ID EU069819; SV 1; circular; genomic DNA; STD; VRL; 7295 BP. XX AC EU069819; XX DT 01-DEC-2007 (Rel. 94, Created) DT 01-DEC-2007 (Rel. 94, Last updated, Version 1) XX DE Bandicoot papillomatosis carcinomatosis virus type 1, complete genome. XX KW . XX OS Bandicoot papillomatosis carcinomatosis virus type 1 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; OC unclassified Papillomaviridae. XX RN [1] RP 1-7295 RX DOI; 10.1128/JVI.01662-07. RX PUBMED; 17898069. RA Woolford L., Rector A., Van Ranst M., Ducki A., Bennett M.D., RA Nicholls P.K., Warren K.S., Swan R.A., Wilcox G.E., O'Hara A.J.; RT "A novel virus detected in papillomas and carcinomas of the endangered RT western barred bandicoot (Perameles bougainville) exhibits genomic features RT of both the Papillomaviridae and Polyomaviridae"; RL J. Virol. 81(24):13280-13290(2007). XX RN [2] RP 1-7295 RA Woolford L., Rector A., Van Ranst M., Ducki A., Bennett M.D., RA Nicholls P.K., Warren K.S., Swan R.A., Wilcox G.E., O'Hara A.J.; RT ; RL Submitted (27-JUL-2007) to the INSDC. RL School of Veterinary and Biomedical Sciences, Murdoch University, South RL Street, Murdoch, WA 6150, Australia XX FH Key Location/Qualifiers FH FT source 1..7295 FT /organism="Bandicoot papillomatosis carcinomatosis virus FT type 1" FT /host="Perameles bougainville (Western barred bandicoot)" FT /mol_type="genomic DNA" FT /country="Australia" FT /isolation_source="papillomatous and carcinomatous FT cutaneous lesions" FT /note="type: 1" FT /db_xref="taxon:479058" FT CDS 818..2227 FT /codon_start=1 FT /product="minor structural protein" FT /note="putative L2" FT /db_xref="GOA:A9QH31" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:A9QH31" FT /protein_id="ABW76696.1" FT /translation="MRARRKKRDSAHNIYRTCQITGNCPPDVKDKIEGTTIADKILQYL FT SSILYFGGLGIGTGRGGGGSTGYRPIGGGGGGDVNIGGTRIVKPPAGAIDVIGPDILPV FT DAVAPEAPSVVPLEEVTINITDNVAETVTEINLDPTGTGTPTVQTEDGAILEIIPDTSE FT IPRRRVTVSSHYNTIFETIVDNPDPLTDSSNPTHTLIDVPSEGTVLGTEEIELKTFSTS FT TPKDVTRTGPKYPRNTLTIPKPLETIINPLGTFDNPAFESLEIDDLPEFPDGTKLHRVQ FT YGQKSGITVSRLMDTEAMQTRSGRRFGAQFQLFHELSPINPTENANIEMKVLNAPESNP FT IVFNLEDFSVVDITEPEEYSDLELLHVEELPFNNLRLQITVQSGGERPNMSIFSIPEKN FT YPFLPYWMSDVYVNNSQLISLSDLQDSIPVTPNSPLTPSDDFDSYDFYLHPSLQLKKKR FT RKKTIKYKKFI" FT CDS 2240..3757 FT /codon_start=1 FT /product="major structural protein" FT /note="putative L1" FT /db_xref="GOA:A9QH32" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:A9QH32" FT /protein_id="ABW76697.1" FT /translation="MAIWQPNGKVYLPPSAPVARILNTEEYIQRTSLFYHANTERLLTV FT GHPYFEIKDKLDQTKIGVPKVSANQYRVFRIKLPDPNRFALGDKSFFDPEKERLVWGIR FT GLEVERGQPLNVGSTGNVLYNKFKDTENPNNYAKEGDDERQNVSHDPKQMQLLLVGCKP FT ATGEHWDAAKTCADRPLNKGDCPPLELVNTIIEDGDMMDIGYGNMNFKALTGNKSDVPL FT EISRSTTKYPDFLKMTSDQYGDSLFFYTKKESTYARHFWTRGGTSGDPIPEDLFVAPTD FT NQKILGSANYFTVPSGSLINSEAQLFNRPYWLQRATGQNNGICWNNDLFITIVDNTRNC FT NFTISVFNKADESQGQTYKSSNYSVYLRHVEEFELNFIFEICKVPLKPEVLAHINAMDP FT RILEDWSLGFIPSNNITLEDRYRFINSLATRCPDKETPKEKEDPYKSNTFWNIDLEDRM FT SSELDQYPLGRKFLYQSSISTINTIAKPRTGKRKSTTSPTTKTKRRK" FT gene complement(5070..7295) FT /gene="putative large T antigen" FT /note="coding region not determined; may contain a small FT intron" FT CDS complement(6621..7295) FT /codon_start=1 FT /product="putative small T antigen" FT /note="non-structural protein" FT /db_xref="GOA:A9QH33" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003095" FT /db_xref="UniProtKB/TrEMBL:A9QH33" FT /protein_id="ABW76698.1" FT /translation="MDNSDYLEFLKLIGCDTCDGPENIKKSYRKAALKMHPDKGGSTNA FT MKRLNELNQSYLEYGPPQNKRYRPTPQYEEDLFCYESEGDDEPDTCSYNRSDSGFSEGT FT CPTPDPSGFSASNVSFHQSCKNVKLLLDITETLGHGRNCAHTLEAIDKNNRMDWELFDT FT FCSTPGNHHLTLMFIDHCYMKLKDWQWSLMNFVNYGPPYLEEIKEAANGIDWSELDDMI FT FS" XX SQ Sequence 7295 BP; 2389 A; 1366 C; 1360 G; 2180 T; 0 other; gattgctatt ctctgcctca gctctataac tgttgcagac tatagatgca ggcagccttt 60 tatactgagc catttttttt tttcaggctg cactctggca aactttgcca gagtacctcc 120 gtaaaaagaa gggagttgca gtgtcagcaa aatgaaaagc aggtgcagga tcagaatctt 180 tgattttaca tgcaaactgt tcacctgcca aacatatatg aatgaagtag tgccgagtgc 240 aaaagcatga ctcaggatgc tgcaggatgc tgcagagagt ctggcacact caaagtttgt 300 gagtaaggaa cttggcagtc gacaaatgtt ttttttaaaa atatttatta tgactaacag 360 tttaaaaacc tggcatcctt ttaaaaaagg ctgatccctt tggcacgagc attaggcatc 420 ctgtcttagc tctatgcaga tgttcacctt gcgtgtatag aaactatcca tctcccacag 480 gcatcgattt gacatgattt tgaacgaaac ttgaaaggat taaggattga tacttggaac 540 agacatcctt ttgggcatag cccaacagtg accgtgggaa agctttggtt aagagtttct 600 cggaaaagga ggtcctagct aacaaaagat cctaaaaata attctgcata tcattacaga 660 agaagacctc cctctgtacc acccctgatc ctcccaatta ttactccgcc tgaaaactct 720 aggaatagcc tctgacacag taagtaaaac aaatgtctta aaggtgtagc tataatatac 780 tattccaact aaggtttttg ttaattacag ggtcaacatg agagccagaa gaaaaaagcg 840 agattctgca cataatatct atagaacatg tcaaatcact ggaaattgtc ctcctgatgt 900 aaaggacaaa attgaaggaa ccactattgc agataaaatc ctgcaatatt taagcagtat 960 cctttatttt ggtggattag gtataggaac aggtagaggt ggtgggggtt caacagggta 1020 tagacctata ggtggagggg gtggaggtga tgtaaatatt ggtggaacaa gaattgtaaa 1080 acctccagct ggggcaatag atgttatagg cccagatatc ctcccagttg atgctgttgc 1140 accagaggca ccttctgtgg tacctttgga agaagtaacc attaatataa cagataatgt 1200 ggctgaaaca gttacagaaa taaacctaga tcctacaggt acaggtacac ctactgttca 1260 aacagaagat ggggctattt tagagataat tcctgataca tctgaaatac caagaagaag 1320 agttacagta tcatcacatt ataatactat atttgaaaca atagtagata atccagatcc 1380 tcttacagat agtagtaatc caacccatac acttatagat gtaccatctg agggaactgt 1440 gctaggaaca gaagaaattg agctaaaaac attttcaact agtacaccta aagacgttac 1500 aaggacagga cctaaatatc caagaaacac tcttacaata cctaaacccc ttgaaactat 1560 tataaatcct ttaggaacat ttgataatcc tgcatttgaa tcattagaaa tagatgatct 1620 acctgaattc ccggatggta cgaaattaca tagagttcaa tatggacaaa agtctggaat 1680 aacagtttct aggttgatgg atacagaagc tatgcaaaca agaagtggaa gaagatttgg 1740 ggctcaattt cagctatttc atgaattaag cccaataaat cctacagaaa atgcaaacat 1800 agaaatgaaa gtattaaatg cacctgaatc aaaccctata gtctttaatt tagaagattt 1860 ctctgtagtt gatattactg aaccagagga atattctgat ctagagctat tacatgttga 1920 ggagctgcct tttaataatc ttaggcttca aattactgtc cagtcaggtg gagaaagacc 1980 aaatatgagt atctttagta tacctgaaaa aaattatcct ttcttacctt attggatgag 2040 tgatgtatat gtcaataata gtcagctaat aagcttaagt gaccttcaag acagtatacc 2100 tgtcactcct aattcacctc taactccatc agatgatttt gatagctatg acttctactt 2160 gcatccatca ctacagctaa agaaaaaaag aagaaaaaaa accataaaat acaaaaagtt 2220 tatataatat ctttttcaga tggccatttg gcaacccaac gggaaagtat atctacctcc 2280 atcagcccca gttgcaagaa tattaaacac agaagaatat atacaaagaa ccagtctttt 2340 ctatcatgct aatactgaaa ggctactaac agtaggccat ccatattttg agattaaaga 2400 caaattagat caaacaaaga ttggcgttcc taaggtgtcc gctaatcaat acagagtatt 2460 cagaataaaa ttaccagatc ccaatagatt tgcattaggt gataagagtt tctttgatcc 2520 agagaaagaa agactagtat ggggtattag aggccttgaa gtagagagag gtcagcctct 2580 taatgttggc agtactggga atgtactgta caacaagttt aaagataccg aaaatcctaa 2640 taattatgca aaagaagggg atgatgagag gcaaaatgtc tctcatgacc caaaacagat 2700 gcaactatta ctagttggtt gtaagccagc tacaggtgaa cactgggatg ctgctaagac 2760 atgtgctgac agaccattaa ataaaggtga ctgtccacct cttgaattag ttaataccat 2820 aatagaggat ggggatatga tggatatagg atatggtaat atgaatttta aagcccttac 2880 tggtaacaaa tcagatgtac cacttgaaat tagtagaagt actactaaat atcctgattt 2940 tctcaaaatg acatctgatc aatatggcga ctccttgttt ttttatacta agaaggagtc 3000 aacatatgca agacactttt ggactagagg agggacatca ggtgacccaa taccagaaga 3060 tctttttgta gcccctactg ataatcaaaa aattttaggg tcagcaaact attttacagt 3120 acctagtggc tctctgatta acagtgaggc acagcttttt aataggcctt actggctgca 3180 aagagcaact gggcaaaaca atggaatatg ctggaacaat gatctattta ttacaattgt 3240 tgataataca agaaattgta attttactat ttctgtattc aataaggctg atgaatctca 3300 gggtcaaaca tataaatcaa gtaattatag tgtatatcta agacatgtag aagaatttga 3360 gctaaacttt atttttgaaa tatgtaaagt ccctctcaag ccagaagtcc tagcacatat 3420 aaatgcaatg gatcctagaa ttctggagga ctggagctta ggttttatac cttcaaataa 3480 tataaccctg gaagatagat atagatttat aaattcactt gcaactagat gtccagataa 3540 agaaaccccg aaagaaaaag aagatcctta taaatcaaat accttttgga atattgattt 3600 agaagataga atgtcttcag agcttgatca atatccttta gggagaaagt tcttgtatca 3660 gagcagtatt agtacaataa atacaattgc aaaaccaaga acaggtaaga gaaaatcaac 3720 aacctcacca acaacaaaga caaaaagaag gaaatagtaa gtatagtttt gtttactgat 3780 tgtatctttt taataaactg atcatttgac agaatcttgg actaatgttg tttttcattg 3840 gcaccaggta tgggaaatgt ataattttca ggcctacatc attatgcagt tagtctgtgt 3900 gtaccaaaga ttagggataa gaggggtggg cgataagctt taaatttgcc caaagacaaa 3960 acatctgcag ggtgtgtgag atcatgtgtt agcctctccc tcatcatggc ctgatttctt 4020 gtttacatct tctgattggt catgtggtta ggatctaata ttgattacta taattaaact 4080 tagagatcaa atatatttga ttgctcaatt actatttgac accttgtggt gaggattaga 4140 atatacatct taacctttaa cctttgtatt acctgatcct cccagtctgt gaagtgcaac 4200 tagttattat ctgctagata gctgtaactg gactgttaag cctgacagtc tagcttaacc 4260 tatactgaac ttgattacct ggagatgacc tggcttaccc ttaaagttaa acttgattac 4320 ccagtgatga actagcttaa ccccacagtt aaacctgatt acccacagat gaacttgctt 4380 aaccctacat taaacttgat tacctagaga tgcacccatt aacccttgaa aatgcaccaa 4440 aataaacttt tttatctgat atgtaggtgg atcacccaca tagatcaccc acaaatcagc 4500 ccacattcaa cccacagcta cagaatacaa ttgatctcta tctattgtta tatgcattct 4560 ctatataaag ctgcagcggc cgtgccgctt ttcgttgcag ccgttctgca gccgcttcgg 4620 ctaataatga aagtaagttt tgtttaccag agacgcaaag cgaaaataat ttttaatagc 4680 ctggatatct gccatgacag ttaaatcagt agggtcaggt gatgttaccc agtattccct 4740 gcagtaagtt aggggatgtt cccagcttat gtgggcttat aaaaggggct gcagaggtct 4800 gtagcttgtg cacactgtgc acatgtattg ctgcttgcaa atacatgtgc tcagtgtgga 4860 cacaaaatca cagttagcta attgttagtt ccattatccc aacttagtac ttttgaatcg 4920 catgggaact ctcaggctta gtactttata aaccgaaagt ataatactgt gcttgagagt 4980 gcgcggtaaa aaaacattag acacgggttt agagcagcac tgtttattta atactgtgct 5040 tgggagtgca cacagaaaag aacaagcagt tagaagcagg ctttctcagc attaattgca 5100 gatacataat ttgaaaatct ctcagtgaat attgagtcta acagttcaag ttctgcttta 5160 tgagctttgg tgaaatcttt agtaaaaaat ccagaataca tagtaacaaa tataaacagt 5220 agagtctcag cctttgttaa gaatctacta ttctttacct gaatatttgc atcaagtgca 5280 ttcctgaaat gatcatttgt cttgaaattg tagattctct tacatctcac agttactgta 5340 ggtgggagga aataatcatt catagttata atagaaggtg gaaaaatttg agatacctta 5400 ttttggtgct tcttttctaa attaacaggt acagagcctt ctaggtgatc tctcatatta 5460 tctagattgg taataccaaa ccctggaggt aataatgtgc tttctagagg cttacccttc 5520 acatcttcaa ataataccat gaactggtca atagcacacc ccaattcaaa ttgcaatcta 5580 tcaggagttc cattaacatt caaagagcat ccagtgagca gattaagtat ggcagaagcc 5640 actgtggttt tcccagtatt aacaggacct ctaaatacaa aatttctttt tttcggagga 5700 tttgttacaa gtgtctgcag aattagtttc atttcctcct caggaggtaa gattaaattt 5760 agaagtaaag cagaggctgt taacatattg caggcctctt cacttctggt catatcaatt 5820 agattttgca gaacctcttc caatctctcc tcaaaccttt cttccctaga ctgtgaaaca 5880 accttcaacc ttttgtttgc catgacacta tccactgcat actgacaggc ccttttctga 5940 tcttttgttt tacttaatct tttagcattt tcatggtgct gaacatggtc cttagcatga 6000 tttttgtgta ggcctgtcag aagcagttga tcctttacac aaagtttaca accttgaatg 6060 gtgttacaaa aggtcttata caaacctaac aaaagcaaac tatctgtaat tcctttactt 6120 tctgcaaatt catttagcaa ttcatggtct aattgtggcg aatcatcttt gtccttatag 6180 gtcataggaa attcatcgtt gagaactaca tattcagaca attccttata taatttcccc 6240 atacaaggct ttttaacccc ccttacaagc acttcagtga cagtactaat agttttacaa 6300 agtgaaatga ttgttgaaat ccttagcgga ctttgcagga ccaaatataa catgtgcaaa 6360 ccatcttcat aatctacaag aagattaccc tcagtcccat atttactttc aagcatttgt 6420 atcagtaatt caagctttgc aggcgttgat gttgcaagga agcaaatagg agtgctttgc 6480 aaagaatttc ttgcaatgag atatttttcc aggcttacag gaaaacataa aggcttgttt 6540 tttggaggtg tagagaagct tggctgaaaa gatccctccg gtgttgagca tcttggtgga 6600 ggacttgagc atctggtaaa ctatgaaaag atcatgtcat caagctcaga ccaatcaatc 6660 ccatttgcag cctcttttat ttcctcaaga tatggaggcc cataattaac aaaattcatc 6720 agtgaccact gccaatcctt aagtttcatg taacaatgat ctataaacat taaagtcaga 6780 tgatggtttc ctggagttga acagaaggta tcaaacaact cccagtccat cctgttattc 6840 ttgtcaatag cttccagtgt atgggcacaa ttccttccgt gccccaaagt ctcagtaata 6900 tctaaaagaa gcttaacatt tttacaagat tgatgaaaac tcacatttga tgcagaaaat 6960 ccagaggggt caggtgtagg gcaggttccc tcactgaatc cagaatcact gcggttgtag 7020 gagcaggtgt caggctcatc atcaccttca ctctcgtagc agaacagatc ttcctcatat 7080 tgtggagtag gcctgtatct tttattctgt ggaggtccat actccaggta actttgattc 7140 agctcattta gccttttcat tgcatttgta gagccacctt tatcaggatg catttttaat 7200 gcagcttttc tatagctttt ttttatattt tctgggccat cacaagtatc acaacctata 7260 agcttaagga actctaaata atcactgtta tccat 7295 //