ID FJ959081; SV 1; circular; genomic DNA; STD; VRL; 2782 BP. XX AC FJ959081; XX DT 10-JUL-2009 (Rel. 101, Created) DT 18-SEP-2009 (Rel. 102, Last updated, Version 2) XX DE Circovirus-like genome RW-E, complete genome. XX KW . XX OS Circovirus-like genome RW-E OC Viruses; ssDNA viruses; unclassified ssDNA viruses. XX RN [1] RP 1-2782 RX DOI; 10.1099/vir.0.012955-0. RX PUBMED; 19570956. RA Rosario K., Duffy S., Breitbart M.; RT "Diverse circovirus-like genome architectures revealed by environmental RT metagenomics"; RL J. Gen. Virol. 90(Pt 10):2418-2424(2009). XX RN [2] RP 1-2782 RA Rosario K., Duffy S., Breitbart M.; RT ; RL Submitted (23-APR-2009) to the INSDC. RL College of Marine Science, University of South Florida, 140 7th Ave S, St. RL Petersburg, FL 33701, USA XX FH Key Location/Qualifiers FH FT source 1..2782 FT /organism="Circovirus-like genome RW-E" FT /strain="RW-E" FT /mol_type="genomic DNA" FT /country="USA:Southwest Florida" FT /isolation_source="reclaimed water" FT /note="assembled from metagenome data" FT /db_xref="taxon:642255" FT stem_loop 63..103 FT /note="contains nonanucleotide sequence (aagtattac)" FT TATA_signal 117..122 FT CDS 137..934 FT /codon_start=1 FT /product="putative Rep protein" FT /note="replication-associated protein similar to circovirus FT Reps; viral replication protein-like protein (PF02407); FT ORF1_Rep" FT /db_xref="GOA:C6GII3" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR003365" FT /db_xref="UniProtKB/TrEMBL:C6GII3" FT /protein_id="ACQ78164.1" FT /translation="MIRRQGVYWLLTIPEDEFEPHLPQDCAYIKGQKERGEHTGYLHWQ FT VLVVLRRKGSLSTITGMFGVSCHAELSRSAAASEYVWKEDTRVGDQFEFGTLPFKRNDP FT KDWEQIWERAKAGDINGIPADVRIQCYRTLRTIRADFAVPEAMVRQCFVYCGPTGTGKS FT RRAWAEAGMDAYPKDPRTKFWDGYRDQKHVVVDEFRGAIDISHILRWLDRYPTLVEIKG FT SATCLVAEKLWITSNVHPNEWYPMLDSATVDALLRRLQITVFE" FT polyA_signal 930..935 FT TATA_signal 1022..1027 FT CDS 1069..2253 FT /codon_start=1 FT /product="hypothetical protein" FT /note="similar to structural proteins; ORF2" FT /db_xref="UniProtKB/TrEMBL:C6GII4" FT /protein_id="ACQ78165.1" FT /translation="MPPIKRKSPSTPKSDKRSRGSITPGSARRVLFQARVPRQRSGTNV FT VTGADKRIGKKVKKEGRVKRLKVSKAFRKKVKQSLETHRGTGWFRETVTIEKLNCIDSQ FT QNVLTPGRQVNGTFGNFFSPTYIRYVASHLYNKLAPTQAITVNDTNLYPVANLKIDVIE FT QNYVMKLRNNSPRTYDVTLVDYSPKSNNSIATSFEDTWTSALVNGGPFGAAGTLGQESR FT ENVGNATKNTMGNHPKFMAVMRHYYSMDTVHVKLEPGKEYYHKVKGPNMMTYDFNKYFK FT DSNFHDIQKFCKGTLVMCSLDLTSTTLATHGRYTDIPTADPQGMIIETTHFTKIKCPER FT AGFQIPNVAVPIGSIQPLSQQSQNAWSIVYPGTAQAGVVEYRQDENPLSNVIEV" XX SQ Sequence 2782 BP; 873 A; 520 C; 605 G; 784 T; 0 other; acccccctag gtcaaaaaat aatcggctag tacgataagc gtcagtaagc acggattcca 60 cgtgggtgag aatccaagta ttacttactg acgccggttc tcattctcat aaaaggtata 120 aaaaccttcc aaattcatga ttcgtcgaca aggagtttac tggttgttga caatcccaga 180 agatgaattt gaaccacacc tcccacaaga ctgtgcttat atcaaaggac aaaaagaacg 240 aggtgaacac acaggttact tgcactggca ggttttggtg gtgctgcgac gaaaaggatc 300 attgtccacg attactggaa tgtttggtgt gtcctgtcat gccgaactgt caagatcagc 360 agcagcaagt gaatatgtgt ggaaggaaga caccagggtt ggagatcaat ttgaattcgg 420 aaccttaccc tttaagcgaa atgaccccaa agattgggaa caaatctggg aacgtgcaaa 480 ggccggggat atcaacggga ttccagccga tgtgcgaatt caatgttata ggacacttag 540 gaccattaga gcagatttcg cggtacctga agctatggtt cgacagtgct ttgtgtattg 600 tggacccact ggtactggta agtcccgaag agcctgggca gaagccggta tggatgctta 660 tcctaaagat ccacgaacca aattctggga cggctatcga gatcaaaagc atgttgtcgt 720 tgatgaattt cgaggagcta ttgacatctc ccatatactt agatggctcg atcggtaccc 780 tactcttgtg gagatcaaag gatctgccac ctgtttggtc gccgaaaaac tgtggataac 840 tagtaatgtg catcccaatg aatggtatcc aatgttggat agtgcaactg tggatgcatt 900 gcttcgtcgt ttacaaataa cagtttttga ataaaaaaag ttacctatgg aatacgtagc 960 aggtggatct ggtgcggtgt taggttttat acacaaggat attcccgggg ctatagcagg 1020 ctataaatta ggtcgttcgt tatacagaaa cttacccaaa aaaaaacaat gcctccaatc 1080 aaaagaaaat ctccttctac acccaaatct gacaaaagat caaggggtag cattactcca 1140 ggtagtgcta gacgtgtttt gtttcaagct cgtgtcccga gacagcgatc tggtaccaat 1200 gttgttacag gtgctgacaa acggattggt aaaaaggtga aaaaggaagg tagggttaag 1260 cgattgaaag ttagtaaagc ttttcgaaaa aaggtgaaac aatcccttga aactcatagg 1320 ggtactggat ggtttcgtga aacagtcact attgaaaaat taaattgtat cgattcacaa 1380 caaaatgttc ttactccagg aagacaggtt aatggtacat ttggcaattt ttttagtcca 1440 acatatatta gatatgttgc atctcatctt tacaacaaat tagcaccaac tcaagctatt 1500 actgttaatg atactaattt gtatccagtt gcaaatttga agattgatgt tattgaacaa 1560 aattacgtta tgaaattgcg aaataatagt cctcgtactt acgatgttac attggttgac 1620 tattccccaa aaagtaataa ctcaattgcg acttcatttg aagatacatg gacttctgcc 1680 ttagttaatg gtggtccatt tggagcagca ggtacattgg ggcaagaatc aagagaaaat 1740 gtaggcaatg caacgaaaaa tactatgggt aatcatccta agtttatggc tgtaatgaga 1800 cattattatt caatggatac agttcatgta aaattggaac ctggtaaaga atattatcat 1860 aaagtcaaag gtccaaatat gatgacttat gattttaaca agtattttaa ggacagcaat 1920 tttcatgata ttcaaaagtt ttgtaaaggc actttggtaa tgtgcagtct tgatttgaca 1980 tcaactacat tagctacgca tggtagatat acggatatac caacagcaga tccccaggga 2040 atgatcattg aaactactca ttttaccaaa attaaatgcc cggaacgtgc aggctttcaa 2100 atcccaaatg ttgcagttcc aattggtagt attcaaccac tttctcaaca atcacaaaat 2160 gcttggagta ttgtttatcc cggtactgct caagcaggtg tggtcgaata tcgtcaagat 2220 gaaaatccac tttcaaatgt tatcgaagta taaaatatat tatatatttg cttctttcat 2280 tcttctcttt ccataataac ccttttgctt agggttaggt gttggtggtg gagtaggagg 2340 atactcttca gcaatcaact cgaaaatagg tccaagatct cttctgcctt caggtttgta 2400 ttgaggtctt gcataagtaa aatcacagtg agtcaatcta acaggacaag gagtattcat 2460 tttgatcaaa aaaatttaag tgaaaaaagt gaaaaaactc gctgtttata tacagatctg 2520 tcacgcgtga cgtcacagat cagtcatctc attggtcgtt gtcacacaac gtgttcttat 2580 attaaaagtc tatgacttca cactgttatt tcgtcaatgc ccactcacgg ggacgtggca 2640 ggccgtgaac tgcgcaagca gctgaacgcc gaacgtctgc ggatggtggc attgaagaaa 2700 tgtccgcacg aatagcagtc caaaggactg ccacaaatca acccggagtt gcattgtatt 2760 ggattcgttg gggggtcttt ag 2782 //