ID   FJ959079; SV 1; circular; genomic DNA; STD; VRL; 1803 BP.
XX
AC   FJ959079;
XX
DT   10-JUL-2009 (Rel. 101, Created)
DT   18-SEP-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Circovirus-like genome RW-C, complete genome.
XX
KW   .
XX
OS   Circovirus-like genome RW-C
OC   Viruses; ssDNA viruses; unclassified ssDNA viruses.
XX
RN   [1]
RP   1-1803
RX   DOI; 10.1099/vir.0.012955-0.
RX   PUBMED; 19570956.
RA   Rosario K., Duffy S., Breitbart M.;
RT   "Diverse circovirus-like genome architectures revealed by environmental
RT   metagenomics";
RL   J. Gen. Virol. 90(Pt 10):2418-2424(2009).
XX
RN   [2]
RP   1-1803
RA   Rosario K., Duffy S., Breitbart M.;
RT   ;
RL   Submitted (23-APR-2009) to the INSDC.
RL   College of Marine Science, University of South Florida, 140 7th Ave S, St.
RL   Petersburg, FL 33701, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1803
FT                   /organism="Circovirus-like genome RW-C"
FT                   /strain="RW-C"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Southwest Florida"
FT                   /isolation_source="reclaimed water"
FT                   /note="assembled from metagenome data"
FT                   /db_xref="taxon:642253"
FT   stem_loop       join(1174..1803,1..27)
FT                   /note="contains nonanucleotide sequence (tagtattac)"
FT   CDS             complement(join(1782..1803,1..848))
FT                   /codon_start=1
FT                   /product="putative Rep protein"
FT                   /note="replication-associated protein similar to circovirus
FT                   Reps; viral replication protein-like protein (PF02407);
FT                   ORF1_Rep"
FT                   /db_xref="GOA:C6GIH9"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:C6GIH9"
FT                   /protein_id="ACQ78160.1"
FT                   /translation="MNKRIRNVCFTGFNETGYDFNENQMKYLIVGKEICPTTGKEHWQG
FT                   YVELKNAKTFSAIKKLFKDNKLHLEERKASAQCASNYCKKEGNFKEFGKISEQGKRTDL
FT                   IELKDDILAGKKNCTEVREENPELYHQYGRTLDKLEDDYLCKQKRNWMTKGIWIWGPTG
FT                   CGKSRWAYETYPNAYTWADDKDWQDCYSGQETIIIDDFRGNIKFQNLLKMIDRYEFKLS
FT                   RRGRVPFPLLAKTIIITSSMPPEKVYKNLSVDDSIEQLKRRCKIIELPKCTEENYTEVV
FT                   RVILENSV"
FT   CDS             950..1609
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="weak similarity to circovirus structural proteins;
FT                   ORF2"
FT                   /db_xref="GOA:C6GII0"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="UniProtKB/TrEMBL:C6GII0"
FT                   /protein_id="ACQ78161.1"
FT                   /translation="MPYYRKKRVYRKKRPMRRNRRKYSRLPRRSLGNPNQKVYYFKRFT
FT                   TLGTIVVTSSSANAYGASVFSLDQLPGYTEFTNLFDFYKIKAIKLSFIPTSNVTLQTGN
FT                   SSTTVANSIYNNRIFTVIDYNDAGIPTSVNELREYSNCKWSPNNKIHKRYIVPNPLADA
FT                   TDDSTISLMNKPWVPTTNYAMDYYAIKWAIENTAAGVGVELYKMEAKFYIACKSPK"
XX
SQ   Sequence 1803 BP; 543 A; 321 C; 268 G; 671 T; 0 other;
     accctgacca cttctgtgta attttcttct gtgcattttg ggagctcaat tattttacac        60
     cttcttttaa gttgttcaat tgagtcatct acacttaagt ttttataaac tttttcaggt       120
     ggcatactgc ttgtaattat tattgtttta gctaataatg gaaatggtac tcttccacgt       180
     ctagatagtt tgaattcata tcggtcaatc atttttagta agttttgaaa tttaatgttt       240
     cctctaaaat cgtcaattat aattgtttct tgtccagaat aacaatcttg ccagtctttg       300
     tcatcagccc aagtgtaagc attaggataa gtttcataag cccatcttga tttaccacat       360
     ccagtaggtc cccaaatcca aattcctttg gtcatccaat ttcgtttttg tttgcataaa       420
     taatcgtctt ccagtttgtc caatgtacgt ccgtattggt gatatagttc tggattctct       480
     tctctgactt ctgtgcagtt tttttttccc gctaaaatat cgtcttttaa ttcaattaaa       540
     tctgttcttt ttccttgttc gcttattttt ccaaattctt tgaagttacc ttctttttta       600
     cagtaattac ttgcacattg tgcgctagct ttacgttctt ctaaatgtaa tttattatct       660
     ttgaataatt ttttaattgc gctaaaagtt tttgcatttt ttaattctac ataaccttgc       720
     caatgttctt ttccagttgt tggacaaatt tcttttccta caattaagta tttcatttga       780
     ttttcgttaa aatcataacc agtttcattg aaaccagtaa aacacacatt tctaattcgc       840
     ttgttcattt tttatataat aaatattatt tctttaagta cttttaactt ttgtgcagaa       900
     aaaaaaaaaa ttgaaaattt ttaaaaaatt tttttacttt taacataaaa tgccttacta       960
     ccgaaagaaa cgtgtctaca gaaaaaaaag acctatgaga cgaaatagaa gaaaatattc      1020
     aagacttcct cgaagatctc ttggtaatcc taatcaaaaa gtctactatt tcaaacgatt      1080
     cacaactctt ggaactatcg ttgtaacatc ttcttctgca aatgcgtatg gagcatctgt      1140
     tttttcactc gatcaattac caggatatac tgagtttaca aatttatttg atttttataa      1200
     aattaaagct ataaaactat cgtttattcc aacatctaat gtaactttac aaactggtaa      1260
     ttcttcaaca actgtggcta attcaattta taataataga atttttacag tcatagatta      1320
     taatgacgct ggaataccaa cttctgtgaa tgaacttcgt gaatattcta attgtaaatg      1380
     gtctccaaat aataagatcc ataagaggta tattgtacca aatcctttgg ctgatgcaac      1440
     tgatgattct acgatctcat tgatgaataa gccttgggtt ccaacaacca attatgctat      1500
     ggattactat gctattaaat gggccattga aaacacagct gcaggcgttg gtgtcgaatt      1560
     gtataaaatg gaagctaaat tctacatcgc ttgtaaatcg ccaaaataat ttaaattttt      1620
     tttaaattat tgtatgtaaa gccgccggca gggcctcggg ggcggagcca ccgcttgaaa      1680
     aaaccaaacc aatcattttc cccgccgccc tttgaagggc aaaggcggaa ggtagaagcc      1740
     cccttctagg gggttggggg tatgtggtca gggagaaaat tctacacaga attttctagt      1800
     att                                                                    1803
//