ID EF015636; SV 1; circular; genomic DNA; STD; PRO; 5047 BP. XX AC EF015636; XX DT 31-OCT-2006 (Rel. 89, Created) DT 31-AUG-2007 (Rel. 93, Last updated, Version 2) XX DE Avibacterium paragallinarum strain A14 plasmid pYMH5, complete sequence. XX KW . XX OS Avibacterium paragallinarum OC Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; OC Pasteurellaceae; Avibacterium. OG Plasmid pYMH5 XX RN [1] RP 1-5047 RX DOI; 10.1016/j.vetmic.2007.04.024. RX PUBMED; 17485180. RA Hsu Y.M., Shieh H.K., Chen W.H., Sun T.Y., Shiang J.H.; RT "Antimicrobial susceptibility, plasmid profiles and haemocin activities of RT Avibacterium paragallinarum strains"; RL Vet. Microbiol. 124(3-4):209-218(2007). XX RN [2] RP 1-5047 RA Hsu Y.-M., Shieh H.K., Chen W.-H., Shiang J.-H., Sun T.-Y., Chang P.-C.; RT "Characterization of Avibacterium paragallinarum isolated in Taiwan"; RL Unpublished. XX RN [3] RP 1-5047 RA Hsu Y.-M., Shieh H.K., Chen W.-H., Shiang J.-H., Sun T.-Y., Chang P.-C.; RT ; RL Submitted (20-SEP-2006) to the INSDC. RL Biological Science and Technology, China Medical University, 91, Hsueh-Shih RL Road, Taichung 404, Taiwan XX FH Key Location/Qualifiers FH FT source 1..5047 FT /organism="Avibacterium paragallinarum" FT /plasmid="pYMH5" FT /strain="A14" FT /mol_type="genomic DNA" FT /db_xref="taxon:728" FT gene 297..1100 FT /gene="strA" FT CDS 297..1100 FT /codon_start=1 FT /transl_table=11 FT /gene="strA" FT /product="aminoglycoside phosphotransferase" FT /note="streptomycin resistance" FT /db_xref="GOA:A0FJZ1" FT /db_xref="InterPro:IPR002575" FT /db_xref="InterPro:IPR011009" FT /db_xref="InterPro:IPR024165" FT /db_xref="UniProtKB/TrEMBL:A0FJZ1" FT /protein_id="ABK20310.1" FT /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRR FT GELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPS FT MGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARV FT ERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIA FT NAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG" FT gene 1100..1197 FT /pseudo FT /gene="strB" FT /note="putative StrB" FT rep_origin 1202..2023 FT /note="putative" FT gene 2099..2371 FT /gene="mobC" FT CDS 2099..2371 FT /codon_start=1 FT /transl_table=11 FT /gene="mobC" FT /product="putative MobC" FT /note="mobilization protein C" FT /db_xref="InterPro:IPR008687" FT /db_xref="UniProtKB/TrEMBL:A0FJZ2" FT /protein_id="ABK20311.1" FT /translation="MKREKEIKIRLTENEYQALLERKTKARLAEWVREVALEQQPKRQP FT KVIDPALLFELNRIGVNLNQIARQCNSQKPSIDLVSVLATLHCTR" FT gene 2433..3248 FT /gene="aphA1" FT CDS 2433..3248 FT /codon_start=1 FT /transl_table=11 FT /gene="aphA1" FT /product="aminoglycoside (3') phosphotransferase APH FT (3')-Ia" FT /note="kanamycin and neomycin resistance" FT /db_xref="GOA:A0FJZ3" FT /db_xref="InterPro:IPR002575" FT /db_xref="InterPro:IPR011009" FT /db_xref="InterPro:IPR024165" FT /db_xref="UniProtKB/TrEMBL:A0FJZ3" FT /protein_id="ABK20312.1" FT /translation="MSHIQRETSCSRPRLNSNLDADLYGYKWARDNVGQSGATIYRLYG FT KPDAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTALPGK FT TAFQVLEEYPDSGENIVDALAAFLRRLHSIPVSNCPFNSDRVFRLAQAQSRMNNGLVDA FT SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI FT ADRYQDRAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF" FT rep_origin 3367..3801 FT /note="putative oriV" FT gene 4225..5016 FT /gene="sulII" FT CDS 4225..5016 FT /codon_start=1 FT /transl_table=11 FT /gene="sulII" FT /product="dihydropteroate synthase" FT /note="sulfonamide resistance" FT /db_xref="GOA:A0FJZ4" FT /db_xref="InterPro:IPR000489" FT /db_xref="InterPro:IPR006390" FT /db_xref="InterPro:IPR011005" FT /db_xref="UniProtKB/TrEMBL:A0FJZ4" FT /protein_id="ABK20313.1" FT /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADVI FT DLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAYLN FT DIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAALTG FT AGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRALTGR FT GPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAA" XX SQ Sequence 5047 BP; 1197 A; 1275 C; 1288 G; 1287 T; 0 other; ttctgactgg ttgccttgaa tcgaactaat attttttttg gtgaatcgca ttctgactgg 60 ttgcctgtca gaggcggaga atccggtgat tttgtttttc gacgtggtga cgggcatgcc 120 ttcgcgaaaa tcgcacctgc tcccgccgcg ggagctcgcg aaggccagct gcgccgcgca 180 ggtggagctg acttcatcgc acacacgagc cgcgcccctt tgcgcgacgg gctggcggta 240 ttggcggcgc tgaaagaaac cgcaagaatt cgttatcaga aactgaagga actccattga 300 atcgaactaa tatttttttt ggtgaatcgc attctgactg gttgcctgtc agaggcggag 360 aatccggtga ttttgttttt cgacgtggtg acgggcatgc cttcgcgaaa atcgcacctg 420 cttcccgccg cggtgagctc gctggagagc gtgaccgcct catttggctc aaaggtcgag 480 gtgtggcttg ccccgaggtg atcaactggc aggaggaaca ggagggtgca tgcttggtga 540 taacggcaat tccgggagta ccggcggctg atctgtctgg agcggatttg ctcaaagcgt 600 ggccgtcaat ggggcagcaa cttggcgctg ttcacagcct atcggttgat caatgtccgt 660 ttgagcgcag gctgtcgcga atgttcggac gcgccgttga tgtggtgtcc cgcaatgccg 720 tcaatcccga cttcttaccg gacgaggaca agagtacgcc gcagctcgat cttttggctc 780 gtgtcgaacg agagctaccg gtgcggctcg accaagagcg caccgatatg gttgtttgcc 840 atggtgatcc ctgcatgccg aacttcatgg tggaccctaa aactcttcaa tgcacgggtc 900 tgatcgacct tgggcggctc ggaacagcag atcgctatgc cgatttggca ctcatgattg 960 ctaacgccga agagaactgg gcagcgccag atgaagcaga gcgcgccttc gctgtcctat 1020 tcaatgtatt ggggatcgaa gcccccgacc gcgaacgcct tgccttctat ctgcgattgg 1080 accctctgac ttggggttga tgttcatgcc gcctgttttt cctgctcatt ggcacgtttc 1140 gcaacctgtt ctcattgcgg acaccttttc cagcctcgtt tggaaagttt cattgccagt 1200 aataccaatg ctttagaaag aaaaagggat cgaacttttg acattcgatc cctttttctg 1260 taatctgttt cgtgcgttct ttgctaagat acagacccta gacaagtcat atcttagcaa 1320 agggtagcta gtaatgcaag agattgcgaa gcgtccctac taccaaaaaa ccattcaacg 1380 acgtaaacag acaaacgcaa accttaaatt agacggtctt cagctcggac ttcggaagaa 1440 taaacaggcg tagaagtgat aacgttctta atacgaaaat taagctctgt ctccgtttcg 1500 tgctacggtt agaaaggcga aagccccaag aaatacaagc acacctgata agcgagattt 1560 aaggataaca gcgaaattca atagggtctg aatttccaaa ctaggttaaa tgccacgacg 1620 ttttattgtt gccccattca agcaacattt gagaaccgaa tagaaatctt ttagtaaaaa 1680 gcgttctttt ttgggtcagc ggttaatgtg gacggtttaa cggtttttcc cctgcgggtc 1740 gtattggaaa gccattgaaa agctgatgga taactctgcg agttacccac gagctttcca 1800 acagctttcc aacactaaaa acctaccgcc cacaataacc acttccctaa taataaaatt 1860 tttttatttt tattttggtt caaaggctca cgatgttcgc ctaataaaac gaagtcgcct 1920 atcggctccg ctgattttta tatatcactc tcggggcttt tggtgtacta ttgtcttttg 1980 taatagcaag gacacaaaaa gggtactctt cgagtttcct ttttgacctt gcaaaagggc 2040 tttgccccct tgacccccga ccgctttcag cggtcaaaat agaagaacgg acaccattat 2100 gaaacgtgag aaagagataa aaatcaggct caccgaaaac gagtatcaag ccttgttaga 2160 gagaaaaacg aaagcaaggc ttgcggagtg ggttcgggaa gttgccctgg aacagcaacc 2220 taagcgacag ccgaaagtaa tcgaccctgc gttactgttc gagctgaacc gcataggcgt 2280 aaacctgaac caaatcgccc gacaatgcaa cagtcaaaag ccgagcattg accttgttag 2340 cgtgttggcg accttgcatt gcacaagata aaaatatatc atcatgaaca ataaaactgt 2400 ctgcttacat aaacagtaat acaaggggtg ttatgagcca tattcaacgg gaaacgtctt 2460 gctcgaggcc gcgattaaat tccaacctgg atgctgattt atatgggtat aaatgggctc 2520 gcgataatgt cgggcaatca ggtgcgacaa tctatcgatt gtatgggaag cccgatgcgc 2580 cagagttgtt tctgaaacat ggcaaaggta gcgttgccaa tgatgttaca gatgagatgg 2640 tcagactaaa ctggctgacg gcatttatgc ctcttccgac catcaagcat tttatccgta 2700 ctcctgatga tgcatggtta ctcaccactg cgctccccgg gaaaacagca ttccaggtat 2760 tagaagaata tcctgattca ggtgaaaata ttgttgatgc gctggcagcg ttcctgcgcc 2820 ggttgcattc gattcctgtt agtaattgtc cttttaacag cgatcgcgta tttcgtctcg 2880 ctcaggcgca atcacgaatg aataacggtt tggttgatgc gagtgatttt gatgacgagc 2940 gtaatggctg gcctgttgaa caagtctgga aagaaatgca taagcttttg ccattctcac 3000 cggattcagt cgtcactcat ggtgatttct cacttgataa ccttattttt gacgagggga 3060 aattaatagg ttgtattgat gttggacgag tcggaatcgc agaccgatac caggatcgtg 3120 ccatcctatg gaactgcctc ggtgaatttt ctccttcatt acagaaacgg ctttttcaaa 3180 aatatggtat tgataatcct gatatgaata aattgcagtt tcatttgatg ctcgatgagt 3240 ttttctgata gttagtcttt gtagagacac aaacctgaaa ttccggacac cgcgcttcag 3300 gacatctccc tggacgccga tatctggcag tatccggacg gtactatcga acgccgggcc 3360 aacggtactc ccctgccctt tatgactgac gaccggctat ttcacccacg cacttctcca 3420 tgaaatttag catcgtcgtg tcacgccccc aaacctgcaa acccagcagg ggcgggggct 3480 ggcggggtgt tggaaaaatc catccatgat tatccaagaa taatccacta ggcgcggtta 3540 tcagcgccct tgtggggcgc tgctgccctt gcccaatatg cccggccaga ggccggataa 3600 ctgatctatc cgctgcgcta ggctacacac ccgcccccac cgctgcgcgg cagggggaaa 3660 ggcgggcaaa gcccgctaaa ccccacacca aacccgcagt aatccgctgg agcgatttta 3720 gccgctttag cggccttttc cctacccgaa gggtgggggc ggtgtgcagc cccgaagggg 3780 ccatttagcg gccatttcag cggctgtgat gctgatagtg gccgtggtgt cccttacgat 3840 atgggagtaa tcaggcttgc cgaaaagggc tttgagtgga tctgtcatgg ctgatctcca 3900 aacatatcaa gcgtgtctgt atcccactct attgtaaaca agacattttt atcttttata 3960 ttcaatggct tattttcctg ctaattggta atatcatgaa aaataccatg ctcagaaaag 4020 gcttaacaat attttgaaaa attgcctact gagcgctgcc gcacagctcc ataggccgct 4080 ttcctggctt tgcttccaga tgtatgctat tctgctcctg cagctaatgg atcaccgcaa 4140 acaggttact cgcctgggga ttccctttcg acccgagcat ccgtatgaga ctcatgctcg 4200 attattatta ttatagaagc ccccatgaat aaatcgctca tcattttcgg catcgtcaac 4260 ataacctcgg acagtttctc cgatggaggc cggtatctgg cgccagacgc agccattgcg 4320 caggcgcgta agctgatggc cgagggggca gatgtgatcg acctcggtcc ggcatccagc 4380 aatcccgacg ccgcgcctgt ttcgtccgac acagaaatcg cgcgtatcgc gccggtgctg 4440 gacgcgctca aggcagatgg cattcccgtc tcgctcgaca gttatcaacc cgcgacgcaa 4500 gcctatgcct tgtcgcgtgg tgtggcctat ctcaatgata ttcgcggttt tccagacgct 4560 gcgttctatc cgcaattggc gaaatcatct gccaaactcg tcgttatgca ttcggtgcaa 4620 gacgggcagg cagatcggcg cgaggcaccc gctggcgaca tcatggatca cattgcggcg 4680 ttctttgacg cgcgcatcgc ggcgctgacg ggtgccggta tcaaacgcaa ccgccttgtc 4740 cttgatcccg gcatggggtt ttttctgggg gctgctcccg aaacctcgct ctcggtgctg 4800 gcgcggttcg atgaattgcg gctgcgcttc gatttgccgg tgcttctgtc tgtttcgcgc 4860 aaatcctttc tgcgcgcgct cacaggccgt ggtccggggg atgtcggggc cgcgacactc 4920 gctgcagagc ttgccgccgc cgcaggtgga gctgacttca tccgcacaca cgagccgcgc 4980 cccttgcgcg acgggctggc ggtattggcg gcgtgaatcg aactaatatt ttttttggtg 5040 aatcgca 5047 //