ID   FJ959084; SV 2; circular; genomic DNA; STD; VRL; 1739 BP.
XX
AC   FJ959084;
XX
DT   10-JUL-2009 (Rel. 101, Created)
DT   18-SEP-2009 (Rel. 102, Last updated, Version 3)
XX
DE   Circovirus-like genome SAR-A, complete genome.
XX
KW   .
XX
OS   Circovirus-like genome SAR-A
OC   Viruses; ssDNA viruses; unclassified ssDNA viruses.
XX
RN   [1]
RP   1-1739
RX   DOI; 10.1099/vir.0.012955-0.
RX   PUBMED; 19570956.
RA   Rosario K., Duffy S., Breitbart M.;
RT   "Diverse circovirus-like genome architectures revealed by environmental
RT   metagenomics";
RL   J. Gen. Virol. 90(Pt 10):2418-2424(2009).
XX
RN   [2]
RP   1-1739
RA   Rosario K., Duffy S., Breitbart M.;
RT   ;
RL   Submitted (23-APR-2009) to the INSDC.
RL   College of Marine Science, University of South Florida, 140 7th Ave S, St.
RL   Petersburg, FL 33701, USA
XX
RN   [3]
RC   Sequence update by submitter
RP   1-1739
RA   Rosario K., Duffy S., Breitbart M.;
RT   ;
RL   Submitted (03-AUG-2009) to the INSDC.
RL   College of Marine Science, University of South Florida, 140 7th Ave S, St.
RL   Petersburg, FL 33701, USA
XX
CC   On Aug 3, 2009 this sequence version replaced gi:229562111.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1739
FT                   /organism="Circovirus-like genome SAR-A"
FT                   /strain="SAR-A"
FT                   /mol_type="genomic DNA"
FT                   /isolation_source="Sargasso Sea"
FT                   /note="assembled from metagenome data"
FT                   /db_xref="taxon:642258"
FT   stem_loop       join(1720..1739,1..11)
FT                   /note="contains nonanucleotide sequence (tagtattac)"
FT   TATA_signal     54..59
FT   CDS             126..956
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="similar to structural proteins; ORF1"
FT                   /db_xref="UniProtKB/TrEMBL:C6GIJ0"
FT                   /protein_id="ACQ78171.2"
FT                   /translation="MPGYNFRSNPVKKPSYRFRSKSKPRSQPNKSVKKEVKKNTKDIKL
FT                   LKSVGFQYAPFQQREVGTISNFLHTSLLTAPNNWGGIFRMHGVSNEDLPRQYMMKSVDV
FT                   NWIAQAEASEVGNLWLQVFVVSLKHKMANQVLTRTTRLTNLEEGLDYTSQSAGTAFALQ
FT                   GDLGYKLNPDLYTIHYHSGQRRIGESTVGESPVAVTNINNGTTMGSCRIKWPHTFKNDE
FT                   TSDAGFKELTYQNIEPKQHLYLLVMSNTSGSVITGGELFFSSRAQFNGHVNNPN"
FT   CDS             complement(1143..1682)
FT                   /codon_start=1
FT                   /product="putative Rep protein"
FT                   /note="replication-associated protein similar to circovirus
FT                   Reps; viral replication protein-like protein (PF02407)"
FT                   /db_xref="GOA:C6GIJ1"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:C6GIJ1"
FT                   /protein_id="ACQ78172.2"
FT                   /translation="MPRVNPAKAWCFTLNNYTENEHGALVQRFSDFDDKYYFIVGCEIG
FT                   AQGTPHLQGYIEKKVGRFRPLPCFEVLRDGKNAMHFERAKGNRKQNYNYCSKDGDFITN
FT                   IDKPIMTYSEAKDIWKETNGISNDKYDAATINEAAMHIEYMDLYDCYTDEGQKKFMVRY
FT                   KAMMQARYPEKETVEI"
XX
SQ   Sequence 1739 BP; 498 A; 369 C; 354 G; 518 T; 0 other;
     acccaatccc cttatgtcgt tttgcaccac ctgcaccact gcaccattct agatataaag        60
     acaacgtgtc atatagaatg cacccactct ttcgccattt ttcttttcat ctattttaag       120
     aacaaatgcc tggctataac tttcgttcta accctgttaa aaaaccaagt tatcgatttc       180
     gtagtaagtc taagccgcgc tctcagccta ataagagcgt aaagaaagaa gtgaagaaaa       240
     acaccaaaga tatcaagttg ttaaaatctg tcgggtttca gtatgcacca tttcagcaac       300
     gtgaggtagg taccatttca aatttcctac acactagtct tcttaccgca ccaaacaact       360
     ggggcggcat cttccgtatg catggcgtta gcaatgaaga cttgcctagg cagtatatga       420
     tgaaatccgt agatgtaaat tggatagcac aggctgaggc ttctgaagtc ggtaatcttt       480
     ggttacaagt gtttgttgtg tctcttaaac ataagatggc aaaccaagtt ttgacaagaa       540
     ctacacgatt aacaaacctt gaagaaggac ttgactacac tagtcaaagt gctggcaccg       600
     ctttcgctct acagggtgac cttggttaca agcttaaccc tgatttgtat actatacatt       660
     atcattctgg acagcgccgt attggcgagt ccactgtagg cgagagtccc gttgctgtga       720
     caaatatcaa caatggtaca actatgggtt cttgtagaat taaatggcca catacattca       780
     aaaatgatga gacttctgat gctgggttca aggagctaac atatcaaaat attgaaccaa       840
     agcagcattt gtacctcttg gtgatgtcta atacttcagg tagtgttatc acgggtggag       900
     agttgttctt ctcatcccga gcacagttca acggtcatgt taataatccc aactagacgg       960
     agtattgagt tagggaaaaa aaaccaacag ttttttttac cacttggatt ccaaaggtac      1020
     cctttggcct ccggaggaac taacagaatt tgtcgccaga caaacataga tgtgaaaatc      1080
     ggtgaattct ttataccccg tatggggtac aaagaagagg gctttgccct caggctttag      1140
     cgtcatatct cgacagtttc tttttcggga tagcgagcct gcatcattgc tttgtagcgc      1200
     accatgaact ttttctgacc ttcgtcagtg taacaatcat ataagtccat gtactcgatg      1260
     tgcatggcgg cctcgttaat ggtcgctgca tcatacttat cgttcgagat accattggtt      1320
     tctttccaaa tgtccttggc ttcgctatag gtcatgatag gtttgtcgat gttagtgata      1380
     aaatctccat ctttcgaaca atagttataa ttttgtttac ggtttccttt tgcgcgctca      1440
     aagtgcattg cattcttgcc gtcgcgtaaa acttcaaagc atggcagcgg cctgaaacga      1500
     ccaacttttt tttcaatata tccttgtaaa tgcggtgtac cctgtgcacc aatttcacaa      1560
     ccgacgataa aataatattt gtcgtcaaaa tccgaaaacc gctgcaccag tgcaccatgt      1620
     tcattttcgg tataattatt gagtgtaaaa caccaagctt tggccggatt tactctgggc      1680
     atgattgtag gtagaaaaaa gttagtacgc gtgaaaattg gggattggta aatagtatt       1739
//