ID   FJ959086; SV 1; circular; genomic DNA; STD; VRL; 1815 BP.
XX
AC   FJ959086;
XX
DT   10-JUL-2009 (Rel. 101, Created)
DT   18-SEP-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Circovirus-like genome BBC-A, complete genome.
XX
KW   .
XX
OS   Circovirus-like genome BBC-A
OC   Viruses; ssDNA viruses; unclassified ssDNA viruses.
XX
RN   [1]
RP   1-1815
RX   DOI; 10.1099/vir.0.012955-0.
RX   PUBMED; 19570956.
RA   Rosario K., Duffy S., Breitbart M.;
RT   "Diverse circovirus-like genome architectures revealed by environmental
RT   metagenomics";
RL   J. Gen. Virol. 90(Pt 10):2418-2424(2009).
XX
RN   [2]
RP   1-1815
RA   Rosario K., Duffy S., Breitbart M.;
RT   ;
RL   Submitted (23-APR-2009) to the INSDC.
RL   College of Marine Science, University of South Florida, 140 7th Ave S, St.
RL   Petersburg, FL 33701, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1815
FT                   /organism="Circovirus-like genome BBC-A"
FT                   /strain="BBC-A"
FT                   /mol_type="genomic DNA"
FT                   /isolation_source="British Columbia coastal waters"
FT                   /note="assembled from metagenome data"
FT                   /db_xref="taxon:642260"
FT   stem_loop       join(1796..1815,1..12)
FT                   /note="contains nonanucleotide sequence (cagtattac)"
FT   CDS             complement(3..848)
FT                   /codon_start=1
FT                   /product="putative Rep protein"
FT                   /note="replication-associated protein similar to circovirus
FT                   Reps; viral replication protein-like protein (PF02407);
FT                   ORF1_Rep"
FT                   /db_xref="GOA:C6GIJ4"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:C6GIJ4"
FT                   /protein_id="ACQ78175.1"
FT                   /translation="MKITTEPTKRRDWAFTDFNMENQTKYASLVEQCVCSYVCFGIEYC
FT                   PKTNRPHLQGYLHFKNPRTTREGRNVFGKTHSEFCWHSREKNINYCKKGTKVLGETFFE
FT                   FGKKPNQGYRTDIENVEYILKTTRSIQGIIDNHFNLYIQYRSRFLNYLEDTEKPRAEMT
FT                   KGIWYYGPPGCGKSTVIKNNFFGTEVVWLEYDGKYFSDYNGHTTVIFDDQDISKFSRSM
FT                   ILKLINHTPFKLRCLGSYREFNAITVIFIDNFHYSHYFGEDEAIARRLKAIQFGTEVPK
FT                   "
FT   TATA_signal     878..883
FT   CDS             925..1662
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="similar to structural proteins; ORF2"
FT                   /db_xref="UniProtKB/TrEMBL:C6GIJ5"
FT                   /protein_id="ACQ78176.1"
FT                   /translation="MCFSNISHINTKCHHENTQKKNFTKKVQNVVRRMAETKIQDYSIN
FT                   EDVLISNFDTPYVQDLTQIERGGASNQRIGNEILMSGVKWRLLFHCRNNPNYEDVVIRS
FT                   LWCRIAIIEMKNTGTTDVVLLEDFFRKGANSMDFDAVTEAERYYLPVDLTNKKTLYQTT
FT                   FKIGVKNQVDTADYLSNKIIKNYRKVSRSINFESSDISNSASTKLYFVCWIGNNDLDAN
FT                   NATTNNAGACELSGLLSTYYKDF"
XX
SQ   Sequence 1815 BP; 664 A; 286 C; 292 G; 572 T; 1 other;
     acctatttag gcacttctgt gccaaattga atggctttta atcgcctcgc gatagcctca        60
     tcttcaccaa agtaatggct ataatgaaag ttatctataa agataacggt tatagcattg       120
     aactcacgat aagaaccaag acatctcaat ttaaaaggtg tatgatttat taatttcaaa       180
     atcatacttc ttgagaattt agagatgtct tgatcatcga atataactgt agtatgacca       240
     ttataatcag aaaagtattt tccatcatat tcaagccaaa ctacttctgt tccaaaaaaa       300
     ttatttttga taacagttga tttcccacac cctggcgggc cgtaatacca aatacctttt       360
     gtcatttcgg cacgaggttt ctcggtatct tccagataat tgagaaatcg gctacggtat       420
     tgtatataca aattaaaatg attatctatg ataccctgaa tagaacgtgt agtttttaaa       480
     atgtattcaa cattttcaat atcagtgcga tagccttgat taggtttctt accaaattca       540
     aaaaaggtct cacctaaaac ttttgtgcct tttttacaat aattaatatt cttttctcgc       600
     gaatgccaac agaattcgct atgtgtttta ccaaatacat tacggccttc acgtgtagtt       660
     ctcggattct taaaatgaag ataaccttgt agatgaggcc tatttgtctt aggacaatat       720
     tcaattccaa agcaaacata ggaacagaca cactgttcaa caagagaagc atactttgtt       780
     tgattctcca tattaaagtc agtaaaagcc caatctctac gtttagtagg ttcggttgta       840
     attttcatta tatattatat aatatataac gtttatatat aaaaaacgca ttgaactcaa       900
     atgcgtttaa aataatgtga taaaatgtgc tttagtaata tatcacatat taacacaaaa       960
     tgccatcacg aaaatacaca aaaaaaaaac tttaccaaaa aagtccaaaa tgttgtgcgc      1020
     cgaatggctg aaactaaaat ccaagattac agtattaacg aagatgtctt gatatccaat      1080
     tttgatacac catacgttca agatttaaca caaattgaac gtggtggtgc gtctaaccaa      1140
     aggataggta atgagattct tatgtcggga gttaaatgga gacttctatt tcactgtcga      1200
     aataacccta attatgaaga tgttgttata agaagtttat ggtgtaggat agcaataata      1260
     gaaatgaaga atacaggaac aacggatgtt gtattattag aagatttctt tagaaaagga      1320
     gcaaactcta tggattttga tgctgttact gaagcygaga gatactatct tccagtagat      1380
     ctaacaaata aaaaaacgtt gtatcaaaca acttttaaga ttggtgtgaa aaaccaagtc      1440
     gatactgctg attacctaag taataagatt ataaaaaatt atagaaaagt atctcgttca      1500
     attaattttg aaagtagtga tatatcaaat tcagcaagca caaaattata ttttgtgtgc      1560
     tggattggaa ataatgattt agatgcaaat aacgctacaa ctaacaacgc tggagcgtgt      1620
     gagttgtcag gattactttc aacttactac aaagatttct aaaagaaaaa caaatatttt      1680
     gataccttca tatgtacaat atgaaaaggt aaatgcgaac gcattaaaaa aaatataaga      1740
     gtggtgcact tgccaaccac acgttatttt tttatttagt atagcagaag gaatagccta      1800
     aatagtaaca gtatt                                                       1815
//