ID   FJ959082; SV 1; circular; genomic DNA; STD; VRL; 2160 BP.
XX
AC   FJ959082;
XX
DT   10-JUL-2009 (Rel. 101, Created)
DT   18-SEP-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Circovirus-like genome CB-A, complete genome.
XX
KW   .
XX
OS   Circovirus-like genome CB-A
OC   Viruses; ssDNA viruses; unclassified ssDNA viruses.
XX
RN   [1]
RP   1-2160
RX   DOI; 10.1099/vir.0.012955-0.
RX   PUBMED; 19570956.
RA   Rosario K., Duffy S., Breitbart M.;
RT   "Diverse circovirus-like genome architectures revealed by environmental
RT   metagenomics";
RL   J. Gen. Virol. 90(Pt 10):2418-2424(2009).
XX
RN   [2]
RP   1-2160
RA   Rosario K., Duffy S., Breitbart M.;
RT   ;
RL   Submitted (23-APR-2009) to the INSDC.
RL   College of Marine Science, University of South Florida, 140 7th Ave S, St.
RL   Petersburg, FL 33701, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2160
FT                   /organism="Circovirus-like genome CB-A"
FT                   /strain="CB-A"
FT                   /mol_type="genomic DNA"
FT                   /country="USA"
FT                   /isolation_source="Chesapeake Bay"
FT                   /note="assembled from metagenome data"
FT                   /db_xref="taxon:642256"
FT   stem_loop       join(2140..2160,1..12)
FT                   /note="contains nonanucleotide sequence (tagtattac)"
FT   CDS             31..1062
FT                   /codon_start=1
FT                   /product="putative Rep protein"
FT                   /note="replication-associated protein similar to circovirus
FT                   Reps; viral replication protein-like protein (PF02407);
FT                   ORF1_Rep"
FT                   /db_xref="GOA:C6GII5"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:C6GII5"
FT                   /protein_id="ACQ78166.1"
FT                   /translation="MSRSRNWCFTYNNYDSSPRIQKCMKYLTYGYEVGESGTPHLQGFV
FT                   IFKNAVAKPSQYFKPAYHFEKARGTPQQALEYCQKDGNFKEFGEKPKTVADGGAAGGEA
FT                   NKRRYEEAFSAAKEGRMDDIPADIYIRHYSTLKKIRFDHAPPAQNNDVLNNYWVYGPSG
FT                   TGKSKSVREFFGKSLYVKNQNKWFDGYEGEDFVLIDDVHPNWSGKTILKIWSDHYPFSP
FT                   ETKGGHIKMIRPEGIIVTSNYTIEEMYEAEEDRQPIRRRFKVIKSEAGYDVIMKEYNKR
FT                   VAATKICSNTDEDVVVAEHEPCRPATRASAPGDHELPPPATEVQSIVVAVIESPPPPAT
FT                   TDQ"
FT   TATA_signal     1094..1099
FT   CDS             1147..1977
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="similar to structural proteins; ORF2"
FT                   /db_xref="UniProtKB/TrEMBL:C6GII6"
FT                   /protein_id="ACQ78167.1"
FT                   /translation="MYRYYKKKNAVRRRATLKRSFKRGFRRAYTPKKSYRPYRKFKSVN
FT                   PKIKVPNIKVPIAFSSTVALSTSADKIFTPEPTLKDNEVHDTYTRVYNKHKVVSIVNYV
FT                   QPHQYSSYYYNLVGNGEPLKYVVYKITPDTLGDESKPTNFREAMAMPGARAYSLTRSSK
FT                   RMRIAQMGVVNTYLKGSEFVDANLTNVRQSRRATYIPTNTLESDLPWYFGFRIWFPQLT
FT                   GGTLNLPPPSFEVISVLNVSYIMPTNASLTTIKKEDDTLPDNMFNLNCNSDCIF"
FT   polyA_signal    2018..2023
XX
SQ   Sequence 2160 BP; 689 A; 505 C; 436 G; 530 T; 0 other;
     acccccgaag cctttgtgtc aagtgccaaa atgtccagat caagaaattg gtgttttact        60
     tataataatt acgattcgag cccacgtata caaaagtgta tgaagtattt aacgtacggc       120
     tacgaagtag gtgaaagcgg aacgccccat ttacaggggt ttgttatatt caagaatgct       180
     gtggcgaagc catcccagta ttttaaaccc gcttatcatt tcgaaaaagc ccgtggtacc       240
     ccccaacaag ccctggagta ttgccagaaa gacggaaact ttaaagagtt tggagaaaag       300
     cccaagactg tagcagatgg tggtgccgca ggtggcgaag ccaacaagag aagatacgaa       360
     gaagccttta gcgcagctaa agaaggtcgg atggatgata tccccgctga tatttacatc       420
     cgtcattata gtactctgaa gaaaatacgc tttgatcatg ccccccctgc tcagaacaac       480
     gatgtcctta ataattactg ggtatatgga ccctctggta ctggaaagag taaatcagtc       540
     cgagagttct ttggaaagag tctgtatgtg aaaaatcaga acaagtggtt tgacggctat       600
     gaaggtgaag atttcgtgct aatcgatgat gtacatccca attggtctgg caaaacaatt       660
     ctaaaaatat ggtcagatca ctatcccttc tcccccgaaa cgaaaggtgg tcatatcaaa       720
     atgattagac ctgaaggaat aatagtaaca tcaaactaca ccatcgaaga aatgtatgaa       780
     gcagaagaag atagacaacc catcagaaga agattcaaag tcataaaaag tgaagctggc       840
     tatgacgtca tcatgaaaga gtataataag agagtggcag caacaaaaat ttgttctaat       900
     acggatgaag atgttgttgt tgcggaacac gaaccatgtc gccccgcgac ccgagcgtcc       960
     gcccccggcg accacgaact cccgcccccg gcgaccgagg tccagtcaat cgttgtggct      1020
     gtaatagaat ccccaccgcc cccggcgacc acggaccagt aaacgtcaac acggacccag      1080
     acaccgcaac tagtataaat acagtagaga taagaaaaaa cgaacagtgc taactgtgaa      1140
     gtcaacatgt acagatatta caagaagaaa aatgcagtca ggagaagagc tactctcaag      1200
     cgaagcttta agcgaggctt cagaagagcc tacactccaa aaaaatccta ccgcccctac      1260
     cgcaaattca agtcagtcaa ccccaagatt aaagttccca acattaaggt ccctattgcc      1320
     ttttcctcta cagttgccct atccacttca gcagacaaga tattcacccc tgaacccaca      1380
     ctcaaggaca acgaagtaca cgacacctac acaagagtct acaacaaaca taaagtagtt      1440
     tccattgtaa attatgtcca gccccaccag tactcttcct actattataa ccttgtcgga      1500
     aacggagaac cccttaagta cgtcgtctac aaaataaccc ctgataccct tggtgatgag      1560
     tcgaagccta ccaattttag agaagctatg gctatgcccg gtgcccgtgc ttacagcctt      1620
     acccgttcat ccaagagaat gcgtattgct caaatgggag tagtcaatac ttacctgaaa      1680
     ggatccgaat ttgtcgatgc caaccttact aacgtgagac agtcccgtcg tgccacctat      1740
     atccctacaa acaccctgga gagtgacctt ccctggtact ttggattccg tatttggttc      1800
     cctcaattaa ccggtggaac acttaacctc cccccaccca gctttgaagt tatcagtgtc      1860
     ctgaatgtct cctacatcat gcctactaat gcctccctta ccactatcaa gaaagaagat      1920
     gataccctcc ctgataatat gtttaattta aattgtaatt ctgattgtat attttaaatg      1980
     tcgtcttaat ttgtaatgtc gtctttgttt gtttttaaat aaaagataag aaatttaaac      2040
     ttgaagttcg ttaaagttag ttaagttcgt gcgtactttg taggagataa gaattaatca      2100
     tagcgtccgt acatatatga gagataagaa ttccggcaca aggcttcggg gtctagtatt      2160
//