ID EF680235; SV 1; linear; genomic DNA; STD; VRL; 8032 BP. XX AC EF680235; XX DT 02-JUL-2008 (Rel. 96, Created) DT 02-JUL-2008 (Rel. 96, Last updated, Version 1) XX DE Western roedeer papillomavirus 1 isolate CcPV-1, complete genome. XX KW . XX OS Capreolus capreolus papillomavirus 1 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; OC Deltapapillomavirus. XX RN [1] RP 1-8032 RX DOI; 10.1016/j.virusres.2008.03.002. RX PUBMED; 18417239. RA Erdelyi K., Balint A., Dencso L., Dan A., Ursu K.; RT "Characterisation of the first complete genome sequence of the roe deer RT (Capreolus capreolus) papillomavirus"; RL Virus Res. 135(2):307-311(2008). XX RN [2] RP 1-8032 RA Erdelyi K., Balint A., Dencso L., Dan A., Ursu K.; RT ; RL Submitted (14-JUN-2007) to the INSDC. RL Mammal Pathology, CAO, Veterinary Diagnostic Directorate, Tabornok u. 2, RL Budapest H-1132, Hungary XX FH Key Location/Qualifiers FH FT source 1..8032 FT /organism="Capreolus capreolus papillomavirus 1" FT /host="Capreolus capreolus (roedeer)" FT /isolate="CcPV-1" FT /mol_type="genomic DNA" FT /country="Hungary" FT /isolation_source="cutaneous fibropapillomas" FT /db_xref="taxon:470214" FT CDS 129..533 FT /codon_start=1 FT /product="E6" FT /note="transforming protein" FT /db_xref="GOA:B3ST90" FT /db_xref="InterPro:IPR001334" FT /db_xref="UniProtKB/TrEMBL:B3ST90" FT /protein_id="ABV27560.1" FT /translation="MPDNAFTSLSCLWCKNKLKRVDALRCELKDIQPVTRDGFVFAACT FT GCLELALWMERNVFPGIVVHPGDCSSNPPWITSLRIRCMYCGAKLTADEKDRHRYFEEP FT YVSFRGRVRGRCYDCCRDGTRPQYKQGASE" FT CDS 493..819 FT /codon_start=1 FT /product="E7" FT /note="transforming protein" FT /db_xref="GOA:B3ST91" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:B3ST91" FT /protein_id="ABV27561.1" FT /translation="MVHGPNTSKVLPNESLIPLTLHLKPLKPEKPAVTVACSLTHEQPR FT PSRPPPKPPRMSVYYVGVCCGCCEKKLDFAVRTSQTSITSFHALLLEDLDILCALCEGK FT TRHG" FT CDS 812..2650 FT /codon_start=1 FT /product="E1" FT /note="replication protein" FT /db_xref="GOA:B3ST92" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:B3ST92" FT /protein_id="ABV27562.1" FT /translation="MDEHAGSSGVGGSSFILYEADCDSSCDSDDESQVLHSSDEDFVDN FT ASVGPGNHLELFQTQQKEAGDLHVSNLKRKLLLSPRSDNSEVEQLSPSFAAITFRPNKR FT NPLVKRRLFESGEQASSAVSVRHEANCISSPRLQVLNGYGSQSSEKGVGSPSDTDSARK FT MAASIQKLFRLLFVASFGEVTRVFHSNKTTNQQWVIAAVGVSEVLYTASFELLCRQCTF FT LQTTRRVHETGSLCVYLAVFNAAKSRDTVSKLMSNMLNVQEYKLQLQPPKLRGVCPALF FT WYKLSLSQATSTYGVLPEWIQQQTNVSYNVGDAVKFDFGTMVQWAYDQKLTDESKIAYD FT YARIAGSDSNAKAFLASSNQARLVKDCSTMVKHYLRAEVQALTMSAFIKRRCDQTAGSG FT SWLGIMNLFKFQGIEPIRFVTALRTWLKGVPKKNCLALIGPPNSGKSMLCNSLISFLGG FT RVLTFANHQSHFWLAPLSDCRAALIDDATHACWKYFDTYLRNVLDGYPICIDRKHKSAV FT QMKAPPLLVTTNIDVHSEEKYLYLHSRVTPFYFKEPCPTDENGEPVFSITDADWKHFFE FT RLWGRLDLSEQEDEGEEDECSQRTFTCSARAANGTD" FT CDS 2592..3815 FT /codon_start=1 FT /product="E2" FT /note="replication protein" FT /db_xref="GOA:B3ST93" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:B3ST93" FT /protein_id="ABV27563.1" FT /translation="MSAASERLLAAQEQQMELIEKNSQCLADHVIFWETVRSEQVLLYA FT ARKKGLTMLGMCPVPACSVSAEKAKQAIEMQLLLTEMLETPWGQLPWSLCDTSWDRYVQ FT EPKKCLKQGARIIEVEYDGNSSNKTWYTAWSALYMRTSTGWELYTGSADGLGLYFASMN FT GARTYYEFFSKDATRYGTTGTWIVRDGHNVFHSPSGPSPHLRHNLEGLWQHNYDPVSRG FT TDAPDRAVFDSSPRHSPFHGPFRAGQDRNRTAGRPSPYSSHSSGSAAGSNSSPALPSAV FT PLGDQRGEEGDSPPSPDSTEVTSQAAAAAAVTFNLFGTEGAHQCLLVTGNGNQVKCYRF FT RIKKNHRHRYRDCTTTWWTVGDEGSERQGNATVLITFISPDQRRDFLKAVPLPPGMVAR FT GLTVTPDF" FT CDS 3157..3498 FT /codon_start=1 FT /product="E4" FT /db_xref="UniProtKB/TrEMBL:B3ST94" FT /protein_id="ABV27564.1" FT /translation="MATMCFTHLLVHPLTLDTTLKACGNTTTTQCQGGPTRPTEPSLTL FT LLDTLPFTVPSELAKTGIGPQVARLPTHLTPRGVLLAAIPPPRCRARYRWVINEGRKAT FT RHHHQTPQK" FT CDS 3879..4019 FT /codon_start=1 FT /product="E5" FT /note="transforming protein" FT /db_xref="InterPro:IPR012555" FT /db_xref="UniProtKB/TrEMBL:B3ST95" FT /protein_id="ABV27565.1" FT /translation="MEMQHGGLLCVFCTIWFLQLSLLFFMLIVFLVYWERWGCRCDKLP FT I" FT CDS 4361..5824 FT /codon_start=1 FT /product="L2" FT /note="minor capsid protein" FT /db_xref="GOA:B3ST96" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:B3ST96" FT /protein_id="ABV27566.1" FT /translation="MPPLKRVKRANVYDLYRTCKQAGTCPADVIPKVEGKTVADKILQY FT GSLGVYLGGLGIGTGMGKAPPGGYVPLRGGGSSASLPSNPFAGGIPLESLETWGSFRPG FT IIEDAGPLVEGTVPDAPAVIIPESVPVDEGVSGLDVSSDISTDTAITFLSAEGADDIAV FT LEVRPTEHLQPHVMSRSNFQNPLYQPPVRHASVIADTSGSENILVGGTGVGSQSGESIE FT LSLFNGPRTSTPAEPFQGRKGLFNWFSKRYYTQVPVEDPDEIAAAGSYVFENPVYDSKA FT YKPEQQLDTLQPAQESEYTSAARILQGPSGRIGVSRVSRPTSIGTRSGVRVGPLYHLRH FT SFSTIDEPVSLELLPLITEDSEVLTSVTEAHLGTEDFEDIDLESFDSDMTLFESTDHHI FT SQGAGGRRRLLLPVTHTKSLGVGAISSSAQGQGIAYEDTEYVNENGGHGSTPTVVIDGN FT INLQEVLYRQYFLHPSLMKRKRRRKRLFG" FT CDS 5838..7361 FT /codon_start=1 FT /product="L1" FT /note="major capsid protein" FT /db_xref="GOA:B3ST97" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:B3ST97" FT /protein_id="ABV27567.1" FT /translation="MAFWQPGQKLYLPPTPVTKVLCSEQYIQRRDIFYHAETERLLTVG FT HPFYEVKLKDKTVPKVSPNQFRVFRVSLPDPNQFALPDKTVHNPSKERLVWAVVGIQVS FT RGQPLGGAITGHSYFNALLDTENINRKVGQQTTDDRKQTGMDAKQQQVLLIGCTPALGE FT YWTKARPCVTDKPDAGSCPPLELKNKPIEDGDMMDIGFGAANFKELNASKSELPLDIAN FT EICLYPDYLKMTEEAAGNSMFFFARKEQVYVRHIWSRGGTDKELPPAETYYLQPKGGLG FT NTQKMPSVFFGSPSGSLVSTDGQLFNRPYWLFRAQGMNNGLAWNNQLFVTVGDNTRGGN FT ITVTVPVDDKPMTEYDTSKFNVYQRHVEEFKLAFILQLCSVQLTPETVSHLQGLMPSVL FT EHWDINLQPPTSSMLEDIYRFINSPATKCADNVVQPGPEDPYAGLKFWEINLKEKLSLD FT LDQFPLGRRFLAQQGLGCSTRTLKRTRSKVDLTTSASNRRVRTKRNRGT" XX SQ Sequence 8032 BP; 2139 A; 1777 C; 2023 G; 2093 T; 0 other; gttaacaatc acaagacctt aaccgtttct agaaagcggg aaagatggta tcaggtttct 60 ataaaagctc acaccgcaca aggttaggga taccatccct ggagagatct cttcgcgttt 120 tctgcctcat gccagacaat gcattcactt ctctaagctg tctttggtgc aaaaacaagc 180 ttaaaagggt tgatgctttg agatgtgaac tcaaagatat acaacctgta acccgtgatg 240 ggtttgtttt tgctgcttgc actggttgcc tggagctggc tctatggatg gaaagaaatg 300 tattcccagg catagtagtg caccctgggg actgttcatc taatcccccg tggattacat 360 ctttgagaat ccggtgcatg tattgtggcg ccaagcttac agctgatgaa aaagacagac 420 atagatattt tgaagagccc tatgtaagct tcaggggtcg ggtccgggga cgttgctacg 480 actgctgtcg ggatggtaca cggccccaat acaagcaagg tgcttccgaa tgaatcactt 540 atacctttga ccctgcacct gaaacctttg aaacctgaga agcctgccgt cacagttgcc 600 tgctctctga cccacgagca accaaggcct tccagaccac cccctaaacc cccacggatg 660 tcagtttact atgttggggt atgctgcggc tgttgtgaga aaaaactgga cttcgcggtg 720 agaacgagcc agacgtctat aacctcattc catgcactgc tcctggagga cttagacatc 780 ctgtgtgctt tatgcgaggg aaaaacaaga catggatgaa catgcaggta gttctggggt 840 gggtgggtct tcttttattc tgtatgaagc tgactgtgac tcttcctgtg atagtgatga 900 tgaatctcag gtgctgcaca gcagtgatga ggattttgta gataatgcga gtgtaggacc 960 gggaaatcac ctggagctat tccaaacaca gcagaaagag gcgggagact tacatgtttc 1020 gaatttgaaa agaaaactgc ttttaagtcc ccgctcagat aattcagagg tggagcagct 1080 tagtcctagc tttgctgcaa tcacatttag accgaacaag cgtaaccctc tcgtaaagcg 1140 gaggctgttt gaatctgggg aacaggcgag ctctgcagta tctgtgcgac atgaagctaa 1200 ttgtatttct tcgccaagac tgcaggtact taatgggtat ggctctcaaa gctctgaaaa 1260 gggggtgggc tcaccttcag atacagatag tgcaagaaaa atggctgcca gcattcagaa 1320 gctgtttaga ctgctgtttg tcgcctcctt tggcgaagtt acaagggtgt tccacagcaa 1380 taagacaacg aatcagcagt gggtgatagc tgctgtaggg gtatccgagg tgctgtacac 1440 tgcaagcttt gaattgctat gcagacagtg tacctttttg caaactacac gaagggtgca 1500 tgagacagga agtctgtgtg tatatttggc tgtctttaat gcggctaaaa gcagagacac 1560 tgtctcaaaa ttaatgagta atatgctgaa tgtacaagaa tacaaactgc agctgcaacc 1620 accaaagctt aggggggtat gtcctgcttt gttctggtat aagctgtctc tttctcaggc 1680 cacctccaca tatggtgtgc ttccagaatg gatacagcag caaacaaatg tgtcttataa 1740 tgtaggggat gccgttaagt ttgactttgg aaccatggtg cagtgggcat atgatcagaa 1800 gctcacagat gaatccaaga ttgcatatga ttatgctaga attgcaggtt ctgacagtaa 1860 tgcgaaggca tttttggcaa gcagtaatca ggcacgtcta gtcaaagact gttccacaat 1920 ggtaaagcat tatctgagag cagaagtgca agctttgaca atgtctgcat ttatcaaaag 1980 gcggtgtgac cagactgcag gaagtgggag ttggctgggg atcatgaatt tgtttaaatt 2040 tcagggcata gagcctataa gatttgtcac tgccctcagg acttggctaa aaggtgttcc 2100 aaagaaaaat tgccttgcat tgatcggccc ccctaacagt ggcaagtcta tgctctgtaa 2160 ttctttgatc tccttcctgg ggggcagggt tctaactttt gcaaatcatc aaagtcattt 2220 ctggttggct cctttaagcg actgcagagc tgcattaatt gatgatgcta ctcatgcctg 2280 ctggaagtac tttgacacat acctcagaaa tgtgctggat gggtatccca tttgtattga 2340 tagaaagcac aaatctgcag tccaaatgaa agcacctccc cttttagtaa cgactaatat 2400 tgatgtgcat tcagaggaaa agtatctgta tttgcacagc agagtcactc ccttctactt 2460 caaggagcct tgtcccaccg atgagaatgg tgagcccgtt ttttctatta ctgatgcaga 2520 ctggaaacat ttctttgaaa ggttatgggg acgcttagac ctgagtgagc aagaggacga 2580 gggggaagaa gatgagtgca gccagcgaac gtttacttgc agcgcaagag cagcaaatgg 2640 aactgattga gaaaaatagt cagtgtcttg ctgatcatgt aatcttctgg gagacagtgc 2700 ggtcagagca ggttttgctt tatgctgctc gaaaaaaggg tctgactatg ttggggatgt 2760 gtccagtacc tgcatgcagt gtaagtgcag aaaaggccaa gcaagcaata gagatgcaat 2820 tactgttgac tgagatgttg gaaacaccat gggggcagct gccatggtct ctttgtgata 2880 ccagctggga tcggtatgta caggaaccta aaaagtgtct taaacaaggc gccagaatca 2940 ttgaagtgga gtatgatggg aacagcagta ataagacctg gtacactgcc tggagtgcac 3000 tgtacatgcg cacaagcaca ggctgggagc tatacactgg cagtgcagac gggctaggtt 3060 tatacttcgc cagcatgaat ggggcacgga catattatga gttcttttca aaagacgcca 3120 ccagatacgg gacaacaggg acgtggattg tgcgggatgg ccacaatgtg tttcactcac 3180 cttctggtcc atcccctcac cttagacaca accttgaagg cctgtggcaa cacaactacg 3240 acccagtgtc aagggggacc gacgcgcccg accgagccgt ctttgactct tctcctcgac 3300 actctccctt tcacggtccc ttcagagctg gccaagaccg gaataggacc gcaggtcgcc 3360 cgtctcccta ctcatctcac tcctcgggga gtgctgctgg cagcaattcc tcccccgcgc 3420 tgccgagcgc ggtaccgctg ggtgatcaac gaggggagga aggcgactcg ccaccatcac 3480 cagactccac agaagtaacc tcgcaagccg cagctgcagc cgcagtcacc ttcaatctct 3540 tcggaactga aggtgcgcat cagtgcctcc ttgtgactgg aaatgggaac caggtgaagt 3600 gctataggtt ccgcattaaa aaaaatcaca gacacaggta cagagactgc actactacat 3660 ggtggactgt aggagatgag ggatcagagc ggcagggaaa tgcaactgtg ctaatcactt 3720 tcatctcacc tgatcagaga cgagattttc tgaaagcagt gcctttgcca cctggcatgg 3780 ttgccagagg actgacagtt acccctgact tttgagtgtt tgtccactct cactaactgc 3840 aacaaatact gtgcagctgt aatggcactc tgctggtaat ggaaatgcaa cacggtgggc 3900 ttctttgtgt gttttgtact atctggttct tgcagctttc tctgttgttt tttatgttga 3960 ttgtatttct ggtgtactgg gaacgttggg ggtgccgttg tgataagctg cccatatagc 4020 cgtgtttttc ttggatgtag atatcaattg atcttgtaca ggctatacct cctcacgtgt 4080 gctcgctaaa tccgtacaac cgcgcttctg actgccaagg gagtgtttac aggactcatc 4140 cagaaaggac aaagcctgca tgcgttttct attatttcta gtgtttctaa taatcttggg 4200 acagatacca ggtatttggg tcatcctcct cctcctgctg cttatcctgc tcatcgttct 4260 aatccatctc caagaggacg ttgatcagta ccggtggtcg cagtggacta agtggcttac 4320 caaaaaaaaa tagttttgta cgtgcctttg aataaaaatc atgccgcctt tgaaacgagt 4380 taagcgtgca aatgtgtatg atttataccg cacttgcaag caagctggca cctgtcctgc 4440 agatgtcatt ccgaaggtgg aaggtaagac tgttgcagat aagattctgc agtatggcag 4500 tcttggagtt tatttgggag ggctaggaat tggcactggt atgggaaagg cacctccggg 4560 aggttatgtt cctctacgcg gtggcgggtc ctctgcatct ttacctagca atcctttcgc 4620 tggtggcatt cctttggaat ccttggaaac ttggggatcc tttcgccctg gaattatcga 4680 agatgctggg cctttggtgg agggcacggt acctgatgca cctgctgtta ttattcctga 4740 gtctgtccca gtggatgagg gggtcagtgg tttggatgtt tccagtgaca tatccacgga 4800 cactgcaatc acttttcttt ctgctgaagg tgcagatgat atagcagtgt tagaggtaag 4860 gcctacagaa cacctgcagc cacatgtcat gtcacggtcg aactttcaaa atcctttgta 4920 tcaaccccca gtgaggcatg catctgtcat cgcagataca tcaggttctg agaacatttt 4980 ggtgggtggc actggagtag gaagccagtc aggggagtcc atagaactgt ctttgttcaa 5040 tggtccacgc acaagcactc ctgcagagcc ttttcaggga cggaaaggtc tattcaactg 5100 gtttagcaag cgttactaca cacaggttcc agtggaagac cctgacgaga ttgctgcagc 5160 aggctcgtat gtctttgaga atccagtata cgattcaaag gcgtacaaac ctgagcagca 5220 gcttgacact ttgcagcctg cacaggagtc tgaatatacc tctgcagcac ggatactgca 5280 gggaccgtcg gggaggattg gtgtgagcag agtgtccaga cccacgtcta ttgggactcg 5340 gagtggggtg agggtgggac ccttgtacca ccttaggcac tcattcagca caattgatga 5400 gcctgtgtct ttggaattac ttcccctcat tactgaggac agtgaggtcc taacaagtgt 5460 cacagaagca cacctgggca ctgaggactt tgaggacatt gatctggaga gtttcgacag 5520 cgacatgaca ctttttgaaa gcacggacca ccacatttct cagggtgcag gagggaggcg 5580 cagacttcta ctacctgtga cacacacaaa gtctttgggt gttggtgcaa tttcttcatc 5640 tgcacaaggt caaggtatag cctatgagga cactgagtat gtaaatgaga atggaggtca 5700 cgggtctaca cccactgttg tgatcgatgg caacatcaat cttcaagagg tattgtatag 5760 gcagtatttc ttgcacccca gtttgatgaa gcgaaaacgc agacgcaaaa gactgtttgg 5820 ataatcttgt ctttcagatg gcgttttggc agcccggaca aaagctgtat ttgccaccta 5880 cacctgtgac caaagtgtta tgctctgagc aatatataca gcgcagagac atattttatc 5940 atgcagaaac agaaaggttg ctgactgtag gtcatccctt ttatgaggta aagttaaaag 6000 acaaaacagt cccgaaagtg tccccaaatc aattccgggt ttttcgtgtc tccctgccgg 6060 atcccaacca gtttgcactt ccagataaaa cagtccataa cccctctaaa gaaaggttag 6120 tttgggctgt agtgggcata caggtatcta gagggcagcc tttaggaggg gcgattactg 6180 gccattcata tttcaatgca ttgcttgaca ctgaaaatat taacaggaag gtgggccagc 6240 aaacaactga tgacaggaaa cagacaggta tggacgcgaa acagcagcag gtattactca 6300 tagggtgcac acctgcactt ggggagtact ggaccaaggc tcgtccctgt gttacagaca 6360 agccagatgc agggtcatgc ccacctctag aactaaaaaa taaacccatt gaggacggtg 6420 atatgatgga tattggattt ggagcagcaa actttaaaga gttaaatgca agtaagtcag 6480 agttgccttt agacatagct aatgaaatat gtctatatcc tgattattta aagatgactg 6540 aggaggcggc aggaaatagc atgttttttt ttgcaaggaa agaacaagta tatgtcaggc 6600 acatttggtc ccgtggggga actgacaagg aattgcctcc agcagaaacc tattatctac 6660 aacccaaggg tggattaggg aatactcaaa aaatgccaag tgttttcttt ggaagtccta 6720 gcggatcatt agtttcaaca gatggccagc ttttcaaccg cccatactgg ctatttcgag 6780 cacagggcat gaataatggg ttggcatgga acaatcaact ttttgtgact gtaggagata 6840 atacaagagg gggaaacatc actgttacag tccccgtaga tgataagcca atgacagagt 6900 atgacacctc caagttcaat gtatatcaaa gacatgtaga ggagtttaag cttgcattca 6960 ttctgcagct gtgctccgtg caattaactc ctgaaacagt gtcccatttg caggggttga 7020 tgccctcagt cctggagcac tgggacataa acttgcaacc acccacttca tctatgctgg 7080 aggacatata cagatttatt aactcccctg ctactaagtg tgcagacaat gttgtacaac 7140 ccggtcctga agacccctat gctggactta aattttggga gattaacctc aaggaaaaac 7200 tttctctaga cttggaccag tttcccttgg gtaggaggtt tcttgcacag cagggtttgg 7260 gatgcagcac tcgaacctta aagaggacta gaagcaaggt tgatttaacg acctccgctt 7320 ccaaccgtag ggtcaggact aagagaaata ggggcacctg aggacactct aatgcaatcc 7380 cctgaaatta gctaatgagc tgtccgagct gtgaagccac gtcctgtaaa taaatgtgtt 7440 ttgtattatg tgcaatgtgt gctgactgta actacaccac acccggttga aaaatttgtt 7500 gactgagcta ttatatttga gctgtcagca tcattaattg agaacagaca gactttctgg 7560 ctgcgcgcaa cagcgccacg ctccgggagg caaagggcaa tttaggacga ccgtctgggt 7620 ttaagcaaac agaccgcctg gtgtaccgag agcaaattct accgctgacg gtggttaatg 7680 gtaagtcatt atctctacat gctaataaat accgttggtg gtagccctct ctctgtgggt 7740 gtcgatacca taagtactgc cttccggacc gaaccgtctt cgttcgcgcc aaaaccggct 7800 acggtggtgc ctaaaggacc gcctccggtc tccctttaat ctccctttaa tgttaacacc 7860 ggtaacggtg ctaagggatc aagttacagc atcgctgacg atggcatgaa agctccattc 7920 tgattggtcc ttttaaattc aaacccaaaa tcatgtcata tcttgctgca gactgaaacc 7980 aaccgtgctc ggtcgagatg agaatcttaa ttttttcatg ggaaagattg tt 8032 //