ID   FJ959085; SV 1; circular; genomic DNA; STD; VRL; 1833 BP.
XX
AC   FJ959085;
XX
DT   10-JUL-2009 (Rel. 101, Created)
DT   18-SEP-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Circovirus-like genome SAR-B, complete genome.
XX
KW   .
XX
OS   Circovirus-like genome SAR-B
OC   Viruses; ssDNA viruses; unclassified ssDNA viruses.
XX
RN   [1]
RP   1-1833
RX   DOI; 10.1099/vir.0.012955-0.
RX   PUBMED; 19570956.
RA   Rosario K., Duffy S., Breitbart M.;
RT   "Diverse circovirus-like genome architectures revealed by environmental
RT   metagenomics";
RL   J. Gen. Virol. 90(Pt 10):2418-2424(2009).
XX
RN   [2]
RP   1-1833
RA   Rosario K., Duffy S., Breitbart M.;
RT   ;
RL   Submitted (23-APR-2009) to the INSDC.
RL   College of Marine Science, University of South Florida, 140 7th Ave S, St.
RL   Petersburg, FL 33701, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1833
FT                   /organism="Circovirus-like genome SAR-B"
FT                   /strain="SAR-B"
FT                   /mol_type="genomic DNA"
FT                   /isolation_source="Sargasso Sea"
FT                   /note="assembled from metagenome data"
FT                   /db_xref="taxon:642259"
FT   stem_loop       join(1801..1833,1..26)
FT                   /note="contains nonanucleotide sequence (tagtattac)"
FT   polyA_signal    38..43
FT   CDS             63..1181
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="similar to structural proteins; ORF1"
FT                   /db_xref="UniProtKB/TrEMBL:C6GIJ2"
FT                   /protein_id="ACQ78173.1"
FT                   /translation="MVRMTTGRRKTFRSIKKVATRGKDVIDTVIEATEKGKEFVDNISQ
FT                   MPVKEVMTTAAKLAQSKKSPIGATGLNLLPKEARSVVSSTDAIGDFTSSASMFMYRPPR
FT                   KSNRAGFTKYQLKTGATRTNSSLSNQVGTSDMNILDAIQVENNPDTDAKYSNLSVKEAF
FT                   DNYLLAAGLKDTAGTSYDQKIQQTSIHVSSLQSELVITNNNNDTVMVDLYELVPQHTLG
FT                   PSQYVNENQATGYMSPVWTWTQGLSDTVMVDDALSRSYFQANPFNSSLFSRTWKIVKQV
FT                   RANISGGSTHRHKSAYMINKTVSYPEMAQFTTRGGKFAGWNPTFMIVQQGVPTSAAQEG
FT                   VASSITVRMNAQLNYEASAVEQARVIVFDSKT"
FT   CDS             1193..1795
FT                   /codon_start=1
FT                   /product="putative Rep protein"
FT                   /note="replication-associated protein similar to circovirus
FT                   Reps; viral replication protein-like protein (PF02407);
FT                   ORF2_Rep"
FT                   /db_xref="GOA:C6GIJ3"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:C6GIJ3"
FT                   /protein_id="ACQ78174.1"
FT                   /translation="MASQHGWVFTLNNPSIEEYPLKFEETSSGRRYPIAKWELPRATLA
FT                   FLGCGRERGQSNTPHLQGLLISSRPVSLKSLKKLNPRAHWEPMRGSFKQAREYCEKEGK
FT                   FVQWTKSGESVASLSRYVQTDLEIFQMIQQSDTDLNKLSVTMLKQEKKLAELSKRIEDL
FT                   TKLQSHFLLKQDNFQNSILKLLSQKKILNTLSDEDLI"
XX
SQ   Sequence 1833 BP; 603 A; 384 C; 406 G; 440 T; 0 other;
     acccaaagac tcgtacaccc cccgccgccc cgcccccaat aaataactca aagaggtata        60
     atatggtcag aatgacaaca ggacgaagaa aaactttccg ttccataaaa aaggttgcga       120
     caagaggtaa agatgtcata gacaccgtta tcgaagcaac cgaaaaaggc aaagaatttg       180
     tcgataatat ttctcaaatg cccgttaagg aagtaatgac gacagctgcc aagctagcac       240
     aatcgaagaa atctccgatt ggagccaccg ggttaaatct tttaccaaaa gaggcaagaa       300
     gcgtagtctc gagcaccgac gcgatcggag attttacctc atcggcgagc atgttcatgt       360
     atcgtccacc acgaaaaagt aatcgtgctg gatttactaa gtaccaattg aaaactggtg       420
     cgactcgaac gaattcctca ctgagcaatc aggtaggaac gtcagatatg aatatcttag       480
     acgctatcca ggttgagaac aatcctgaca cggatgcaaa atactcaaac ctttcagtaa       540
     aggaagcctt cgataattat ctattagcgg ctggcctgaa ggatactgct ggtacgtctt       600
     acgaccagaa gatccagcag acgtcaatcc atgtatcatc attgcagtcg gagttagtaa       660
     taacgaacaa caataacgac accgtaatgg tggatttgta tgagttggta ccccaacata       720
     cactaggtcc gagtcaatat gttaacgaga accaagcgac aggttatatg tcgccggtct       780
     ggacctggac acaagggttg tctgacacag tcatggtcga cgacgcactt agtcgttcgt       840
     acttccaagc aaacccgttc aattcctcgt tattttcgag aacgtggaaa attgtaaaac       900
     aggttcgtgc caacataagt ggtggatcaa cgcaccgtca caaatcggct tatatgatta       960
     ataagacggt gagctatcct gagatggctc aatttacaac tcgaggtggt aaatttgctg      1020
     gatggaaccc tacattcatg atagtacaac aaggtgtacc tacttcggca gcacaagaag      1080
     gagtagcgtc aagcataaca gttcgaatga atgctcagct gaattatgag gcttcagcag      1140
     ttgaacaagc acgtgtgatt gtctttgact cgaaaaccta agtggcgtct ggatggcgag      1200
     tcagcatggt tgggttttca ccctaaacaa tccaagtatc gaagagtacc cattgaagtt      1260
     tgaagaaaca tctagcggta gacgataccc tatcgccaag tgggagttgc ctcgtgcaac      1320
     tctcgctttc ttaggttgtg gtagagaacg aggtcagtcg aatacaccac acctacaagg      1380
     acttttaata agttcacgac cagtttcatt aaagagtttg aagaagttaa accctagggc      1440
     ccactgggaa ccaatgcgag gttcgttcaa gcaagctcgt gaatactgcg aaaaagaagg      1500
     caagtttgtc caatggacaa aatccggtga gtcagtagca agtctgtcac gttatgttca      1560
     gactgatttg gaaatatttc aaatgatcca acaatcagat actgatttaa acaagttatc      1620
     ggtaacgatg cttaagcaag aaaaaaaact tgcagaatta tctaaaagaa tagaagattt      1680
     aacaaagctt cagtctcact ttctcctaaa acaagacaat ttccagaatt ccattcttaa      1740
     attattatcg caaaagaaaa ttttgaacac attatcagac gaagatctga tataatagta      1800
     ggtggggggt gggagagacg aagggctagt att                                   1833
//