ID EU853709; SV 1; circular; genomic DNA; STD; VRL; 9205 BP. XX AC EU853709; XX DT 29-JUL-2008 (Rel. 96, Created) DT 29-JUL-2008 (Rel. 96, Last updated, Version 1) XX DE Cycad leaf necrosis virus, complete genome. XX KW . XX OS Cycad leaf necrosis virus OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus. XX RN [1] RP 1-9205 RA Lockhart B.E., Olszewski N.E., Swenson A.S.; RT "Characterization of Cycad leaf necrosis virus, the first badnavirus RT detected in a gymnosperm"; RL Unpublished. XX RN [2] RP 1-9205 RA Lockhart B.E., Olszewski N.E., Swenson A.S.; RT ; RL Submitted (26-JUN-2008) to the INSDC. RL Plant Pathology, University of Minnesota, 1991 Upper Burford Circle, St. RL Paul, MN 55108, USA XX FH Key Location/Qualifiers FH FT source 1..9205 FT /organism="Cycad leaf necrosis virus" FT /mol_type="genomic DNA" FT /country="USA" FT /isolation_source="cycad" FT /db_xref="taxon:549205" FT CDS 722..1249 FT /codon_start=1 FT /product="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:B5AK48" FT /protein_id="ACF60611.1" FT /translation="MSKSFWEAKFDEYKNSHSLRISDLTYLDLASLEKVLVRDLGHNLQ FT ILCHRSDLGNKVCLAATHVSCEKVINTLVDHNQKLQKDLKSLRSVVSQQQSSLESVQKS FT QVELGSELKGLRAVVLQNRPLTSGDIEELVLKISQQPKAIEQQTENLTVELTQKVQQIE FT HLIHRLEKTILG" FT CDS 1246..1632 FT /codon_start=1 FT /product="ORF2" FT /db_xref="UniProtKB/TrEMBL:B5AK49" FT /protein_id="ACF60612.1" FT /translation="MSLANSKSSQAYQDALAATATAWEGTSSGFSDKAETPSIASLSRQ FT LNTILFLTLRIDSNLSDLQNRVQVLDDRVRLVQNAREVYGTRAQIDSLAEQLAGLQINP FT TTVIKTTGTLKVHRNPFELLRRIR" FT CDS 1629..7379 FT /codon_start=1 FT /product="ORF3" FT /db_xref="GOA:B5AK50" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR013084" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="UniProtKB/TrEMBL:B5AK50" FT /protein_id="ACF60613.1" FT /translation="MSRSVGGASTSAQASGEPLVEDQVRDYRRGQRRRYEAQRVARNLQ FT NIGRTIVGARPREHTLALLMDPEAELTRSMQERARTVPAEVLYMTRRDDIHHRVYYHRS FT EERLLIIGNTQVDRTFIPQQSYEALSKEHMEYIHLGVIQVRLQILHRKFAGTLALISFR FT DTRWAGDDDRQLISVMEVDLSEGCQLIYVIPDMMLTLKDFYRHIQVSIQTKGYDTWTNG FT EANLLVTRSCTARLSNTPNVGFNYKTERVAEYLHSRGVQAINATQHNALKLRNTEWHLQ FT PSQATAPMQPQTVQTVGRYDGSLSLQFGNYTHAESSRPPVYTAHDEERDIDEESIAYLY FT SSDGEADDTDLEFLTQLDQVIPPVENVEGEEVSLFSLLDELDAEAAAAAAAAAVTEEPA FT VADPIIEEFLQALDSAEQELQVLIEDDRQRQAPARRAAHAEKRRRVEAAEQNRQNIEDF FT PDEEALMDLLRQPCTETLEHPRENDDVSLNLAVLEEDNKDELYDYPTAIRNLENLFSSE FT VTGSYSPPDTDMVGQTGYAPATSTQGWVGSHKFEGSTSKARFKWKDPSEMFTLPSAYQV FT EGAIFVMPPDYDPKVFSRWESITLNHMAPKAFANATDKITYIENLLGENEKITFQTWRM FT SYEQEYEALKTQAVGENGTQNVLSHIRKIFFLEDPKQGTTSSQDAAYRSLKSLTCMEMT FT GTAIRRYMASYFDLAAKSGRMWSSEELSKEFFQKLPGRLGERVEQAFNAKFQGNTIGVV FT PRITFTQRYLTEICEEASYQRSLKNLNFCSSFPIPNYQKGAGRKFGLRKSKSYKGKPHK FT THVRIEKSKYLRSKKCKCYACGEEGHFAKDCKNPRKLTERVAILEDLDLGDDYDVVSVG FT LDEGDQSDIYSVSEGEEGHSDLHDETIFSLTEEDDEAALLVGKAGTWRPQMKVSKKEFS FT CEHEWDYEVSGELKCRCCFLPTRSKDRIHCKKCKITVCNMCSEFCYNIKIVRELPSSSL FT LKDRKKVDYIGVCIEVLEENKKLRTEKEVLIQDLNSALEQLKNTKGKEIIVEEESPELL FT ARISYLEQRELFMQELYEKEKFEKDLLQAQMRSMAAEMERLQQQVSQLEEQIAQKAESV FT GMLMEENEQVFSASQALQPKGQYNGLYNLQIEICCDSWTAFLVNAILDTGATTSCIRTG FT KAPRETVEDSKTQAVLKGVNSVSIGTKSLRPGLMKIQGGTYRIPKTYVIDIQLSEGIDM FT ILGCNFIRAMEGGLRIEGDTLSFYKLLTTVQTSRHAQQIAAIQELELDEIEYQNLGALD FT DQAFFNKKFMEQNRALMERLKKIGIIGEDPLKFWERNKVKCKLDIINPNLTIEDKPLKH FT VTPAMKEQMRKHIDKLLELKVIRPSKSRHRTTAMIVQSGTEMVLQKDKNGKEKMVEKRG FT KERLVFNYKRLNDNTEKDQYSLPGINTIIQRIGRSKIYSKFDLKSGFHQVAMDPASIEW FT TAFWAIDGLYEWLVMPFGLKNAPATFQRKMDMCFAGTEHFIAVYIDDILVFSETEEDHV FT KHLHQMLHICEKEGLVLSPTKMKIGATSIDFLGATIGRSKIRLQPHIIKKITEAKEEEL FT QTTKGLRAWLGILNYARSYIPNLGKTLGPLYSKVSPTGEKRMNHQDWALVKKVKDSVQN FT LPDMELPPKQCCIVIETDGCMDGWGGVCKWKLTRHDSKTTEKTCAYASGKFSPVKSTID FT AEIQAVICSLDKFKIFYLDKQEVVIRTDCQAIISFFDKTSQNKPSRVRWLTFTDFITGI FT GIPVRFEHISGKDNLLADTLSRLVLCMVQGWTHDGIKAITPAITAIKDDSDSARVAAII FT MKVLPQERIFHLTEVEGPALKCACNKEVLIKTSHTWRNPDRKFCVCPDGRCHIWYWWDL FT LEDYVQQRVTAAQLAECKNFRQQLDNIKRQLDSDKRNRAHSI" XX SQ Sequence 9205 BP; 2779 A; 2036 C; 2120 G; 2270 T; 0 other; tggtatcaga gcttggtttg tgtaatattt ttcatgttgt aaattcatgt tttgtttatc 60 ttatatcatg agtttctaag tttttaatag gggccaaagg gctctgcctt aacttcaact 120 tgaaatgatc ttattgttat atttttgata attctgttct gatgtttctt ggaagaacta 180 acgattaaag aactgtttaa gtctaaaacg aaccctggac agatgtatag tgtttaggac 240 ttaggacaaa gcctgaagac ccgaatgaag cttgtaacca acgggagcct gaagttatct 300 gtaggattct gagagaaaaa gctttccgaa gctttcctga agctctcagg caaaaggccg 360 aagagcccgt taggcgagga ggccgtgaag ggcgttaagt aggctgagcc agaggagtgc 420 ctaaggaaga ctgcctagga agattgccgc tcaaagagtt tgaaagataa tcaaggcaaa 480 cagaggtgaa aagctgagta aggatcgaca gaaggagttt taagttcaac tcactatata 540 aacgaaaagg gtctgtagaa gatgaaaatg gaactaagat tgtaagttct gctaataaac 600 attgtaactt cattatccat gatctaacag tcaagattaa ggtagagaag aagttttggt 660 atccctgcgg atcccctatt ttgtctaaaa tcgtttcttc acatttcata ttttgttgtt 720 tatgtcaaaa tctttctggg aagctaagtt tgacgaatat aaaaattctc atagtcttcg 780 tatttctgat ttaacttatc ttgatcttgc atctttagaa aaggttttag tccgagacct 840 tggtcacaat ttacaaattt tgtgtcatag aagtgattta ggaaacaagg tttgtttagc 900 tgccacccac gtgtcgtgtg aaaaggtcat aaatactctt gtagatcata atcaaaaact 960 ccaaaaagat ttgaagtctt taaggtctgt tgtgtcccaa cagcaatcta gtttagagtc 1020 tgtacaaaag tctcaggtag aattaggttc agaattgaaa ggtttgagag cagtggttct 1080 gcaaaacaga ccactcacat ctggtgatat agaggagttg gtcctaaaaa ttagccaaca 1140 gcctaaagca attgaacagc agactgagaa tctaacggtt gaactcactc agaaggtgca 1200 acagatcgag cacctaatac atcgtctgga aaagacgata ctgggatgag cttggctaac 1260 agtaaaagca gtcaagcata tcaagacgct ttagcagcaa cagcaacagc ttgggaaggg 1320 acttcatcag gtttctcaga taaagcagag accccaagca tcgcttctct atccagacaa 1380 ctcaatacca ttctcttcct aactcttagg attgacagta atcttagcga tctgcagaat 1440 agagttcaag ttttggacga cagggttaga cttgtccaga acgcccgtga agtatacggg 1500 actagagcac agatagactc attagcagag cagttagcag gtttgcagat taaccccacc 1560 actgtaatta aaaccacagg tacgttgaaa gttcatagga atccttttga attactccga 1620 aggataagat gagtcgatca gttggaggag catcgacttc agcacaggct tcaggtgaac 1680 ccctggtaga ggatcaagtt cgagattaca gaaggggaca gcgcagaagg tacgaagcac 1740 agcgagtggc cagaaacttg caaaacattg gccgcacaat tgttggagca agacctaggg 1800 aacataccct agccctgttg atggacccag aagcagaact cacccggtcc atgcaagaac 1860 gtgccagaac agtacctgca gaggtacttt acatgaccag gagggatgat atacaccaca 1920 gagtgtacta tcacagatcg gaagaacgat tgcttatcat tggcaatact caggtcgaca 1980 ggaccttcat ccctcagcaa tcttacgaag ccttaagtaa agaacatatg gagtatattc 2040 atttaggtgt catacaagtt agattacaga ttttacatag aaagtttgca ggcactttag 2100 ccctaattag ttttagagat acaagatggg ctggagatga tgatagacag ctcatttctg 2160 ttatggaagt ggatctctct gaaggatgcc aattaattta tgtaattcct gatatgatgt 2220 tgactttaaa agatttctac agacacatcc aggtcagcat acagactaag ggctatgaca 2280 cttggacgaa tggagaagca aatctcctag ttacaaggag ttgtactgca cgactatcca 2340 acactccaaa tgttggattc aattataaaa ctgagagagt agctgagtat ctgcattcta 2400 gaggcgtcca ggccatcaac gccactcagc ataatgccct taagctcagg aatactgaat 2460 ggcacttgca gccatcacag gcaactgccc cgatgcagcc ccagaccgtc caaacagttg 2520 gacgctacga tggttccctt agtttacaat ttgggaacta tacacatgct gaatctagta 2580 ggcccccggt ctacactgct catgatgagg agcgcgatat tgacgaggaa tccatcgcat 2640 atttgtattc cagcgatggc gaagctgatg atactgacct tgagttttta acgcagcttg 2700 atcaggtgat tccacctgtt gaaaacgtgg agggagaaga ggtcagtctt ttctcgcttt 2760 tagatgaact ggatgccgaa gcagcagctg cagccgcagc cgccgcagtc accgaagaac 2820 ctgctgtagc agacccaata attgaagagt tcttgcaggc acttgactct gcagaacaag 2880 aattgcaggt tttgatcgaa gacgacagac aaagacaggc accagcaaga agagcagccc 2940 atgctgagaa aagaagaaga gtagaagcag ccgagcaaaa tcggcaaaac attgaagact 3000 tccctgatga ggaagcattg atggatcttc ttaggcagcc ctgtactgaa actttggaac 3060 atcctagaga gaatgatgat gtaagtttga atttggctgt ccttgaagag gataataaag 3120 atgaacttta tgactacccc actgcaatta ggaacttgga gaatttgttc agcagtgaag 3180 taacaggaag ctatagccct ccagacacag atatggttgg tcagacagga tatgctcctg 3240 cgaccagcac acagggatgg gttggctcac ataaatttga aggttccacc tccaaggctc 3300 gattcaaatg gaaggatcca agtgaaatgt tcacccttcc ctcagcctac caagttgaag 3360 gggcaatttt tgttatgccc ccagactatg atcctaaggt gttctcaagg tgggagagca 3420 tcactctcaa ccatatggcg ccgaaggcat ttgccaatgc cactgataaa atcacttaca 3480 tagaaaatct tcttggtgaa aacgagaaga ttacatttca aacttggcgc atgagctacg 3540 agcaagagta tgaagcgctg aagacgcaag ccgtgggaga aaacgggaca cagaacgtcc 3600 tgtcacatat tcggaagatc ttctttctgg aagatccaaa gcaggggacg acatcaagtc 3660 aagacgcagc ctaccgcagc ctcaaaagcc tcacttgcat ggaaatgact ggcactgcta 3720 ttcgcagata tatggctagt tatttcgact tggccgcaaa atcaggaaga atgtggtcat 3780 cagaggaatt gtcaaaggaa ttcttccaaa agttgcctgg cagattaggc gagcgagtgg 3840 agcaggcctt taatgcaaaa ttccagggta acaccattgg tgttgttcct cggattactt 3900 ttacccagcg gtatctaaca gaaatatgtg aggaagcctc ctaccagagg tccctcaaaa 3960 atttgaattt ttgcagcagt ttccccattc cgaattatca gaagggcgct ggaagaaaat 4020 ttggtctccg caaaagcaaa agctacaaag gtaagccgca caaaactcat gtgcgcattg 4080 aaaagagtaa atacttaaga tccaagaagt gtaaatgcta tgcgtgtggc gaggaaggcc 4140 atttcgcgaa agattgtaaa aatcctcgaa agctgaccga acgagttgcc attctggagg 4200 atctggatct tggagacgac tatgatgtgg tgtcagtagg acttgatgaa ggtgatcaat 4260 ctgacatcta cagcgtttca gaaggtgagg aaggtcattc agaccttcat gatgaaacta 4320 ttttttcact aacagaggaa gatgatgaag cagccttact tgttggaaag gcaggaacct 4380 ggaggcctca aatgaaggta tccaagaaag agttttcctg tgaacatgag tgggactatg 4440 aagtctcagg agaattaaaa tgcaggtgtt gtttcctccc gaccagaagc aaagatagga 4500 ttcactgtaa aaagtgtaag ataactgtat gtaacatgtg ctctgaattt tgttacaaca 4560 ttaaaatagt tagagagttg cctagttcta gcctgttaaa agataggaag aaagtagatt 4620 atataggtgt ttgcatagaa gttctggaag agaacaaaaa gttgcgaact gaaaaagaag 4680 tgctgattca agatttaaat tcagccctag aacagttgaa aaatacaaag ggcaaagaaa 4740 tcattgttga agaggagtcg cctgagctct tagctaggat cagttacctt gaacaaaggg 4800 aactgttcat gcaggagctg tacgaaaagg aaaaatttga gaaagacttg ctgcaagcac 4860 aaatgcgcag catggcagca gagatggagc ggctacagca acaggtttca cagcttgagg 4920 agcagatcgc acaaaaggca gaaagcgtcg gcatgctgat ggaagaaaat gaacaagtat 4980 tctcagcatc acaggcattg caaccaaaag gccaatataa tggcctgtac aatttacaga 5040 tagaaatttg ttgtgattca tggacagcat ttcttgtaaa tgccattctt gatacaggtg 5100 ctacaacttc ctgcattcga acaggaaagg cacccagaga aacagtagaa gactccaaaa 5160 cgcaggcagt acttaaggga gtaaattctg tctccattgg gaccaaatcc ctcagacctg 5220 gtctcatgaa gatacaagga ggtacctata gaatcccaaa aacatatgtc atcgacatac 5280 agctgagcga gggtattgat atgatccttg gctgcaattt tatccgcgcc atggaaggag 5340 gattacgcat agaaggtgat accctgagtt tttacaaact cctcaccact gtgcagacca 5400 gcaggcacgc ccagcagata gcagcgatcc aagaattgga gctcgatgaa attgaatatc 5460 aaaatctggg agccctcgat gatcaggcct ttttcaacaa aaaattcatg gagcagaacc 5520 gcgcgttaat ggagcgactg aagaaaatag ggattatcgg cgaagatccc ttaaagtttt 5580 gggaacgcaa caaggtaaaa tgcaagttgg acatcataaa tcccaacttg acaatagagg 5640 acaagcctct gaagcatgtc actccagcaa tgaaggaaca gatgcgtaag catattgata 5700 agttactgga gttgaaggtc attcggcctt ccaagagccg gcaccgaacg actgcaatga 5760 ttgtgcagtc cggtacggaa atggtccttc agaaggacaa aaatggtaag gaaaaaatgg 5820 tagaaaagag ggggaaagaa cggttagtct tcaactataa acggttgaat gacaacacag 5880 agaaagatca gtattctctc ccaggcataa ataccattat acagaggata ggtagatcca 5940 aaatatactc aaagtttgat ttgaaaagtg ggttccatca agtcgcaatg gacccagcct 6000 ctatcgagtg gactgccttt tgggccattg acggcctata cgaatggttg gtgatgcctt 6060 tcggcctcaa aaacgcacca gccacgtttc aaagaaagat ggacatgtgt tttgcaggaa 6120 ctgagcactt tatcgccgtg tacatcgacg atatcctcgt cttctcagag acagaagagg 6180 atcatgtgaa gcatctccat cagatgctcc acatttgtga aaaggaaggg cttgtcctaa 6240 gcccaacaaa gatgaaaata ggggctacct ctattgattt ccttggagcc acgattggca 6300 ggtcaaagat aaggctccag ccccatatta taaagaaaat cacagaagca aaagaggagg 6360 agctccagac aacgaaagga ttgagagctt ggctaggaat tctcaattat gcaaggagct 6420 atatccctaa tttaggtaag acacttgggc cattgtactc aaaggtttct ccaactggag 6480 aaaaacggat gaatcaccaa gactgggccc tcgtgaagaa ggtaaaagat tccgtgcaga 6540 acctccctga catggaatta cctcccaagc aatgctgcat cgtcattgag actgacggtt 6600 gcatggacgg atggggaggc gtttgtaaat ggaagctgac aaggcacgac agcaaaacca 6660 cagaaaagac atgtgcttac gccagcggca agttctcacc ggtcaaatcg accattgatg 6720 ccgaaatcca ggctgtcatc tgcagccttg ataaattcaa gatattttat cttgataagc 6780 aggaggtcgt catcagaacc gactgtcaag ccataatctc gttctttgac aagacatctc 6840 agaacaagcc atcccgagta cgttggttga ccttcacgga tttcattacc ggcatcggca 6900 ttccagtaag attcgagcat atcagtggga aggataatct gctagctgac acactctccc 6960 gactggtgct ctgcatggtc caaggatgga cccacgatgg catcaaagcc atcaccccag 7020 caatcacagc aataaaagac gacagcgaca gcgcacgcgt tgccgccata ataatgaagg 7080 tgctcccaca agaacgcatc ttccatttga cggaagttga ggggccagcc ctcaagtgcg 7140 catgcaataa agaggtcttg attaagacct cccacacttg gagaaatccc gaccgaaaat 7200 tctgtgtctg cccagatggc agatgccaca tctggtattg gtgggatctc ctcgaagatt 7260 acgtccaaca gcgagtcacc gcagcccagc tcgcagagtg caagaatttc cgacagcaac 7320 tggacaacat caaaaggcag ttggacagtg acaaaagaaa ccgggcccac agcatatgaa 7380 ggaagcgtgc tgagcccata aataaaggcc ccttggccac ttgtaaaaat tgtaaaaaga 7440 tgtaaatact caggcatgac gtcacccctg acgtcaccat gacatcaccc gcataaagaa 7500 gggaaatctg tccctctcag gcatgacgtc accatgacgt cacccctgac gtcaccatga 7560 catcacccgc ataaagaagg gaaatctgtc cctctcaggc atgacgtcac ccctgacgtc 7620 accatgacat caccccgcat aaagaaggga aatctgtccc tctcaggcat gacgtcaccc 7680 ctgacgtcac catgacatca tcaccccgcg tgaagaaggg aatctatccc tctcaggcat 7740 gacgtcaccc ctgacgtcac tccacactcg caataaggca aaggaatctg tcaccatcga 7800 cagcgacagc ctcaataacg acagggaatc gcatccacgt atgtgtcagt gggcgtccct 7860 ctcagtcaca tcccgtagta ggcatagaat ctgtcatagt caggtcccac tagtcgagtc 7920 gtgaaagtca cgatcaaaga gaatctccgg atgacaggtc ggtgtgactt acaccgcgaa 7980 aggagtggtt tgaccctcta cctggcatgt ggacccttct cggcgattat gaccgccact 8040 ttaggtcaca tccgcccgta ggtcccccaa ggtcggtggg aatctgtccc cacctatcca 8100 tgtcgaacgg aaccctgcgt ggtacccgtg cgtcagtcac atcagtcaca tcgcactaag 8160 tcccagtgcg tgtccccatc aggcatcccg cgtcttccaa gatgccttcc agtcgtaatc 8220 ccgcgtgcac cgcccacggg attccctttc cgtcacgtcg atagcgacga gatgctcttc 8280 ccgtctcgat cagagcatct tcgcccgtcg agacccttcc aacgtctcga tcgtgcgtta 8340 gtggggaatc caccgcccca cgacggaact ttatgtccca tccgggtcag catccaccgc 8400 ctcacggaga tgccctcggg agccctcgag ctcattattg agcatcgagt ccagagtgga 8460 gtagtccgcc cacgccgagt ccgacgccga gtccgccgcc gagtccgcca gttagtccgc 8520 cagtccggtc cgccagtccg gtccgccagt ccgcccgtgc cagtccggca cctgttatgc 8580 ccagtccggc atatgtaaga ctctcattct tattctaatt ctaattccac gtatttcttt 8640 tgtgagtcga ttctaatgat ctatttttat aagtgccgtt tcttaatcag tttcatacta 8700 tgtatctatt tcgttctgtc atgtgtatct gttatttcct ttaatcttta atttgttatg 8760 tttttcttat tgcccctttt caccccgtga ataaaatacg ggtttttcat ttcagttatt 8820 tttcatttta gttatctgca tttcatacag aaggtgtgct aaggaacccc aaggtataca 8880 gtctcccata aagagctgaa tatacccgtg ggcaccagcc ttcttgcatt tgcatatagt 8940 atctagtcat tcaaggtcgt agccttcgag gcttgataaa ctgagcaatt gcgctcaacc 9000 ttgaacgatt atagtaagcg tgtatgaatt tgtatatcat cagttatggt ttgttcactc 9060 ttctcagttt tcttatgttc tgttttatcg taattactct gattcgtata atgtttcaat 9120 cttatgtttt aaattaatat tacaccgtgt acctttcact actttgtgtt tttgattgag 9180 tacaagatcc gttttaattt ctctc 9205 //