamydia trachomatis" FT /plasmid="pSW4" FT /strain="Sweden4" FT /mol_type="genomic DNA" FT /serovar="F" FT /db_xref="taxon:813" FT rep_origin 1..88 FT /note="putative origin of replication; contains 4 copies of FT a 22bp repeat" FT CDS 165..1082 FT /transl_table=11 FT /locus_tag="PSW4_1" FT /product="putative virulence plasmid integrase" FT /db_xref="GOA:C3W7Y5" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/TrEMBL:C3W7Y5" FT /protein_id="CAR95941.1" FT /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSLE FT ILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLTKG FT YIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQGIR FT KLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNGRVFV FT SKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMRISCLS FT SRQSVCSYCSGEEVIPLVQTPTIL" FT CDS complement(1133..2125) FT /transl_table=11 FT /locus_tag="PSW4_2" FT /product="putative virulence plasmid integrase" FT /db_xref="GOA:C3W7Z4" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/TrEMBL:C3W7Z4" FT /protein_id="CAR95942.1" FT /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEVI FT MHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKTSW FT TEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSLQTA FT SFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQTEKRI FT IITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKITPHVL FT RATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI" FT CDS 2224..3579 FT /transl_table=11 FT /locus_tag="PSW4_3" FT /product="putative helicase, DnaB family" FT /db_xref="GOA:C3W7Y7" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR007693" FT /db_xref="InterPro:IPR007694" FT /db_xref="UniProtKB/TrEMBL:C3W7Y7" FT /protein_id="CAR95943.1" FT /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCSH FT HKNIFIVFKYLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVSHT FT VFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSIRSA FT RGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKGNFVI FT IAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGEKLQRG FT DLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFIDYLQLI FT NSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSDLRDSGQI FT EQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKVW" FT CDS 3573..4628 FT /transl_table=11 FT /locus_tag="PSW4_4" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="UniProtKB/TrEMBL:C3W7Z6" FT /protein_id="CAR95944.1" FT /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVIG FT LDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLEAY FT GVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTLSPI FT IRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPANVYQ FT EIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYILRMNRY FT ICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERFEEITKK FT SKEQMEQESIN" FT CDS 4690..5484 FT /transl_table=11 FT /locus_tag="PSW4_5" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="InterPro:IPR008444" FT /db_xref="UniProtKB/TrEMBL:C3W7Y9" FT /protein_id="CAR95945.1" FT /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVAA FT KMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQDI FT LDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSMF FT LVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTPTTYS FT LRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA" FT CDS 5554..5862 FT /transl_table=11 FT /locus_tag="PSW4_6" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="UniProtKB/TrEMBL:C3W7Z0" FT /protein_id="CAR95946.1" FT /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLEL FT YHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE" FT CDS 5890..6684 FT /transl_table=11 FT /locus_tag="PSW4_7" FT /product="putative plasmid partitioning protein, ParA FT family" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:C3W7Z1" FT /protein_id="CAR95947.1" FT /translation="MHTLVFCSFKGGTGKTTLSLNVGCNLAQFLGKKVLLADLDPQSNL FT SSGLGASVRSDQKGLHDIVYTSNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPS FT NNLKLFLNEYCAPFYDICIIDTPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIRE FT FLSSVGKPEEEHILGIALSFWDDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLL FT KEDSVANVYPNSRAAEDILKLTHEIANILHIEYERDYSQRTT" FT CDS 6681..7424 FT /transl_table=11 FT /locus_tag="PSW4_8" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="InterPro:IPR005350" FT /db_xref="UniProtKB/TrEMBL:C3W7Z2" FT /protein_id="CAR95948.1" FT /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQSL FT DRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDHFS FT STTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKGDLK FT TKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEILRIM FT CSGVSLSSYNENLLQQLFELFKQKS" XX SQ Sequence 7493 BP; 2454 A; 1284 C; 1432 G; 2323 T; 0 other; tttgcaactc ttggtggtag actttgcaac tcttggtggt agactttgca actcttggtg 60 gtagactttg caactcttgg tggtagactt ggtcataatg gacttttgtt aaaaaatttc 120 ttaaaatctt agagctccga ttttgaatag ctttggttaa gaaaatgggc tcgatggctt 180 tccataaaag tagattgttt ttaacttttg gggacgcgtc ggaaatttgg ttatctactt 240 tatcttatct aactagaaaa aattatgcgt ctgggattaa ctttcttgtt tctttagaga 300 ttctggattt atcggaaacc ttgataaagg ctatttctct tgaccacagc gaatctttgt 360 ttaaaatcaa gtctctagat gtttttaatg gaaaagttgt ttcagaggca tctaaacagg 420 ctagagcggc atgctacata tctttcacaa agtttttgta tagattgacc aagggatata 480 ttaaacccgc tattccattg aaagattttg gaaacactac attttttaaa atccgagaca 540 aaatcaaaac agaatcgatt tctaagcagg aatggacagt tttttttgaa gcgctccgga 600 tagtgaatta tagagactat ttaatcggta aattgattgt acaagggatc cgtaagttag 660 acgaaatttt gtctttgcgc acagacgatc tattttttgc atccaatcag atttcctttc 720 gcattaaaaa aagacagaat aaagaaacca aaattctaat cacatttcct atcagcttaa 780 tggaagagtt gcaaaaatac acttgtggga gaaatgggag agtatttgtt tctaaaatag 840 ggattcctgt aacaacaagt caggttgcgc ataattttag gcttgcagag ttccatagtg 900 ctatgaaaat aaaaattact cccagagtac ttcgtgcaag cgctttgatt catttaaagc 960 aaataggatt aaaagatgag gaaatcatgc gtatttcctg tctttcatcg agacaaagtg 1020 tgtgttctta ttgttctggg gaagaggtaa ttcctctagt acaaacaccc acaatattgt 1080 gatataatta aaattatatt catattctgt tgccagaaaa aacaccttta ggctatatta 1140 gagccatctt ctttgaagcg ttgtcttctc gagaagattt atcgtacgca aatatcatct 1200 ttgcggttgc gtgtcctgtg accttcatta tgtcggagtc tgagcaccct aggcgtttgt 1260 actccgtcac agcggttgct cgaagcacgt gcggggttat tttaaaaggg attgcagctt 1320 gtagtcctgc ttgagagaac gtgcgggcga tttgccttaa ccccaccatt tttccggagc 1380 gagttacgaa gacaaaacct cttcgttgac cgatgtactc ttgtagaaag tgcataaact 1440 tctgaggata agttataata atcctctttt ctgtctgacg gttcttaagc tgggagaaag 1500 aaatggtagc ttgttggaaa caaatctgac taatctccaa gcttaagact tcagaggagc 1560 gtttacctcc ttggagcatt gtctgggcga tcaaccaatc ccgggcattg atttttttta 1620 gctcttttag gaaggatgct gtttgcaaac tgttcatcgc atccgttttt actatttccc 1680 tggttttaaa aaatgttcga ctattttctt gtttagaagg ttgcgctata gcgactattc 1740 cttgagtcat cctgtttagg aatcttgtta aggaaatata gcttgctgct cgaacttgtt 1800 tagtaccttc ggtccaagaa gtcttggcag aggaaacttt tttaatcgca tctaggatta 1860 gattatgatt taaaagggaa aactcttgca gattcatatc caaggacaat agaccaatct 1920 tttctaaaga caaaaaagat cctcgatatg atctacaagt atgtttgttg agtgatgcgg 1980 tccaatgcat aataacttcg aataaggaga agcttttcat gcgtttccaa taggattctt 2040 ggcgaatttt taaaacttcc tgataagact tttcactata ttctaacgac atttcttgct 2100 gcaaagataa aatcccttta cccatgaaat ccctcgtgat ataacctatc cgtaaaatgt 2160 cctgattagt gaaataatca ggttgttaac aggatagcac gctcggtatt tttttatata 2220 aacatgaaaa ctcgttccga aatagaaaat cgcatgcaag atatcgagta tgcgttgtta 2280 ggtaaagctc tgatatttga agactctact gagtatattc tgaggcagct tgctaattat 2340 gagtttaagt gttctcatca taaaaacata ttcatagtat ttaaatactt aaaagacaat 2400 ggattaccta taactgtaga ctcggcttgg gaagagcttt tgcggcgtcg tatcaaagat 2460 atggacaaat cgtatctcgg gttaatgttg catgatgctt tatcaaatga caagcttaga 2520 tccgtttctc atacggtttt cctcgatgat ttgagcgtgt gtagcgctga agaaaatttg 2580 agtaatttca ttttccgctc gtttaatgag tacaatgaaa atccattgcg tagatctccg 2640 tttctattgc ttgagcgtat aaagggaagg cttgatagtg ctatagcaaa gactttttct 2700 attcgcagcg ctagaggccg gtctatttat gatatattct cacagtcaga aattggagtg 2760 ctggctcgta taaaaaaaag acgagtagcg ttctctgaga atcaaaattc tttctttgat 2820 ggcttcccaa caggatacaa ggatattgat gataaaggag ttatcttagc taaaggtaat 2880 ttcgtgatta tagcagctag accatctata gggaaaacag ctttagctat agacatggcg 2940 ataaatcttg cggttactca acagcgtaga gttggtttcc tatctctaga aatgagcgca 3000 ggtcaaattg ttgagcggat tattgctaat ttaacaggaa tatctggtga aaaattacaa 3060 agaggggatc tctctaaaga agaattattc cgagtagaag aagctggaga aacggttaga 3120 gaatcacatt tttatatctg cagtgatagt cagtataagc ttaacttaat cgcgaatcag 3180 atccggttgc tgagaaaaga agatcgagta gacgtaatat ttatcgatta cttgcagttg 3240 atcaactcat cggttggaga aaatcgtcaa aatgaaatag cagatatatc tagaacctta 3300 agaggtttag cctcagagct aaacattcct atagtttgtt tatcccaact atctagaaaa 3360 gttgaggata gagcaaataa agttcccatg ctttcagatt tgcgagacag cggtcaaata 3420 gagcaagacg cagatgtgat tttgtttatc aataggaagg aatcgtcttc taattgtgag 3480 ataactgttg ggaaaaatag acatggatcg gttttctctt cggtattaca tttcgatcca 3540 aaaattagta aattctccgc tattaaaaaa gtatggtaaa ttatagtaac tgccacttca 3600 tcaaaagtcc tatccacctt gaaaatcaga agtttggaag aagacctggt caatctatta 3660 agatatctcc caaattggct caaaatggga tggtagaagt tataggtctt gattttcttt 3720 catctcatta ccatgcatta gcagctatcc aaagattact gaccgcaacg aattacaagg 3780 ggaacacaaa aggggttgtt ttatccagag aatcaaatag ttttcaattt gaaggatgga 3840 taccaagaat ccgttttaca aaaactgaat tcttagaggc ttatggagtt aagcggtata 3900 aaacatccag aaataagtat gagtttagtg gaaaagaagc tgaaactgct ttagaagcct 3960 tataccattt aggacatcaa ccgtttttaa tagtggcaac tagaactcga tggactaatg 4020 gaacacaaat agtagaccgt taccaaactc tttctccgat cattaggatt tacgaaggat 4080 gggaaggttt aactgacgaa gaaaatatag atatagactt aacacctttt aattcaccac 4140 ctacacggaa acataaaggg ttcgttgtag agccatgtcc tatcttggta gatcaaatag 4200 aatcctactt tgtaatcaag cctgcaaatg tataccaaga aataaaaatg cgtttcccaa 4260 atgcatcaaa gtatgcttac acatttatcg actgggtgat tacagcagct gcgaaaaaga 4320 gacgaaaatt aactaaggat aattcttggc cagaaaactt gttattaaac gttaacgtta 4380 aaagtcttgc atatatttta aggatgaatc ggtacatctg tacaaggaac tggaaaaaaa 4440 tcgagttagc tatcgataaa tgtatagaaa tcgccattca gcttggctgg ttatctagaa 4500 gaaaacgcat tgaatttctg gattcttcta aactctctaa aaaagaaatt ctatatctaa 4560 ataaagagcg ctttgaagaa ataactaaga aatctaaaga acaaatggaa caagaatcta 4620 ttaattaata gcaagcttga aactaaaaac ctaatttatt taaagctcaa aataaaaaag 4680 agttttaaaa tgggaaattc tggtttttat ttgtataaca ctgaaaactg cgtctttgct 4740 gataatatca aagttgggca aatgacagag ccgctcaagg accagcaaat aatccttggg 4800 acaacatcaa cacctgtcgc agccaaaatg acagcttctg atggaatatc tttaacagtc 4860 tccaataatt catcaaccaa tgcttctatt acaattggtt tggatgcgga aaaagcttac 4920 cagcttattc tagaaaagtt gggagatcaa attcttgatg gaattgctga tactattgtt 4980 gatagtacag tccaagatat tttagacaaa atcaaaacag acccttctct aggtttgttg 5040 aaagctttta acaactttcc aatcactaat aaaattcaat gcaacgggtt attcactccc 5100 agtaacattg aaactttatt aggaggaact gaaataggaa aattcacagt cacacccaaa 5160 agctctggga gcatgttctt agtctcagca gatattattg catcaagaat ggaaggcggc 5220 gttgttctag ctttggtacg agaaggtgat tctaagccct gcgcgattag ttatggatac 5280 tcatcaggca ttcctaattt atgtagtcta agaaccagta ttactaatac aggattgact 5340 ccgacaacgt attcattacg tgtaggcggt ttagaaagcg gtgtggtatg ggttaatgcc 5400 ctttctaatg gcaatgatat tttaggaata acaaatactt ctaatgtatc ttttttagag 5460 gtaatacctc aaacaaacgc ttaaacaatt tttattggat ttttcttata ggttttatat 5520 ttagagaaaa cagttcgaat tacggggttt gttatgcaaa ataaaagaaa agtgagggac 5580 gattttatta aaattgttaa agatgtgaaa aaagatttcc ccgaattaga cctaaaaata 5640 cgagtaaaca aggaaaaagt aactttctta aattctccct tagaactcta ccataaaagt 5700 gtctcactaa ttctaggact gcttcaacaa atagaaaact ctttaggatt attcccagac 5760 tctcctgttc ttgaaaaatt agaggataac agtttaaagc taaaaaaggc tttgattatg 5820 cttatcttgt ctagaaaaga catgttttcc aaggctgaat agacaactta ctctaacgtt 5880 ggagttgatt tgcacacctt agttttttgc tcttttaagg gaggaactgg aaaaacaaca 5940 ctttctctaa acgtgggatg caacttggcc caatttttag ggaaaaaagt gttacttgct 6000 gacctagacc cgcaatccaa tttatcttct ggattggggg ctagtgtcag aagtgaccaa 6060 aaaggcttgc acgacatagt atacacatca aacgatttaa aatcaatcat ttgcgaaaca 6120 aaaaaagata gtgtggacct aattcctgca tcattttcat ccgaacagtt tagagaattg 6180 gatattcata gaggacctag taacaactta aagttatttc tgaatgagta ctgcgctcct 6240 ttttatgaca tctgcataat agacactcca cctagcctag gagggttaac gaaagaagct 6300 tttgttgcag gagacaaatt aattgcttgt ttaactccag aacctttttc tattctaggg 6360 ttacaaaaga tacgtgaatt cttaagttcg gtcggaaaac ctgaagaaga acacattctt 6420 ggaatagctt tgtctttttg ggatgatcgt aactcgacta accaaatgta tatagacatt 6480 atcgagtcta tttacaaaaa caagcttttt tcaacaaaaa ttcgtcgaga tatttctctc 6540 agccgttctc ttcttaaaga agattctgta gctaatgtct atccaaattc tagggccgca 6600 gaagatattc tgaagttaac gcatgaaata gcaaatattt tgcatatcga atatgaacga 6660 gattactctc agaggacaac gtgaacaaac taaaaaaaga agcggatgtc ttttttaaaa 6720 aaaatcaaac tgccgcttct ctagatttta agaagacgct tccctccatt gaactattct 6780 cagcaacttt gaattctgag gaaagtcaga gtttggatcg attattttta tcagagtccc 6840 aaaactattc ggatgaagaa ttttatcaag aagacatcct agcggtaaaa ctgcttactg 6900 gtcagataaa atccatacag aagcaacacg tacttctttt aggagaaaaa atctataatg 6960 ctagaaaaat cctgagtaag gatcacttct cctcaacaac tttttcatct tggatagagt 7020 tagtttttag aactaagtct tctgcttaca atgctcttgc atattacgag ctttttataa 7080 acctccccaa ccaaactcta caaaaagagt ttcaatcgat cccctataaa tccgcatata 7140 ttttggccgc tagaaaaggc gatttaaaaa ccaaggtcga tgtgataggg aaagtatgtg 7200 gaatgtcgaa ctcatcggcg ataagggtgt tggatcaatt tcttccttca tctagaaaca 7260 aagacgttag agaaacgata gataagtctg attcagagaa gaatcgccaa ttatctgatt 7320 tcttaataga gatacttcgc atcatgtgtt ccggagtttc tttgtcctcc tataacgaaa 7380 atcttctaca acagcttttt gaacttttta agcaaaagag ctgatcctcc gtcagctcat 7440 atatatatat ctattatata tatatattta gggatttgat ttcacgagag aga 7493 //