ID FM178383; SV 1; circular; genomic DNA; STD; PRO; 5360 BP. XX AC FM178383; AY876910; XX PR Project:PRJEA30703; XX DT 01-OCT-2008 (Rel. 97, Created) DT 13-MAY-2009 (Rel. 100, Last updated, Version 7) XX DE Aliivibrio salmonicida LFI1238 plasmid pVSAL54 complete genome XX KW complete genome. XX OS Aliivibrio salmonicida LFI1238 OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; OC Aliivibrio. OG Plasmid pVSAL54 XX RN [1] RP 1-5360 RA Hjerde E.; RT ; RL Submitted (26-JUN-2008) to the INSDC. RL Hjerde E., Department of Molecular Biotechnology, University of Tromso, RL Breivika, 9037 Tromso, NORWAY. XX RN [2] RX DOI; 10.1186/1471-2164-9-616. RX PUBMED; 19099551. RA Hjerde E., Lorentzen M.S., Holden M.T., Seeger K., Paulsen S., Bason N., RA Churcher C., Harris D., Norbertczak H., Quail M.A., Sanders S., RA Thurston S., Parkhill J., Willassen N.P., Thomson N.R.; RT "The genome sequence of the fish pathogen Aliivibrio salmonicida strain RT LFI1238 shows extensive evidence of gene decay"; RL BMC Genomics 9:616-616(2008). XX DR ENA; ERS000076. DR GR; FM178383_GR. DR StrainInfo; 379913; 0. XX FH Key Location/Qualifiers FH FT source 1..5360 FT /organism="Aliivibrio salmonicida LFI1238" FT /plasmid="pVSAL54" FT /strain="LFI1238" FT /mol_type="genomic DNA" FT /country="Norway:Hammerfest" FT /isolation_source="Atlantic cod" FT /db_xref="taxon:316275" FT CDS 346..1212 FT /transl_table=11 FT /gene="repZ" FT /locus_tag="VSAL_p54_01" FT /old_locus_tag="pVSAL54_01" FT /product="putative replication initiation protein" FT /note="Weakly similar to Plasmid ColIb-P9 Replication FT initiation protein RepZ UniProt:Q7DJZ7 (343 aa) fasta FT scores: E()=0.06, 24.111% id in 253 aa" FT /db_xref="UniProtKB/TrEMBL:B6ET74" FT /inference="similar to sequence:UniProt:Q7DJZ7" FT /protein_id="CAQ76618.1" FT /translation="MKTTLSPLNTWHPQESLSSEFEVIPLRDRKKKHIPTLNRKIFNTL FT EKHGAWINSQWPFLVHKLVEVGMRKRNLSFKEVHKRNIENTLRWIAYHSDTVTGCINVT FT HLCIEIGKEIGVSSSTISVIMKELVIMGLLYEPEQSGQSIQDIMHDGRLPRTLCTTPLF FT YEILGIKNDELDRLRSIEIKRREIEYAKRKEKYDADIVLKTYCHSNILRVWEYRHTQST FT SSYKIKLADMEPMTRLTYISRKLLERIKAKGWPISTEKEHITKMANNLLRRMGLSVKRS FT EFAPPIT" FT misc_feature 658..723 FT /gene="repZ" FT /locus_tag="VSAL_p54_01" FT /old_locus_tag="pVSAL54_01" FT /note="Predicted helix-turn-helix motif with score FT 1355.000, SD 3.80 at aa 105-126, sequence FT HLCIEIGKEIGVSSSTISVIMK" FT CDS complement(1648..2388) FT /transl_table=11 FT /locus_tag="VSAL_p54_02" FT /old_locus_tag="pVSAL54_02" FT /product="putative mobilization protein" FT /note="Similar to Escherichia coli MobC-like protein FT UniProt:Q6XGE7 (248 aa) fasta scores: E()=0.0018, 25.692% FT id in 253 aa" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:B6ET75" FT /inference="similar to sequence:UniProt:Q6XGE7" FT /protein_id="CAQ76619.1" FT /translation="MLITDPIYRAEQAIKNRNTVMIFLSHHRYSTLENIRYELGMKSKA FT SASRILKKLCQEGHVKKEELSDNITNVTLFGVTRKGLDTYHFNLDNNKSFLKSRVSLRT FT LNHTLTNQKVGSLLKKSARLTDVRVINAEIGNFKQYEHIMKFKHRPDLVLVGKTKTDIV FT VHVIETELTLKDSKRYNPILKEYLQLRRINKISTVWYFVKNEKAKERLRQMMDKLKYKL FT IKHRDEREVWDHLFRIETIALLGK" FT CDS 3432..5360 FT /transl_table=11 FT /locus_tag="VSAL_p54_03" FT /old_locus_tag="pVSAL54_03" FT /product="acyltransferase" FT /EC_number="2.3.1.-" FT /note="Weakly similar to Salmonella typhimurium O-antigen FT acetylase OafA UniProt:P74874 (609 aa) fasta scores: FT E()=6.3e-54, 33.591% id in 646 aa" FT /db_xref="GOA:B6ET76" FT /db_xref="InterPro:IPR002656" FT /db_xref="UniProtKB/TrEMBL:B6ET76" FT /inference="similar to sequence:UniProt:P74874" FT /protein_id="CAQ76620.1" FT /translation="MNFRYDINGLRAIAVIAVVLFHFNPAWVPGGFAGVDVFFVISGFL FT MTSIIFRGLDNDNFNLFKFYVARANRIIPALAVLCLVLMVFGWFYLNPLDYKALGKHVA FT SSMGFLSNIIYWRESGYFDAASHEKWLLHTWSLSVEWQFYIIYPIVLVALKKFLSLENL FT KRLIVIGTVLGFCLSVIATMKWPNPAYYLLPTRAWEMMMGGVAFLYPWNLSESKKKIIE FT VTGLALILGSYAFVSSDVSWPGYLALLPVLGAYLVIVANQQSSFITNNYLFQNLGKWSY FT SIYLWHWPVVVAGIFFEYKSFELAGVFLSVVLGFLSFKFIESANFPSFERWSDALKVKP FT LHFTLMLGFIGSLVFVFRPNQFLFPMKESVLNSIERKPYECFDKEMMHENDDVVCQLTK FT GESAILAIGDSHSYSSLPAIESIAKSNNLELYYTGFNGCPPIIGVSPIRGDQHLKNCKI FT LNQRALDFALGKQVKTVFLAARWTYYTEGTYSKTGVQYLTIDNNERGLDVSKRALMTGL FT KDTFKAYFDNGINVVVMLQVPMQKHDPDKIYYRSISNGKLLTSKLAKNSISLEEHVKFQ FT FETNHLIKSLAVSYPNVTIYDPTSDMCVEGQCLVGSVDVSYYFDDDHLSILGARKLVEP FT ISKFLVD" FT misc_feature 3441..4415 FT /locus_tag="VSAL_p54_03" FT /old_locus_tag="pVSAL54_03" FT /note="HMMPfam hit to PF01757, Acyltransferase family,score FT 2.9e-55" FT /inference="protein motif:HMMPfam:PF01757" FT misc_feature order(3450..3503,3516..3584,3645..3704,3822..3890, FT 3927..3980,4149..4208,4269..4328,4341..4409,4443..4502) FT /locus_tag="VSAL_p54_03" FT /old_locus_tag="pVSAL54_03" XX SQ Sequence 5360 BP; 1511 A; 983 C; 1059 G; 1807 T; 0 other; acataaattt cgtatcacga atcgaaaggt cgcctaaatt ggcggccttt ttcgtatatg 60 gacgttacac gatcacgcgc gttctgaact gatttaacga aaataaactg acagggatta 120 acttgatgta tgtgaaaata caatggcgta aaaacaaaaa agccctacgc acttgaagtg 180 cgtagagctt aatgctttaa tagtttccgt tcttagtgct acaacacttt gaacagaggg 240 cagttaagaa cctactaaat tctaactgca ttacacaaac aaaacagact tgcttgagta 300 gttgtgatta tagctatcta gcctgtaatt acaagagacg aatgaatgaa aacgacactt 360 tcccccctaa atacatggca tccgcaagaa tctttaagtt ctgaatttga agttattccg 420 cttcgtgatc gcaagaaaaa acacattcca accctaaacc gaaagatatt caacacgctt 480 gaaaagcatg gtgcgtggat caattcgcaa tggcctttct tggttcataa gttggttgag 540 gtcggtatgc gtaagcgtaa tctctcattt aaagaagtac ataagcgcaa tattgaaaat 600 actttacgtt ggattgccta ccattcagac acggtaaccg gttgtattaa tgtcactcat 660 ttgtgtattg aaattgggaa agagatcggg gtatcgagtt cgaccatttc agtgatcatg 720 aaagagttgg tgatcatggg gctgttgtac gaacctgagc agagtggaca atccatacaa 780 gatattatgc acgatggacg attgccaaga acgctatgca ccactccgct attctatgaa 840 atattaggca tcaaaaatga tgagcttgat cgtttacgct ccattgagat aaaacgacgt 900 gagatcgaat acgcaaaacg aaaagaaaaa tacgacgcag acatcgtcct aaaaacgtac 960 tgtcacagta atattctgcg tgtatgggaa tatcgacata ctcaatcaac ctctagttat 1020 aaaattaaat tggctgatat ggagccaatg actcgcctca cctatatttc acgtaagctg 1080 cttgagcgca tcaaagcaaa aggctggcct atcagcaccg aaaaagagca catcactaag 1140 atggccaaca atctactgcg tagaatgggg ttatctgtta aacgctctga gttcgccccc 1200 ccaataacat aactcttctt attttattac gctcttagct gagtgggtat tcctatgcgc 1260 gtcatttatg gcggtataaa aatcgtacaa aaacagtaaa acacactggt catttacttg 1320 gtattgatgg ggattgttag cctgttttta taagttatac attaatgtcg gaatagccca 1380 ttcttaattc agatatagcc cctttctaaa ccctgctaat attcttttct tatctaattc 1440 aaaattatcc tattccacct atcggtgttg ataaaaagga agcggcctct cgactgctac 1500 gcagtgaggc cttatgtcgg tgtggtaagt gctttttgtc attcgacagg aaagtaatat 1560 tgactttgtt tcttatgggg tcgctttatc gcttcgctat gattctggca tgaaaagaaa 1620 tcaaaattta cagtgtgtgc aaaatggtta tttccccaat aatgcaattg tttctattct 1680 aaataagtga tcccatacct ctcgttcatc tcgatgtttt ataagcttat attttaattt 1740 atccatcatt tgtcttaatc gttctttcgc tttttcattt ttaacaaaat accaaaccgt 1800 gctgatcttg tttattcttc ttaattgaag gtattccttt aaaatagggt tgtatcgttt 1860 actgtctttt aaggtcagct ctgtctcgat aacatgaacg acgatatctg tttttgtttt 1920 tcctactaac acaagatcag gccgatgctt aaacttcata atatgctcgt attgcttgaa 1980 gtttcctatt tcagcattaa tgactctcac atcagtgagt cgagcacttt tttttagtaa 2040 tgatccgact ttttgatttg ttagcgtgtg gtttaacgtt cgtaaactga ctctactttt 2100 taggaatgat ttattgttat cgagattgaa gtgatacgta tcgagtcctt ttcttgttac 2160 accaaagagt gtcacgttcg tgatgttgtc actgagttct tcttttttta catgcccttc 2220 ttggcatagc tttttaagga tacgactggc tgatgctttg gatttcatgc ccaattcata 2280 acggatattt tctaaggtcg agtatcgatg atgcgataaa aatatcatta cggtgtttct 2340 attttttatg gcttgctctg ctcgatatat tggatcggtt attagcattt tacgtcctat 2400 tcttttattt tctgtcggta acatagtacg gcaaattgcc attgccgaga agttaagcga 2460 tttaaagcag atcaaaatca tttagaaccc ttactgcgta aggctccacc agaaaaactt 2520 gtttttcttc ctgccgcgac tcgcaagtga gtctaccccc atcaataagc gacactggta 2580 cggtttttat ctgcctgttc catgcttcaa aatccaacgc actgtatgcc ttgatgaagg 2640 tagactcgtt tcacttgtcg cggcaaaagc attcactaaa aattagcaat tcccctcact 2700 ggttcggcac tttcagtgat tgaatttttt aaacgttcat gaggcactta acctggcgaa 2760 ctagcaatta aatccaacct agttggacgc tgtgcgattg agttcttggt taacgtaaaa 2820 ttgcgtaggc aatttaaagt gagttgcaga tctgcaattt ttgaatgtta ttgcttcctg 2880 atggtgactc aatgcttctt tgttgctatc caatggtgat cttatgcttc tcgatgcttc 2940 ccaatttcaa gataggcacg atggggacgt tttcaccctc tgctacgcat ttgataaaaa 3000 catcccgtgc caaaggtaaa ccctttgaaa cctgacgcac ttcgtttgtc tccagaacgc 3060 ccaaaaaagc cggctacgct tcggactttt tcgagcgcac cggttaattg tttaaaacgg 3120 acgttacagg gggattattg agtgaaccag ttcgagattt tattgccctg taaatcgctc 3180 tgaaagcgtc ataaactttc aaacgtgttt tggggtatat cggtgtggtt tatatctgaa 3240 aagcggcact gtgagcttct gagggggcga aagcatggtt ttcataggct aacttacgga 3300 tttaacataa agggcatatc gcgcatcaca acatttgtgg actaacaaat aaaattgaat 3360 gcagcataat ttattgcctt gccttgctct atctatacaa tacgcacaac ttttatttat 3420 gtgtgtaatg tatgaatttt cggtatgaca ttaatggttt aagagcaatt gcagtgatcg 3480 cagtggttct tttccatttt aaccctgctt gggttcccgg tggtttcgct ggcgtagatg 3540 tgttctttgt gatttcagga tttctgatga caagtattat ctttcgaggg ttagataatg 3600 ataattttaa cttgtttaag ttctacgtag ctcgagccaa tcgaataatt ccagctcttg 3660 ctgttttatg tttggttctt atggtctttg gttggttcta tcttaacccg ttggattaca 3720 aagccctcgg taagcatgtt gctagtagta tgggttttct ttctaatatt atttattgga 3780 gagaatctgg atactttgat gcagcctctc atgagaaatg gctgttacat acatggtcat 3840 tatctgttga atggcagttc tacattatct atccaattgt attagtagca cttaagaaat 3900 ttttatctct tgaaaactta aagcgattaa ttgttattgg gacagtttta ggtttttgtc 3960 taagtgttat cgcaacaatg aagtggccaa acccagcgta ctatcttctt ccaacaagag 4020 cttgggaaat gatgatgggg ggtgtggcgt ttctttatcc ttggaacttg tctgaaagta 4080 aaaagaaaat catagaggtt acaggcctag ctctaatcct aggttcgtat gcttttgttt 4140 ctagtgatgt gtcatggcca ggatatcttg ctttgcttcc agtccttggt gcttatcttg 4200 tgattgttgc aaatcagcag tctagtttta ttactaataa ctatctattc caaaacttag 4260 ggaaatggtc atattcaatt tacttgtggc actggcctgt tgttgttgca gggatctttt 4320 ttgagtataa aagttttgaa ttggcaggtg tttttctatc agttgtttta ggctttttaa 4380 gttttaaatt tattgagagt gctaatttcc catcttttga aaggtggtct gatgcactaa 4440 aagtaaaacc gttgcacttc actcttatgc taggttttat tggctctttg gtgtttgtgt 4500 ttaggcctaa ccaattttta tttccaatga aagagtcggt gcttaactct atagaaagaa 4560 aaccttatga atgtttcgat aaagaaatga tgcatgagaa tgatgatgtt gtttgccaat 4620 taactaaagg tgaatcagct attcttgcga ttggtgattc tcactcatac tcatcacttc 4680 ccgctattga atctattgct aagagcaaca acttagaact ttattacaca gggtttaatg 4740 gctgccctcc tatcatcgga gtatctccaa ttcgaggtga tcagcattta aagaactgta 4800 aaattttgaa tcaaagagca ttagactttg cgttgggtaa gcaagttaaa accgtatttt 4860 tagctgctcg atggacgtac tatacggaag ggacatactc aaaaacgggt gttcaatact 4920 taactattga taataatgaa cgtggcttag atgtatcaaa aagagcacta atgacagggc 4980 ttaaagatac atttaaggct tattttgata atggcataaa tgttgttgta atgcttcagg 5040 ttccaatgca gaagcatgat ccagataaga tttattatcg atcgatatct aatggaaagc 5100 tactaacttc aaagttagct aaaaactcaa tttctttaga agaacatgtt aaatttcaat 5160 ttgaaaccaa tcatttaatt aagtcactag ctgtttccta tccgaatgtg actatttacg 5220 atcctacttc agatatgtgt gtcgaaggac aatgtttggt aggtagtgta gatgtttctt 5280 attattttga tgatgaccac ttgtctattc ttggtgctag aaagttagtt gaaccaatta 5340 gtaagttttt agtcgattaa 5360 //