ID FJ810126; SV 1; linear; genomic DNA; STD; VRL; 5759 BP. XX AC FJ810126; XX DT 11-MAY-2009 (Rel. 100, Created) DT 18-JUN-2009 (Rel. 101, Last updated, Version 2) XX DE Culex pipiens densovirus, complete genome. XX KW . XX OS Culex pipiens densovirus OC Viruses; ssDNA viruses; Parvoviridae; Densovirinae; OC unclassified Densovirinae. XX RN [1] RP 1-5759 RX DOI; 10.1128/JVI.00524-09. RX PUBMED; 19386710. RA Baquerizo-Audiot E., Abd-Alla A., Jousset F.X., Cousserans F., Tijssen P., RA Bergoin M.; RT "Structure and expression strategy of the genome of Culex pipiens RT densovirus, a mosquito densovirus with an ambisense organization"; RL J. Virol. 83(13):6863-6873(2009). XX RN [2] RP 1-5759 RA Baquerizo Audiot E., Abd-Alla A., Jousset F.X., Cousserans F., Tijssen P., RA Bergoin M.; RT ; RL Submitted (09-MAR-2009) to the INSDC. RL Laboratoire de Pathologie Comparee, Universite Montpellier II, Place Eugene RL Bataillon, Montpellier 34095, France XX FH Key Location/Qualifiers FH FT source 1..5759 FT /organism="Culex pipiens densovirus" FT /host="Culex pipiens pipiens" FT /mol_type="genomic DNA" FT /country="France:Montpellier" FT /collection_date="1998" FT /db_xref="taxon:185638" FT mRNA join(416..1720,1774..2758) FT /product="2.4 kb NS" FT gene 437..799 FT /gene="NS-3" FT CDS 437..799 FT /codon_start=1 FT /gene="NS-3" FT /product="nonstructural protein NS-3" FT /db_xref="UniProtKB/TrEMBL:C4P0S0" FT /protein_id="ACQ76569.1" FT /translation="MEVPSLFDQCLKKCVFSDIKVEEYLKNYSLPIFAEVKTLYLSQRF FT CWGQLYNIPSIGILYDIPHAFTTDEKCLCIERNNKVKYYGQYSCTPLYTNFDIPEKNED FT YSKIIYNGQTDVQRKN" FT mRNA join(1045..1720,1774..2758) FT /product="1.8 kb NS" FT gene 1057..2756 FT /gene="NS-1" FT CDS join(1057..1720,1774..2756) FT /codon_start=1 FT /gene="NS-1" FT /product="nonstructural protein NS-1" FT /db_xref="GOA:C4P0S1" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="UniProtKB/TrEMBL:C4P0S1" FT /protein_id="ACQ76570.1" FT /translation="MLNNDGSEVLSADSNFKNGIQTDIRNYLEFPLSPATMSFSGLVDG FT NTSRSEGEYSRGSWPSMAQFARQAGEAYEDLAKEIEEMGDIFIRYVTGKNIKNTWRYLS FT DVFFPRGESNANFAMERLREYGRSRRDRMFGFINEGDHIHIIHDCAYSGGHCRDVFRKH FT LEPYGSFGPARPENKPIWKFTTTDWYDVFQYFFLRKLRNGNDTGEIYIGGESWKKPSND FT QLVRWEKKLGTWRPLVRQQDNGDHLLDQRSGLKRSNREVAGTPFDEVYGKKTKSSGKYA FT AIKQETKALLLKYYPCPLSAIRDVSEFRNNNLLSDPKNREYIDAAFVDFGKDVNQMTIR FT QIYEILKGHTDPIFYAGMEYATQEESFAILEDFLKFQFEDNDEKITQFLVDLIDVLDKR FT VPKQNAFAVISPPSSGKNFFFDMIMAICLNYGQLGQANRHNLFAFQEAPNKRLLLWNEP FT NYESAMTDTIKMMMGGDPYTVRVKYQGDTHVTRTPVLILTNNYVSFLQESAFKDRIKVY FT KWREAPFLKDVHVKPYPMAFFDILNKYNIQF" FT gene 1109..1986 FT /gene="NS-2" FT CDS join(1109..1720,1774..1986) FT /codon_start=1 FT /gene="NS-2" FT /product="nonstructural protein NS-2" FT /db_xref="UniProtKB/TrEMBL:C4P0S2" FT /protein_id="ACQ76571.1" FT /translation="MEFKQILETIWNSHSAQQPCHLVGWWMGILQEVKENIPEDHGPQW FT HNLLGKLEKLTKIWQKKSKKWEISSFDTLLEKTSKIPGDILATCFSQEESQMLISLWKD FT CVNMADLDETECLALSMKEITSTSSTIVPIPEDIAGTSSESTWNLMDHLAQLGQKTNQS FT GNSPPRTGMMSSSISFLENSEMGTTQAKYTLEEKVGKNRVTINWYDGKKSLELGDRWYD FT SKIMGITCSINDPVSKDLIEKLLGHLSMKFMAKKPNRQENMQLLNRKRKRYY" FT gene complement(2746..4960) FT /gene="VP1" FT mRNA complement(2746..4960) FT /gene="VP1" FT /product="structural protein VP1" FT /note="2.3 kb" FT CDS complement(2765..4957) FT /codon_start=1 FT /gene="VP1" FT /product="structural protein VP1" FT /db_xref="GOA:C4P0S3" FT /db_xref="InterPro:IPR003433" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:C4P0S3" FT /protein_id="ACQ76572.1" FT /translation="MSSTLRRRIPFSERTPLLETFEVEEAEEVAAEGLFASIEEAAASL FT DLTPLAPVGLWVGGLAGLGYGAYEIYEHLLKSKPKITLRKVEREHKKAVKALEKEKFDL FT ETLEDQHGDVDIVPIEQQNIEGERAGLVPAPYKYAGPGNSLNRGPAYDLVDESARQHDI FT AYDKAKSPEDIHKADRQFLTEAGNYVAEGIAGKGSISQTLGGIVTGAGIGIKHLAEKAT FT GNIIYPPMAPPKRGVADSSTGGTPAKQAITQIPGPSSADAGMTLTGTGKEQASGGASSD FT GLAEYHIERPISLFGSKISTYRKVHKFMTFGFAPKIITSDSNSNSRWLTTYLAEVPWHL FT PCFYLTPSEFNLMPIGSRVKDVSIQVIYRGSTIQFETASSATSLATLNQINDIAVATAL FT NKTGYGSNVSFTEFTAGKPMIPSKIAKPRYKPIPGKYRGMVADFYGTNNNHPSFASYIP FT KHHVGRQCNIYNYHALSDEAATDTDGATTNSWGGWVCLAKHIQQMDGKTCVNQVVLSST FT YSPRMGMIKNPLKSFGRGLPQPNAGGTMTIVTQGNLVAARSAHIMKDTAGSETTPGING FT DRLQTSEVLINLSNDNDGTFPVVDDYDIYTPIEKSQIARSGFWGAQDPHIMPSMHIGVQ FT PVPALSSGALILEEGVFDNWTDTRAYWEVIATMNVVEHTPTEFPYANVPNVPPGEVVIS FT LPSNEIPQNYIDPENDHAPYAGLYKTFSGDILPRAT" XX SQ Sequence 5759 BP; 1812 A; 1085 C; 1088 G; 1774 T; 0 other; ggtacccctt tgtaggccgt acttataaga ataccggtat tttcggggcc tacaaagggg 60 tacccaattg taggtaaaat ttccacagac tttcccccac ccataagaaa tacatggcag 120 tacccctgta gggggtgggt tgtaggtcgt tgatgtagta gaactcctta agagttaggt 180 caagtactca gaatgtatag tgttcacgcg atgacgtcat aggaccatga ctcacctctc 240 ccatcgttcg tgcctctctc tgtgagcctc ggttcgtgca ttggtcaaac atgtttaatc 300 atgaaaccgg ttttttcaaa ccttacgggg aacattggtc tgaattggct gatgcaataa 360 cctgttttat tgtgtattgc ttggtatata aggtggttgt cgcctgctgt agttcatcag 420 tcttgtggca accgtcatgg aagtaccatc tctcttcgat cagtgtttaa aaaagtgtgt 480 atttagtgat ataaaagtgg aagaatattt aaaaaactat agtttaccaa tatttgctga 540 agttaaaact ttatatcttt ctcaacgatt ttgttgggga caattatata atatccctag 600 tattggcatc ttgtacgata ttcctcatgc gtttacaaca gatgaaaagt gtttgtgtat 660 agaaagaaat aacaaagtaa aatattacgg acaatatagt tgtactcctt tgtatacaaa 720 tttcgatata ccagaaaaaa acgaagatta cagtaaaata atatataatg gacaaactga 780 tgtgcagaga aaaaattaaa tacgttgtac caagtctaca agaaatagcc ggagctgaat 840 tattgaatag tggtagtgtg cctaaagaat atttaaaagt gttgtataaa tttgattttc 900 ctgttcatac gattcaacaa aatcgctggt atcgaaaagg cttttacggc gattttactt 960 caaacgttcc ggtgccgttt aataaagcta taaataatcc aacagtaata gctgtattcc 1020 cctggaatcg cgacgaaatt tgtcagtaca agtttgatgt tgaacaacga cggatcagaa 1080 gtattaagcg cagactccaa ttttaaaaat ggaattcaaa cagatattag aaactatctg 1140 gaattcccac tcagcccagc aaccatgtca tttagtgggt tggtggatgg gaatacttca 1200 agaagtgaag gagaatattc cagaggatca tggccctcaa tggcacaatt tgctaggcaa 1260 gctggagaag cttacgaaga tttggcaaaa gaaatcgaag aaatgggaga tatcttcatt 1320 cgatacgtta ctggaaaaaa catcaaaaat acctggagat atcttagcga cgtgtttttc 1380 ccaagaggag agtcaaatgc taatttcgct atggaaagat tgcgtgaata tggcagatct 1440 agacgagaca gaatgtttgg ctttatcaat gaaggagatc acatccacat catccacgat 1500 tgtgcctatt ccggaggaca ttgccgggac gtcttccgaa agcacttgga accttatgga 1560 tcatttggcc cagctaggcc agaaaacaaa ccaatctgga aattcaccac cacggactgg 1620 tatgatgtct tccagtattt ctttcttaga aaactcagaa atgggaacga cacaggcgaa 1680 atatacattg gaggagaaag ttggaaaaaa ccgagtaacg gtaagtgttt attacttttg 1740 tatggctata actaaagtaa tattcattta cagatcaact ggtacgatgg gaaaaaaagc 1800 ttggaacttg gcgaccgttg gtacgacagc aagataatgg ggatcacctg ctcgatcaac 1860 gatccggtct caaaagatct aatcgagaag ttgctgggac acctttcgat gaagtttatg 1920 gcaaaaaaac caaatcgtca ggaaaatatg cagctattaa acaggaaacg aaagcgttat 1980 tattaaaata ttatccatgt ccattaagcg ctatacgcga tgtcagtgaa tttagaaata 2040 acaatttatt atcagatcct aaaaatcgtg aatatataga tgcagctttt gtagattttg 2100 gtaaagatgt taatcaaatg actatacgac agatttatga gatattaaaa ggtcatactg 2160 atcctatatt ttatgcagga atggaatatg ctactcagga agaatcgttt gctatattag 2220 aagacttttt aaaatttcaa tttgaggata acgacgaaaa aatcactcaa tttttagtag 2280 atttaattga tgtacttgat aaacgagttc caaaacaaaa tgcttttgca gtaatttcgc 2340 cacctagttc aggcaaaaat tttttctttg acatgattat ggcaatttgt ttaaactatg 2400 gacaattagg acaagcaaac agacataatt tgtttgcatt tcaagaagct cccaataaaa 2460 gattattact ttggaatgaa ccaaactatg aaagcgcaat gacagataca ataaaaatga 2520 tgatgggcgg agatccatat actgtaagag taaaatatca aggagataca catgtaacca 2580 gaactcccgt cttaatactt accaataatt atgtttcatt tcttcaagaa tctgcgttta 2640 aagatagaat taaagtgtat aaatggagag aagcaccatt tcttaaagat gttcatgtaa 2700 aaccttatcc tatggctttc tttgatatac taaataaata caacattcaa ttttaaatcg 2760 tttattatgt tgctcgtggt aaaatatcac ctgaaaatgt cttatacaat cctgcgtatg 2820 gggcatggtc gttctcggga tcaatataat tttgaggaat ttcattactt ggtagtgaaa 2880 taacaacttc tcctggagga acattgggta cattagcata aggaaattct gttggagtat 2940 gttcaacgac attcattgta gcaattactt cccaataagc tcttgtgtct gtccaattat 3000 caaatactcc ttcttctaag atcaatgctc cactagacaa agctggtact ggttgtacac 3060 caatatgcat agatggcata atatgaggat cttgtgctcc ccaaaatcca ctgcgtgcaa 3120 tttgagactt ttcaatagga gtatatatgt cataatcatc tactactgga aacgtgccat 3180 cattatcatt gcttaaatta ataagaactt cagaagtttg caatctatcg ccattaatac 3240 cgggcgtagt ttcagatcca gcagtgtctt tcataatgtg tgcacttcta gcagctacaa 3300 gatttccttg ggttacaata gtcatagtac cacctgcatt tggctgtggc aaaccacgtc 3360 caaaagattt tagtggattt ttaatcattc ccattctagg agaataagtc gaagataaaa 3420 ctacttgatt aacacaagtt tttccatcca tctgttgtat atgtttggct aagcataccc 3480 aacctcccca ggaattagtt gtagcaccgt ctgtgtcagt tgccgcttca tcactaagtg 3540 cgtgataatt atatatatta cactgcctac caacatgatg ttttggaata tatgaagcaa 3600 aactaggatg attattattc gttccgtaaa aatctgctac cattcctcta tattttcctg 3660 gaattggttt atatctcggc tttgcaattt tactaggaat cataggttta ccagcagtaa 3720 attcagtaaa ggaaacatta gatccatacc ctgtcttatt caaagctgta gcaacagcta 3780 tatcattaat ctgattaaga gtagctagcg atgtagcaga tgatgctgtt tcgaattgaa 3840 tagttgaccc tctataaata acctgaatag atacatcctt tactcttgat ccaattggca 3900 tcagattaaa ctcggacgga gttaaataaa aacatggtaa atgccatgga acttctgcca 3960 gataagttgt caaccatctt gaattactat tggaatctga tgttattatt tttggagcaa 4020 atccgaaagt cataaattta tgaactttac gatatgtact aattttagaa ccaaaaagtg 4080 aaattggacg ttcaatatga tattctgcta atccatctga agacgctcct cccgaagctt 4140 gttccttgcc cgtaccagta agcgtcattc ctgcgtctgc tgacgacggc cctgggattt 4200 gggtaatagc ctgttttgca ggtgtacctc ctgtggatga atctgcaact cctcgtttcg 4260 gtggggccat aggcggataa ataatattac cagttgcttt ttctgccaag tgttttattc 4320 cgattcctgc accagtaaca attcctccaa gagtttgact aatagaacct ttaccagcga 4380 ttccttcagc cacgtaattt ccggcctccg taagaaattg tctatccgct ttgtgtatat 4440 cttctggaga ttttgcttta tcgtaagcaa tatcgtgttg tctcgctgat tcgtcgacca 4500 aatcgtaggc aggtcctcta ttaagactgt ttcctggtcc tgcgtattta tatggagcgg 4560 gtaccaagcc agccctttca ccttcaatat tctgttgttc aataggaaca atatctacgt 4620 cgccgtgttg atcttccaaa gtttctagat caaatttttc tttttccaat gctttaacag 4680 cttttttatg ttctcgttct actttacgta atgttatttt gggtttagac tttagcaaat 4740 gttcataaat ctcatatgct ccataaccaa gtccagctaa acctccaacc cacaagccga 4800 ctggggctag cggtgttaaa tccaacgatg cagcagcttc ttctatcgat gcaaacaaac 4860 cttcagcagc tacttcttct gcttcttcga cttcaaacgt ttccaataaa ggagttcttt 4920 cagagaaagg tatacgacga cgaagtgttg aagacatact gtttacaatg tgttttattt 4980 ccattaaata taaacgtata atctttaaat gtattgatga ctatataagt cataacagtc 5040 ttgaatatat acttcaatat acatttacac aaatactttt gcacaaaata tgcacctagc 5100 tgtttttttt gattcattgg taatagtgta ctctaatata atacagcttt gatgtaaagt 5160 ttttacaacc aataaaaact tgataacttt cgcctgttac gtcgtttacg atgtacatcc 5220 actttgcacc agcattagct accattgcag gttgacctgt caaagtgacc catgtagatg 5280 gattaatgat tacagcattt cctacaacgg ttccaggaga agctccagtg gttaatgaat 5340 catggatata tctaaacgat ccagttccat tattccattt aatactcagg attcctgtat 5400 cgttcacagc aaaagataca tttccaatta ctaaatgggg agttgttaca attaccggag 5460 cagtaaatga aacattcgtt ctgtatgaac ccatgattaa aactaaccaa tgcacgaacc 5520 gaggctcaca gagagaggca cgaacgatgg gagaggtgag tcatggtcct atgacgtcat 5580 cgcgtgaaca ctatacattc tgagtacttg acctaactct taaggagttc tactacatca 5640 acgacctaca acccaccccc tacaggggta ctgccatgta tttcttatgg gtgggggaaa 5700 gtctgtggaa attttaccta caattgggta cccctttgta ggccccgaaa ataccggta 5759 //