ID EU493091; SV 1; circular; genomic DNA; STD; VRL; 6953 BP. XX AC EU493091; XX DT 08-NOV-2008 (Rel. 97, Created) DT 27-FEB-2009 (Rel. 100, Last updated, Version 2) XX DE Chelonia mydas papillomavirus 1, complete genome. XX KW . XX OS Chelonia mydas papillomavirus 1 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; OC Dyozetapapillomavirus. XX RN [1] RP 1-6953 RX DOI; 10.1016/j.virol.2008.09.022. RX PUBMED; 18973915. RA Herbst L.H., Lenz J., Van Doorslaer K., Chen Z., Stacy B.A., RA Wellehan J.F.Jr., Manire C.A., Burk R.D.; RT "Genomic characterization of two novel reptilian papillomaviruses, Chelonia RT mydas papillomavirus 1 and Caretta caretta papillomavirus 1"; RL Virology 383(1):131-135(2009). XX RN [2] RP 1-6953 RA Herbst L.H., Lenz J., Van Doorslaer K., Chen Z., Stacy B.A., RA Wellehan J.F.X.Jr., Manire C.A., Burk R.D.; RT ; RL Submitted (14-FEB-2008) to the INSDC. RL Pathology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, RL Bronx, NY 10461, USA XX FH Key Location/Qualifiers FH FT source 1..6953 FT /organism="Chelonia mydas papillomavirus 1" FT /host="Chelonia mydas" FT /mol_type="genomic DNA" FT /country="USA" FT /db_xref="taxon:485242" FT gene 1..258 FT /gene="E6" FT CDS 1..258 FT /codon_start=1 FT /gene="E6" FT /product="E6" FT /db_xref="UniProtKB/TrEMBL:B6RUP1" FT /protein_id="ACD39805.1" FT /translation="MPPRSVSPLLKAIQRFPKLLLLCHKLRVTIFELKIACLYCRKSLD FT EIEIVQLLEEGAPFGISRGVKGPRRCYAACAKCRLFVDNA" FT gene 251..577 FT /gene="E7" FT CDS 251..577 FT /codon_start=1 FT /gene="E7" FT /product="E7" FT /db_xref="UniProtKB/TrEMBL:B6RUP2" FT /protein_id="ACD39806.1" FT /translation="MHDKLQPQKGCLSRYICACCRQEVDFAQQEVCVMLSDQLGMLVCR FT SCEQSLLPHELSDAISHACMTEVSVSAGFDLHSDDSDLASYSDISDWDSEESPDTDTDF FT SGSH" FT gene 580..2259 FT /gene="E1" FT CDS 580..2259 FT /codon_start=1 FT /gene="E1" FT /product="replication protein" FT /db_xref="GOA:B6RUP3" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014015" FT /db_xref="UniProtKB/TrEMBL:B6RUP3" FT /protein_id="ACD39807.1" FT /translation="MAENGPSGTYDELFAESASLCDSGDEGPSHSTTLQEAEGWNGGAS FT GKRRLPSTPSSTQDAGEELSPHMDSLNIGSVTKITKKCRRKLEMTIDSGFEASTCEVES FT SLSCTFEKRNQRIKQLGVFKESFMVSFSDIARQFKSNKTQSSTWVFAIFDYCSDISLLH FT NALQQTCTSILTDHNPTYRTYVFLCEFSGKKSRDSLLGLLKPFGILADDVHLCEPPNTR FT SVPAAVFFTKIQRLHGSLPLWIQQLTSIGDVTADHFKLVEMVQWAYDNNYTDESRIAYE FT YAKMATEDNNAKAWLKHNSQAKYVKDCAVMVRLYKKGEVQAMSLAELIVDRCEHHTDYD FT PDGWKNILLMLRFQNIALADFLQALRNCLHCVPKKCCIAFVGVPDSGKSMLCMSLIEFL FT EGRVLSFSNARSHFWLQPLGECKIALIDDATRPCWDYIETYLRNALDGNPVCIDAKYKA FT PVQIRCPPILITSNVDIRQGDQINGVLQESTYKYLLNRICVFPFDRPIPIREGRLRFAV FT KTSDWKSFFLTYSAALGFDLTDYDDGCEPATDGSAEHSVVNN" FT gene 2201..3442 FT /gene="E2" FT CDS 2201..3442 FT /codon_start=1 FT /gene="E2" FT /product="regulatory protein" FT /db_xref="GOA:B6RUP4" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:B6RUP4" FT /protein_id="ACD39808.1" FT /translation="MMDANQRLMEVQNIQLSIIEQDSHTLGSILEFYKAMKVEYLLLAA FT ARKKGRLHIGVQRVPPMQVSETKYREASTMIVLIESLMQSQFRDRKFSLHELQYSLVMT FT PPEYTVKQGPKQVYITYSDPSQTTEQFTKWKTILYQTDDWSERPSLPGTHDPKWFLAHT FT LTDKNGLFIVDKSGDKDYYAFFSTKEPSSAVARGQWTISSTVPAAAALSRQPSPRRSNS FT PNLDPCTRSRGSHCGGVSPSNPDTPDTAGVRPRDRTGGLGTPPKSARGGGGRGQSTGGS FT KLQRGPRVTPRSSRQSKEKNPVSPAEVGQNRKTVSGPGTRLDRLIREARDPPGVIIEGS FT TSQIKHLRRRIQLGPLKYLRVTSTWHWIVNKKVQKPCKMIVVFSNNAERQTFLHLFRVE FT GDGISVRLCSFNGL" FT gene 2745..3176 FT /gene="E4" FT CDS 2745..3176 FT /codon_start=1 FT /gene="E4" FT /product="putative E4 protein" FT /db_xref="UniProtKB/TrEMBL:B6RUP5" FT /protein_id="ACD39809.1" FT /translation="MPFSVPKSPAAQSPGDSGQSHPPYQQPPPYPGSPRPADRTPRTST FT PAHAPGVPTVEESPPATPTPPTPPVSDPETEPADSGHPLSPPGVGEDGDSPQEVPSSSG FT APESPPGPQDSLKKKIQSLQQRLDKIEKQCQDLERDLTG" FT gene 3442..4833 FT /gene="L2" FT CDS 3442..4833 FT /codon_start=1 FT /gene="L2" FT /product="L2 capsid protein" FT /db_xref="GOA:B6RUP6" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:B6RUP6" FT /protein_id="ACD39810.1" FT /translation="MKRRYPRASAEDIWRHCRQYGDCPDDVQKKFTGNTIADNILKWAS FT SVLFFGGLGIGTAEGAASAADRLLPTGGGFGTPQERPFETTVTRLPDSNATPGTSVTAI FT EPAVVLDSGSVVRGADPVNPTNAAPPRVHGGINETEVFPPPTTIETPVWRNPFENATEY FT PTRNVGAVDSTTTNEIELGVVGPAARDLGNAVEETEFFSTFDIEEPTTSTPIGTGRWTW FT SASARFQRAAAREVPLPVLTSSGRVVQFENPAFDFSEAVDDFSRSIQFDDASRLPIARL FT SGPRFYLQQTGRIGVQRVGELWGNILRSGRQLLAPRVYYAELSSIFTSPDTLEMEPLYI FT STDAEAADVDAVPAEVDVAPGTADTSMPGTSPGVFPTAARAVVYNGLVVGTVPVDVSIK FT ARAGGFIPMPHDFDGSPLIPLFPSFDKVHPAYSVTFSMLSELDDPFLTKKRKKCFADGC FT LDTFY" FT gene 4808..6301 FT /gene="L1" FT CDS 4808..6301 FT /codon_start=1 FT /gene="L1" FT /product="L1 capsid protein" FT /db_xref="GOA:B6RUP7" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:B6RUP7" FT /protein_id="ACD39811.1" FT /translation="MAVWTPSTSALFVPPVNVPALYSTKEFVQRTSYVFHGTTERLLTI FT GNPYFPLIDRDVVIVPKVSAYQYRVFRIKLPDPNKFPIPESARGDKDSTRLVWAVQGIQ FT VNKSQPLGVGPSGNTMSSGTLDYADSHHPGNEKPPPPDDRRINSASDSKQSQVLIVGCI FT PPMGQHWDASIRCTEDNDKEMCPPLELKHTVIEDGDMVDMGLGTLNFSTLCSNKSTLPL FT ELINSISKYPDWLTMNADPFGNHCFFMLRREQVYLKSVGMQYGNVGEDEPTDYHIKGGT FT GTLWQTPGRHSWFPLVSGSLATSDNQLYNRPYWIENSTAPNDGICWHNQLFVTCADTTR FT NTIFNISTLKKNVPATSDYKESNFTNYSRHVEEYEISFILRLCMVNMDLPVLNHLHNMD FT PMLLEDWGFGTTPPPNLTVEDQYRFLQSKATKCPPTPATPPDADKWAKYKFWDVDCTEQ FT ISSDLSPFPLGRRFLQLYPKAATATRTLSSSSRKRRRGR" XX SQ Sequence 6953 BP; 1861 A; 1621 C; 1660 G; 1811 T; 0 other; atgcctcctc gctctgtttc ccctttgctt aaagctatac agcgctttcc taaattgttg 60 cttttgtgtc acaagcttcg ggtaactatt tttgaactaa agattgcctg cctgtattgt 120 cgcaaaagct tagacgaaat agaaatagtg caactacttg aagaaggcgc cccttttggt 180 atttcaagag gtgtgaaagg gccacgtcgc tgctacgctg cctgcgctaa atgtcgcttg 240 tttgtggaca atgcatgata aactgcaacc tcaaaaaggc tgcctaagtc gatacatttg 300 tgcctgttgt aggcaagagg ttgactttgc gcaacaggag gtatgtgtta tgcttagcga 360 ccagttggga atgctggtgt gcaggtcatg cgaacagtcg ctgcttcctc atgaactgtc 420 agatgctatc tctcatgcat gcatgaccga ggtgtctgta agtgccggct ttgatttgca 480 ttcggacgat agtgaccttg catcttacag cgatataagc gactgggaca gtgaggagag 540 tccggatacc gatactgatt tcagcggatc gcattaacaa tggctgaaaa cggaccttca 600 ggtacttacg atgagttgtt tgcggagagt gcttcattgt gcgacagcgg ggatgaagga 660 ccctcacata gcacaacatt gcaagaggct gaggggtgga atgggggtgc aagtggaaaa 720 cggcgccttc caagtacgcc tagtagcacc caagatgcag gagaagagct gagtccacac 780 atggactcat tgaacatagg gtctgttaca aaaattacca aaaaatgcag acgtaagcta 840 gagatgacaa tagatagcgg ttttgaggca agtacatgcg aggtggagtc tagtcttagt 900 tgcacttttg aaaaaagaaa ccagcgcata aaacagttag gtgtatttaa ggaatcattt 960 atggtttcat tctctgacat tgctaggcaa ttcaaaagta acaaaaccca aagttctact 1020 tgggtgtttg ctatatttga ttattgctct gatattagct tgctgcataa tgcactgcaa 1080 caaacatgca catcaattct tacagaccac aatcccacat atagaactta tgtgttcctc 1140 tgtgagttct caggaaaaaa gtcgcgagat tcattgctag gcttgctaaa gccatttggt 1200 atattagccg atgatgtcca cttatgcgag ccaccaaaca cgcgtagtgt gccagcagct 1260 gtgtttttta ccaaaataca gcggcttcat gggtcgctac ctctgtggat tcagcagcta 1320 acatctatag gggatgttac agctgatcac tttaagctag tagaaatggt ccaatgggca 1380 tatgataata attatacaga tgaaagtcgc atagcatatg agtatgcaaa aatggcaact 1440 gaagacaata atgcaaaggc atggcttaaa cacaatagcc aagcaaaata tgtgaaggat 1500 tgtgcagtta tggtgcggct gtataaaaaa ggcgaagtgc aagccatgtc tcttgctgag 1560 ctcattgttg accgctgtga gcaccacaca gattatgacc cagatggatg gaaaaacatc 1620 cttttgatgc taaggttcca aaacatagcg cttgcagatt ttctgcaggc actgcgtaat 1680 tgcttgcact gcgtaccaaa aaaatgttgc attgcgtttg ttggggtccc agatagcggt 1740 aaaagcatgc tttgcatgtc attgatagag tttttagaag ggcgagttct aagttttagt 1800 aacgcacgca gccacttttg gctgcagccg ctaggtgaat gcaaaatagc actgatagat 1860 gatgctaccc gcccttgctg ggactacatt gaaacgtatt taagaaatgc gctggatggc 1920 aatccagtgt gcatagatgc aaaatataaa gcaccagtcc agatccgctg tcccccaata 1980 ttgataacca gtaatgttga cattaggcaa ggcgatcaaa ttaatggagt gctgcaagag 2040 tcaacttaca aatatttgtt aaataggatt tgtgtctttc cttttgacag gccaattcca 2100 ataagagaag ggaggttaag atttgctgtt aaaacctccg actggaaatc tttttttctt 2160 acttattccg ctgcgctggg gttcgattta acagattacg atgatggatg cgaaccagcg 2220 actgatggaa gtgcagaaca ttcagttgtc aataattgag caggacagcc acacattagg 2280 ctcaattctt gagttctata aggccatgaa agttgaatac ttgcttctcg cggccgcgcg 2340 taaaaaagga cggttgcaca taggggtgca gcgcgtaccc ccaatgcaag tgtccgaaac 2400 aaaatacaga gaagcatcta ccatgatagt gttaatcgag tcattaatgc aatcgcaatt 2460 cagggacaga aagttctcat tgcatgagct tcaatatagc cttgtaatga cgccgccaga 2520 atacactgtt aagcagggcc caaaacaggt gtatattacg tacagcgacc caagccaaac 2580 cacagaacaa tttaccaaat ggaagaccat cctgtatcag accgatgatt ggagtgaacg 2640 cccctcgctg ccaggcaccc acgaccccaa gtggtttctc gcgcacacac tgacagacaa 2700 aaacggactt ttcattgttg ataaatccgg tgacaaagac tattatgcct ttttcagtac 2760 caaagagccc agcagcgcag tcgccagggg acagtggaca atctcatcca ccgtaccagc 2820 agccgccgcc ttatccaggc agccctcgcc ccgccgatcg aactccccga acctcgaccc 2880 ctgcacacgc tccaggggtt cccactgtgg aggagtctcc cccagcaacc ccgacacccc 2940 cgacaccgcc ggtgtcagac cccgagacag aaccggcgga ctcgggacac cccctaagtc 3000 cgccaggggt gggggaggac ggggacagtc cacaggaggt tccaagctcc agcggggccc 3060 cagagtcacc cccaggtcct caagacagtc taaagaaaaa aatccagtct ctccagcaga 3120 ggttggacaa aatagaaaaa cagtgtcagg acctggaacg agacttgacc ggctaattcg 3180 ggaagctcgt gacccaccag gcgttattat tgaagggtca actagccaaa tcaaacatct 3240 taggcggcgc attcagttag gcccattgaa atatttgcgt gtgacttcga catggcattg 3300 gatagtgaac aaaaaggttc agaagccctg taagatgatt gttgttttta gcaataacgc 3360 tgaaaggcag acgttcctgc atttattcag ggttgagggc gatgggatat cagttaggct 3420 ttgctcattt aatggcttat aatgaaacga aggtatccaa gagccagtgc tgaggacata 3480 tggcggcatt gcaggcaata cggcgattgt ccagatgatg tgcagaaaaa atttacaggg 3540 aatactattg ctgacaatat tttaaaatgg gcttcttctg ttctcttttt cggtggcttg 3600 ggaattggga ccgcggaggg ggctgcttct gctgctgacc gcttgcttcc cactggtggc 3660 gggtttggta ctccacagga acggcccttt gagactactg tcacgcgctt gccagacagc 3720 aatgccaccc ctggcacgtc agtaactgct atcgaaccag cggtggtatt ggactccggc 3780 agcgtagtgc gcggcgcaga ccccgtaaat cccacaaacg cggccccgcc gcgcgtacat 3840 ggaggtatta atgaaacaga ggtctttcct cctccgacaa ctattgagac ccctgtttgg 3900 cgaaaccctt ttgagaatgc aacagagtat cccacccgaa atgtcggggc ggtcgattca 3960 accacaacca atgaaattga acttggtgtg gttggaccgg ctgctcgaga tttggggaat 4020 gctgtggagg aaactgaatt tttctctact tttgatattg aagaacccac aaccagcacc 4080 cctataggca ctgggcgttg gacttggtct gcatccgcgc gctttcaaag ggcggctgca 4140 cgcgaagttc ctcttcctgt cctaactagc agcggccgag tagtccagtt tgaaaatccc 4200 gcgtttgact ttagcgaggc ggtggatgac ttttcccgct caattcaatt tgatgatgca 4260 agccgcctgc ccattgcacg tctatctggc cctcgttttt atctgcagca aacagggagg 4320 ataggcgtgc aaagggtggg cgagttatgg ggcaacatac ttaggagcgg gcgacagctt 4380 ttggccccca gagtatatta tgctgaactg tcctctatat tcacaagtcc cgatacattg 4440 gaaatggaac cattatacat ttcaactgac gccgaggcgg ccgatgttga tgctgttcct 4500 gcagaggtgg atgtagcacc agggacagcg gatactagca tgcccgggac ttcccccggt 4560 gtgtttccta ctgctgcgcg tgccgttgtt tacaatggcc tagttgtagg gactgtcccg 4620 gttgatgtct caatcaaagc gcgtgccggc gggtttattc ctatgccgca cgactttgat 4680 ggaagtccgc tcattcccct ttttccttct tttgataaag tgcatcctgc atattctgta 4740 acgttttcta tgttatctga gttagatgac ccttttctaa ccaaaaagcg taaaaaatgt 4800 tttgcagatg gctgtttgga caccttctac tagtgcattg tttgtacccc ctgttaatgt 4860 acctgctttg tattctacta aagaatttgt acaacgtaca tcttatgttt ttcatggaac 4920 aactgaacgt ttgttaacaa ttggcaaccc ctattttcca ctcattgacc gtgatgtagt 4980 tatagtcccc aaagtgtctg cttatcaata tcgcgttttt agaataaagc ttccagatcc 5040 aaacaagttt ccaattcctg agtctgcacg gggggacaaa gatagtaccc ggttggtgtg 5100 ggctgtgcag ggcattcaag taaataaaag tcaaccactg ggggtggggc cctctggaaa 5160 cacaatgtca agcgggacgc ttgattatgc tgactctcac catccaggca atgaaaaacc 5220 accgcctccg gatgataggc gcataaacag cgcttcagat tcaaaacaaa gccaggtgct 5280 aattgtgggg tgtattcccc caatgggcca acattgggac gcgagcataa ggtgcactga 5340 ggataatgac aaagagatgt gtcctccctt agaattaaaa catacagtca tagaagatgg 5400 cgacatggtt gatatgggat taggcactct caatttttca acactttgct caaacaaatc 5460 caccctgcca ttagaattaa ttaactcaat ttctaaatac cccgattggt tgacaatgaa 5520 cgcggacccg tttggaaacc actgcttctt tatgctgcgc agagaacagg tgtacctgaa 5580 atctgttggc atgcaatatg gcaacgtggg tgaggatgaa cccactgatt atcacattaa 5640 gggtggcaca ggcacgctgt ggcaaacgcc aggccggcac agctggtttc cattagtatc 5700 tgggtccctt gcgacttcag acaatcagct gtataatcgt ccatattgga tagaaaacag 5760 cactgcccca aatgatggca tttgctggca taatcagctg tttgtcactt gtgcagacac 5820 aacacgcaat acaatattta atatatccac gctaaaaaag aacgtaccag ctacctcaga 5880 ctataaagag agtaatttca caaattattc ccgccatgtt gaggagtatg aaatttcgtt 5940 tatacttagg ctatgcatgg taaacatgga tttgcctgtg ctcaatcatc tccacaacat 6000 ggatcccatg ctgctagagg attgggggtt tggtaccacg cccccaccta atttaacggt 6060 agaagaccaa tataggtttc tccagtcaaa agcaaccaag tgcccaccca caccggctac 6120 cccccccgat gcagacaaat gggcaaaata caagttctgg gacgtagact gcaccgagca 6180 aatttcttcg gatctcagcc cttttccact cggtcgccgg tttttgcaac tgtacccgaa 6240 agctgcaact gctacacgca ctctgagctc cagttccaga aaacgccgtc gtggccgata 6300 atgttattat ttgaagtgct tttaaatgtt catcaacatg ctgtgtttct ttttttggtt 6360 ctttttattt acttgtgccg tgtttgtcta aaacacatca gggactacag agcagcagaa 6420 ggcctgtaag ccggatatcc aattggcggc gtcaccgggt tcattccagg taggctatcc 6480 atttggatat gttgacgtgc cgggtatggc gtgccaaatc accgtgcgcc aactggcatt 6540 actcattagc tgacttggca gtatgacaca gcacttcagc cagctggccc ttccaattgg 6600 gtatccggta attacctgct gttcctacat gtctggcatc cgtgccagct ttataattgt 6660 atgtctatct tctggcaatg ttttgagtac ccaattggat atgcaacccc taattaaatt 6720 gtcatccgta tccgttgtgt cccgcagcta cttatgttgt tataacacgc cgttatagtt 6780 atcatatcca ataggcgggg gaaaacctct tcagccgatt cgtccatgac atcgacatcg 6840 ccctgttttg gtttttcagg gtacctaata ggtggacctg taattaggaa gggcgtttct 6900 tttttccggc tagtctttat catttcggcg atcgtctggt aaggtaagtc gct 6953 //