ID FM865440; SV 1; circular; genomic DNA; STD; PRO; 7502 BP. XX AC FM865440; XX PR Project:PRJEA32373; XX DT 28-APR-2009 (Rel. 100, Created) DT 10-JUN-2009 (Rel. 101, Last updated, Version 3) XX DE Chlamydia trachomatis plasmid pSW3, strain Sweden3, serovar E XX KW . XX OS Chlamydia trachomatis OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; OC Chlamydia/Chlamydophila group; Chlamydia. OG Plasmid pSW3 XX RN [1] RP 1-7502 RA Seth-Smith H.M.; RT ; RL Submitted (28-OCT-2008) to the INSDC. RL Seth-Smith H.M., Pathogen Genomics, Wellcome Trust Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UNITED KINGDOM. XX RN [2] RX DOI; 10.1186/1471-2164-10-239. RX PUBMED; 19460133. RA Seth-Smith H.M., Harris S.R., Persson K., Marsh P., Barron A., Bignell A., RA Bjartling C., Clark L., Cutcliffe L.T., Lambden P.R., Lennard N., RA Lockey S.J., Quail M.A., Salim O., Skilton R.J., Wang Y., Holland M.J., RA Parkhill J., Thomson N.R., Clarke I.N.; RT "Co-evolution of genomes and plasmids within Chlamydia trachomatis and the RT emergence in Sweden of a new variant strain"; RL BMC Genomics 10(1):239-239(2009). XX FH Key Location/Qualifiers FH FT source 1..7502 FT /organism="Chlamydia trachomatis" FT /plasmid="pSW3" FT /strain="Sweden3" FT /mol_type="genomic DNA" FT /serovar="E" FT /db_xref="taxon:813" FT rep_origin 1..88 FT /note="putative origin of replication; contains 4 copies of FT a 22bp repeat" FT CDS 165..1082 FT /transl_table=11 FT /locus_tag="PSW3_1" FT /product="putative virulence plasmid integrase" FT /db_xref="GOA:C3W7Y5" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/TrEMBL:C3W7Y5" FT /protein_id="CAR95933.1" FT /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSLE FT ILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLTKG FT YIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQGIR FT KLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNGRVFV FT SKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMRISCLS FT SRQSVCSYCSGEEVIPLVQTPTIL" FT CDS complement(1133..2125) FT /transl_table=11 FT /locus_tag="PSW3_2" FT /product="putative virulence plasmid integrase" FT /db_xref="GOA:C3W7Y6" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/TrEMBL:C3W7Y6" FT /protein_id="CAR95934.1" FT /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEVI FT MHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKTSW FT TEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSLQTA FT SFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQTEKRI FT IITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKITPHVL FT RATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKLALI" FT CDS 2224..3579 FT /transl_table=11 FT /locus_tag="PSW3_3" FT /product="putative helicase, DnaB family" FT /db_xref="GOA:C3W7Y7" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR007693" FT /db_xref="InterPro:IPR007694" FT /db_xref="UniProtKB/TrEMBL:C3W7Y7" FT /protein_id="CAR95935.1" FT /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCSH FT HKNIFIVFKYLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVSHT FT VFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSIRSA FT RGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKGNFVI FT IAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGEKLQRG FT DLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFIDYLQLI FT NSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSDLRDSGQI FT EQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKVW" FT CDS 3573..4637 FT /transl_table=11 FT /locus_tag="PSW3_4" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="UniProtKB/TrEMBL:C3W7Y8" FT /protein_id="CAR95936.1" FT /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVIG FT LDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLEAY FT GVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTLSPI FT IRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPANVYQ FT EIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYILRMNRY FT ICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERFEEITKK FT SKEQMEQLEQESIN" FT CDS 4699..5493 FT /transl_table=11 FT /locus_tag="PSW3_5" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="InterPro:IPR008444" FT /db_xref="UniProtKB/TrEMBL:C3W7Y9" FT /protein_id="CAR95937.1" FT /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVAA FT KMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQDI FT LDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSMF FT LVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTPTTYS FT LRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA" FT CDS 5563..5871 FT /transl_table=11 FT /locus_tag="PSW3_6" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="UniProtKB/TrEMBL:C3W7Z0" FT /protein_id="CAR95938.1" FT /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLEL FT YHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE" FT CDS 5899..6693 FT /transl_table=11 FT /locus_tag="PSW3_7" FT /product="putative plasmid partitioning protein, ParA FT family" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:C3W7Z1" FT /protein_id="CAR95939.1" FT /translation="MHTLVFCSFKGGTGKTTLSLNVGCNLAQFLGKKVLLADLDPQSNL FT SSGLGASVRSDQKGLHDIVYTSNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPS FT NNLKLFLNEYCAPFYDICIIDTPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIRE FT FLSSVGKPEEEHILGIALSFWDDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLL FT KEDSVANVYPNSRAAEDILKLTHEIANILHIEYERDYSQRTT" FT CDS 6690..7433 FT /transl_table=11 FT /locus_tag="PSW3_8" FT /product="conserved hypothetical virulence plasmid protein" FT /db_xref="InterPro:IPR005350" FT /db_xref="UniProtKB/TrEMBL:C3W7Z2" FT /protein_id="CAR95940.1" FT /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQSL FT DRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDHFS FT STTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKGDLK FT TKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEILRIM FT CSGVSLSSYNENLLQQLFELFKQKS" XX SQ Sequence 7502 BP; 2459 A; 1285 C; 1434 G; 2324 T; 0 other; tttgcaactc ttggtggtag actttgcaac tcttggtggt agactttgca actcttggtg 60 gtagactttg caactcttgg tggtagactt ggtcataatg gacttttgtt aaaaaatttc 120 ttaaaatctt agagctccga ttttgaatag ctttggttaa gaaaatgggc tcgatggctt 180 tccataaaag tagattgttt ttaacttttg gggacgcgtc ggaaatttgg ttatctactt 240 tatcttatct aactagaaaa aattatgcgt ctgggattaa ctttcttgtt tctttagaga 300 ttctggattt atcggaaacc ttgataaagg ctatttctct tgaccacagc gaatctttgt 360 ttaaaatcaa gtctctagat gtttttaatg gaaaagttgt ttcagaggca tctaaacagg 420 ctagagcggc atgctacata tctttcacaa agtttttgta tagattgacc aagggatata 480 ttaaacccgc tattccattg aaagattttg gaaacactac attttttaaa atccgagaca 540 aaatcaaaac agaatcgatt tctaagcagg aatggacagt tttttttgaa gcgctccgga 600 tagtgaatta tagagactat ttaatcggta aattgattgt acaagggatc cgtaagttag 660 acgaaatttt gtctttgcgc acagacgatc tattttttgc atccaatcag atttcctttc 720 gcattaaaaa aagacagaat aaagaaacca aaattctaat cacatttcct atcagcttaa 780 tggaagagtt gcaaaaatac acttgtggga gaaatgggag agtatttgtt tctaaaatag 840 ggattcctgt aacaacaagt caggttgcgc ataattttag gcttgcagag ttccatagtg 900 ctatgaaaat aaaaattact cccagagtac ttcgtgcaag cgctttgatt catttaaagc 960 aaataggatt aaaagatgag gaaatcatgc gtatttcctg tctttcatcg agacaaagtg 1020 tgtgttctta ttgttctggg gaagaggtaa ttcctctagt acaaacaccc acaatattgt 1080 gatataatta aaattatatt catattctgt tgccagaaaa aacaccttta ggctatatta 1140 gagccagctt ctttgaagcg ttgtcttctc gagaagattt atcgtacgca aatatcatct 1200 ttgcggttgc gtgtcctgtg accttcatta tgtcggagtc tgagcaccct aggcgtttgt 1260 actccgtcac agcggttgct cgaagcacgt gcggggttat tttaaaaggg attgcagctt 1320 gtagtcctgc ttgagagaac gtgcgggcga tttgccttaa ccccaccatt tttccggagc 1380 gagttacgaa gacaaaacct cttcgttgac cgatgtactc ttgtagaaag tgcataaact 1440 tctgaggata agttataata atcctctttt ctgtctgacg gttcttaagc tgggagaaag 1500 aaatggtagc ttgttggaaa caaatctgac taatctccaa gcttaagact tcagaggagc 1560 gtttacctcc ttggagcatt gtctgggcga tcaaccaatc ccgggcattg atttttttta 1620 gctcttttag gaaggatgct gtttgcaaac tgttcatcgc atccgttttt actatttccc 1680 tggttttaaa aaatgttcga ctattttctt gtttagaagg ttgcgctata gcgactattc 1740 cttgagtcat cctgtttagg aatcttgtta aggaaatata gcttgctgct cgaacttgtt 1800 tagtaccttc ggtccaagaa gtcttggcag aggaaacttt tttaatcgca tctaggatta 1860 gattatgatt taaaagggaa aactcttgca gattcatatc caaggacaat agaccaatct 1920 tttctaaaga caaaaaagat cctcgatatg atctacaagt atgtttgttg agtgatgcgg 1980 tccaatgcat aataacttcg aataaggaga agcttttcat gcgtttccaa taggattctt 2040 ggcgaatttt taaaacttcc tgataagact tttcactata ttctaacgac atttcttgct 2100 gcaaagataa aatcccttta cccatgaaat ccctcgtgat ataacctatc cgtaaaatgt 2160 cctgattagt gaaataatca ggttgttaac aggatagcac gctcggtatt tttttatata 2220 aacatgaaaa ctcgttccga aatagaaaat cgcatgcaag atatcgagta tgcgttgtta 2280 ggtaaagctc tgatatttga agactctact gagtatattc tgaggcagct tgctaattat 2340 gagtttaagt gttctcatca taaaaacata ttcatagtat ttaaatactt aaaagacaat 2400 ggattaccta taactgtaga ctcggcttgg gaagagcttt tgcggcgtcg tatcaaagat 2460 atggacaaat cgtatctcgg gttaatgttg catgatgctt tatcaaatga caagcttaga 2520 tccgtttctc atacggtttt cctcgatgat ttgagcgtgt gtagcgctga agaaaatttg 2580 agtaatttca ttttccgctc gtttaatgag tacaatgaaa atccattgcg tagatctccg 2640 tttctattgc ttgagcgtat aaagggaagg cttgatagtg ctatagcaaa gactttttct 2700 attcgcagcg ctagaggccg gtctatttat gatatattct cacagtcaga aattggagtg 2760 ctggctcgta taaaaaaaag acgagtagcg ttctctgaga atcaaaattc tttctttgat 2820 ggcttcccaa caggatacaa ggatattgat gataaaggag ttatcttagc taaaggtaat 2880 ttcgtgatta tagcagctag accatctata gggaaaacag ctttagctat agacatggcg 2940 ataaatcttg cggttactca acagcgtaga gttggtttcc tatctctaga aatgagcgca 3000 ggtcaaattg ttgagcggat tattgctaat ttaacaggaa tatctggtga aaaattacaa 3060 agaggggatc tctctaaaga agaattattc cgagtagaag aagctggaga aacggttaga 3120 gaatcacatt tttatatctg cagtgatagt cagtataagc ttaacttaat cgcgaatcag 3180 atccggttgc tgagaaaaga agatcgagta gacgtaatat ttatcgatta cttgcagttg 3240 atcaactcat cggttggaga aaatcgtcaa aatgaaatag cagatatatc tagaacctta 3300 agaggtttag cctcagagct aaacattcct atagtttgtt tatcccaact atctagaaaa 3360 gttgaggata gagcaaataa agttcccatg ctttcagatt tgcgagacag cggtcaaata 3420 gagcaagacg cagatgtgat tttgtttatc aataggaagg aatcgtcttc taattgtgag 3480 ataactgttg ggaaaaatag acatggatcg gttttctctt cggtattaca tttcgatcca 3540 aaaattagta aattctccgc tattaaaaaa gtatggtaaa ttatagtaac tgccacttca 3600 tcaaaagtcc tatccacctt gaaaatcaga agtttggaag aagacctggt caatctatta 3660 agatatctcc caaattggct caaaatggga tggtagaagt tataggtctt gattttcttt 3720 catctcatta ccatgcatta gcagctatcc aaagattact gaccgcaacg aattacaagg 3780 ggaacacaaa aggggttgtt ttatccagag aatcaaatag ttttcaattt gaaggatgga 3840 taccaagaat ccgttttaca aaaactgaat tcttagaggc ttatggagtt aagcggtata 3900 aaacatccag aaataagtat gagtttagtg gaaaagaagc tgaaactgct ttagaagcct 3960 tataccattt aggacatcaa ccgtttttaa tagtggcaac tagaactcga tggactaatg 4020 gaacacaaat agtagaccgt taccaaactc tttctccgat cattaggatt tacgaaggat 4080 gggaaggttt aactgacgaa gaaaatatag atatagactt aacacctttt aattcaccac 4140 ctacacggaa acataaaggg ttcgttgtag agccatgtcc tatcttggta gatcaaatag 4200 aatcctactt tgtaatcaag cctgcaaatg tataccaaga aataaaaatg cgtttcccaa 4260 atgcatcaaa gtatgcttac acatttatcg actgggtgat tacagcagct gcgaaaaaga 4320 gacgaaaatt aactaaggat aattcttggc cagaaaactt gttattaaac gttaacgtta 4380 aaagtcttgc atatatttta aggatgaatc ggtacatctg tacaaggaac tggaaaaaaa 4440 tcgagttagc tatcgataaa tgtatagaaa tcgccattca gcttggctgg ttatctagaa 4500 gaaaacgcat tgaatttctg gattcttcta aactctctaa aaaagaaatt ctatatctaa 4560 ataaagagcg ctttgaagaa ataactaaga aatctaaaga acaaatggaa caattagaac 4620 aagaatctat taattaatag caagcttgaa actaaaaacc taatttattt aaagctcaaa 4680 ataaaaaaga gttttaaaat gggaaattct ggtttttatt tgtataacac tgaaaactgc 4740 gtctttgctg ataatatcaa agttgggcaa atgacagagc cgctcaagga ccagcaaata 4800 atccttggga caacatcaac acctgtcgca gccaaaatga cagcttctga tggaatatct 4860 ttaacagtct ccaataattc atcaaccaat gcttctatta caattggttt ggatgcggaa 4920 aaagcttacc agcttattct agaaaagttg ggagatcaaa ttcttgatgg aattgctgat 4980 actattgttg atagtacagt ccaagatatt ttagacaaaa tcaaaacaga cccttctcta 5040 ggtttgttga aagcttttaa caactttcca atcactaata aaattcaatg caacgggtta 5100 ttcactccca gtaacattga aactttatta ggaggaactg aaataggaaa attcacagtc 5160 acacccaaaa gctctgggag catgttctta gtctcagcag atattattgc atcaagaatg 5220 gaaggcggcg ttgttctagc tttggtacga gaaggtgatt ctaagccctg cgcgattagt 5280 tatggatact catcaggcat tcctaattta tgtagtctaa gaaccagtat tactaataca 5340 ggattgactc cgacaacgta ttcattacgt gtaggcggtt tagaaagcgg tgtggtatgg 5400 gttaatgccc tttctaatgg caatgatatt ttaggaataa caaatacttc taatgtatct 5460 tttttagagg taatacctca aacaaacgct taaacaattt ttattggatt tttcttatag 5520 gttttatatt tagagaaaac agttcgaatt acggggtttg ttatgcaaaa taaaagaaaa 5580 gtgagggacg attttattaa aattgttaaa gatgtgaaaa aagatttccc cgaattagac 5640 ctaaaaatac gagtaaacaa ggaaaaagta actttcttaa attctccctt agaactctac 5700 cataaaagtg tctcactaat tctaggactg cttcaacaaa tagaaaactc tttaggatta 5760 ttcccagact ctcctgttct tgaaaaatta gaggataaca gtttaaagct aaaaaaggct 5820 ttgattatgc ttatcttgtc tagaaaagac atgttttcca aggctgaata gacaacttac 5880 tctaacgttg gagttgattt gcacacctta gttttttgct cttttaaggg aggaactgga 5940 aaaacaacac tttctctaaa cgtgggatgc aacttggccc aatttttagg gaaaaaagtg 6000 ttacttgctg acctagaccc gcaatccaat ttatcttctg gattgggggc tagtgtcaga 6060 agtgaccaaa aaggcttgca cgacatagta tacacatcaa acgatttaaa atcaatcatt 6120 tgcgaaacaa aaaaagatag tgtggaccta attcctgcat cattttcatc cgaacagttt 6180 agagaattgg atattcatag aggacctagt aacaacttaa agttatttct gaatgagtac 6240 tgcgctcctt tttatgacat ctgcataata gacactccac ctagcctagg agggttaacg 6300 aaagaagctt ttgttgcagg agacaaatta attgcttgtt taactccaga acctttttct 6360 attctagggt tacaaaagat acgtgaattc ttaagttcgg tcggaaaacc tgaagaagaa 6420 cacattcttg gaatagcttt gtctttttgg gatgatcgta actcgactaa ccaaatgtat 6480 atagacatta tcgagtctat ttacaaaaac aagctttttt caacaaaaat tcgtcgagat 6540 atttctctca gccgttctct tcttaaagaa gattctgtag ctaatgtcta tccaaattct 6600 agggccgcag aagatattct gaagttaacg catgaaatag caaatatttt gcatatcgaa 6660 tatgaacgag attactctca gaggacaacg tgaacaaact aaaaaaagaa gcggatgtct 6720 tttttaaaaa aaatcaaact gccgcttctc tagattttaa gaagacgctt ccctccattg 6780 aactattctc agcaactttg aattctgagg aaagtcagag tttggatcga ttatttttat 6840 cagagtccca aaactattcg gatgaagaat tttatcaaga agacatccta gcggtaaaac 6900 tgcttactgg tcagataaaa tccatacaga agcaacacgt acttctttta ggagaaaaaa 6960 tctataatgc tagaaaaatc ctgagtaagg atcacttctc ctcaacaact ttttcatctt 7020 ggatagagtt agtttttaga actaagtctt ctgcttacaa tgctcttgca tattacgagc 7080 tttttataaa cctccccaac caaactctac aaaaagagtt tcaatcgatc ccctataaat 7140 ccgcatatat tttggccgct agaaaaggcg atttaaaaac caaggtcgat gtgataggga 7200 aagtatgtgg aatgtcgaac tcatcggcga taagggtgtt ggatcaattt cttccttcat 7260 ctagaaacaa agacgttaga gaaacgatag ataagtctga ttcagagaag aatcgccaat 7320 tatctgattt cttaatagag atacttcgca tcatgtgttc cggagtttct ttgtcctcct 7380 ataacgaaaa tcttctacaa cagctttttg aactttttaa gcaaaagagc tgatcctccg 7440 tcagctcata tatatatatc tattatatat atatatttag ggatttgatt tcacgagaga 7500 ga 7502 //