ID DQ518172; SV 1; circular; genomic DNA; STD; PRO; 4276 BP. XX AC DQ518172; XX DT 29-MAY-2006 (Rel. 87, Created) DT 19-SEP-2007 (Rel. 93, Last updated, Version 3) XX DE Campylobacter coli RM2228 plasmid pCC2228-3, complete sequence. XX KW . XX OS Campylobacter coli RM2228 OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Campylobacteraceae; Campylobacter. OG Plasmid pCC2228-3 XX RN [1] RP 1-4276 RX DOI; 10.1016/j.plasmid.2006.08.005. RX PUBMED; 17064774. RA Miller W.G., Heath S., Mandrell R.E.; RT "Cryptic plasmids isolated from Campylobacter strains represent multiple, RT novel incompatibility groups"; RL Plasmid 57(2):108-117(2007). XX RN [2] RP 1-4276 RA Miller W.G., Mandrell R.E.; RT ; RL Submitted (26-APR-2006) to the INSDC. RL Produce Safety and Microbiology Research Unit, USDA, ARS, WRRC, 800 RL Buchanan St., Albany, CA 94710, USA XX DR StrainInfo; 692414; 0. XX FH Key Location/Qualifiers FH FT source 1..4276 FT /organism="Campylobacter coli RM2228" FT /plasmid="pCC2228-3" FT /strain="RM2228" FT /mol_type="genomic DNA" FT /db_xref="taxon:306254" FT gene 165..254 FT /gene="repA" FT CDS 165..254 FT /codon_start=1 FT /transl_table=11 FT /gene="repA" FT /product="RepA" FT /note="replication protein" FT /db_xref="UniProtKB/TrEMBL:Q19N23" FT /protein_id="ABF69291.1" FT /translation="MKQHSKRLKVALYLNFRFFKLKVAIFFVK" FT gene 301..1377 FT /gene="repC" FT CDS 301..1377 FT /codon_start=1 FT /transl_table=11 FT /gene="repC" FT /product="replication initiation protein" FT /db_xref="GOA:Q19N22" FT /db_xref="InterPro:IPR000525" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q19N22" FT /protein_id="ABF69292.1" FT /translation="MQTSKKTNKKRIQKAVVTQNNRFVYAKYDMNTNELKMFMWIVAQI FT NSQKDSLFQVCEMPLSEIFEVLNHQSEENYTYIKNLIDNMGKKTYIEDFKLLDEMTMKE FT VEIHRVMPLFQFIEYKKGASSISYRLNDSLMQYLLDQKRDFTQLKFNDIQQMKSAYSIR FT IYNMLVCELKQNKQSLKINLAVLQNLLEVPKTLLEYKHFNVKVLKQAEKDINGKSNLVL FT LEIKTYKTGRKITDLEFIFDYKNNDKRIAQEKAKQEKFFTRLKEILSNYIGKSIYDERF FT GEMIVTHYDHNEADNKISIIAQRKSDDKFVAFGVKNFKDIQSLEKLKDKAEELFYLDKQ FT RVINAKEAQNYKNLFTMD" FT misc_feature 1744..1840 FT /note="AT-rich region" FT repeat_region 1931..1949 FT /rpt_type=DIRECT FT /note="iteron I" FT repeat_region 1964..1982 FT /rpt_type=DIRECT FT /note="iteron II" FT repeat_region 1985..2003 FT /rpt_type=DIRECT FT /note="iteron III" FT stem_loop 2272..2305 FT gene 2768..4276 FT /gene="mob" FT CDS 2768..4276 FT /codon_start=1 FT /transl_table=11 FT /gene="mob" FT /product="mobilization protein" FT /db_xref="InterPro:IPR005094" FT /db_xref="UniProtKB/TrEMBL:Q19N21" FT /protein_id="ABF69293.1" FT /translation="MICKFFKTQKGGGVSSVDYMLNERVNQGTARILKGDEFLTREFIK FT SMSQKHKTCVGVLSFEEKNIDENTKKEIMQSFENALLTPAMQGRYNILWIEHTDKGRLE FT LNFIIPKMDLESKKSFNPYYHPIDNKRIDFWRDFVNLCYGFTNPKDPSKEQTLQGSKKE FT KELFKDYEALDKILHKQVANKIINSRDELIYFLEQNNIEVTRKGSDYLSIKLPESKKAK FT RFKGGIYNEQFRSFEKLRDLRTEKESRAREYQQRDIKSELERTKRELDKFIQSKDEYYR FT ETIRKFNERLQGKTRKFNRKNGEIQLQDTANEIQNIQPSNEFFSGNAYDDDFKRSCMVS FT VDKTLSDQQGANNKIEQRENLYTNAERECDSARQLLLPTTRLEKAENDDFRIRINSRNR FT EITGQDNRISTSRDEITRDNQERTNSIRERFGSYEKQTQQLRAGFQGFETENTRNGAIK FT RARIETIRDIIQAKYTELRERIRNSFKKTINKARQIKRDFGYSR" XX SQ Sequence 4276 BP; 1745 A; 626 C; 696 G; 1209 T; 0 other; tatatggaaa aatgggggct gaaatttgat aaacagacat tttacccgac aaaaaccacc 60 ttaaaggtaa ctaaaattaa taaatataag ttactattaa ctaaaattgc gatataatta 120 ttttacccct agagataggg gtaatttgac caaaaggaca tactatgaag caacatagta 180 agcgtcttaa agtagcatta tatctaaatt ttaggttttt taaacttaaa gtggcgatct 240 tttttgtgaa ataagaccgc aggggttaag cccctgtcct tttggcctta aaggctaatt 300 atgcaaacat caaaaaaaac taacaaaaaa agaattcaaa aagccgtagt aactcaaaat 360 aatcgctttg tttatgctaa atacgatatg aatactaatg aacttaaaat gtttatgtgg 420 atcgtcgcac aaataaacag ccaaaaagat agcttatttc aagtttgtga aatgccatta 480 agtgaaatat ttgaagtttt aaatcatcaa agcgaggaaa actacactta tataaaaaat 540 ttaattgata atatgggaaa aaagacctat atcgaggact ttaaattgct tgatgagatg 600 acaatgaaag aagttgaaat tcatagagtt atgccgttat ttcaattcat agagtataag 660 aaaggggctt caagtattag ttatagatta aatgatagcc ttatgcaata cttgttagac 720 caaaaaagag attttaccca gttaaaattt aacgatatcc agcaaatgaa atcagcttat 780 agcataagaa tttataatat gcttgtttgt gagttaaaac agaacaaaca aagccttaaa 840 atcaatcttg cagtattgca aaacctttta gaagtgccaa aaactctttt agaatacaag 900 cattttaatg ttaaagtttt aaaacaagcc gaaaaagata taaatggcaa atcaaatctt 960 gttttactag aaataaaaac ttacaaaaca gggcgtaaaa tcacagattt agagtttatc 1020 tttgattata agaacaacga taaacgcatc gcacaagaaa aagccaaaca agagaaattt 1080 tttaccaggc taaaagaaat actaagcaat tatataggca aatcaattta tgatgaacgc 1140 tttggtgaaa tgatcgtaac tcattacgac cataacgaag ccgataataa aatttcaatc 1200 atcgcacaaa gaaagagcga tgataaattt gtggcttttg gtgttaaaaa cttcaaagac 1260 atacaaagct tagagaagtt aaaagacaaa gctgaagaac ttttttactt agataagcaa 1320 agagtaatta acgccaaaga agcacaaaac tacaaaaatc ttttcacaat ggattaagca 1380 gatatatcta aaagctgatc ttttttatta tctgcatttg tagaattgct aatatcttta 1440 tctttcagcc ttgtttcttc ttccttttca gctttagcct ctacttttgc ttttttttct 1500 tgaaatttca aagaaaaatc tatagtttgt ctatttacct cactcttgcc aaaatttgtg 1560 gtatcaataa caccacaagg tgttacaagt atcatttaca ttgtcctctt agtttgcaaa 1620 gcttatagtc aatattatca gtataaatac cttgattatt gcatttactg taatctcttc 1680 cgtattgata aactaaaaca caaccttcgt aatgtggttg aactataggc tgttgggata 1740 cagtaatttt atattatgaa taattataaa agtcaaaaaa ttaatttaat attaaacaag 1800 aaaaaaatca aaattttgat taaatattga gaaaaattta cccattgcag tataaaaaat 1860 ctatttaaaa cactatttta tggatattta atgcgaaagg taactaaagt ttaagaattt 1920 taatctgtga cattaaaaaa gttaccttta ggtatgtttt tcgcattaaa aaagttacct 1980 ttcgcattaa aaaagttacc tttagcaatt tcaagcccca tttttccata gctaaaatgc 2040 ccgtaaacaa gtataaacaa gagtaatatt aaacaaggga aaaaatcaaa aaatcttaaa 2100 cttttcttaa gtagcaaaaa atagactaaa aatatatagt ttttcttgaa aatttaagct 2160 aaaaatacta tcattttaat attagggcga ggttactcta cgtagctaca aatgctaaac 2220 acatttttgc tactccgaga actcgttagg gagaccctaa aaccccttga cactcttaaa 2280 aactttttaa gttgttttta agagttaagc ttatcttccc ttttaggttt agataagcat 2340 tagggcggtg ggctttgtcc gtcttccgtg ctacgcactc agacagcccc cgcaccccct 2400 tttcgcaaat catagcacct taccaggtgc gatttgcttt agctaataga aaggagtaaa 2460 gcattaaaac tttaactaaa agattaagac tttcacaaga tgagtgggag caaatacaaa 2520 tcaaactaaa agaaagtgag cttaattttt ctagctttgc tttaaaatct atgctaaaac 2580 aaaagtccct taaaagaaaa caaactccaa ttaatagaga ttttatagcc gagctttcta 2640 agtggggtaa taatttaaat caagttgcaa agcatttaaa cacatcaaaa ggcggacttg 2700 atcgtgtagg attagaaatg ttaagtcgca ttgaaaatca tctaaaagaa cttagaaaag 2760 ccattgaatg atttgtaagt tctttaaaac tcaaaaaggc gggggtgtat catcggttga 2820 ttatatgcta aatgagagag ttaatcaagg cacagcaaga atattaaaag gggacgagtt 2880 tttaacaaga gagtttatta aatcaatgag ccaaaagcat aaaacttgcg taggtgtttt 2940 atcttttgaa gaaaaaaaca tcgatgagaa caccaaaaaa gaaataatgc aaagctttga 3000 aaacgccctt ttaacccctg caatgcaagg acgttataat attttgtgga tagaacatac 3060 agacaagggc agattagaat taaactttat aattccaaaa atggacctag aaagcaaaaa 3120 gtcatttaac ccttactacc accccattga taataaaaga attgattttt ggcgtgattt 3180 tgttaattta tgctatggtt ttacaaatcc aaaagatccg agtaaagaac aaaccctaca 3240 aggaagcaaa aaagaaaagg agctttttaa ggactatgaa gccctagata agatacttca 3300 taagcaagta gctaataaaa ttatcaattc aagagacgaa ctcatttatt ttttagagca 3360 aaacaatatc gaagtaacaa gaaaaggaag tgattattta agcattaaac taccagaaag 3420 caaaaaagct aaaaggttta aaggaggcat ttacaatgaa caatttagaa gctttgaaaa 3480 gcttagagac ttacgcacag aaaaagaaag cagagcaaga gagtatcaac aaagagatat 3540 taaatcagag cttgaacgaa ctaaacgaga acttgataaa ttcattcaat caaaagatga 3600 gtattacaga gaaacaatta gaaaatttaa cgagcgatta cagggaaaaa ctagaaaatt 3660 caatcgaaaa aatggagaaa tacaattaca agatacagct aatgaaattc aaaatatcca 3720 gcctagcaat gagtttttta gtgggaatgc ttacgatgat gattttaagc gtagttgtat 3780 ggtatctgtg gataagacct tatcagatca gcaaggagct aacaacaaaa tcgaacagcg 3840 ggaaaattta tatacaaatg ccgaaagaga gtgtgatagt gcaagacaat tattattacc 3900 taccactaga ttagaaaagg cagaaaatga cgactttaga attagaatta atagcagaaa 3960 tagagagatt acaggacaag ataacagaat atcaacaagc agagatgaaa ttacacgaga 4020 taatcaagag cgaacgaata gcatacgaga acgctttgga agctatgaga aacaaactca 4080 acagcttaga gcaggatttc aaggatttga aacagaaaac acaagaaacg gagcaattaa 4140 acgagcaaga attgaaacaa ttagagacat tatacaagca aaatatacag aacttagaga 4200 acgaattaga aacagcttta aaaagacaat aaataaagca agacagatta aaagagattt 4260 tggatatagt agataa 4276 //