ID EU360723; SV 1; circular; genomic DNA; STD; VRL; 7271 BP. XX AC EU360723; XX DT 11-MAR-2008 (Rel. 95, Created) DT 11-MAR-2008 (Rel. 95, Last updated, Version 1) XX DE Bovine papillomavirus BAA5-Japan, complete genome. XX KW . XX OS Bovine papillomavirus BAA5-Japan OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Xipapillomavirus. XX RN [1] RP 1-7271 RX DOI; 10.1099/vir.0.80086-0. RX PUBMED; 15269358. RA Ogawa T., Tomita Y., Okada M., Shinozaki K., Kubonoya H., Kaiho I., RA Shirasawa H.; RT "Broad-spectrum detection of papillomaviruses in bovine teat papillomas and RT healthy teat skin"; RL J. Gen. Virol. 85(Pt 8):2191-2197(2004). XX RN [2] RP 1-7271 RA Tomita Y., Jin Z., Kameyama Y., Ogawa T., Shirasawa H.; RT ; RL Submitted (20-DEC-2007) to the INSDC. RL Molecular Virology, Graduate School of Medicine, Chiba, Japan XX FH Key Location/Qualifiers FH FT source 1..7271 FT /organism="Bovine papillomavirus BAA5-Japan" FT /mol_type="genomic DNA" FT /db_xref="taxon:508418" FT CDS 332..460 FT /codon_start=1 FT /product="E5 protein" FT /db_xref="UniProtKB/TrEMBL:B1PAJ1" FT /protein_id="ACA61499.1" FT /translation="MNLRLLLLILLFWAGTSFLAMLLAILLFLMLMQRIDDLNGWD" FT CDS 659..955 FT /codon_start=1 FT /product="E7 protein" FT /db_xref="GOA:B1PAJ2" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:B1PAJ2" FT /protein_id="ACA61500.1" FT /translation="MRGQAVTLPDITLELTDVVSPVSLDCEEELEIEEVESPDPYAVDA FT SCFNCHTNLRIVVVASPEGIRGLQLLLFGPLSLLCPACATRTCASRRPQRNGS" FT CDS 945..2771 FT /codon_start=1 FT /product="E1 protein" FT /db_xref="GOA:B1PAJ3" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:B1PAJ3" FT /protein_id="ACA61501.1" FT /translation="MDPKGIESLIDDQAQCSESDSQEGCEESLSDISDLIDNAECVQGN FT SAELFAQQEAFEFEEHIRTTKRKLNLASRKPLQCLASQSNRSPRRAASKRRLLDDSGYD FT EDFSGKVVQVDENGNSEGYGSLGSQGKRKDITDYFKRTVKGTDKENVDCRSLLRSSSHR FT AAKLAVFKDIFNISLSSLTRPFKNDKTCCRHWVGAMFGAREELMEASKTILQKSCDYIM FT LLNHTCKFGFLLLYMLEFKNGKSRETVRRLFENLLQLEKEDMFLDPPKLRSLPAATFWW FT KAGYSRGAYTWGELPDWIARQTLLTHQKAEDEPFDLSRMVQWAYDHDYTDEAIIAYYYA FT RLASEDSNAAAFLRCNNQVKHVKECAQMCRYYKTAEMREMPMGKWIRKCLDSIEGVGDW FT KQLINFLKYQGINFLSFLACFKDLLHSVPKRNCMVIVGPPNTGKSMFVMSLMRAVKGKV FT LSFVNSRSHFWLQPLHGAKLAILDDATKCTWQYFDQYLRNGLDGTPVSLDVKHRAPMQI FT CFPPLLITTNIDVMKEPQYSYLHSRLMAFEFPNPFPLDEAGNPALIINELSWKSFLERL FT WQQLELTDPEEEEDGEPRSPFRCCARTATGDL" FT CDS 2713..3969 FT /codon_start=1 FT /product="E2 protein" FT /db_xref="GOA:B1PAJ4" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:B1PAJ4" FT /protein_id="ACA61502.1" FT /translation="MESLEARFDAVQEQLLGIYESNTNSLEVQIDYWQLIRKEQALYYL FT ARQQGKTRLGLYTVPLSRVSEKKAKDAIKMTLYLQSLQKSPFASQPWSLSDTSLETFLA FT APENTFKKRGAHVTVTYDKDAANAMVYTLWKEVYHLDAEDKWHRGTSEVDYDGIFYTDA FT EGNKVYYVHFGEDAARYSSLGQWDVHFENQVLSPPVTSSLSNRPTARGDTGAETRKNTR FT SPATSNRRGSPHPRHSRRGRQGSPPSALPRSRSRSRSRSRSRSRSAGSDSSVVQQRRQQ FT STPRDRGGGGGGGRSWREFGDRPPPSPGQVGTGSRTPERRPASRLAHLIEEAYDPPVLL FT LQGGANTLKCFRRRANISHPHKFVCMSTSWTWVCKTSTRKSSHRMLVAFTNSDQRKTFL FT ATVRLPKGVSAVKGNLDAL" FT CDS 3176..3703 FT /codon_start=1 FT /product="E4 protein" FT /db_xref="UniProtKB/TrEMBL:B1PAJ5" FT /protein_id="ACA61503.1" FT /translation="MMEYFTLTQRGIRCTMCTLERMLLVTLAWDNGMCILKTKFFLLLL FT PVLFLTGPPPEETPGPKPGKTPDLLQPPTEEGRRIPDTPGEGDRGRPRPRYPDLVRDRD FT RGLGRGRGPRDRTPASYNRGGNSLPREIGEEEEEEEEVGENLETGLRRLLDKWEQDLER FT LRDGLRHALLTL" FT CDS 3983..5566 FT /codon_start=1 FT /product="L2 protein" FT /db_xref="GOA:B1PAJ6" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:B1PAJ6" FT /protein_id="ACA61504.1" FT /translation="MVRAARRKRASEDDLYRGCLAGQDCPTDIKNKYEQNTLADRILKW FT VSSFLYFGTLGISSGRGSGGAGGYTRLGTVESGGGVRPGKGPNVARPTVIVDALGPAGA FT PIDPAAPDSAIVPLLESSGGSTTTDLIPGGGEVEIIAEVHPPPTIGDPDIVIGEPDEPP FT ILEVTPETHPASRVRYSTSKHDNPAFNAYVASSQLPGETSAADNVYIMHGFNGDYVGPA FT TTDTVFEEIELQDIGVPESPPSASTPDSAFRTVLNRFQRRLYNRRLVQQVKLTDRTFLT FT HPSRLVRWEFENPAFDESLSLLFEQDVNEVAAAPAEEFQDIVKLSRPFFSEKEGLVRVS FT RLGQRGTIRTRSGLQIGGHVHYFTDISPIRPVEDIEMQTFGEVSGDSIIMQPLGESTFI FT NADATIDANLNDGLLQYSDSVLEDDYNEDFSHVRLEVTTGRSTSIITVPDGIPPGSVKM FT FINDANSTVTPIPPDANGNAFTPITPRVPLTPLSPAYTPTIIIDFEDGSATFFLHPSLL FT RKHKHKHWFF" FT CDS 5364..7106 FT /codon_start=1 FT /product="L1 protein" FT /db_xref="GOA:B1PAJ7" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:B1PAJ7" FT /protein_id="ACA61505.1" FT /translation="MMQIVLLLLYHLMLMVMHLHPSHQEFHLLHFHLHIHPLSLLILRT FT AQPHFFCIQACFENTNINTGSFNVLQMSFWLPSAGRLYLPPPTPVTQYLDTDDFVTRTE FT IFYHTNTERLLTVGHPYFDIKDLEGKILVPKVSGSQFRVFRLKFPDPNKFSFPNANVYD FT PDKQRLVWAIRGVEICRGQPLGIGATGHPAFNRLADAENANKYPTQTTDDRMNMCVDPK FT QIQLFVVGCIPCDGEHWDVAQPCKKQNVGDCPPIELVNTLIEDGEMCDTGFGNMNFRAL FT QATKSGAPLDIVNQTVKYPDFLKMGSDPYGNQMFFYAKREQMYLRHLWSRGGELGDTIP FT PNGGPVSPYYMSGTGNGRTTFVPSVYFGTPSGSLVSSDQQIYNRPFWIQRAQGANNGIC FT WNNQCFITAVDTTRGTNFTISVHKSEEGPREQDTYTASDYKHYLRHVEEWEVSLIMQLC FT IVDLSPEAVAYLHGMNASILDNWNLGFIQPPNNLEDQYRYLSSVATRCAKPDDQPEKED FT PYSKMHFWDVDLSERFSSNLEQHSLGRKFLFQIGKRATKRSAPKTVGFEKNTSKAAKRR FT RKNT" XX SQ Sequence 7271 BP; 2159 A; 1469 C; 1710 G; 1933 T; 0 other; acctggtgtg cacctggcag cactctcaag aggaaaatat gtggcacacc tattagtaag 60 ctttaaactt tattggataa taaaaagtct ttaagaggcg tccaagttgg catataactc 120 acaactcagg cgcgcctggc agtgcgccct tgcaagccca gactgttgca ccgaaaacgg 180 taaatttggc tgcaccaagt aagtagttgt agttaacaac aatatatgct gtgttaatac 240 ttgtaccaaa ttcggttctc accgtttgag gtacatataa aaggctgctc acggggtcta 300 agcggatgga gctttgcagt tcccttcaac catgaacttg cgtctcttac tgttgatttt 360 gctcttttgg gcagggacaa gctttcttgc tatgctttta gcaattttat tgtttctaat 420 gttaatgcaa agaattgatg acttgaatgg atgggactaa ttgtaatttg ttaattgttt 480 tattgatatt ttgtgctgac aattgtgggg acagtctttg cttttttctg cctcttgctt 540 atggtgaatt ttgtgcacgt agcattaggt gtggacagct ataaattagc tgacctttgc 600 tcacttaatt ggtgtaaggc gccactgcag ttaaagggct ggtggtttag caggaaaaat 660 gaggggacag gctgtgacac tacctgatat cactctggaa ttgacggacg tagttagtcc 720 agttagcttg gattgtgaag aggagctaga aattgaggag gttgaaagtc ctgaccctta 780 tgcagtagat gcttcctgct ttaattgtca taccaatctc cgaatagtag tcgtcgcttc 840 acctgaagga atccggggtc tccagctcct gctttttggt cctttgtcct tgttgtgtcc 900 agcctgtgcc acccgaacgt gcgctagccg cagaccacag cgaaatggat cctaaaggta 960 ttgaaagctt aatagacgac caagcgcaat gtagtgagtc tgatagccag gaagggtgtg 1020 aagagagctt gtctgatata tctgacctaa ttgataatgc tgaatgcgtg caagggaatt 1080 ctgcggaatt gtttgcacaa caagaggctt tcgagttcga ggagcacata cgcactacaa 1140 agcgaaagtt aaatcttgca tcccgtaagc ctttacaatg ccttgccagt cagagtaaca 1200 ggagccctcg tagagctgcg tccaaaagga gattgctgga cgacagtggt tatgacgaag 1260 atttttctgg aaaggtggtt caggtagatg aaaatggcaa ctctgagggt tacgggagtt 1320 taggctctca ggggaaaaga aaagacataa ctgattactt taagcgcacc gttaaaggta 1380 cagacaagga aaatgtggac tgtaggagct tgctacgatc aagcagccac agagcagcta 1440 agctggctgt gttcaaggac atttttaata taagcttaag ctctttgaca agacctttta 1500 aaaatgataa gacatgctgc agacactggg tgggggctat gtttggggca agagaggagc 1560 ttatggaagc ctctaaaaca attctgcaaa aatcctgtga ttatattatg ctgttaaacc 1620 atacttgtaa atttggtttt ttgctattgt acatgttaga atttaaaaat ggtaaaagta 1680 gagagactgt aagaaggctt tttgaaaatt tgctgcagct ggaaaaagag gatatgtttc 1740 ttgatcctcc taaacttaga agcttaccag ctgcaacatt ttggtggaaa gctgggtaca 1800 gtcggggagc gtatacttgg ggggaactgc cagattggat agctcgtcaa acattgctaa 1860 cacatcaaaa agctgaggat gagccttttg atttgtctag aatggtgcag tgggcttatg 1920 atcatgatta tacagatgaa gcaatcattg cctattatta tgctcgctta gcttctgaag 1980 atagtaatgc tgcagcgttt ttaaggtgta ataatcaagt gaaacatgtt aaagagtgtg 2040 cacaaatgtg taggtattat aagactgcag aaatgagaga gatgccaatg ggaaaatgga 2100 ttaggaaatg tttagatagc attgaaggtg ttggggattg gaaacaattg attaacttct 2160 tgaagtacca aggcataaac tttttgtcat ttttagcatg ctttaaagat ttgttgcaca 2220 gtgttcctaa aagaaattgc atggtgatag tgggaccacc aaacactgga aaatctatgt 2280 ttgttatgag cttaatgagg gctgttaaag ggaaagtgtt atcatttgtg aattctagaa 2340 gtcatttttg gctgcagcct ttgcatggtg caaaattggc tattttagat gatgctacaa 2400 aatgcacatg gcaatatttt gaccagtact taagaaatgg actagacggc accccagttt 2460 cactggatgt gaagcataga gcacctatgc aaatatgctt cccaccatta ttgataacaa 2520 ctaatataga tgtcatgaaa gagcctcaat attcatactt gcatagcaga ttgatggctt 2580 ttgaattccc aaaccctttc cctttagatg aagcgggaaa tcctgctttg attatcaatg 2640 aacttagttg gaaatctttt cttgaaaggc tttggcaaca gctagaactg acagatccag 2700 aggaagaaga agatggagag cctcgaagcc cgtttcgatg ctgtgcaaga acagctactg 2760 gggatttatg agtctaacac aaactcttta gaagtgcaaa ttgactattg gcagctgata 2820 agaaaagagc aggccttgta ttatcttgca agacaacaag gtaaaacaag gctaggactc 2880 tatacagtgc ctctttcgag agtgtcagaa aaaaaggcta aagatgcaat caagatgact 2940 ttgtatttgc aaagcctgca gaaatcccct tttgcaagcc agccttggtc tttgtcagac 3000 acaagcttag agactttttt ggctgctcca gaaaacactt tcaaaaagag aggagcacat 3060 gtgactgtta catatgataa agatgctgct aatgcaatgg tatacacttt gtggaaagaa 3120 gtgtatcact tagatgctga ggacaaatgg cacaggggca caagtgaggt agattatgat 3180 ggaatatttt acactgacgc agaggggaat aaggtgtact atgtgcactt tggagaggat 3240 gctgctcgtt actctagctt gggacaatgg gatgtgcatt ttgaaaacca agttctttct 3300 cctcctgtta ccagttctct ttctaaccgg cccaccgcca gaggagacac cggggccgaa 3360 accaggaaaa acaccagatc tcctgcaacc tccaacagaa gagggtcgcc gcatcccaga 3420 cactccagga gagggcgaca ggggtcgccc ccgtccgcgc tacccagatc tcgttcgcga 3480 tcgagatcga ggtctcggtc gaggtcgagg tccgcgggat cggactccag cgtcgtacaa 3540 cagaggcggc aacagtctac cccgagagat cggggaggag gaggaggagg aggaagaagt 3600 tggagagaat ttggagacag gcctccgccg tctcctggac aagtgggaac aggatctcga 3660 acgcctgaga gacggcctgc gtcacgcctt gctcacctta tagaagaagc ctacgacccc 3720 ccggtgttac ttttgcaagg tggtgcaaac actttaaaat gttttcggag aagggccaat 3780 atcagtcacc ctcataaatt tgtgtgcatg agcactagct ggacttgggt gtgcaagacc 3840 tccacccgca aatctagcca tagaatgcta gtggctttta cgaactctga ccaaagaaag 3900 actttcttag caactgtgag actccccaaa ggtgtatctg cggtgaaagg gaatttagac 3960 gctctgtaaa acttctatta aaatggttcg tgcagcaaga cgaaaacgtg cctctgagga 4020 tgatttatac aggggctgtc ttgcagggca agattgtccc actgacatca aaaacaagta 4080 tgaacaaaac acattagctg acagaatttt aaagtgggtc agctcttttt tgtactttgg 4140 aaccttagga atcagcagtg gcagaggttc aggaggagcc gggggttata cacgcctagg 4200 cactgttgaa agtggaggag gagtaaggcc tggaaagggt cctaatgttg caagaccaac 4260 tgtaatagta gatgcacttg gtcctgcagg agcacctatt gatcctgcag ctccagactc 4320 agcaatagtg ccccttttgg aaagcagtgg gggaagcaca actacagacc taataccagg 4380 gggtggtgag gtagaaatca ttgcagaagt gcaccctcct cctacaatag gggaccctga 4440 tattgtcatt ggcgaacctg atgagccccc aattttagaa gtcactccag aaactcaccc 4500 agcatcaaga gtaaggtata gcactagtaa acatgacaac cctgcattta atgcatatgt 4560 tgcaagctct cagttgccag gagaaacttc tgcagctgac aatgtgtaca taatgcatgg 4620 ctttaatggg gactatgtag ggcctgcaac cactgacact gtgtttgaag agattgaatt 4680 gcaagacata ggggtaccag aaagtcctcc ttcagctagc acacctgaca gtgcctttag 4740 aactgtctta aacaggtttc aaagaaggct gtacaatcgc aggcttgtgc agcaagttaa 4800 gctcactgac agaacatttt taacacatcc atcccgattg gtcagatggg aatttgaaaa 4860 tcccgccttt gatgagtctc taagtctatt gtttgagcaa gatgtgaacg aggttgcagc 4920 agctccagca gaagaatttc aggacatagt aaaattaagc aggccatttt tttcagaaaa 4980 agaaggctta gtcagagtaa gtaggctggg acaaagaggc actattcgca ctcgaagtgg 5040 cctgcaaatt ggtggacatg tgcattattt tacagacata agcccaatta ggccagtgga 5100 ggatatagaa atgcaaacct tcggggaggt ttcaggagac agtataatta tgcagccatt 5160 aggtgagagt actttcatca atgctgacgc cactatagac gccaacctta atgatgggtt 5220 gcttcaatac tctgacagtg tcctcgagga tgattacaat gaggatttca gtcacgtacg 5280 ccttgaggtg accactggta ggtcaactag cataatcaca gtgcctgacg gtatcccccc 5340 tggctcagtc aaaatgttta ttaatgatgc aaatagtact gttactccta taccacctga 5400 tgctaatggt aatgcattta cacccatcac accaagagtt ccacttactc cactttcacc 5460 tgcatataca cccactatca ttattgattt tgaggacggc tcagccacat tttttttgca 5520 tccaagcttg cttcgaaaac acaaacataa acactggttc ttttaatgtt ttacagatgt 5580 ctttttggct tcccagtgca ggaagactat acttgccacc acctacacct gtgacacagt 5640 acttagacac ggatgacttt gttacacgaa ctgaaatatt ttatcacacg aacactgaac 5700 gccttctcac agtgggtcac ccctattttg acatcaagga cttggaagga aaaatattgg 5760 tgcccaaagt atcagggagc caatttagag tgttcagact caaatttcca gaccccaaca 5820 agttcagctt tccaaatgcc aatgtatatg accctgacaa gcaacggctt gtttgggcca 5880 ttcggggagt ggagatatgc agagggcagc cacttggtat aggagccaca ggtcatcctg 5940 cattcaatag gcttgcagat gctgaaaatg caaacaaata ccccacacaa accacagatg 6000 acaggatgaa tatgtgtgta gatcctaagc aaatacagct ttttgttgta ggctgcattc 6060 cttgtgatgg ggaacactgg gatgttgctc agccctgcaa aaagcaaaat gtgggcgatt 6120 gcccccctat tgagcttgta aacactctta ttgaagatgg tgagatgtgt gacacagggt 6180 ttggaaacat gaattttaga gccctgcaag ctacaaaatc tggagcccct cttgatattg 6240 taaaccagac agttaaatac ccagacttct taaaaatggg tagtgatcca tatggaaacc 6300 aaatgttctt ctatgcaaaa agagagcaaa tgtatttaag gcatttgtgg tctcgaggtg 6360 gagagttagg agatacaatc cccccaaatg gtggaccagt cagcccctac tatatgtctg 6420 gtactggaaa tggcagaaca acatttgttc cctcagtgta ctttggcact ccaagtggtt 6480 ctttagtttc cagtgaccag caaatttaca ataggccatt ctggatacaa agggcacaag 6540 gtgctaataa tggtatttgc tggaataacc aatgcttcat aacagcagta gatactacta 6600 gaggcacaaa cttcactatt tcagtgcaca aaagtgaaga aggccctcga gagcaagaca 6660 cttacactgc ctcagattat aaacattatt taaggcatgt agaagagtgg gaggtctcac 6720 taatcatgca actctgcatt gtagacctaa gtccagaagc agttgcatat ctgcacggaa 6780 tgaatgctag cattcttgac aattggaatt taggtttcat acagccccca aacaatttag 6840 aagaccaata cagatacctc agctcggtag caacccgctg tgcaaagcca gatgatcaac 6900 cagagaaaga agacccttat agcaaaatgc atttttggga tgtagactta agtgaaaggt 6960 tttcttctaa tcttgaacaa cattctctag gaagaaagtt cctgtttcaa ataggcaaaa 7020 gagctaccaa acggtctgca ccgaaaacgg ttggctttga aaaaaacacc tccaaggcgg 7080 caaagcgtag gcgtaaaaat acctaaggcc aatttcctat gagcaaatac ctgaaatctt 7140 taatgtagat tgcattatgt ttctttttat gtaagagatg aataaaaaag ttgaaatgtg 7200 gaaccagctt atctcttgtt tttccttccc cactcccttt tttctatgca ccccactccc 7260 tatttccgtg c 7271 //