ID   FJ959080; SV 1; circular; genomic DNA; STD; VRL; 2072 BP.
XX
AC   FJ959080;
XX
DT   10-JUL-2009 (Rel. 101, Created)
DT   18-SEP-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Circovirus-like genome RW-D, complete genome.
XX
KW   .
XX
OS   Circovirus-like genome RW-D
OC   Viruses; ssDNA viruses; unclassified ssDNA viruses.
XX
RN   [1]
RP   1-2072
RX   DOI; 10.1099/vir.0.012955-0.
RX   PUBMED; 19570956.
RA   Rosario K., Duffy S., Breitbart M.;
RT   "Diverse circovirus-like genome architectures revealed by environmental
RT   metagenomics";
RL   J. Gen. Virol. 90(Pt 10):2418-2424(2009).
XX
RN   [2]
RP   1-2072
RA   Rosario K., Duffy S., Breitbart M.;
RT   ;
RL   Submitted (23-APR-2009) to the INSDC.
RL   College of Marine Science, University of South Florida, 140 7th Ave S, St.
RL   Petersburg, FL 33701, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2072
FT                   /organism="Circovirus-like genome RW-D"
FT                   /strain="RW-D"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Southwest Florida"
FT                   /isolation_source="reclaimed water"
FT                   /note="assembled from metagenome data"
FT                   /db_xref="taxon:642254"
FT   stem_loop       join(2048..2072,1..17)
FT                   /note="contains nonanucleotide sequence (aagtattac)"
FT   CDS             29..1078
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="similar to structural proteins; ORF1"
FT                   /db_xref="UniProtKB/TrEMBL:C6GII1"
FT                   /protein_id="ACQ78162.1"
FT                   /translation="MRRRPAYVGPSWGGSRIGGANIPMNTRAKRRRRKIIPLLWNSGSK
FT                   LANNLNLGFGSRGRGPGSMVSRIRNYKMEISVKPVGTGSSYSYYRYTRRPDKGSRIVKT
FT                   QQAPLFSVFNSGSRMTSLQGEQGYTTLSVMTGAKLRSLYLETSANQDGRFWVGYARCRW
FT                   MFQNQSEATTHLTIYEFTTRRDSNVGPSLAFQSGLASIQAGVGSNASDIGATPFMTPRF
FT                   TENFRILKKYSVELAQGRSHIHTALYRMNKNYSDSLYQMDGSSDVVLGGWTRGLFVIAH
FT                   GTPYNSFATKTNVSTTPVAIDIVANETYHTYTNLQNKSIFEVQSDFPTFTDGRIIDIGS
FT                   GDPEAVDEV"
FT   TATA_signal     1074..1079
FT   CDS             1147..2067
FT                   /codon_start=1
FT                   /product="putative Rep protein"
FT                   /note="replication-associated protein similar to circovirus
FT                   Reps; viral replication protein-like protein (PF02407);
FT                   ORF2_Rep"
FT                   /db_xref="GOA:C6GII2"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:C6GII2"
FT                   /protein_id="ACQ78163.1"
FT                   /translation="MLAQAPGRYRNWVITVNNWTENDYKLALLSPYRYIIIGRERGECN
FT                   TPHLQIYLQLYHAKSFDTVKQNFFPRAHLEASHSKPRQARAYCTKEHYFEYGEMSTQGK
FT                   RTDLQVAQELLDSGISIRQALESEMITSMGALAAYEKLQKYYTVHRPRPRVVWIYGPAG
FT                   SGKTDKAYSISGPDVYKSDLIKEGWFDGYDRHRSIIIDDLEIDRDDKKTFGLLLSLLDK
FT                   NPQKVNVKGSSASILADTIVITCQQAPWHIWYHPSDNMSLPFKHMATREEIERDVDLRQ
FT                   IMRRITEIIHLTDTDKVKYPEVTEV"
XX
SQ   Sequence 2072 BP; 677 A; 390 C; 428 G; 577 T; 0 other;
     acctttagtc acttctgtgc aacatactat gagaagaaga cccgcatacg taggccccag        60
     ctggggcggt tcacgcatcg gcggcgcaaa tattccgatg aatacaagag ctaaacgccg       120
     ccgtagaaag ataataccct tactgtggaa ttcaggcagt aagttagcca ataacctaaa       180
     cttaggtttt ggctctagag gaagaggacc tggctcaatg gttagcagga tccgtaatta       240
     taaaatggaa ataagtgtaa aaccagtagg tactggttca tcttattctt attaccgtta       300
     tacgcgcaga cctgacaagg gatcgcgtat tgtaaaaaca caacaggctc cattgtttag       360
     tgttttcaat tctggctcac gaatgacatc tttacaaggt gagcaaggat atacaactct       420
     ttcagtaatg actggtgcaa agctccgttc attatatctt gaaacatctg ccaaccaaga       480
     tggtagattt tgggttggct atgcacgttg tagatggatg ttccagaacc aatctgaggc       540
     tacaacgcat ttaacaattt atgaatttac aacacgacgt gattcaaacg tcggtcctag       600
     cttagctttc caatctggat tagcttcaat tcaagctggt gtaggttcaa atgcctctga       660
     tataggagct acaccgttca tgacaccacg ttttacagaa aactttagaa ttctgaaaaa       720
     gtatagtgtt gaactagctc aaggtcgctc acatattcat actgcactat acagaatgaa       780
     taaaaactat agcgactcac tatatcagat ggatggatca tctgatgtag tgctaggtgg       840
     atggacacgt gggttatttg taatcgccca cggtacacca tataacagtt ttgcaacgaa       900
     gacaaatgtc tcgacaaccc ctgttgcgat agacattgtc gctaatgaaa cgtatcatac       960
     ttacacaaat ttacaaaaca aatcaatatt tgaagttcaa tctgacttcc caacattcac      1020
     agatggtcga attatcgaca tcggtagtgg tgatccggaa gcagttgatg aggtataaaa      1080
     tgtacaattt tacacatata gacgattggc aggcctgggc cattctcctt tggtttaacc      1140
     aaggacatgc tggcccaagc gcctggtaga tatagaaatt gggttataac agttaataat      1200
     tggactgaaa acgattataa acttgcactt ttatctcctt atcgttatat aataataggt      1260
     agggagagag gtgagtgcaa cacaccgcat ttacaaattt atttacaatt gtatcatgcg      1320
     aagtcatttg acactgttaa acaaaacttt tttcctcgag ctcatttaga agcaagccat      1380
     agtaaacctc gtcaggctcg agcgtattgt actaaagagc actatttcga gtacggggaa      1440
     atgtctaccc aaggtaaacg aacagatcta caggtagctc aagagctact agattctggt      1500
     attagtatac gacaagcatt agaatccgaa atgattacat caatgggtgc cttagcagca      1560
     tatgagaaat tacaaaaata ttataccgtt catcgtccta gaccgcgagt ggtatggatt      1620
     tacggtccgg ctggatctgg aaagactgat aaggcatata gcatcagcgg tccagatgtt      1680
     tataaatccg acttaataaa ggagggatgg tttgatggtt atgatagaca tcgatcgatt      1740
     atcatcgacg atttggaaat tgatagagat gataagaaaa cattcgggtt attactttca      1800
     ctattagata aaaatccaca aaaagtaaat gtcaaaggtt cgtctgcatc aatattggct      1860
     gataccattg tcatcacctg tcaacaggct ccctggcata tttggtatca tcctagtgac      1920
     aatatgtctt tgccttttaa gcatatggct acaagagaag aaatagaaag agatgtcgat      1980
     ttaagacaga tcatgcgtag aattacagaa ataatacatt taacagatac agataaagta      2040
     aaatatccag aagtgactga agtataagta tt                                    2072
//