ID FM178384; SV 1; circular; genomic DNA; STD; PRO; 4327 BP. XX AC FM178384; AY876911; XX PR Project:PRJEA30703; XX DT 01-OCT-2008 (Rel. 97, Created) DT 13-MAY-2009 (Rel. 100, Last updated, Version 5) XX DE Aliivibrio salmonicida LFI1238 plasmid pVSAL43 complete genome XX KW complete genome. XX OS Aliivibrio salmonicida LFI1238 OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; OC Aliivibrio. OG Plasmid pVSAL43 XX RN [1] RP 1-4327 RA Hjerde E.; RT ; RL Submitted (26-JUN-2008) to the INSDC. RL Hjerde E., Department of Molecular Biotechnology, University of Tromso, RL Breivika, 9037 Tromso, NORWAY. XX RN [2] RX DOI; 10.1186/1471-2164-9-616. RX PUBMED; 19099551. RA Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., RA Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., RA Thurston S., Parkhill J., Willassen N.P., Thomson N.R.; RT "The genome sequence of the fish pathogen Aliivibrio salmonicida strain RT LFI1238 shows extensive evidence of gene decay"; RL BMC Genomics 9:616-616(2008). XX DR ENA; ERS000076. DR GR; FM178384_GR. DR StrainInfo; 379913; 0. XX FH Key Location/Qualifiers FH FT source 1..4327 FT /organism="Aliivibrio salmonicida LFI1238" FT /plasmid="pVSAL43" FT /strain="LFI1238" FT /mol_type="genomic DNA" FT /country="Norway:Hammerfest" FT /isolation_source="Atlantic cod" FT /db_xref="taxon:316275" FT CDS 281..940 FT /transl_table=11 FT /gene="repA" FT /locus_tag="VSAL_p43_01" FT /old_locus_tag="pVSAL43_01" FT /product="putative replication initiation protein" FT /db_xref="GOA:B6ET77" FT /db_xref="InterPro:IPR000525" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:B6ET77" FT /protein_id="CAQ76621.1" FT /translation="MNNLSVTKSNNLVDASYKLNVQAQKLILACLGKIDSRAEIPNEIT FT ITAIEYGDLMGISNARRDLYKAADHLFDAVITLKDNNEEIKLRWVQKSVLKKKGEGSVT FT ITWSDDVLKYISVLKNRFTTYKLRHISELKSGHSIRLYELLMRFNSTGARIISIADFKS FT ALGVSDKYPQFKELTRRVINPAIDELNKSSDLIVQYESLKKGKTVTALAFSFTQKD" FT misc_feature 281..925 FT /gene="repA" FT /locus_tag="VSAL_p43_01" FT /old_locus_tag="pVSAL43_01" FT /note="HMMPfam hit to PF01051, Initiator Replication FT protein, score 3e-54" FT /inference="protein motif:HMMPfam:PF01051" FT CDS complement(1028..1993) FT /transl_table=11 FT /locus_tag="VSAL_p43_02" FT /old_locus_tag="pVSAL43_02" FT /product="acetyltransferase" FT /EC_number="2.3.1.-" FT /note="Weakly similar to Bacteriophage Sf6 O-acetyl FT transferase UniProt:P23214 (333 aa) fasta scores: FT E()=4.2e-11, 28.614% id in 339 aa" FT /db_xref="GOA:B6ET78" FT /db_xref="InterPro:IPR002656" FT /db_xref="UniProtKB/TrEMBL:B6ET78" FT /inference="similar to sequence:UniProt:P23214" FT /protein_id="CAQ76622.1" FT /translation="MIKNNFDILRIVLALIVMLFHIGGLANIPVLTFFPGGLAVKCFFV FT ISGFLITKSYLKNNGIKTYIKSRFMRVYPLYFVVIITSFLIGLVITSYDYHTYLVESLR FT YLASNLVFLNFLQPTLPGVFTDIGNHSAVNGSLWTIKVEVMFYISIPIIYGFFTKFFSK FT EKLTILIFILSVSCFYVLSYIINEYGLNKSVNNQLPSLMSYFMVGAYLSFVGLNSKYIK FT GLLLPSLLGIYSSIELFMPLSVGILTAYLAFYTPQIKVDKKVGDLSYGIYIWHFPVIQL FT YLYLGLFSSPLLGVFMVTLTVGALAYISWHYLENRIIHRY" FT misc_feature complement(1034..1987) FT /locus_tag="VSAL_p43_02" FT /old_locus_tag="pVSAL43_02" FT /note="HMMPfam hit to PF01757, Acyltransferase family,score FT 1.6e-25" FT /inference="protein motif:HMMPfam:PF01757" FT misc_feature complement(order(1055..1123,1136..1195,1232..1300, FT 1343..1402,1439..1498,1526..1585,1622..1681,1709..1777, FT 1838..1906,1916..1975)) FT /locus_tag="VSAL_p43_02" FT /old_locus_tag="pVSAL43_02" FT repeat_region 2094..3532 FT /note="VSa9" FT CDS 2287..3366 FT /transl_table=11 FT /locus_tag="VSAL_p43_03" FT /old_locus_tag="pVSAL43_03" FT /product="transposase, IS91 family" FT /db_xref="GOA:B6EMI2" FT /db_xref="InterPro:IPR007069" FT /db_xref="UniProtKB/TrEMBL:B6EMI2" FT /protein_id="CAQ76623.1" FT /translation="MLSCGTAAFGSREYHCCNPDCTHIKYIHQTCKSRACSSCGMKATE FT RWIQKQQHVFPECEYQHITFTLPNTLWPIFRHNRWLLNKLFKCAANILLGWAKDKGIDV FT GIFCALHTYGRKLNWNTHLHLSVTRGGICERTGLWKPIYFQMKTTEPCWRAAIVSLLGK FT AYYELDLSSEECPYIRNKTDWSRFLSSQYNRRWKLHFAKKTNNVKPTMNYLGRYLKRPP FT ISASRLSHYAKGGMITFNYLDHRTGTTDSLTLSPEEMIRRIVEHYPDKHFKMIRYYGFL FT SMRRRGEALPRVYAALGMTIEAEPKMPGYAAMLKGYVKVDPYECILCESRLVFTNFRVG FT NSVNDLVTHAIVQSELRAA" FT misc_feature 2599..3156 FT /locus_tag="VSAL_p43_03" FT /old_locus_tag="pVSAL43_03" FT /note="HMMPfam hit to PF04986, Putative transposase, score FT 6.2e-49" FT /inference="protein motif:HMMPfam:PF04986" XX SQ Sequence 4327 BP; 1537 A; 771 C; 770 G; 1249 T; 0 other; gtctaaatag ttatttatcc acaggcgttt tcctttttaa tctttcttgt ttatagatct 60 ttcttgtttt tagcatcgct gtagcccttg ctgcataagg gctacagcga tattaggtgt 120 acaaattgac acgctaaacg acggtttagg tgtacaaatt gacacgctaa atggcttttt 180 aggtgtacaa attgacacgc taactcacaa agttgggtgt acgtcgtttt agttcgtaca 240 cttatgtgta tagtgaataa aaaaatagac tggtttaaat atgaataatc tctcagtaac 300 caaatcaaat aatcttgtag atgcgagtta taaattaaat gttcaagcac aaaaacttat 360 tttagcctgc ttagggaaaa tagattctag agctgaaatt cctaacgaaa ttactattac 420 cgcaatagaa tatggtgatt taatgggtat tagtaatgcg cggagagatc tatataaagc 480 ggcggatcat ctctttgatg cggtaataac attaaaagat aataacgaag aaataaagtt 540 aagatgggtt caaaaaagtg tactaaaaaa gaaaggtgag ggttctgtta ctattacatg 600 gtctgatgat gttttaaaat atattagcgt acttaaaaat agatttacta catacaaatt 660 gcggcatata tccgaattga aatcaggaca ttccattcga ctgtatgagt tattaatgcg 720 atttaattct actggggcta gaattatttc tattgctgat tttaaatcgg cattaggtgt 780 tagtgataaa taccctcaat ttaaagaatt aacacgtagg gttatcaacc cagctattga 840 tgaattaaat aaaagtagtg atcttatcgt tcaatatgaa tcccttaaaa agggtaaaac 900 agtaactgct ttagcattct cgtttacaca aaaggattaa gtttattgat tgataaccat 960 aaacttaata ctagaaaagg tcgccaattt taggcgacct ttgcggttcg tgatacgagc 1020 attatgttca ataacgatga ataatcctat tttctaagta atgccagctt atataagcta 1080 aagctccaac agttaaagta accataaata cacccaatag cggagaagag aacaacccta 1140 agtatagata aagctgaatt actggaaaat gccaaatata aatgccatat gataaatctc 1200 ccaccttttt atcaacttta atttgcggtg tatagaaagc aagataagca gtcaagatcc 1260 caactgacag tggcataaat aattctatac tagagtatat acccaggagg gaaggcagga 1320 gtaagccttt gatatacttg gaatttaaac caacaaaact taagtatgcc cctaccataa 1380 aataagacat gagtgatggt agttgattgt taacagattt gttcaaacca tattcgttaa 1440 taatgtacga taagacataa aagcaagaaa cagacagtat aaaaattaaa atcgttagtt 1500 tttcttttga aaagaacttt gtgaaaaaac cataaataat tggtatagat atataaaaca 1560 taacttcaac tttgattgtc caaagcgatc cattaacagc actatggttg cctatatcag 1620 taaaaacacc tggtaatgtg ggttgaagga agtttaaaaa aacaaggtta gaagctaagt 1680 atctcaacga ctccaccaag taagtatgat aatcgtaaga tgtaattact aagccaatca 1740 aaaatgaagt gataataacc acaaaatata atggatagac cctcataaac ctagatttta 1800 tataagtttt tataccatta ttttttaaat aactctttgt gatcaaaaaa ccacttatta 1860 caaagaagca cttaacagcc aaacctcctg gaaaaaacgt caaaacaggt atgtttgcca 1920 acccgccaat atgaaaaagc atcacaatta atgctagaac aatccttaat atatcaaaat 1980 tattttttat cattactaaa agactataga aaaaagttag ttcacattgt atagccttac 2040 gacaagcaat tatagataac acaagggaat acatgcgtga tatgcccctt atggaacaat 2100 aggcgcctac ggcgcaaatc aaaaggactc aacctcttcc attgttgcca ataaatcgtt 2160 tatcctatcg ccatgcacgc atataaaccc ctgaaacaat tatttaatag tcaaaataac 2220 tggcttaaat ttcttcataa taacaaagct aacctaagag cggtcgtgat tgaaaatgtc 2280 acaaagatgc tgtcctgtgg gacagcggct tttggctctc gcgaatatca ttgttgcaac 2340 cctgactgta cccatatcaa atatattcac caaacctgta aatctcgagc gtgcagtagc 2400 tgtggcatga aagccacaga gcgatggata caaaagcaac aacatgtctt ccctgaatgc 2460 gaatatcaac acatcacctt tacccttcca aacacgctat ggcctatctt tcgtcataac 2520 cgttggctgt taaataaatt attcaaatgt gctgcaaaca ttctgctggg atgggcaaaa 2580 gataaaggaa tagatgtcgg tatcttttgt gctcttcata cttacggtcg aaaactgaat 2640 tggaatacgc acttacattt atcggtcact cgtgggggaa tttgtgaacg taccggttta 2700 tggaaaccca tttacttcca aatgaaaacg acagagcctt gttggagagc ggctatcgtc 2760 agtttattgg gtaaggctta ttatgagctt gatttatcaa gcgaagaatg cccctatatc 2820 cgtaataaaa cggattggtc acgcttttta agcagtcaat ataatcgtcg ttggaagctt 2880 cattttgcta aaaagacaaa taatgtaaaa ccgacgatga actatcttgg tcggtattta 2940 aaacggcccc caatttcagc gtcacgttta agtcattacg ccaaaggcgg aatgataacg 3000 tttaattatt tagaccatcg aacaggaaca acagacagcc taacattatc accagaagag 3060 atgataagac ggatagtaga gcactatcct gataaacatt tcaagatgat ccgatactac 3120 ggttttttat caatgcgtcg tcgtggagaa gctctgccta gagtttatgc agctttaggt 3180 atgacaatag aagctgagcc gaaaatgcca gggtatgccg caatgttaaa aggatatgta 3240 aaagtagatc cgtacgaatg tattttatgt gaaagtcgtc tggtgtttac gaatttccga 3300 gtcggaaatt cggtcaatga tttagtcacc catgcgatag ttcagtcaga attgagggca 3360 gcataataag gtttgtagga taagtgtatc taaaactcat gaaatagggc taaaacagtt 3420 ataaaatccc cgataattat attttcgata ccttttaaaa aaacagcgat ggtgaaattg 3480 gcttttttag acgggccaat gctaactcag caacattcaa attccttacc ttcaagtatg 3540 ttaccgaaat taatttgacc aattttaacc cgactaaata taatcgttag aaaaagaact 3600 tattccatac acgaaaagca tctaacaaaa ttcaaaacgc atttaatatt tgttcaagat 3660 cgaggatata tttaactcaa aagaagcaaa aaacacgatc actaaaaaat ggccacaaaa 3720 gataaaaaat accgcaaaat ataccaatag aaacagtgat ttatcatttt ttgaggcgtc 3780 tcattaaaaa acagctcaaa aaacaggcac gacaggagtg tttacacttt aaaacttcgt 3840 tttagcgtca ctccctgtgc caaagggtag cccctttgaa accctttttt actccgcatt 3900 ttgacatccg ttttaatcat aatttcagat attgaaaacg ttattttaag agcatcttcg 3960 tagggcgcga ggtgactttt ttagatgggg ttattttgga gaacgcgctc gactttactg 4020 cgcgcatttc gatattggca aaaagcgcct agtatctacg atgttccaaa caagagcatt 4080 acccgtcatt caaaatcaat tctaaggcac atagatgcca tgtagacagc tataacacta 4140 aaaagacata actatgtacc ctttcgttaa tctaacggcc ttagagagct ttacagctct 4200 aaaaaacaaa aaaagaaaat ttattgagcg cggagcgcaa actcaaagcg acaaaacagg 4260 tcaattgacg attgtgggca atgtgtttga taacatgctc catcgttatc aaaacttgcc 4320 catgtga 4327 //