ID FJ492744; SV 1; circular; genomic DNA; STD; VRL; 8242 BP. XX AC FJ492744; XX DT 16-SEP-2009 (Rel. 102, Created) DT 23-OCT-2009 (Rel. 102, Last updated, Version 2) XX DE Canine papillomavirus 6 isolate Zurich, complete genome. XX KW . XX OS Canine papillomavirus 6 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; OC Lambdapapillomavirus. XX RN [1] RP 1-8242 RX DOI; 10.1099/vir.0.014498-0. RX PUBMED; 19656968. RA Lange C.E., Tobler K., Ackermann M., Panakova L., Thoday K.L., Favrot C.; RT "Three novel canine papillomaviruses support taxonomic clade formation"; RL J. Gen. Virol. 90(Pt 11):2615-2621(2009). XX RN [2] RP 1-8242 RA Lange C.E., Tobler K., Ackermann M., Favrot C.; RT ; RL Submitted (26-NOV-2008) to the INSDC. RL Dermatology, Vetsuisse Faculty University of Zurich, Winterthurerstrasse RL 260, Zurich, Zurich 8057, Switzerland XX FH Key Location/Qualifiers FH FT source 1..8242 FT /organism="Canine papillomavirus 6" FT /host="Canis lupus familiaris" FT /isolate="Zurich" FT /mol_type="genomic DNA" FT /country="Switzerland" FT /collection_date="Apr-2006" FT /db_xref="taxon:658424" FT CDS 13..426 FT /codon_start=1 FT /product="E6" FT /db_xref="GOA:C8YJL2" FT /db_xref="InterPro:IPR001334" FT /db_xref="UniProtKB/TrEMBL:C8YJL2" FT /protein_id="ACU27457.1" FT /translation="MARPTTVKGLSERTGASFIDLLLPCNFCSRFLTNIEKAFFDLSPF FT QLVWRNDCVYGCCQKCIRDCALLEESFYFEKFLSESELEELWTRSKVIVRCHRCMKSLT FT EIEKNSCKFEKIIRLVRGQYRGLCDLCRLSVEG" FT CDS 423..716 FT /codon_start=1 FT /product="E7" FT /db_xref="GOA:C8YJL3" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:C8YJL3" FT /protein_id="ACU27458.1" FT /translation="MIGQEPTLPDIVLTAQLPPETVDLHCYEQIPAEEEEEEEPASRDL FT YRVAALCGLCGSRVRFVCLAESDDIRHFQRLLFNLSFVCLRCVKTEKLNHGG" FT CDS 706..2517 FT /codon_start=1 FT /product="E1" FT /db_xref="GOA:C8YJL4" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:C8YJL4" FT /protein_id="ACU27454.1" FT /translation="MADKKGTLEDVNEWVLVEAECSDVDDTLEDLFDKSTESDISDLVD FT NASVDQGNSLQLFQQQEQTESEEQLQQLKRKYFQSPEQKALLSLSPQLEAISISSRTSK FT KAKKQLFGDDSGIELSHHEADDSVAEGEKQVETESEDSSLKPGQNGAEALFRAKNKRAF FT MLAKFKDGFCVSFMDLVRVFKSDKTCSVDWVVCGLYLIEERTEAAKVLLQDYCEYIYFN FT QIGLVCLYLLSFKSQKSRETVQKLLTKLFDCKDDQLMLEPPKTRSTAVALFWYKKSMVS FT SVYTYGVLPDWIAKQTLLTHQFAGEKPFDLSRMVQWAYDNEYFEESEIAYYYACLAETD FT ENAIAFLSSNNQAKHVRDCATMCRYYKRAEMQKMTMSHWIYQRCQAAKGEGSWKEIVKF FT LRHQTIEFISFLADFKKFLRGTPKKNCLVFWGPPNTGKSLFCMSLLNFLKGRVISFVNS FT RSQFWLQPLSDTKIGLLDDATRPCWDYFDTYLRNALDGNPISIDCKHKAPFQIKCPPLM FT VTTNVNVWGDERWKYLRSRISVFCFASQFLFDEDGSPGFVLNDKSWASFFERFWTHLEL FT SDQEEEGEDGESQQGLRLFTRGTSESV" FT CDS 2459..3625 FT /codon_start=1 FT /product="E2" FT /db_xref="GOA:C8YJL5" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:C8YJL5" FT /protein_id="ACU27455.1" FT /translation="MENLSKALDSLQEELLSLYEKNSGDIADQIRHWNLVRKEQVLFHF FT ARKNGVSRIGMSPVPPQSVSQQKAKSAIEQEILLQSLADSQYGSERWTLSDTSKERLLA FT DPPYCFKKNGKQVDVRFDEQPDNLVRYVLWQYIYFQTESDTWSKTEGKLDNLGLYYLDE FT HHFKVYYVDFRKEAEKYSKTGRYEVLSKLTTPAVPTSPFAATGPATGGDASTSGATARP FT STPKKKALPTTPRRSRRYLRPSSRETPRRRGFGRRREGELAGHSTPSPGLVPPSPGEVG FT QRTQTTPKGNRTRLARLLLDAKDPPVIILKGGPNSLKCIRYRLKSKFSSLFSRASTTWQ FT WTVSDGTERWGRSRMLLSFKDTAQRELFLHTVQLPKSVQYSLGSFDDL" FT CDS <3036..3389 FT /codon_start=1 FT /product="E4" FT /note="start site not determined" FT /db_xref="UniProtKB/TrEMBL:C8YJL6" FT /protein_id="ACU27456.1" FT /translation="QHLLFPLVLSQPPDRPPAGTPPRRGPPPDLAPPRKKLYPQLRDDL FT DDIYGRRRERPLDDEDSEDEERENWPAIPLPRQGLSRRLQEKLDSALKQLQKEIEHDLR FT DFSSMLRIPLSLF" FT CDS 4823..6358 FT /codon_start=1 FT /product="L2" FT /db_xref="GOA:C8YJL7" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:C8YJL7" FT /protein_id="ACU27460.1" FT /translation="MLTRKRRAAPSDIYPQCKISNTCPPDILNKYEQSTLADKILKYGS FT AGVFLGSLGIGTAKGTGGGTGYVPLGGGGVRLGTRVTTIRPTLPISSLGPSEVIPVDAI FT DPLGPAIIPPERFPTAVEDPFTISPPRFPSIIEEGTVTISTTESTVTELPLSTPKITTD FT EQPAILEVTPETRSPRIISRTQYSNPTFEVSLTTTSGSGEASFTDHIVVEGHSGGQLIG FT EQIPLRDLSSRSFDTTIQEETAFTTSTPRADAPPDRPPHYYNRRLQQIKVTDPDFITRP FT RALVTFENPTFEESVDLIFNQDIADLAQAAPNEDFRDLVTLSRPYYSRTDLQGVRVSRF FT GQKASIRTRSGLTIGPQSHYYYDISDVAPAENIELTPIGNFPLGEQSGEAVITLGTDDF FT DVVSLAESLLETYSDEFLLDEIESIANDLQLVIGSRREQQPISVPNLIKPSPQVFPDFE FT GVHVKYPSDSDNPLIPLHPESTPAISFDIYGDGLNFYLHPSLLRKKRRKRYFY" FT CDS 6368..7876 FT /codon_start=1 FT /product="L1" FT /db_xref="GOA:C8YJL8" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:C8YJL8" FT /protein_id="ACU27459.1" FT /translation="MAVWLPAQNKFYLPPQPATKVLSTDEYVTRTSIFYHASSDRLLTV FT GHPLYDIIKKDRDNEIIVPKVSPNQYRVFRLQLPDPNNFAFGDKSLFDPERERLVWALR FT GLEIDRGQPLGVSVTGNTTFDRYSDVENPNKNPTDHDKENTDPRVNVALDPKQTQLFLV FT GCKPAIGEHWIQARWCVGQAHEDQQCPPIELKNTLIQDGDMVDIGFGAMDFANLQQYKS FT GVPLDIANGVCKYPDYIKMANDPYGDSCFFYVRREQLYARHLFTRSGSVGNEGEVERDI FT ASKQDKYPTINYFATPSGSLVSTEAQLFNRPYWIQRSQGQNNGIAWENQIFLTVVDNTR FT GTPLTITIGKNDAGVQGAYKASDYKTYLRHVEEFDISVILQLCKVKLTPENLATIHTMN FT PDIIEGWHLNMNPPTGAFDDSYRYIDSLATKCPKNVPPKEKVDTYADYKFWVVDLRDKL FT TEQLDQTSLGRKFLFQTNVLRNGIKRPRPAASRPRTVKKKRANK" XX SQ Sequence 8242 BP; 2604 A; 1566 C; 1749 G; 2323 T; 0 other; ttgggggcat tcatggcgcg accgacaacg gtgaaaggtc tctcagagag aactggagct 60 tcatttattg acttgctttt gccttgtaat ttttgctcac gctttcttac taacatagaa 120 aaagcttttt ttgacttatc accttttcaa cttgtatgga ggaatgactg tgtgtatggt 180 tgctgtcaaa aatgcattag agattgtgca ttgctggaag aatcttttta ttttgaaaaa 240 tttttatctg aaagtgagct tgaggagctt tggacgcggt caaaggtgat tgtaaggtgc 300 caccggtgca tgaaaagcct tacagaaatt gaaaaaaact cttgtaaatt tgagaagatt 360 ataaggttgg taagaggtca gtatagggga ctttgtgatt tgtgtcgctt gtcagttgaa 420 ggatgattgg gcaagaacct actttaccag acattgtgct gacagcgcag ctaccaccag 480 aaacggttga cctgcattgc tatgagcaaa taccagctga agaggaggag gaggaggagc 540 ccgcgtcccg tgatttatat cgggttgcag ccctttgtgg attatgtggt agcagggtga 600 ggtttgtctg ccttgcagaa agcgacgata ttcggcactt tcaaaggctt ctttttaatc 660 tgagctttgt ttgtctgcgt tgcgttaaga ctgagaagct aaatcatggc ggataaaaaa 720 ggtactttgg aggatgtgaa tgaatgggtg ttagtggaag cagaatgtag cgatgtagat 780 gataccttag aagatttatt tgataaaagc actgagagtg atatctctga tctagtagac 840 aatgcttcag tagatcaggg aaattccctg caactatttc aacaacagga gcaaacagaa 900 tctgaagagc agttacaaca gctaaaacga aagtattttc agagcccaga gcagaaagct 960 cttttgagcc ttagtccgca gttagaagct ataagtattt cttcgcggac ttctaaaaag 1020 gcaaaaaagc agctgtttgg ggatgacagt ggaatagaac tttcgcatca tgaagctgat 1080 gattctgttg cagaggggga aaaacaggta gagactgaat cagaagactc ttctttaaag 1140 ccagggcaaa atggcgcgga agcattgttt agagctaaaa ataagcgcgc gtttatgctt 1200 gctaaattta aagatgggtt ttgcgtaagt tttatggatc ttgttagagt ttttaaaagt 1260 gataagactt gcagtgtgga ctgggttgtt tgtggacttt atttaattga agaacgtact 1320 gaggctgcaa aagtgttatt gcaagactac tgtgaatata tttattttaa tcagattgga 1380 cttgtatgct tatatttact aagttttaaa agtcagaaaa gcagagagac agtacaaaaa 1440 ttgctaacaa aattatttga ctgtaaagat gatcaattaa tgttagaacc tccaaaaaca 1500 aggagtacag cagttgcttt attctggtat aaaaaaagta tggtttcatc agtgtacaca 1560 tatggtgttt tgcctgattg gatagcgaag cagacgcttt tgactcatca gtttgctggc 1620 gaaaagccat ttgacttgtc tagaatggta caatgggctt atgacaatga atattttgag 1680 gaaagtgaaa ttgcatatta ttatgcctgt ctggcagaaa cggatgaaaa tgcaattgct 1740 tttttaagct ctaacaatca ggcaaaacac gtgcgcgact gtgcaacaat gtgcagatat 1800 tataaaagag ctgagatgca aaaaatgaca atgtcacact ggatttatca gagatgtcag 1860 gctgctaaag gagaaggtag ctggaaagaa atagttaaat ttttaagaca ccagacaata 1920 gaatttattt cttttcttgc tgattttaaa aaatttttgc gtggcacccc taaaaaaaac 1980 tgcttagttt tttggggtcc tcctaataca ggaaagtctt tgttttgcat gagcctactg 2040 aattttttga aaggcagggt aatatcattt gtgaatagca ggagtcaatt ttggttgcag 2100 cctttgtcgg acaccaagat tggtctttta gatgatgcta caaggccttg ctgggattac 2160 tttgatacat atttaagaaa tgcattagat ggcaatccta tcagtattga ctgcaaacat 2220 aaagctccct ttcagataaa atgtccaccc ctgatggtca caacaaatgt gaatgtttgg 2280 ggtgatgagc gctggaaata tcttcgcagt agaatttctg ttttctgctt tgcctctcaa 2340 tttctttttg atgaggatgg gtctcctggt tttgttttaa atgacaaaag ctgggcctct 2400 ttttttgaaa ggttttggac ccacttagag ttaagtgatc aagaagaaga gggggaagat 2460 ggagaatctc agcaaggcct tagactcttt acaagaggaa cttctgagtc tgtatgaaaa 2520 aaacagtggc gacatagctg atcaaattag acactggaat cttgtcagaa aggagcaggt 2580 gctgtttcat tttgctagga aaaatggtgt gagcagaata ggcatgagcc ctgtgcctcc 2640 acaatctgtt tcacagcaaa aagctaaaag tgcaatagag caggagattc ttttgcagtc 2700 acttgctgac tcacaatatg gatctgaacg ctggactctg tcagacacta gtaaggagag 2760 attattagct gacccaccat actgctttaa gaaaaatggg aaacaagtag atgtaaggtt 2820 tgatgagcag cctgacaacc ttgttagata tgtgctgtgg cagtacattt actttcaaac 2880 tgaaagtgac acttggagca aaacagaagg aaaattagac aacctaggcc tgtattactt 2940 ggacgagcat cattttaagg tgtactatgt tgacttccga aaggaagctg agaagtatag 3000 caaaactggt agatatgagg tcttgagtaa actgacaaca cctgctgttc ccactagtcc 3060 tttcgcagcc accggaccgg ccaccggcgg ggacgcctcc acgtcggggg ccaccgccag 3120 acctagcacc cccaagaaaa aagctttacc cacaactccg agacgatcta gacgatatct 3180 acggccgtcg tcgcgagaga cccctcgacg acgaggattc ggaagacgaa gagagggaga 3240 attggccggc cattccactc cctcgccagg gcttgtcccg ccgtctccag gagaagttgg 3300 acagcgcact caaacaactc caaaaggaaa tagaacacga cttgcgcgac ttctcctcga 3360 tgctaaggat ccccctgtca ttattttaaa ggggggtccc aattctttaa aatgtattag 3420 atacaggctt aaatcaaaat tttcttcttt atttagcagg gcaagcacaa cttggcagtg 3480 gactgtttca gatgggactg aaagatgggg aagatccagg atgctactaa gctttaagga 3540 cactgctcaa agagaattgt ttttgcatac tgttcagttg ccaaagtctg tgcaatattc 3600 tttggggtct tttgatgatt tgtagtagta aagcctgtaa gggtgttggt gcaggggtcc 3660 aaaaaaaata aagggtgagt tacacagata gcacacaagt aagggtggag ggtagattat 3720 ttttcaactt ttattagtaa aacatagagt taagttaata caagtaagac aatagaaaaa 3780 atcaacagtc atctcctcta acagtcatgt gtttttatta ttagacagtt aagtctctct 3840 agtttgttaa gcagtctctt ctctcttagt atagtgtttt aataaatagg catagttatt 3900 agtaaatagg cagtagagat aatcagtgaa atttcatttt gaacaaacat gtttccatat 3960 aagtcttagg cataggtcta cattcattaa gtcttttttt agtattgaaa ttaagtacca 4020 ttgctatagg tctataatag ttaaaggttt ccacagttta ttactattat aaatagaaag 4080 atgtataggt agtccaaaag cattagtgta agtgtataaa actgcagtag taatgttcta 4140 taagcataca acttgcatag ataccatcca ccactaacta actcttaaac ttgtcaacgc 4200 acacaaaaaa gttgccaatg ggaatgaatg catggtttga atgttttgta taactgctat 4260 atatttctaa gtctaagtcc tatctccttc cttttttttt taaagaagtg tctatttttt 4320 tttaatcttg tctgaaactg gaacaaccaa ctctttgata ttttgacttt tgtattctct 4380 gtacaccttt agacagaata tcttcacatt ctggcaccat ctagtaaaca cgggtcacgc 4440 tttatgtatt atcacctttc acctatgtta taaaaactaa gtaatctcac atttgtatac 4500 atacagcaaa catcacttcg ttcaaaaaca tatatgcaaa tatacagaaa ctgaactatc 4560 atcagaaact aaaaaaaaag aagactaaaa ggaaaaccag tcacagtaat atagcaatac 4620 catcttgctg cttcttgcta cataggcaac ataacaccag ttgcccttgc tacaggagag 4680 tttcacctta ctcagcgcta tatttaccca acccaacctg cgcagaccaa agtccccgac 4740 ggtcaactgt aaatagtctc cccaaatccc cctgctcatt gtcctagcgt atactcacca 4800 aaaaaaggat cctgctttca gcatgcttac gcgaaaaaga agagccgcac cctctgatat 4860 ttacccccaa tgcaaaatat ccaatacttg cccgcctgat atactcaata aatatgagca 4920 aagcacgctt gctgataaaa ttttaaaata tggtagtgct ggtgtttttt tgggaagttt 4980 ggggattgga acagcaaagg gtacaggtgg aggaacaggc tatgtgcctt tgggtggggg 5040 aggggtacgg cttggaacaa gagtaactac aataaggcct acactgccta taagcagttt 5100 aggtccatca gaagttatcc cagtagatgc tatagaccct ttagggccag ctataatccc 5160 accagagaga ttcccaacag cagttgaaga cccttttaca atttcaccac cacgattccc 5220 atcaattata gaagaaggca cagtaacaat aagtacaact gagtccacag taactgaact 5280 gcctctttca acccccaaaa taacaactga tgagcaacct gcaatattag aggtcactcc 5340 tgaaacaaga tctcctagaa taatttctag aactcagtat agcaacccca cttttgaggt 5400 ttctctaaca actacctctg gttctggaga agcctctttc actgaccaca tagttgtgga 5460 gggacattca ggaggccagc tcattggcga gcaaatacct ctgcgtgacc tttcctcaag 5520 gtcttttgac actactattc aggaagaaac tgcattcaca actagcacac caagggctga 5580 tgccccccct gacagaccac cacattatta taacagaaga ctgcagcaga ttaaagtaac 5640 agaccctgat tttattacta ggcccagagc ccttgttact tttgaaaacc caacatttga 5700 ggagtcagtt gatctcattt ttaaccagga tattgcagac ttagcccaag cagctccaaa 5760 tgaggatttt agagaccttg taactttaag cagaccctat tacagcagaa cagatctaca 5820 aggggtccgc gtgagccgat tcggtcaaaa agcaagcatt agaaccagaa gtggtctaac 5880 tataggaccc caaagccact attactatga cattagtgat gtagcccctg cagaaaatat 5940 tgagctaacc cctataggaa attttccact tggagagcaa tcaggagaag ctgtcatcac 6000 acttggcaca gatgattttg atgttgtcag cttagccgaa agtctccttg aaacttattc 6060 tgatgagttt ttacttgatg aaattgaatc tattgccaat gacctgcagc tagtcatagg 6120 aagcaggaga gaacagcaac cgatatcggt tccaaatctc attaagccaa gccctcaggt 6180 ctttccagac tttgaaggtg tgcatgtcaa atatccaagt gactcagata atccattaat 6240 ccctttgcat cctgaaagta caccagcaat cagttttgac atttatggtg atggtctcaa 6300 tttttatctg catccttctt tgctcagaaa aaaaaggcgc aaacggtatt tttattgatt 6360 tttgcagatg gctgtgtggc tccctgctca gaataagttt tatctacctc cgcaaccggc 6420 caccaaggtt ttgagcaccg atgagtatgt cacccggaca agtattttct atcatgctag 6480 cagcgaccgt ctactaactg tgggacatcc tctgtatgat atcatcaaaa aagacagaga 6540 taatgaaatt attgtgccta aagtatctcc taatcagtac agggttttta ggctgcaatt 6600 gcctgaccct aacaattttg cttttggaga taagtcacta tttgacccag aaagagaaag 6660 attggtctgg gcactgcgtg gcttagaaat agatagaggg cagccacttg gtgttagtgt 6720 aacaggcaac actacatttg ataggtatag tgatgttgaa aatccaaata aaaacccaac 6780 tgaccatgat aaagaaaata ctgaccccag agtaaacgtg gcattagatc caaagcaaac 6840 tcagctattt ttagtaggct gcaagcctgc aataggtgag cactggatac aagctcgttg 6900 gtgtgttggt caagcacatg aagatcagca atgcccacct atagaattaa aaaatacact 6960 aattcaggat ggtgacatgg ttgatatagg atttggtgca atggattttg caaacctgca 7020 gcagtacaaa tctggagtgc cattagatat agctaatggt gtttgtaaat atccagatta 7080 tataaaaatg gctaatgacc catatggtga cagttgcttc ttttatgtaa gaagagaaca 7140 gttgtatgca aggcacttat ttacaagatc tggttctgtt ggtaatgaag gggaggtaga 7200 aagagacatt gcttccaaac aggataagta cccaaccata aattattttg caacaccaag 7260 tgggtctctg gtttccacag aagcgcagct ttttaacaga ccatattgga tacaaagaag 7320 tcaaggacaa aacaatggaa tagcatggga aaatcaaata tttttaactg tagttgataa 7380 tactagaggc accccgttaa ctattacaat tggaaaaaat gatgcaggtg tgcagggtgc 7440 atataaggcc tcagattaca aaacctacct cagacatgtt gaagagttcg atatttcagt 7500 tattttgcaa ctatgcaagg tcaagcttac tcctgaaaac cttgcaacta tacatactat 7560 gaatcctgat attattgaag gatggcatct aaatatgaat cctcctacag gtgcttttga 7620 tgatagttac agatatattg actctttagc taccaaatgt ccaaaaaatg ttcctccaaa 7680 agaaaaggtt gacacatatg cagactacaa gttttgggtg gtggatttaa gagataaatt 7740 aactgaacag ctggatcaaa cttcattagg cagaaaattt ctctttcaaa caaatgtatt 7800 aagaaatgga ataaaaagac caaggcctgc tgcgtccagg ccacgtactg taaagaaaaa 7860 gcgcgcgaat aaataattgt ttgtttatta ataaagtcca ctaaagcctt agtaatgcct 7920 ggtttattta aattgtccaa tggaatgtcc tagcaaaaag accgcgcccg gtcctggcaa 7980 acaaacagca cttggccact tgccttggca ccagctgcaa actctttgcc aacttggcaa 8040 aaaaagatcc aaaaggatta aaggattaga gtcaaccgtt accgttcctg gctatactcc 8100 cagaacaaag accggaggcg ttcaaccgga taaggtatgt tctatacttg ttgtgtacaa 8160 ctacaatcac taagtaagtt tatacatgct cgaccgcttt cggtctggca gcagaggtaa 8220 tataaaaacc tacccatttt ga 8242 //