ID DQ859906; SV 2; circular; genomic DNA; STD; PRO; 5594 BP. XX AC DQ859906; XX DT 20-AUG-2006 (Rel. 88, Created) DT 09-MAR-2010 (Rel. 104, Last updated, Version 4) XX DE Bacteroides fragilis strain P35 plasmid pBFP35, complete sequence. XX KW . XX OS Bacteroides fragilis OC Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; OC Bacteroides. OG Plasmid pBFP35 XX RN [1] RP 1-5594 RX DOI; 10.1016/j.plasmid.2009.12.002. RX PUBMED; 20026106. RA Soki J., Wareham D.W., Ratkai C., Aduse-Opoku J., Urban E., Nagy E.; RT "Prevalence, nucleotide sequence and expression studies of two proteins of RT a 5.6kb, class III, Bacteroides plasmid frequently found in clinical RT isolates from European countries"; RL Plasmid 63(2):86-97(2010). XX RN [2] RP 1-5594 RA Soki J., Ratkai C., Nagy E.; RT ; RL Submitted (19-JUL-2006) to the INSDC. RL Institute of Clinical Microbiology, University of Szeged, Somogyi Bela ter RL 1., Szeged H-6725, Hungary XX RN [3] RC Sequence update by submitter RP 1-5594 RA Soki J., Ratkai C., Nagy E.; RT ; RL Submitted (08-JUL-2008) to the INSDC. RL Institute of Clinical Microbiology, University of Szeged, Somogyi Bela ter RL 1., Szeged H-6725, Hungary XX CC On Jul 22, 2008 this sequence version replaced gi:112293925. XX FH Key Location/Qualifiers FH FT source 1..5594 FT /organism="Bacteroides fragilis" FT /plasmid="pBFP35" FT /strain="P35" FT /mol_type="genomic DNA" FT /note="clinical isolate" FT /db_xref="taxon:817" FT CDS join(5328..5594,1..504) FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical lipoprotein" FT /note="orf1" FT /db_xref="UniProtKB/TrEMBL:Q0MR93" FT /protein_id="ABI15084.1" FT /translation="MKKVMFMFISLLTVLGVCSCNDNEVIEPVVSDSVSDMEVLSRFVD FT VNEITNEYYFNENKKTRALSYVTGSDWQDLEKVSPLSIEKYKNNLQVLNAQVASAISNP FT NTAYVVFSVNGKTLVKKVKEDANFDFSVFRDVVTETRAVLPSLSINGGSQSTTGVFYDS FT SRTLKMQVDLNASIQNNYYFFEVLNPNAKPSPDDNITTPESVAFSGTGPLWSNTFTWTS FT YWDANVPGQGFKWEFKGKGTTPSFGFIANCTFSR" FT repeat_region join(5592..5594,1..9) FT /rpt_unit_seq="aacctgcaggtt" FT /note="IR5pal; palindromic" FT repeat_region 5..16 FT /rpt_type=DIRECT FT /rpt_unit_seq="aggttttaaatg" FT /note="DR1" FT repeat_region 426..437 FT /rpt_type=DIRECT FT /rpt_unit_seq="aggttttaaatg" FT /note="DR1" FT repeat_region 526..539 FT /rpt_type=INVERTED FT /rpt_unit_seq="gaattgcacttctc" FT /note="IR1" FT repeat_region complement(546..559) FT /rpt_type=INVERTED FT /rpt_unit_seq="gaattgcacttctc" FT /note="IR1" FT gene complement(574..1824) FT /gene="mobAP35" FT CDS complement(574..1824) FT /codon_start=1 FT /transl_table=11 FT /gene="mobAP35" FT /product="NBU/pMV158-type mobilization protein" FT /db_xref="UniProtKB/TrEMBL:B4UUJ3" FT /protein_id="ACF57708.1" FT /translation="MAKTCIRVEACNIGSSERHNLRSKELDYIRPELTHRNEQWVECSI FT AEVHRDITEKYKEATGQGLQKKATPIREGVIVISEETTIQQLQDLAEKLEERFGVHAFQ FT IYTHKDEGANVWDGKEEAWKPNYHAHMIFDWTDGHTGKTVKLNRHDMAEMQTITAECLN FT MERGVSSDKKHLSAMQYKNKMETEKAEQLQKDIEQLNRAYTAGTEKITTVQKELSTAQK FT ELNSMKTDIHINEAKEAAAKAGKTVFNAVTSVFNVGEVKRQAKEIETLKKENYNLSFKN FT QNLEGQLRTNNIEMRRVQETTDRQIKAEASKLKPITNLFPEMENAQENIEELQTMGIQN FT KDIRQLLIGKEIYYTGNLYDKDKRKSYQVKNVKIDISKSQNGITTIWLNNIHFKNFLKE FT LWNTLQKTLDNGNWLHR" FT repeat_region 953..964 FT /rpt_type=DIRECT FT /rpt_unit_seq="ttggttcttaat" FT /note="DR2" FT repeat_region 1813..1824 FT /rpt_type=INVERTED FT /rpt_unit_seq="tgtctttgccat" FT /note="IR2" FT repeat_region 2174..2186 FT /rpt_type=INVERTED FT /rpt_unit_seq="tgttataacttta" FT /note="IR3" FT repeat_region complement(2215..2227) FT /rpt_type=INVERTED FT /rpt_unit_seq="tgttataacttta" FT /note="IR3" FT gene 2230..2478 FT /gene="mazP35" FT CDS 2230..2478 FT /codon_start=1 FT /transl_table=11 FT /gene="mazP35" FT /product="putative plasmid stability protein" FT /note="antitoxin; similar to MazE proteins" FT /db_xref="InterPro:IPR007159" FT /db_xref="UniProtKB/TrEMBL:B4UUJ4" FT /protein_id="ACF57709.1" FT /translation="MVTNIIQIGNSKGIILPSEVLKQLRLSLKSAVSISLDGNNIVIKA FT QPRQGWAEAAKRAHENGDDELLIPDVFEDEKFEDWTW" FT gene 2472..2792 FT /gene="mazFP35" FT CDS 2472..2792 FT /codon_start=1 FT /transl_table=11 FT /gene="mazFP35" FT /product="putative plasmid partition protein" FT /note="toxin; similar to MazF proteins" FT /db_xref="GOA:B4UUJ5" FT /db_xref="InterPro:IPR003477" FT /db_xref="InterPro:IPR011067" FT /db_xref="UniProtKB/TrEMBL:B4UUJ5" FT /protein_id="ACF57710.1" FT /translation="MVEQYEVYWVELDPTRGGEMAKTRPCVVVTPSDLNMYLTTVVIVP FT ITSTIRNYPYRVLCSVAGREGEIATDQIRTVDKSRLKRKIGDLNFSEIKRLREVFQQMF FT CE" FT repeat_region complement(2529..2540) FT /rpt_type=INVERTED FT /rpt_unit_seq="tgtctttgccat" FT /note="IR2" FT CDS 2829..3227 FT /codon_start=1 FT /transl_table=11 FT /product="putative protein" FT /note="orf4; similar to Bacteroides and Parabacteroides FT uncharacterized hypothetical proteins" FT /db_xref="UniProtKB/TrEMBL:B4UUJ6" FT /protein_id="ACF57711.1" FT /translation="MKPTDYIEWDNLKDIPFFLCQVVEDREKQDLDIYYLGKRVLHDYD FT HVGHYLRTAVILFRRVKSRTADWVNLRNLWTLRNCVRENYNHGIGMNDLIFGENFDGDN FT LDTLTPLTKKRFDFLCKRIKELDPYATI" FT repeat_region 3252..3263 FT /rpt_type=DIRECT FT /rpt_unit_seq="ttgtctttgtgt" FT /note="DR3" FT repeat_region 3381..3392 FT /rpt_type=DIRECT FT /rpt_unit_seq="ttgtctttgtgt" FT /note="DR3" FT CDS complement(3441..3710) FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="orf3" FT /db_xref="UniProtKB/TrEMBL:B4UUJ8" FT /protein_id="ACF57712.1" FT /translation="MWLSFGIRPAKNEHKRLLILKIQSPLVTAFGLSFFLSPKVGNSFQ FT TAKHHSKNLHITSQKAFTTKLSSLSSMGARPHSPDCAILTQIHY" FT repeat_region 3566..3578 FT /rpt_unit_seq="gtttggcggtttg" FT /note="DYR1; dyad" FT gene 3722..4771 FT /gene="repAP35" FT CDS 3722..4771 FT /codon_start=1 FT /transl_table=11 FT /gene="repAP35" FT /product="rolling-cycle type replication protein" FT /db_xref="GOA:B4UUJ7" FT /db_xref="InterPro:IPR000989" FT /db_xref="UniProtKB/TrEMBL:B4UUJ7" FT /protein_id="ACF57713.1" FT /translation="MCKDRTNITNCKESPLKNGSDSLKKKAKVKIISHNFTRKLSEKNP FT DSKLMKAYMDAHVCSNVYTVQGGKAHSHYCHRAFCPICQRIQTAQNVKKFLPVMKYLAS FT EGREFYFVTLTLQNCVTDDARVLRDFMRRCNRMWADGIRTKHKFRSLGISGVIKKECTY FT HVVKKDLFSFHYHFHIIVDSLEAAKYVVAQWKKLHGSTVADARFQKYKKIEDFENAAIE FT VFKYASKASVSKSKGRDGKKKIQINYKALDMIYTAMHGMQRMSSFGQFRTMIGDEALND FT FRDEDLVLNIEGLNVEDGCYTWYMSVKDKVADWYNMETGEALCCYKVTRKDELLQDIYL FT DEDIFPNSG" FT repeat_region 4344..4356 FT /rpt_type=DIRECT FT /rpt_unit_seq="agaaatataagaa" FT /note="DR4" FT repeat_region 4580..4591 FT /rpt_type=DIRECT FT /rpt_unit_seq="ttggttcttaat" FT /note="DR2" FT CDS complement(4775..5353) FT /codon_start=1 FT /transl_table=11 FT /product="putative integral membrane protein" FT /note="orf2" FT /db_xref="UniProtKB/TrEMBL:Q0MR94" FT /protein_id="ABI15085.2" FT /translation="MNINITFFINPPFLKLINKGFAQKYKISPIFALNIKYLTMNRIIH FT ISLLISTVSLFLISNTGCVEKQGYYNHGEESIISLICDITWAGKKTTDENGSVWQGTYK FT FNKNGTYTRTNIEIDKQGNKKEANIYGQWSFGDPSFSTIYFGGEHYWDIDELTKNKFSF FT YDRSGKFGDPFMNREYIELTPYQENNTTN" FT repeat_region 5239..5250 FT /rpt_type=OTHER FT /rpt_unit_seq="ttaaatatttaa" FT /note="IR4pal; palindromic" FT repeat_region 5578..5590 FT /rpt_type=DIRECT FT /rpt_unit_seq="agaaatataagaa" FT /note="DR4" XX SQ Sequence 5594 BP; 1484 A; 921 C; 1295 G; 1894 T; 0 other; ctgcaggttt taaatgctca agtggcaagt gctatttcaa atcctaatac cgcttatgtt 60 gttttttctg taaatggaaa gactttggtt aaaaaggtga aggaggatgc taattttgat 120 ttttcagtat ttagggatgt tgtaacggaa acgagggctg ttctcccttc tttgagtatt 180 aatggaggtt ctcaaagcac taccggagtt ttttacgatt ccagtcgtac tttaaagatg 240 caagttgatt tgaatgcttc aatacagaat aattattatt tctttgaagt attaaatcct 300 aatgctaaac caagtccgga tgataatata acgacacctg aaagtgttgc ttttagtgga 360 actggaccgt tatggagtaa cactttcact tggacttcgt attgggatgc aaatgtacct 420 ggtcaaggtt ttaaatggga gtttaaagga aaaggtacta ctccttcttt tggttttata 480 gctaattgca cctttagtcg ttaaaaaatg aacgggattt aatttgaatt gcacttctca 540 aaaaagagaa gtgcaattct ttttagtgtc tttctatcgg tgtagccagt taccgttatc 600 taaagtcttt tgtagtgtat tccaaagttc tttaagaaag tttttaaagt ggatgttatt 660 tagccaaatt gtagtaatac cattctgact tttggagata tctattttca cgtttttaac 720 ttggtatgat tttctcttgt ctttatcgta aaggtttcca gtgtagtata tttcctttcc 780 aataagaagt tgtcggatat ctttattttg tattcccata gtttggagtt cctctatatt 840 ttcctgtgca ttttccattt ccggaaaaag gttggttatg ggttttagtt tggatgcttc 900 tgcctttatc tgtctgtcgg ttgtttcctg tacccttcgc atctcgatgt tgttggttct 960 taattgtcct tctaaatttt gattcttgaa tgagaggtta taattttctt ttttgagggt 1020 ttcaatttct ttggcttgtc gttttacttc ccctacatta aagacgcttg taacggcatt 1080 aaatacggtt tttccggctt ttgcggcagc ttctttggct tcgttgatgt gtatgtcggt 1140 tttcatgctg tttagctctt tttgtgccgt actaagttcc ttttggactg tggtgatttt 1200 ctcggttccg gcagtgtatg ccctgtttag ttgctcgatg tctttttgaa gttgttcagc 1260 tttctctgtt tccattttgt ttttgtattg catggccgac aagtgtttct tgtctgaaga 1320 aactccacgt tccatgttga gacactctgc tgttatagtc tgcatctccg ccatgtcgtg 1380 tctgttcagc tttacagttt ttcctgtatg gccgtccgtc cagtcaaaga tcatgtgcgc 1440 atgatagttc ggtttccatg cttcttcctt tccgtcccat acgtttgcgc cttcatcctt 1500 atgggtgtag atttggaagg cgtgcactcc aaagcgttct tccagttttt cggccaagtc 1560 ttgaagctgc tggattgtgg tttcctcgct gattactatt accccttccc ggattggggt 1620 agctttcttc tgtaatcctt gtccggtggc ttccttgtat ttttccgtta tgtcccggtg 1680 tacttcggca atggaacatt ctacccactg ttcgttgcgg tgtgtgagtt ccggacggat 1740 gtagtcgagc tccttgcttc ttaagttgtg acgttccgag ctgcctatat tgcaggcttc 1800 cactctgata catgtctttg ccatatcttt aggttttagg tgtgtatgtc tgtttagaag 1860 atgtggcgtg aaacgtcaca tcgcacgggg tcgaggggac acccctcgca cacaacccct 1920 ttaggggtta tagtgtgcta taaccttttg caaaggtaag ccttccggac gggatttgca 1980 agcgctctgc catgtgttcc ggatgtgctt gggaacagaa gccggacaaa agggaaaagg 2040 acacaaggca caataaaaaa tcatcggtcg gggagcgctg cacggcaagg gggtgcacca 2100 acactcccga cgagtgcagc cattgacagg gttctcggtg aaaatggaaa aaagttgttt 2160 ttccttttgt tattgttata actttacata tatttgtatc gtgataatca attataaagt 2220 tataacatta tggtaacgaa tattattcag attggaaaca gcaaggggat aatacttcct 2280 tccgaagtat tgaaacagtt gcgtttgtcc ttgaaatcgg ctgtgagcat ttctttggac 2340 gggaacaata ttgtgataaa ggcacaacca cggcagggat gggcggaagc tgccaaacgt 2400 gcccatgaga atggggatga tgagttgctt atccctgatg tgtttgagga tgaaaagttt 2460 gaggattgga catggtagaa cagtatgaag tgtattgggt agagttagac cctacccgtg 2520 ggggtgaaat ggcaaagaca cggccatgtg tagttgtcac tccttcagat ttgaatatgt 2580 accttacaac agtagtcatt gttccgataa cctcaacgat aagaaattat ccttaccggg 2640 ttctgtgttc tgtagccggg cgtgaaggag agatagccac tgatcaaatt cgcacggtgg 2700 ataaaagccg gctgaaaaga aagattggag atttgaattt cagtgagata aaaaggttac 2760 gtgaagtgtt tcagcaaatg ttctgtgaat aatggaaagt acggaaagaa aaatgcaaat 2820 aagacattat gaaaccaact gactacatcg aatgggataa cctgaaggat attccattct 2880 tcctctgtca agtagtcgag gacagagaaa aacaagattt ggatatttac tatttgggca 2940 aacgtgtctt gcacgattac gaccatgtgg ggcactattt gcggactgcc gttatcttgt 3000 tccgcagggt aaagagccgc acagcagact gggtaaacct gcgtaacctt tggacgctgc 3060 gcaactgtgt gcgtgagaac tacaatcacg gcataggaat gaacgacctt atttttgggg 3120 agaatttcga tggagataat ctcgatacgc ttacaccact tacaaagaaa cgctttgatt 3180 ttttgtgtaa gcggattaag gaacttgacc catatgcaac tatttaacac tccattgagt 3240 gaaggcaggg tttgtctttg tgtgctcccc ctttggggga cgggaggggg ataagaaaaa 3300 aaataccacc ggagatgtcg gatatccgtc aattcactcc ggtgtttttt ttgcaactct 3360 cccgtatcgc tcggcaaggg ttgtctttgt gtacggcaaa gatagttttt tttccggaag 3420 tatctttgtc tgttgtggat ttagtagtgt atttgtgtca gaattgcgca gtcgggggaa 3480 tgggggcgag cccccatact agataaacta gaaagtttcg tggtaaatgc tttttgactt 3540 gttatatgta ggttttttga atgatgtttg gcggtttgga atgaattacc tacttttggg 3600 ctgagaaaaa acgaaagccc gaaggcagta accaacgggc tttgtatttt aagaattagc 3660 aatcgtttgt gttcgttctt ggcggggcgg ataccaaacg aaagccacat caaaatttca 3720 tatgtgcaaa gatagaacaa atataaccaa ctgcaaagaa agtccgttaa aaaacggttc 3780 tgatagtctt aaaaaaaagg ctaaagtaaa aatcatatcc cataatttta ctcgaaaact 3840 ttcggaaaag aatccagata gtaagctgat gaaagcatat atggatgccc atgtgtgttc 3900 aaatgtttat actgtgcagg gaggtaaggc gcattcccat tattgtcatc gggctttttg 3960 tcctatttgt cagcgtattc aaacggcaca aaatgtaaag aagttccttc cggttatgaa 4020 gtatttggct tcggaaggca gagagtttta ttttgtgacg cttaccttgc aaaattgtgt 4080 aaccgatgat gcaagggtat tgcgagattt catgcgtaga tgtaaccgga tgtgggctga 4140 tggtataagg acgaaacaca agtttcgttc acttggtatt tcgggggtga ttaagaagga 4200 gtgtacctat catgtagtaa aaaaggattt gttttcgttc cattatcatt ttcatattat 4260 tgttgattca ttggaagctg caaaatatgt agtagcccaa tggaagaaat tgcatggtag 4320 tacggttgct gatgcccgtt ttcagaaata taagaagata gaggattttg aaaatgcagc 4380 gatagaggtt tttaagtatg cttcaaaggc ttctgtctca aaatcgaaag gtcgtgacgg 4440 taaaaaaaag attcagataa attataaggc tttggatatg atttatactg ccatgcatgg 4500 gatgcagcgc atgagtagtt tcggacagtt ccgcaccatg atcggagatg aagcgttgaa 4560 tgattttaga gatgaggatt tggttcttaa tattgaggga ttgaatgttg aagatggttg 4620 ttatacttgg tatatgtctg tgaaagataa ggtggctgat tggtataata tggaaactgg 4680 ggaggcattg tgttgttata aggtcacccg gaaggatgaa cttttgcagg atatttattt 4740 agatgaggat atttttccta atagtgggta gttgttagtt tgttgtattg ttttcttggt 4800 atggtgtgag ttctatgtat tctctattca tgaaaggatc gccaaatttt ccacttctgt 4860 catagaagga aaatttgttt ttagttagct cgtctatgtc ccagtaatgt tctccaccaa 4920 aataaatggt actgaaactt ggatcaccga atgaccattg tccgtagata ttggcttctt 4980 ttttatttcc ttgtttgtcg atttctatat ttgtacgggt atatgttccg tttttattga 5040 atttgtatgt accttgccag acactgccgt tttcgtctgt tgttttttta ccagcccatg 5100 taatatcaca aattaatgag attatgcttt cttctccatg gttgtagtat ccttgttttt 5160 caacacatcc ggtgtttgaa ataagaaaaa gtgatactgt tgaaataagt aaagagatat 5220 gtattattct attcatagtt aaatatttaa tattcaatgc aaaaatagga gaaattttat 5280 atttttgggc gaaaccttta tttattaact ttaaaaaagg aggatttatg aaaaaagtaa 5340 tgtttatgtt catcagtcta ctgactgttt tgggtgtttg ttcgtgtaat gataatgaag 5400 taatagaacc tgtggttagt gattctgtat ctgatatgga ggtcttatct cgttttgttg 5460 atgtaaatga gattacaaat gaatactatt tcaatgagaa taagaaaacg agggcgttgt 5520 cttatgtaac aggttcggat tggcaggatt tagaaaaagt tagtcctttg agtattgaga 5580 aatataagaa taac 5594 //