ID EU277647; SV 1; circular; genomic DNA; STD; VRL; 7277 BP. XX AC EU277647; XX DT 04-JUN-2008 (Rel. 96, Created) DT 04-JUN-2008 (Rel. 96, Last updated, Version 1) XX DE Bandicoot papillomatosis carcinomatosis virus type 2, complete genome. XX KW . XX OS Bandicoot papillomatosis carcinomatosis virus type 2 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; OC unclassified Papillomaviridae. XX RN [1] RP 1-7277 RX DOI; 10.1016/j.virol.2008.03.014. RX PUBMED; 18440042. RA Bennett M.D., Woolford L., Stevens H., Van Ranst M., Oldfield T., RA Slaven M., O'Hara A.J., Warren K.S., Nicholls P.K.; RT "Genomic characterization of a novel virus found in papillomatous lesions RT from a southern brown bandicoot (Isoodon obesulus) in Western Australia"; RL Virology 376(1):173-182(2008). XX RN [2] RP 1-7277 RA Bennett M.D., Woolford L., O'Hara A.J., Warren K.S., Nicholls P.K.; RT ; RL Submitted (13-NOV-2007) to the INSDC. RL Veterinary Pathology, Murdoch University, South Street, Murdoch, WA 6150, RL Australia XX FH Key Location/Qualifiers FH FT source 1..7277 FT /organism="Bandicoot papillomatosis carcinomatosis virus FT type 2" FT /host="Isoodon obesulus" FT /isolate="1" FT /mol_type="genomic DNA" FT /country="Australia" FT /note="similar to Bandicoot papillomatosis carcinomatosis FT virus type 1 in GenBank Accession Number EU069819 type: 2" FT /db_xref="taxon:500654" FT misc_feature 1..840 FT /note="contains origin of replication" FT gene 841..2250 FT /gene="L2" FT CDS 841..2250 FT /codon_start=1 FT /gene="L2" FT /product="minor capsid protein" FT /db_xref="GOA:B3FN91" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:B3FN91" FT /protein_id="ABZ89641.1" FT /translation="MRARRKKRDSAQNIYRTCQITGNCPPDVKDKIEGTTVADKILQYL FT SSILYLGGLSIGTGRGGGGSTGYRPIGGGGGGDISIGGSRIPKPPTGAIDVIGPDIVQV FT DAVAPEAPSVVPMEEVTVNVTDFGGDTVTEVDLVPGTGGSPTLQTEDGAILEIAPETPQ FT LSRRRVTVSSHLNTIFESVINTPDPLLDSSNPNQILIDAVSEGTTIGSEEIELKTFATS FT TPSDFSRVRPIYPRNTLTVPKPLETIVNPLGTFDNPAFESIDIEDVPDFPGGTKLHRVQ FT YGQKSGIVVSRLMDTEAMQTRSGLRFGAQFQLYHELSPINPLENAIIEMRIINNADSNP FT AVFNLDDFSIIDITEPEEYSDAELLHVEELPFNNVRLQISVQSGGERPNMSIFSAPERN FT YPFLPDFLADVFVNNSEKSSLRNIDRSIPVTPDVPVGPLDAFDSIDFYLHPSLLVKKKR FT KRRYVKYKKFI" FT gene 2263..3771 FT /gene="L1" FT CDS 2263..3771 FT /codon_start=1 FT /gene="L1" FT /product="major capsid protein" FT /db_xref="GOA:B3FN92" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:B3FN92" FT /protein_id="ABZ89642.1" FT /translation="MAIWQPNGKVYLPPSAPVARILNTEEYIQRTNLFYHANTERLLTV FT GHPYYEIKDNLDPSKIGVPKVSANQYRVFRIKLPDPNRFALGDKSLYDPEKERLVWGVR FT GLEIERGQPLNVGSSGNVLYNKFKDTENPNNYAKEGEDERQNVSHDPKQMQMLLVGCKP FT ATGEHWDAAKTCAERPPNKGDCPPLELVNSIIEDGDMIDIGYGNLNFKTLCGNKSDVPL FT DINTTTTKYPDFLKMTSDQYGDSLFFYTKRESTYARHFWTRGGTPGDPIPEELFVNPSD FT NQKILGSSTYFTVPSGSLVSSESQLFNRPYWLQKATGQNNGICWNNDLFITVVDNTRNC FT NFTISVFNKADSSQGQTYKSSNYNMFLRHVEEFELNFIFEICKVPLKADVLAHINAMDP FT RILEDWSLGFVPSNNFPLEDKYRFINSLATRCPDKETPKEKEDPYRSNTFWTVELEERM FT SSELDQYPLGRKFLFQSNISSINTVAKPRKRKATTPTTKTKRRK" FT gene complement(5049..7277) FT /gene="LTag" FT /note="large T antigen; coding region not determined; may FT contain a small intron" FT gene complement(6600..7277) FT /gene="stag" FT CDS complement(6600..7277) FT /codon_start=1 FT /gene="stag" FT /product="small t antigen" FT /db_xref="GOA:B3FN93" FT /db_xref="InterPro:IPR001623" FT /db_xref="UniProtKB/TrEMBL:B3FN93" FT /protein_id="ABZ89643.1" FT /translation="MDNSDYLEFLELIGCDTYDGPENIKKKYRKAALKNHPDKGGSANK FT MKRLNELNQIYTECGPPQNKRYRPSSHYEEEDLFCYESGGEDEPDTCSYNRSDSGFSEG FT NYTTPDPSGFSASNVSFSQSCRNVKLLLDITETLGHGRHCAHTLEAIDKNNKMDWELFD FT TFCATPGNHHLTIMFIEHCYMKLKDWQWSLMNFVNYGPSYLEEIKEAANAINWSQLDDM FT IFS" XX SQ Sequence 7277 BP; 2345 A; 1347 C; 1383 G; 2202 T; 0 other; gctgatctat ctctgttctt gttgtcagag tgttaggtac agactgcctt atatactgag 60 ccattttttt tttttcggct tcaactctgg caaacattgc cagagtagct ccgtaaaaag 120 aagggagttg cactgtcagc aaattataaa aacaggtgca gaacaaggaa atttgacatt 180 acatgtaaaa ctgttcacct gccaaacata catgaatggt ttgtgccgtg tgcaaaacat 240 gagtcaggtt gcagcaggat gctgcagaag ttttggcaga cataaacttt gtgagtaagg 300 aagttggcag tcagcagaat tttttttgga aataagtcac tatgactaac agtttaaaaa 360 cctggcatcc ctttaaaaaa ggctgctccc tggcacgagc actagacatc ctgtcttcac 420 ctactatcca gatgtgcacc ctgcgtgcat agaaactatc catctcccag aggcatcgat 480 ttgacatgat tctgatcgaa acctgggagg attaaagaga tgtgagatgt gatgattttg 540 atgattgatg tgatacttgg aacacacaca ttttgggtga ataccaacag tgaccgtggg 600 aaagctttgg ttagggattt ctcggaaaag gaggtcccaa ctaaacaata gatcctaaaa 660 taatcctgca tatcattaca aagaagacct ccctctgaac cacccctgat cctccccgaa 720 tattactccg cctgaaacct ctaggaatag cctctgacac agtaagtaaa aaaaaacacc 780 ttaaagggat agctataata taaatgtcca accaaaattc ttattgatta cagggtcatc 840 atgagagcaa gaagaaaaaa gagagattct gcacaaaata tatatagaac atgtcaaatt 900 actggaaatt gtcctccaga tgtaaaggat aaaatagaag gaaccactgt tgcagacaaa 960 attctgcaat acttaagcag tatcctttat ttaggtggtt taagtatagg aactggtagg 1020 ggtgggggtg gttccaccgg ttacagacct attggagggg gaggtggggg agatataagt 1080 attggtggtt caagaattcc aaaacctcca actggggcaa tagatgtaat aggtccagat 1140 atagttcaag tggatgctgt tgcaccagaa gcaccttcag ttgttcctat ggaagaagtg 1200 actgttaatg ttacagattt tggaggtgac acagtcacag aagttgattt agtaccaggt 1260 accggagggt cacccacact tcaaaccgaa gatggggcta tcttagaaat agccccagaa 1320 acacctcaac tttctagaag aagagttaca gtgtcatcac acttaaatac aatctttgaa 1380 tcagtaataa acactccgga tcccttgtta gacagtagta atcctaatca aatactgatt 1440 gatgcagtaa gtgaaggaac aacaatcgga tcagaggaaa tagaattaaa aacttttgct 1500 acaagtaccc ctagtgattt cagcagagtt agacctattt accctagaaa cactcttaca 1560 gtacctaaac ctcttgaaac tattgtcaat cccttgggga cgtttgataa tcctgcattt 1620 gaatctatcg atattgagga tgttcccgat ttcccgggtg gtacgaaatt acaccgggtt 1680 cagtatggac aaaagtctgg gattgtagtt tctagattaa tggatacaga agctatgcag 1740 actagaagtg gactaaggtt tggtgctcaa tttcaattat atcatgagtt aagccctata 1800 aaccccctag aaaatgctat tatagaaatg agaattatta ataatgctga ttcaaatcct 1860 gcagtgttca atttagatga cttctcaatt attgacataa ctgagccaga ggagtattct 1920 gatgcagaat tactacatgt agaagaacta ccctttaata atgtcagact tcaaatttct 1980 gtgcaatcag gaggagagcg accgaatatg agtatcttca gtgctcctga aagaaattat 2040 ccattcttac ctgacttttt agctgatgta tttgttaata atagtgaaaa gtcctctttg 2100 agaaatattg atagaagtat acctgtcact cctgatgtac ctgtagggcc tttagatgct 2160 tttgatagta tagattttta cttgcatcca tctctattag taaaaaaaaa gaggaaaaga 2220 agatatgtaa aatacaaaaa gtttatataa tgtgtttttc agatggccat ttggcaaccc 2280 aacggaaaag tttacctacc tccatcagcc cctgttgcaa gaatattaaa tacagaagaa 2340 tatatacaaa gaacaaacct attctatcat gctaatactg aaagattatt aactgtaggg 2400 cacccatatt atgagataaa agacaattta gatcctagta aaataggagt tccaaaagtt 2460 tctgctaacc aatatagggt ttttagaatt aaacttccag acccaaatag atttgcttta 2520 ggggataaaa gtttatatga tcctgaaaag gagaggttag tgtggggagt gagaggcctt 2580 gaaatagaaa gaggacagcc tctgaatgtg ggaagctcag gtaatgtgct ttataataag 2640 tttaaagaca ctgaaaaccc aaataattat gccaaagagg gggaagatga aagacaaaat 2700 gtttcgcatg atccaaagca gatgcaaatg cttttagttg gctgtaaacc tgcaacaggt 2760 gaacattggg atgctgcaaa gacctgtgct gagagaccac caaataaagg tgactgtcca 2820 cctctagaat tagttaattc aatcatagag gatggagata tgatagatat aggatatggc 2880 aacttaaatt ttaaaaccct ttgtgggaat aagtctgatg tgcctctgga tataaatact 2940 acaaccacca aatatccaga cttcctaaaa atgacatcag atcagtatgg tgattctcta 3000 tttttttata ctaaaagaga atcaacatat gcaagacact tttggactag aggaggtaca 3060 cctggtgatc caatacctga agaactattt gtaaatccta gtgacaatca gaaaatctta 3120 ggttcttcaa catatttcac agttcctagt ggctccctgg taagtagtga gtctcagctc 3180 tttaatagac cctattggtt gcaaaaggca accggtcaaa ataatggaat ctgttggaac 3240 aatgatttat ttataactgt agttgataat accagaaatt gtaattttac catatctgtt 3300 tttaataaag ctgattcttc ccaaggacag acctataaat ccagtaacta taatatgttt 3360 cttagacatg ttgaggaatt tgaacttaat tttatttttg agatctgcaa agttccacta 3420 aaggcagatg tattagcaca tattaatgct atggatccca ggattcttga agactggagc 3480 ctgggctttg taccttcaaa taatttcccc ttagaagaca agtatagatt tatcaattct 3540 cttgcgacaa gatgtccaga taaggaaaca cctaaggaaa aggaggatcc ctatagatca 3600 aatacattct ggactgtgga attagaagaa aggatgtcat cggaacttga tcaataccct 3660 ttaggcagaa agttcctatt tcaaagtaat attagctcaa taaatacagt tgcaaaacca 3720 aggaagagaa aagcaacaac accaacaaca aagacaaaaa ggaggaaata gtaagtatag 3780 tatttgttta gtatttgttt actgattgta atctttttaa taaagtgcat atgacagaac 3840 cttggaccac agttgttttt aattggcact aaccatggga aatgttccat tttgaggcct 3900 acatgatcca tgccaaatag attagtttgt accgatttgg gataagaagg gtgggcacta 3960 agctttgatt ttgcccaaag aagaacatct gcagggtgtg tgagatcatg gattagcctc 4020 tccctcaatg tggcctgatt tcttgtttac aaactgtgat tggtcatgtg gtagggatct 4080 aatatattga ttactataat taaataaggt tccaatatat ttaatatgtc agttgctcaa 4140 ttattgacac cttgtggtga ggattagaat acatcttaac ctttaacctt ttaattgcca 4200 tgtacctccc agtctgtaca actggttatt aaactgcaca gctagctgtt ttaaagctgg 4260 ttcctggtct gttaacccta aacttaacct gttaccttca aacaaacctg atcacccaga 4320 aatgaaccac ttaacccttt atatgaacct gataacacaa agatgaaccg gattaaccct 4380 taaataaacc tgattacctc aagataaata tgttaagacc caaaaaaaac atttttatca 4440 gttgtagtgg gtagatcacc tacagagatc acccacatag catcccacag aaccctaaag 4500 gtacagaata atactattgt tctatttgta agtatattac cgccgtatcg gcttatacct 4560 ctgcagccgc tctgcagcgg cttgccctgg aagctggata gtgaaactaa attaccgtaa 4620 ttttctaaga ctggaaagcg aaaataaaat tttattgttt ctggatacca gccctaggta 4680 aattaatagg gtcaggtgat ttttcccagt atcccctgca ctaaaatatg ggctgttcct 4740 accgtatgtg ggtctataaa aggggctgca gaggtctgaa agctgtgcac actgtgcaca 4800 tgtattgcag gttgcaaata catgtgctca gtgtggacac aaaatcacag ttagctaata 4860 gttagtgcaa atagccaaac ttagtagctt tgaattgcac gatagctctc aggcttagta 4920 ctttataaac cgaaagtata taatactgtg cttgagagtg cgcggtaaat aaacattaga 4980 cacgggtttt gagcagcact gtttattaat actgtgcttg ggagtgcacg cagacagcaa 5040 aagacagctt aaaagcaggg ttcttcagca ttaattgcag atacataatt aagaaatctc 5100 tcagtaaata ttgagtccaa taattcaagc tctgatttat gttttttagc aaaatcttta 5160 gtaaaaaagc tagaatacat attaacaatc acaaacagca atgtttcagc tttagttagg 5220 aacctactat tcttaacctg aatattggct tcaagtgctt ttctaaagtg atgattagtc 5280 tgaaaattat atgttttcat gcatcttaca gaaactgtag gtggtagtaa atagtcattc 5340 attgttataa gagcaggtgg gaatatctga gataccttat tttgatgctt cctttctagg 5400 tttacacata cagaaccctc tagatgatct cgcatattat ctaggtttat tatcccaaag 5460 ccaggtggta gcattgatcc ttctagaggt ttacccttca catcctcaaa taataccatg 5520 tattgatcaa ttgcacatcc aagttcaaac tgcaacctat caggtgttcc attgacattt 5580 aaagagcagc ctgtcaacaa gtttaatatt gcagaggcca ctgtagtttt tccagtatta 5640 acaggcccct taaatacaaa atttcttttt ttggggggat tggttacaag tgtctgaagg 5700 ataagcttca tttcttcctc attaggtaat attaaattta aaagtaaagc agaggctgtt 5760 aacatattac atgcttcttc acttctagtc atgtctacta gatttttaag aacttcttct 5820 aatctctctt caaacctctc ttccctagat tgtgttacaa ctttcaatct tttatttgcc 5880 ataacacagt caactgcata ctgacaagcc ctcttttgat cttttgtttt acttaatctt 5940 ttagcatttt catggtgttt acaatgatct tttgcatgat ttttatgcag gcctgtaaga 6000 agcaattgat cttttacaca cagcttacac ccttgtggag agctagcaaa ggttttatac 6060 aaacctaaca aaagcaagct atctactaca gatttatcct ctgcaaattc attaagtaat 6120 tcatgatcta attgtaaaac atcctcctta tctttgaacg ataaagggaa ttcatctgtt 6180 acaaccacat tttcagataa ttccttatat aatttcccca tacaaggctt tttaaccccc 6240 cttacaagta tttcagtgac agtacaaatt gctttgcata gtgaaatgag tgtagaaatc 6300 cttagtggac tctgcaggac caaaagtaac atgtttaatc catcttcata atctacatgt 6360 agatgtccct caatcccata tttactttca agcatttgca tcagtaattc aagcttagta 6420 ggcgttgacg ttgcaaggaa gcaaatagga gtgctttgca aagagtttct tgcaatgaga 6480 tatttttcca ggcttacagg aatagataaa ggcttgtttt ttggaggtgt tgagaagctt 6540 ggctgaaaag atccctccgg tgttgagcat cttggaggag gacttgagca tctggtaaac 6600 tatgaaaaga tcatgtcatc aagctgagac caattaattg catttgcagc ctcttttatt 6660 tcctcaagat atgaaggccc ataattaaca aaattcatca gtgaccactg ccaatcctta 6720 agtttcatgt agcaatgttc tataaacatt atagtcaggt gatggtttcc tggagttgca 6780 cagaaggtat caaacaactc ccaatccatc ttgttattct tgtcaatagc ttccagtgta 6840 tgagcacagt gccttccgtg ccccaaagtc tcagttatat ctaagagaag cttaacattt 6900 ctacaggatt gtgaaaaact cacatttgat gcagaaaatc cggacggatc tggtgtggta 6960 tagtttcctt cgctgaaacc ggaatcactg cgattatagg agcaggtatc aggttcatcc 7020 tcacccccgc tctcatagca gaatagatct tcctcctcat aatgtgatga aggtctatat 7080 cttttgttct gaggaggtcc gcattcagta tatatctggt tcagctcatt aagccttttc 7140 attttatttg cagaaccacc tttatcaggg tggtttttta atgcagcttt tctatatttc 7200 tttttaatat tttctgggcc atcatatgta tcgcagccta taagctcaag aaactctaaa 7260 tagtcactgt tatccat 7277 //