ID EF584537; SV 1; circular; genomic DNA; STD; VRL; 7742 BP. XX AC EF584537; XX DT 01-JAN-2008 (Rel. 94, Created) DT 07-FEB-2008 (Rel. 94, Last updated, Version 2) XX DE Canine papillomavirus - 4 isolate pug2006, complete genome. XX KW . XX OS Canine papillomavirus 4 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Chipapillomavirus. XX RN [1] RP 1-7742 RA Tobler K., Lange C., Ackermann M., Favrot C.; RT ; RL Submitted (30-APR-2007) to the INSDC. RL Institute of Virology, VetSuisse Faculty, University of Zurich, RL Winterthurerstrasse 266a, Zurich CH-8057, Switzerland XX FH Key Location/Qualifiers FH FT source 1..7742 FT /organism="Canine papillomavirus 4" FT /host="Canis familiaris" FT /isolate="pug2006" FT /mol_type="genomic DNA" FT /isolation_source="biopsy specimen of pigmented lesions FT from European pug" FT /db_xref="taxon:464980" FT gene 109..564 FT /gene="E6" FT CDS 109..564 FT /codon_start=1 FT /gene="E6" FT /product="transforming protein" FT /db_xref="GOA:A9XNH2" FT /db_xref="InterPro:IPR001334" FT /db_xref="UniProtKB/TrEMBL:A9XNH2" FT /protein_id="ABU86868.1" FT /translation="MARPWSVAGLCAQTGTSFENIRLPCVFCKQWMDRDDCAAFDFKIL FT QLSWKGGRPHGCCTACARSIAQRETARFTSEVITHKDFVDRVGFGLWFIPVRCPICLSL FT VSAIQKLAAITRKQKFVKVRGRWRTLCTLCTESDNDWERRHFERHCP" FT gene 524..823 FT /gene="E7" FT CDS 524..823 FT /codon_start=1 FT /gene="E7" FT /product="transforming protein" FT /db_xref="GOA:A9XNH3" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:A9XNH3" FT /protein_id="ABU86869.1" FT /translation="MIGKDATLKDIVLEEQPTPVDDLWCDEELTLSDEEEEPALNPNFK FT PFRIQTSCGTCDRGIRIVVLCTTEGIHALETLLCRNTSLCCPNCAATYRFEHGG" FT gene 813..2702 FT /gene="E1" FT CDS 813..2702 FT /codon_start=1 FT /gene="E1" FT /product="replication protein" FT /db_xref="GOA:A9XNH4" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:A9XNH4" FT /protein_id="ABU86867.1" FT /translation="MEGDLGSGTDPGEGTSAEGFLWDEADCSDMDTSEDESEDADLGDF FT IDDSLEGQLQQGNSRELLHQQTMRDDNRQVQYLKRKYGSPKQKVEVDLSPRLKAITISP FT PKQTAKRRLFAPSIDSGLELSGQNETVPTPGTEADQVDAVMLVGEEEEREGCTPPTGGY FT GPRGGGTAMVTQLMKASNLRATQYAMFKRVFGVSFTELTRAFRSNKTCNPDWVVVTFGV FT HHTLYAGIMQRLEKYCEYVQCSGTSVAAGYVLMFLMRFTAHKNRDTIHKLMRSLLNVSE FT QQILADPPKIRSTPAALYWYRNGMSNATQKYGPLPEWVTKQTLVQHQTGEEAKFTLATM FT VQWAYDNDHTEESDIAYHYALLADVDANAAAWLNTNSQAKHLKDCATMVRHYKRAIMSS FT LTMSEWIHRRIQGIDEEGDWKEIGNFLRYQHVEVIAFLGALRDMLKRIPKKTCICIVGP FT PNTGKSAFCLSLLDFFGGKVISFTNYKSQFWLMPLADTRLALLDDATRHTWDYMDEYMR FT NALDGNQICLDLKHRAPLQIRCPPLLVTSNIDIRKEDRWRYLVSRVYVVEFKSAFPFNE FT NGEPVYQLTKVNWKSFFTRLWSRLDLSDQEDEGEDGDPEKTFRCDTKRTNDII" FT gene 2644..4107 FT /gene="E2" FT CDS 2644..4107 FT /codon_start=1 FT /gene="E2" FT /product="regulatory protein" FT /db_xref="GOA:A9XNH5" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:A9XNH5" FT /protein_id="ABU86870.1" FT /translation="METLKKRLDAIQNGLMTLYEEGSNRLSDQVLHWNLCRQENVLLHF FT ARKSGVLRLGIQPVPPLRATAERAKQAIEQQLTLQSLQDTPFADEQWTLQDTSRERWTS FT EPQGCLKKGASVVEVYFGGDKGNGMHYTLWKDVYYVDCDDKWRKVKSQVDLQGIWFWEN FT GCKRYYVDFGEEDKKYGDSGRWDVYHNNEKICPSDSVTSTTPPANLCVTHPRHPEGDRT FT DGDARTAGAKRKRSNEGQDRSPRRRVSVSPADSTVDSSRRRTEEKATRRVQGPEGPQGR FT GLGGSTAEGGLCTQPHLADAPVRRRLLVSGDTGFPGQPTWTEPLSGGLGQPVQLASHPW FT STSPLDYPIPFAEADTAATARHPSIPAAAGEGPEEGRAATGEGRVPLPRPGDTGPGCIL FT REAGHSSPSVIVLSGPCNTLKCLRYRLKGQHRDLFDKISTTWYWAGEGSERIGDARILV FT TFANKHQREAFLDRARLPSTVTLHTSIFD" FT gene 4249..5775 FT /gene="L2" FT CDS 4249..5775 FT /codon_start=1 FT /gene="L2" FT /product="minor capsid protein" FT /db_xref="GOA:A9XNH6" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:A9XNH6" FT /protein_id="ABU86866.1" FT /translation="MVRARRVPRASADDLYRTCKAAGTCPEDVINKIEGKTTADKILQY FT GGAAIFLGGLGIGTAGGKGGSTGYVPLGGRVGNAVTVGTGTRVVRPPVPVDAVGADILS FT VDALSPSVVALEESVVEIPRLGVDPARAPGIPEVPAGVPLDSSGVSSVDEGPAVITVAA FT TIEPVPSHPPVRTSVTWSQYSNPAFDVVPGSDNALGETSSSSNIWITHRNGGSSIGEEI FT PLQVFRTSTPRDTPPRFEAPRRGGYPARFIEKVPVQDPRFLTSPGGLVQFDYDNPAFDP FT LEDSVLFGRPEPGEVLAAPDPAFQDVRSLGAPRFSETDSGHVRVTRLGVRGTMTTRSGV FT QLGSQAHFYHDISSITEGEWIELTGMGEHSTTTVLVSGDSANMEVVDLDSSTVSLHTLS FT SDDLEAVLGGVEDLPAFEGLRLEFQRGRNRITLDLPLSARALPGPVDIGDSGVHVDYPA FT IDSGGIYGPYGPSPPVIIVDVARGPSSDYFLHPSLYATRRRRRRRRRKHI" FT gene 5795..7294 FT /gene="L1" FT CDS 5795..7294 FT /codon_start=1 FT /gene="L1" FT /product="major capsid protein" FT /db_xref="GOA:A9XNH7" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:A9XNH7" FT /protein_id="ABU86871.1" FT /translation="MAVWVPNSQKLFLPPPAVTKVLNTDAYIKRTNIFCHADTERLLTV FT GNPFFEILAEDDRTVKVPKVSSNQYRVFRISLPDPNAFAFGERPVHDPDNERLVWGLRG FT IDVSRGQPLGNGVTGHPLFNKLFDNENPAKINTKEGKDARVSLAGDVKQTQVLIVGCAP FT AWGEHWNKTSPCGKVVKGECPPIELKNTVIQDGDMIDIGYGAMDFRSLSQNKSDAPLDI FT VRSICKYPDYLKMAKEATGDSMFFFARREQLYTRHFFSRDGESGEKIPEDLYIKGEQSR FT MTPGTQVYFGTQSGSLTSSDSQIFNRAYWLQRSQGLNNGMCWLNQLFVTVGDTTRGTNM FT TFSIATSDNGDYDASNFKTYVRHSEEFELAFIFQLCVVPLSPEVLAHLHTLNPAILDRW FT NLGLQASTSSVLEDRYRFLASLATPCPDKVTVKEPEDPYAGYSFWSVDLSERFSQDLDQ FT FPLGRKFLAQSNLSTQRSVRKRARSPSTPRTPRKTVKRRKK" XX SQ Sequence 7742 BP; 1879 A; 1942 C; 2186 G; 1735 T; 0 other; caacaacaac caccgtatac ggttaccgta ctggcaccgt gtacggtctg catgcactgc 60 caaaacttgg aacttaaata tagcacgaaa accgtttcga ggcgggctat ggcgcgacca 120 tggagcgttg caggtctctg cgcgcagaca ggaacctcct ttgagaatat cagactaccg 180 tgtgtgtttt gcaaacaatg gatggacagg gacgactgtg cagcctttga cttcaaaatt 240 ctgcagctat cctggaaagg ggggagaccc cacggatgct gcaccgcctg cgccaggagc 300 atcgcacaga gggaaacagc tcgcttcaca tcagaggtca tcacccataa agactttgta 360 gacagggtgg gattcggact gtggttcata cccgtgcgct gtcccatctg cctgtcgctg 420 gtgtcagcta tacagaaact cgccgctata accagaaaac agaaatttgt gaaggtcaga 480 gggcgttggc gcaccctgtg caccctctgc acagaatctg ataatgattg ggaaagacgc 540 cactttgaaa gacattgtcc ttgaggagca gcctacacca gtcgatgatc tgtggtgtga 600 tgaggagttg acactctcag atgaggagga ggagccggcg ctcaacccca actttaagcc 660 attcagaatc cagacctcct gtggcacctg tgaccgtggc atacgcatcg tagtcctgtg 720 caccaccgag gggatacatg ccctagagac actgctgtgc cggaacacct cactgtgctg 780 ccccaactgc gccgcgacct accgctttga acatggaggg tgacctggga tcaggtacag 840 acccaggaga gggtaccagt gcagaggggt ttctatggga tgaggcagac tgtagcgaca 900 tggatactag cgaggacgag tcagaggatg ctgacctggg cgacttcata gatgatagct 960 tggagggaca gttgcagcag gggaattccc gggaattatt gcaccagcaa actatgaggg 1020 atgacaatag gcaagtgcag tacttaaaac gaaagtatgg gagtcccaaa cagaaagtag 1080 aggtcgatct aagccctagg cttaaggcaa ttacaatatc gccacctaaa caaacagcaa 1140 agagacgcct gtttgcaccc agcattgaca gcggtctcga gctgtcaggc caaaatgaaa 1200 ctgtacctac tcctgggacg gaggcagacc aggtagacgc ggttatgctg gtaggggagg 1260 aggaggagag ggagggatgt acaccaccga cgggggggta tgggccgagg ggagggggga 1320 cggcaatggt aacgcagcta atgaaggcat caaacctacg ggcgacacag tacgccatgt 1380 tcaaaagggt tttcggggtc agctttacgg agctgacacg ggcattcagg agcaataaga 1440 catgtaatcc agactgggta gtggtgacat tcggagtaca ccacacgcta tacgcgggga 1500 taatgcagag attggaaaag tactgtgagt atgtgcagtg tagtggcacg agtgtggcag 1560 cggggtatgt gttaatgttt ctgatgagat ttacagcgca caagaacagg gataccatac 1620 acaagctcat gcgtagcctc ctaaacgtgt ctgagcagca gatactagcg gaccccccaa 1680 agataaggag cacccccgct gccttatatt ggtacaggaa cgggatgtcc aacgccacgc 1740 aaaaatatgg tccgctcccg gagtgggtca caaagcagac actagtgcag catcagacag 1800 gagaagaggc caagttcaca ttagccacca tggtgcagtg ggcctatgac aatgaccaca 1860 cagaggaaag cgacattgca taccactacg cactcctggc cgatgttgat gcaaatgcag 1920 cagcatggct aaacacaaat tcccaggcta aacacctaaa ggactgtgca accatggtca 1980 gacactataa gagagcaata atgtcatccc tgacgatgtc cgagtggata caccgaagaa 2040 tacagggtat agacgaggag ggtgactgga aagaaatcgg gaactttctt agatatcagc 2100 atgttgaggt gattgcattt ctgggagccc ttagagatat gctgaaaaga atacccaaaa 2160 aaacatgcat atgtattgta ggacccccca acacagggaa gtcagccttc tgcctaagtt 2220 tgctggattt ctttggggga aaggtgatat cattcacgaa ttacaagagc cagttctggc 2280 taatgccact ggcagacacc aggctagcac tgttagacga tgcgacacga cacacatggg 2340 actacatgga cgaatatatg cgaaacgcgc tggacgggaa ccagatatgt ctggacctaa 2400 aacacagggc cccgctgcag atcaggtgtc cgccattatt ggtgactagc aatatagata 2460 tacggaagga agacaggtgg cgctacctag taagcagagt atatgttgtt gaatttaaaa 2520 gcgcctttcc ctttaatgaa aatggggagc ctgtgtatca actaaccaaa gtaaattgga 2580 aatccttttt tacaaggttg tggtcacgtt tagacctaag tgatcaagag gacgaggggg 2640 aagatggaga ccctgaaaaa acgtttagat gcgatacaaa acggactaat gacattatat 2700 gaagagggca gcaaccgcct tagtgaccag gtgctgcact ggaacctttg ccggcaggaa 2760 aatgtactgc tgcactttgc acggaaatca ggggtactgc gactgggtat tcagccggtg 2820 ccacccctac gggcgaccgc cgagagggct aagcaagcca ttgaacagca gctgacgttg 2880 cagtcgctgc aggacacgcc gttcgctgat gagcagtgga cattacagga cacaagtagg 2940 gagagatgga cctcagagcc ccaggggtgc ttaaaaaaag gggcaagcgt ggtggaggtg 3000 tactttggcg gggacaaggg aaatggtatg cattatacat tatggaagga tgtgtactat 3060 gtggactgcg atgataagtg gcgcaaggtc aaaagtcagg ttgatctgca gggtatatgg 3120 ttttgggaga atggctgtaa aaggtactat gttgactttg gggaagagga taaaaagtac 3180 ggtgattccg gacgatggga tgtctatcat aacaatgaaa aaatttgccc ctccgactct 3240 gtcaccagca caacaccgcc cgcaaacctt tgtgtcacgc atcctcgaca tcctgaaggg 3300 gaccggaccg acggagacgc tagaactgca ggagctaaaa ggaaacggtc caacgaaggg 3360 caggacaggt cgccgcggcg cagggtatcc gtctcccccg cagactccac cgtcgactcc 3420 agccggaggc gcacggagga gaaggcgaca cgccgggtac agggaccgga gggaccacag 3480 ggacggggac tgggaggatc tacagctgaa gggggcttgt gcacccagcc ccacctcgct 3540 gacgcccccg tcagacgacg acttttggta tccggggaca cgggattccc cggacaaccc 3600 acttggactg agcccctgtc tgggggcctc ggacagcccg tacagctcgc gagccacccc 3660 tggtcgacga gccccctaga ctaccccatt ccgtttgccg aggccgacac cgctgccact 3720 gccagacacc cgtccatccc tgcagcagca ggagaagggc ctgaagaagg ccgtgcagca 3780 actggagaag gacgcgtacc tctgccgaga cctggtgaca caggacctgg atgcattctt 3840 cgggaagctg ggcatagttc cccgtcagtg attgtgcttt ctggaccctg caacacgctt 3900 aagtgcctca ggtacagact taagggacag cacagggacc tcttcgacaa aattagcaca 3960 acgtggtact gggctgggga gggatccgag agaatcgggg acgcaagaat acttgtcaca 4020 tttgcaaaca agcaccagag ggaagcgttt ctcgaccgtg cgcggttgcc ctccactgtg 4080 accttgcaca cctccatctt tgactagtgg aatcccattg gccaatcagc cgcggatgca 4140 tttgactgtg tgccgctgag gcttttgact gtgtgttccg tggactgttt tttatagact 4200 ttttatactt ttgtatgcac gcccacccct ccttgtcctc tgcttgccat ggtgcgcgcg 4260 cgtcgggtcc cgcgggcttc tgctgatgac ctgtatcgca cctgcaaggc cgctggcaca 4320 tgtcccgagg atgtaataaa taaaatcgag gggaaaacaa ccgctgataa aatactgcag 4380 tatggggggg ctgctatatt tttgggaggg cttgggatag gcacggccgg tggtaagggc 4440 gggtccacag ggtatgtccc cctaggggga cgtgttggga atgctgtcac agtcggcaca 4500 gggacacgtg ttgtccggcc cccagttcct gtggatgcgg tgggggctga tatcctttct 4560 gttgatgccc tgtccccctc ggttgtagcc ttggaggagt cggtggtcga gataccccgg 4620 cttggggtcg acccggcccg cgcacctggg attcctgagg ttccggcggg ggtgcctttg 4680 gactcctccg gggtctcgtc cgtggacgag ggacctgccg tcattacggt tgcggctact 4740 attgagccag tgcccagtca tccccctgtg aggacaagtg tcacctggtc ccagtactct 4800 aatcctgcat ttgatgtggt gcccggcagt gataatgctt tgggcgagac atcctcctcc 4860 agcaacattt ggatcacaca tagaaatggg ggatcctcta ttggtgagga gattcccttg 4920 caggtgtttc gcacaagcac gccacgtgac accccccccc gttttgaggc tccacgtcgg 4980 ggagggtacc ctgcacgctt cattgagaag gtgcctgtac aggacccccg ctttttaact 5040 agtcctggtg gcctggtgca atttgactat gataatcctg cctttgatcc cttggaggac 5100 tcggttctgt tcggacggcc ggaaccggga gaggttcttg cagcccctga ccctgctttc 5160 caggatgtcc gctctctggg cgctcccagg ttttctgaaa cagatagtgg ccacgttagg 5220 gttacacggc tgggcgtgcg tggcaccatg accacccgct ccggggtgca gttagggtcc 5280 caggcacact tctaccatga cattagttcc atcaccgaag gggagtggat agaactaacc 5340 ggtatggggg aacattccac cacaacggtc cttgtgtccg gcgacagcgc caatatggag 5400 gtcgttgacc tggacagcag cactgtttcg ctgcacacac tgtccagtga cgacctggag 5460 gcggttttgg ggggtgtgga ggaccttccg gccttcgagg ggttgcgtct ggagttccag 5520 agggggcgta accgcataac tctggacctc cctcttagtg ctagagccct gcctggtcca 5580 gtggacattg gtgacagtgg cgtgcacgtt gattaccccg ccattgactc tggtggtata 5640 tatggtccct atggcccgtc accaccggtc atcatagtgg atgtggcgcg gggaccctcc 5700 tcggactatt ttctgcaccc ctcattgtat gcaacacgca ggcgcaggcg caggcgcagg 5760 cgcaagcaca tataactttt ttttttcttt gcagatggcg gtgtgggtgc caaacagcca 5820 gaagctattt ctcccccccc ctgcagttac caaggtgctt aacacagatg catacattaa 5880 gagaactaat atcttttgcc atgctgacac agagcggctc ctgaccgtgg gaaacccatt 5940 tttcgagatt cttgctgagg atgacaggac tgttaaggtc cccaaggtct ctagcaatca 6000 gtatagggtc ttccgcatat cgcttcccga tcctaacgct tttgcttttg gtgaacggcc 6060 tgtgcatgat cctgataatg agaggcttgt ttggggtctg aggggtattg acgtcagccg 6120 tggtcagccg ctaggtaatg gtgttaccgg ccacccatta tttaacaaac tttttgacaa 6180 tgagaaccct gcaaagataa atactaagga gggtaaggat gctagggtca gtcttgctgg 6240 agatgttaag cagacacagg tcctcatcgt gggttgtgcc cctgcatggg gtgagcactg 6300 gaataagaca tcaccctgcg gtaaggttgt caagggcgag tgccccccta ttgagctgaa 6360 aaacacggtg attcaggatg gggatatgat tgatattggc tacggagcta tggattttcg 6420 gtcactgtcc caaaacaagt cggatgcgcc cttggacatt gttaggtcca tatgtaaata 6480 ccctgactat ctcaaaatgg ctaaggaggc tacgggtgat tctatgtttt tctttgcacg 6540 tcgcgagcaa ttgtacacac gtcacttttt cagtcgcgac ggggagagtg gggaaaagat 6600 tcctgaggat ctgtacatta agggtgaaca atcacggatg acccctggta cacaggtgta 6660 ttttggtaca caaagtggtt ccctgacctc tagcgactca caaatattta atagggctta 6720 ctggttgcag aggtcacagg gccttaacaa tggcatgtgt tggcttaatc agttgtttgt 6780 tactgttgga gacacaacac gtgggacaaa tatgaccttt agcattgcta catctgacaa 6840 tggtgattat gatgcatcta atttcaagac atatgtccga cactccgagg agtttgaact 6900 ggcttttata tttcagctct gcgtggttcc cctgtcccct gaggttcttg cccacctgca 6960 cactcttaac ccagctattc ttgataggtg gaacctcgga ctgcaggcct ctacgtcctc 7020 tgttcttgag gacaggtatc gctttcttgc ttcccttgca accccttgtc ctgacaaggt 7080 cactgtaaag gagcccgagg atccatatgc tggctactcg ttttggagtg tggacctgag 7140 tgagcgcttt tcccaggacc ttgaccagtt ccctctgggt cgtaagtttt tggcacagtc 7200 taacctgtct acgcagcgat ctgtccgtaa gcgtgcacgt tccccgtcca cgccacggac 7260 ccctaggaaa actgtaaaac gcaggaaaaa ataaaatgta atgtatgcat gttgcgtgcc 7320 tgtcttcatg cttatttttc tgtttgcacc ggcagcggtc acaccctgcg tagtacccga 7380 gcccaattga cccgtgtcca acattcccgc ccctaccgcg cccggttgcg ccccatgact 7440 aaaggtctgc acctggattt tttggctgtc tactccgacg ctaccggtgc gttgtttatg 7500 ccaacacggt gcagcgcatg ggcttgtacc aaaaggtaca gccaactggc aggattatca 7560 ttgcttggcg ccaactggcg cgcataccaa cccgttcctg ccagaccgtc accggtttgg 7620 agaccgaatt cgctgcgtca gcctacggat tagcagagga ttaagggatt atgtaaacgg 7680 gagcggtgtt cctcaccgcc ggcggtacag gtaagaacat atatatctct tattgttgtt 7740 aa 7742 //