ID FJ959083; SV 1; circular; genomic DNA; STD; VRL; 2757 BP. XX AC FJ959083; XX DT 10-JUL-2009 (Rel. 101, Created) DT 18-SEP-2009 (Rel. 102, Last updated, Version 2) XX DE Circovirus-like genome CB-B, complete genome. XX KW . XX OS Circovirus-like genome CB-B OC Viruses; ssDNA viruses; unclassified ssDNA viruses. XX RN [1] RP 1-2757 RX DOI; 10.1099/vir.0.012955-0. RX PUBMED; 19570956. RA Rosario K., Duffy S., Breitbart M.; RT "Diverse circovirus-like genome architectures revealed by environmental RT metagenomics"; RL J. Gen. Virol. 90(Pt 10):2418-2424(2009). XX RN [2] RP 1-2757 RA Rosario K., Duffy S., Breitbart M.; RT ; RL Submitted (23-APR-2009) to the INSDC. RL College of Marine Science, University of South Florida, 140 7th Ave S, St. RL Petersburg, FL 33701, USA XX FH Key Location/Qualifiers FH FT source 1..2757 FT /organism="Circovirus-like genome CB-B" FT /strain="CB-B" FT /mol_type="genomic DNA" FT /country="USA" FT /isolation_source="Chesapeake Bay" FT /note="assembled from metagenome data" FT /db_xref="taxon:642257" FT misc_feature join(2750..2757,1..2) FT /note="contains nonanucleotide sequence (tagtattac)" FT CDS 39..1502 FT /codon_start=1 FT /product="hypothetical protein" FT /note="similar to structural proteins; ORF1" FT /db_xref="UniProtKB/TrEMBL:C6GII7" FT /protein_id="ACQ78168.1" FT /translation="MCIFPVSLLSKKNINCTMVVWPAVLPYLEAANTVAQGVQTANTIV FT HEGQQLAKRTFGTQISNKNKKRKLDVGHASTQTSGGGKYYQAGYVGRFRGKRAKIVRRR FT RIPSKKRVAKKRRTYKRKSRVVKGENYYGRVGSIATLEVTGALSDSDCVYIGHSSFAVG FT QVMRMLSVAIMRKLFKMAISWEPENISTNIPYKLVGGAQVSNGYTLIVKKINTDDNVKT FT QDEYIGPANSHNITAPADWFRTNHMEAISAQASSNTAVERNNRLLWLHLVDVGTGIVRA FT QLDLTTLMCDVYSKSNLKIQNVTVPSATATEADNVNNVPLIGRSYHISNWQPMTADDDM FT GPLNRLNQDTGVLGVEIKQSATLGSQYVTWKEPPPSKAFINCVSSSPERMEPGTIKNHV FT SILRRSMAFPRLMEALAIRRGNVLNKSVKIGNHDLFAFERMISVPGELPLKIIYECNIF FT TGCAVYSRKKAIMMQAVNSTAQGASTIPG" FT gene complement(<1489..>1947) FT /pseudo FT /gene="ORF4_Rep3" FT CDS complement(1489..1947) FT /pseudo FT /codon_start=1 FT /gene="ORF4_Rep3" FT /note="Rep-associated protein; RNA helicase protein-like FT protein (PF00910); similar to circovirus replication FT proteins" FT CDS complement(1935..2345) FT /codon_start=1 FT /product="Rep-associated protein" FT /note="replication-associated protein; viral replication FT protein-like protein (PF02407); ORF3_Rep2" FT /db_xref="UniProtKB/TrEMBL:C6GII8" FT /protein_id="ACQ78170.1" FT /translation="MLATPPNSPTVRHRHQGPAGDSPDNGVQALASGRQAQEQAAAFWV FT ESSFPAGDPRRAYEEQRSVGLCGEGGDFRRWDELPAGEGAKQGSGLGPSEGPSSEGPVL FT GDSLWHAAQVRRLWEMTDVMWGDLGMDTDPAH" FT CDS complement(1985..2485) FT /codon_start=1 FT /product="putative Rep-associated protein" FT /note="replication-associated protein; viral replication FT protein-like protein (PF02407); ORF2_Rep1" FT /db_xref="GOA:C6GII9" FT /db_xref="InterPro:IPR003365" FT /db_xref="UniProtKB/TrEMBL:C6GII9" FT /protein_id="ACQ78169.1" FT /translation="MHAQNVLTLNTYKAFHSCSTPPTFFPNPNLMPPSKPSWYWILTIP FT EQCWQPPQTLPPYATAIKGQLEIAPTTGYRHWQVAVKLKNKQRLSGLKALFPPETHAEP FT TKSSAAWDYVGKEETSVAGTSFQLGKVPSKAVDWDQVKDLAVKGQFSEIPSGTLLRCVV FT CGR" XX SQ Sequence 2757 BP; 627 A; 650 C; 719 G; 759 T; 2 other; acctacagcc catgtggaac gtggaacacg ttacataaat gtgtattttt cccgtatccc 60 tcctttccaa aaaaaacata aactgcacaa tggttgtctg gcctgctgtt ttgccctatc 120 tggaggctgc taacaccgtt gcgcaaggtg tgcagactgc taatactata gttcacgaag 180 ggcagcagct tgctaaacgt acctttggta cgcaaattag taataagaac aagaagcgca 240 agcttgatgt cggacacgct tcaacccaaa ccagcggtgg tggcaagtat tatcaagctg 300 gatatgttgg cagattcaga ggcaagcgtg cgaaaattgt ccgacgtcga cgaatccctt 360 ccaaaaagcg agtcgcaaag aagcgccgca cctataagcg gaagtcccgt gttgtcaagg 420 gagagaatta ttacggacgc gttggatcaa ttgctacttt ggaagtcact ggagctttgt 480 ctgatagcga ctgcgtgtat attggtcatt cttcttttgc tgttggccaa gtgatgcgta 540 tgttgtctgt tgccatcatg cgcaagctat ttaaaatggc catttcttgg gagcccgaaa 600 acatcagcac caatattccc tataagctgg ttggcggagc ccaggtttcg aacggatata 660 cgcttattgt caagaagatt aatactgatg acaatgtgaa gacgcaggat gagtatattg 720 gtccagctaa cagtcacaat attactgccc ctgctgattg gttccgtacc aatcatatgg 780 aagctatttc agctcaagca tcttctaata ctgcagtcga acggaacaac cgtcttcttt 840 ggcttcattt agtggatgtt gggactggca ttgttcgtgc tcagttggat ttgactactc 900 ttatgtgtga tgtctattct aagagtaatc ttaagattca gaacgttact gttcctagtg 960 caaccgccac ggaggccgac aatgtgaaca atgttccttt gattggtcgt tcatatcata 1020 tttctaattg gcagcctatg ackgcsgatg atgatatggg tcctcttaat cgtttgaacc 1080 aagatactgg tgttcttggt gtcgagatta agcagtctgc aactcttgga tctcaatatg 1140 tcacgtggaa agagcctcct ccttctaagg cttttatcaa ttgtgtttcc agttcacctg 1200 agcgaatgga gcctggtacc attaagaacc atgttagtat tttacgtcgt agcatggcat 1260 ttcctcgtct gatggaagcc cttgccattc gtcgtggaaa tgttctgaac aagagtgtta 1320 agattgggaa ccatgacttg tttgcctttg agcgtatgat ttctgtgcct ggtgaattgc 1380 ctctcaagat tatctatgag tgtaatattt ttactggttg tgctgtgtac agtcgcaaga 1440 aggctattat gatgcaagcg gtcaattcta ctgcccaggg tgctagtact attcctgggt 1500 aatatatttt tgtgtcattt cttctactat aactctacgc ataagcgcct ctttttgcgc 1560 caagctagct tctgggaacc aaagctctgg tgctttgttg cttgtaatcc agaagtgggt 1620 agcttttagc ggtagtgtcc ctcctttcac ctccacggag caggggtact tgtccaacca 1680 gcgtagtaga tgggtgatgt tgatgaggga gtcgaactcg tcgataataa cattgatttc 1740 tcccatgtag ccatcccacc atttgttgct actgctcttg atgtaggcgt ggccgcttgc 1800 ttcttgccac gccctgtgcg tcttgcccgt gccagttggc ccgtagtaga tcttggcaag 1860 tgcagtctct cgcggtagtg gccgggcaaa gagagaatgg acgcgaataa tgttgtttgt 1920 atacctgcgt gtatttagtg ggcagggtca gtgtccattc ccaagtcccc ccacataacg 1980 tcggtcatct cccacagacg acgcacctga gcagcgtgcc agagggaatc tccgagaact 2040 ggcccttcac tgctaggtcc ttcacttggt cccagtccac tgccttgctt ggcaccttcc 2100 ccagctggaa gctcgtccca gcgacggaag tctcctcctt ccccacataa tcccacgctg 2160 cgctgctctt cgtaggctcg gcgtgggtct ccggcgggaa aagagctttc aacccagaaa 2220 gccgctgctt gttcttgagc ttgacggcca cttgccagtg cctgtacccc gttgtcgggg 2280 ctatctccag ctggcccttg atggcggtgg cgtacggtgg gagagtttgg gggggttgcc 2340 agcattgctc aggtatggtg aggatccaat accaagaggg tttgctaggt ggcatgaggt 2400 tagggttagg gaaaaaagtg ggaggagtgg aacaggagtg gaacgcctta tatgtgttta 2460 gggttagtac attttgcgca tgcattcgaa tgtggttcga gtgtgccgct gcggcagggt 2520 aacaccgcta cgattcagca cagaacacaa ccccaaccgg gccggggggc ccccccgtga 2580 gggggggtcc ggccggaatg tgcgaacccc cttacaatta gcgccttgtc acaccatctc 2640 ccccctgccc gaagggggga gatgggggga ctaggcgcgt aacgcgcggt agcgaaaaat 2700 ccacttgggc tgtaggacga aatgggtcac gtgactacgt tcccatttcc tagtatt 2757 //