ID DQ497626; SV 1; circular; genomic DNA; STD; PRO; 5206 BP. XX AC DQ497626; XX DT 16-MAY-2006 (Rel. 87, Created) DT 05-OCT-2008 (Rel. 97, Last updated, Version 3) XX DE Bifidobacterium breve plasmid pB21a, complete sequence. XX KW . XX OS Bifidobacterium breve OC Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; OC Bifidobacteriaceae; Bifidobacterium. OG Plasmid pB21a XX RN [1] RP 1-5206 RX DOI; 10.1016/j.plasmid.2008.06.005. RX PUBMED; 18652842. RA Shkoporov A.N., Efimov B.A., Khokhlova E.V., Steele J.L., Kafarskaia L.I., RA Smeianov V.V.; RT "Characterization of plasmids from human infant Bifidobacterium strains: RT sequence analysis and construction of E. coli-Bifidobacterium shuttle RT vectors"; RL Plasmid 60(2):136-148(2008). XX RN [2] RP 1-5206 RA Shkoporov A.N., Efimov B.A., Khokhlova E.V., Postnikova E.A., RA Smeianov V.V., Kafarskaia L.I.; RT "Molecular characterization of 84 Bifidobacterium spp. isolates cultured RT from human infant feces"; RL Unpublished. XX RN [3] RP 1-5206 RA Shkoporov A.N., Efimov B.A., Khokhlova E.V., Kafarskaia L.I.; RT ; RL Submitted (18-APR-2006) to the INSDC. RL Dept. of Microbiology, Russian State Medical University, Ostrovityanova RL str. 1, Moscow 117997, Russian Federation XX FH Key Location/Qualifiers FH FT source 1..5206 FT /organism="Bifidobacterium breve" FT /plasmid="pB21a" FT /host="Homo sapiens" FT /strain="B21a" FT /mol_type="genomic DNA" FT /db_xref="taxon:1685" FT CDS complement(join(5100..5206,1..268)) FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="ORF5; similar to pCIBb1 ORF131 in NC_002133" FT /db_xref="UniProtKB/TrEMBL:A9CCY0" FT /protein_id="ABX10957.1" FT /translation="MFTVPPVAADRFAGILQVTQKIDPATMHPKQGYTADGKPSGEAKL FT VEGHQVYRVPVQYIDDSGVDSSVSLQVFTLPTKVIPALAQLVPTGTVRMVPWVRNGRIA FT WSLTADGIEVLDSITGVLDD" FT CDS 435..896 FT /codon_start=1 FT /transl_table=11 FT /product="putative transcriptional regulator" FT /note="ORF3; similar to pCIBb1 ORF120 product in NC_002133" FT /db_xref="UniProtKB/TrEMBL:A9CCY1" FT /protein_id="ABX10955.1" FT /translation="MSTDRKKNIRDKQLLDSVTEEQINEEMTEIKKALFHQIHRHGNKL FT ASETDLDTSLSKLLLLRKLSNELNDLAEIVAASAVSRHVSLSNIGRAYGLDPANVKRKF FT KDLDAINAAKMKYYETKEPVPVTINGRTIMFDRTFISGEYKEKSLWPRE" FT misc_feature 684..749 FT /note="Region: potential HTH-motif" FT gene complement(1608..3305) FT /gene="rep" FT CDS complement(1608..3305) FT /codon_start=1 FT /transl_table=11 FT /gene="rep" FT /product="Rep" FT /note="putative rolling circle replication protein; similar FT to Bifidobacterium breve plasmid pCIBb1 Rep protein FT presented in accession number NC_002133" FT /db_xref="GOA:Q1HDV9" FT /db_xref="InterPro:IPR000989" FT /db_xref="UniProtKB/TrEMBL:Q1HDV9" FT /protein_id="ABF54922.1" FT /translation="MSIATQRTTPKERVTSSHKPDAPDSGADVAEAQAGAQSEAAKPRS FT GSRDNTKFVTPPAKNGEKYDRNAEISRYIRRWKSKNLLWSQAFIDSGQSGKKKPNMRRV FT YDEVRRPAYCGQRANGYAKGVKVKVAAEHRRYRHGGHAELRLNESGRGSYAGVVKCSSI FT WSCPTCSATIRQRRSVEIQTAVNKHLENGGSILFMTLTLRHDGTMPLAFTLDALLSGFR FT KVIRGKPWDKWRNRLGLIGNIKSVEITLGDEDGWHPHLHVLLFAETKVDDDMLERFRAW FT LFPRWAENLNKVADEWNESRTANGQRKWVITPSEAHGVDLQRVDDHGKVIALYISKFQD FT DKAEDSHTWEVSGEMARGDVKDGHEGDGDTHINPFQLLDDECPLKMSAGERRRKWIEYV FT SFTSGRQCIRWSPGLKEHFGIDDLNDNEIIEQQTQRAVMAWRIESAPYDEALKHNPKIL FT AQAKHAIEDHDWDKLRELLPGHKAQVLDDNGLWNISFDRTKAGKAKRQKTEIQGIRYQW FT EDLRQDMKVVARTAKPVPFDDKWNAEQPEKATPPVSPPLALLDLTESA" FT gene complement(3428..4309) FT /gene="ftsK" FT CDS complement(3428..4309) FT /codon_start=1 FT /transl_table=11 FT /gene="ftsK" FT /product="FtsK" FT /note="putative transfer protein; similar to FT Bifidobacterium breve plasmid pCIBb1 hypothetical transfer FT protein presented in accession number NC_002133" FT /db_xref="GOA:Q1HDV8" FT /db_xref="InterPro:IPR002543" FT /db_xref="UniProtKB/TrEMBL:Q1HDV8" FT /protein_id="ABF54923.1" FT /translation="MRFPWKHQQKPEPSKFRLLPFDPVAGRITFGLLEDGSPASIIIRN FT QSGVVVGGRPGSGKTAGMMIIVLALYLSGQVNLHIIDGKGGDDWTWAENAATTFIRDDI FT DLVHEAILNLNRDMKSRTASMRANYGESNFWNLPPDKRPPLEVIIVDECQTYFDPKGVT FT SDDGRPVKELRDLAQDITGAATNIVRKGRSAGYLLFAITQKPTTDCLPSQLRDNCGARI FT CFQISTPEAARAVLGNLPDGSPSPLDIPTSRPGGAVIGLDNGQAAMCRFAYISENDAMT FT AIDAIANNKPVV" FT gene complement(4306..4899) FT /gene="mem" FT CDS complement(4306..4899) FT /codon_start=1 FT /transl_table=11 FT /gene="mem" FT /product="putative membrane protein" FT /note="contains at least two predicted transmembrane FT helices; similar to pCIBb1 ORF190 product in NC_002133" FT /db_xref="UniProtKB/TrEMBL:A9CCY2" FT /protein_id="ABX10956.1" FT /translation="MSELKKIGQETAKAQAKQEAKKNQPDVSGTVGLTLVWLAVIVLPF FT MLHADIIGWLALAVAVILLVAGIFWKPLRSGMSNALVGLVPLWGIVARFDRVNTCSKLR FT KAEIYTDEDKTKTIPATTYKRDGDTFVRFDGGGESGMNPDHLKELLTQNARVWRCRSFA FT ISEDTANPGLFTVQLSTSPTVKTALDNAVIGVLA" XX SQ Sequence 5206 BP; 1114 A; 1416 C; 1513 G; 1163 T; 0 other; cggtgggaac gagttgagca agtgccggaa tcaccttggt gggcagggtg aacacctgaa 60 gagaaacgga agagtctacg ccagaatcat cgatgtactg cacgggaacg cggtagacct 120 gatgaccctc gacgagcttg gcctcgccgc tgggcttgcc atcggcggtg tacccctgct 180 tggggtgcat ggttgccggg tcaattttct gagtcacttg caggataccg gcaaaacggt 240 ctgcggcgac agggggaaca gtaaacattt ttttcctttc cagttacgct ctctaccaaa 300 cagatagagg aatccccgct gacgcggggt aaatggccgg ggcgcgggat tgcaccccca 360 gcaagcttca tatgtaatat tacatcagta atggtacata ggtaaaatca cggcgtgttg 420 tgtaagataa agtcatgtcc acagatagaa aaaagaacat cagagataag caacttctcg 480 attccgtcac cgaagaacaa atcaatgaag aaatgacaga aatcaaaaaa gcacttttcc 540 accaaataca tcgtcacggc aacaagttgg cctcagaaac agacctcgat acgtcacttt 600 ccaaacttct actgctacga aaactcagca atgaactaaa cgatctagct gagattgtcg 660 cagctagtgc cgtcagcaga catgtatcgc taagcaatat cggaagagcc tacggacttg 720 accccgccaa tgtgaaaaga aaattcaaag accttgacgc catcaacgcc gccaagatga 780 aatactacga gaccaaagag ccagtaccag taacaatcaa cggcagaaca atcatgttcg 840 atagaacatt cattagtgga gaatacaaag aaaaatccct ctggccacgc gaataaatgt 900 gcctgtgggc gcatcgagcg cccacaacca ctgtgctggg gtccccctgc ccccatcact 960 cgaaagcttc gaggacgcag gggaagtcac ggccaagaat gccgtcaatg gtgacgcatg 1020 cactggccgg tgcccgtagg tcttcccgac gcgttgtcgg gaagacggga gggtggcgct 1080 accgttatcg ccaccagtgg cgtgatactt gtagcgctac cggtgacgct actattgagc 1140 tatggcagct aagacataca gcgttgatga acttgcacat ctgaccggcc tatcggtgtc 1200 gggtatcaaa aaagcgattg cggagaaacg tatcaaggct cgcaagatcg ggcgtagctg 1260 ggcgattgac ccgagcgacc cgaccgtgca gggctggttg accaaggccg atgtggtaaa 1320 gtcccccgat gttcaggcct tgaccgagga aatcagcaag cttcgccgtg agaacgcgaa 1380 tcttgccaag cgcgtccgtc aggccgaagc cggacaacgc agggctgaga gggaaacccg 1440 ccagttggag gcggagcttg cggaggccta caagtccagt acggagcagg cgcatgagaa 1500 cgcccggaaa atctatgagc tgtctcatga agtcatcgaa caggcggcgc aggagaacac 1560 aaggacattg ctcaaggtcg tgggcttgct tgccaatacc gagaagccta tgcagattct 1620 gtcaggtcaa gtagcgccag aggaggcgac accggaggcg tagccttttc cggttgttca 1680 gcattccatt tgtcatcgaa cggaaccggc ttggcagtac gcgcgacgac cttcatatcc 1740 tggcgtaggt cttcccattg gtagcggata ccctgtatct cggttttctg acgtttggcc 1800 ttgcctgcct ttgttcggtc gaagctgatg ttccagagtc cgttatcgtc aagaacctgt 1860 gctttgtggc cgggcaggag ttcgcggagc ttgtcccagt cgtggtcttc gatggcgtgt 1920 ttggcctgtg cgagaatctt cgggttgtgt ttcaacgcct cgtcgtatgg tgctgattcg 1980 attcgccatg ccatgacggc gcgttgcgtc tgttgctcga tgatttcatt atcgttgagg 2040 tcatcgatac cgaagtgttc cttaagtccg ggcgaccagc gtatgcattg gcgacctgag 2100 gtgaaggaga cgtattcaat ccacttccga cgtcgttcgc cagccgacat cttcaacggg 2160 cattcatcgt ccaacagctg gaacgggttg atatgggtat ctccgtcacc ctcgtgaccg 2220 tctttcacat caccgcgcgc catctcgccg gacacctccc atgtgtgaga gtcttccgcc 2280 ttgtcgtcct gaaacttgct gatgtagagc gcgatgacct tgccgtggtc atctacccgt 2340 tgcagatcca ctccgtgggc ttcgctgggt gtgatgaccc atttgcgttg cccgttggcg 2400 gtcctgcttt cgttccactc gtcggccacc ttattcaggt tctccgccca acgggggaac 2460 agccatgcgc ggaaccgttc tagcatgtca tcgtccacct tggtttcagc gaacagaagc 2520 acgtgcaggt gagggtgcca gccgtcctcg tcgcccaagg tgatttcgac gctcttgata 2580 ttgccgataa gtccgagccg gtttcgccat ttgtcccaag gtttgccgcg aatgaccttg 2640 cggaagccgg agagcagggc gtcaagggtg aacgccaatg gcatggtgcc atcgtgcctc 2700 agcgtgaggg tcatgaagag tatgcttccg ccgttttcca agtgcttgtt gaccgccgtc 2760 tgaatctcga ccgagcggcg ttggcgaatg gtggccgagc aggtcgggca tgaccatatc 2820 gaggagcatt tgaccacacc ggcgtaggag ccacggcctg attcgttcag cctgagttcg 2880 gcgtgcccgc catgacgata ccggcggtgt tccgcagcga ccttgacttt cacgcctttc 2940 gcgtatccgt tggcgcgttg gccgcagtat gcaggtcgtc gtacctcgtc gtacacccgt 3000 cgcatgttcg gcttcttctt gcctgattgt ccggagtcga tgaacgcttg cgaccacagc 3060 agattcttac ttttccaacg tcggatataa cggctgattt cagcgttacg gtcgtacttt 3120 tcaccgttct tagcaggggg ggttacgaat ttagtattat ccctagagcc gcttcgcggc 3180 ttcgcggctt cggactgcgc gccggcttgc gcctctgcta cgtccgcgcc gctatccggt 3240 gcgtccggtt tatgtgaaga cgttacccgc tctttgggtg tcgtcctctg agttgctata 3300 ctcatggttg taacgacttt caagttatgg ccgatagcgc gaagtttggc gacagggcgc 3360 tatcagcgag cttcagattc cccggggttc cagccccggg gtttcttctt tctactaaac 3420 caacagccta aactacaggc ttattatttg caatcgcgtc aatggcagtc atcgcgtcgt 3480 tctcgctgat gtaggcaaac cgacacatgg cggcctgacc attatcaagg ccgatgaccg 3540 cgccaccggg tcgtgacgtt gggatatcca acggggaggg cgagccatca ggcagattgc 3600 ccagcacggc gcgtgcggcc tcgggggtcg atatctggaa gcagatacgt gcgccgcagt 3660 tgtcacggag ctggcttggc aggcagtcgg tcgtgggttt ctgggtgatg gcgaagagca 3720 ggtatccggc agaccgtccc tttctcacga tgttggtggc ggcaccggtg atgtcctgag 3780 ccaaatccct gagttccttg acggggcgac catcatcgct ggtcactccc ttggggtcga 3840 agtaggtctg gcattcgtca acgatgatga cttcaagcgg tggcctctta tccggtggaa 3900 gattccagaa gttactttcg ccgtaattgg ctcgcataga ggcggttcga gatttcatat 3960 cacgattgag attaaggatt gcttcatgta caaggtcgat gtcatcacga atgaacgtcg 4020 tggcggcgtt ttccgcccaa gtccagtcat cgccgccctt gccatcgatg atgtgcaggt 4080 tgacctgacc ggacaagtag agcgccagca cgataatcat catgccagcg gtcttgccgc 4140 ttccgggtct tccacccacc acaacgccac tctggttcct gatgatgatg gacgcggggg 4200 agccgtcctc aagcaagcca aacgtaatgc gtccggccac tgggtcaaac ggcagaagcc 4260 ggaactttga tggctccggc ttctgttggt gtttccatgg gaatctcatg cgaggactcc 4320 gatgacagcg ttgtcgagtg cggtcttgac cgtgggactg gtggagagct gaacggtgaa 4380 cagtccgggg ttggccgtgt cctcgctgat ggcgaatgac cggcaccgcc aaaccctcgc 4440 gttctgggtc agcagttcct tgaggtggtc ggggttcatg cccgattcac cgccaccgtc 4500 gaacctaacg aacgtgtcgc cgtcccgctt ataggtggtg gccggaatgg tcttggtctt 4560 atcctcgtcc gtgtagattt cggccttgcg gagcttcgag caagtgttga cgcgatcgaa 4620 gcgtgcgact atcccccaga ggggaacaag gccgaccaag gcgttggaca tgccggagcg 4680 caggggcttc cagaagattc cggcaacaag caggattacg gcgacggcga gggcgagcca 4740 gccgatgatg tcggcgtgga gcatgaacgg caggacgatg acggccagcc agacaagggt 4800 aagccccacg gtgccggaaa cgtccggctg gtttttcttg gcttcctgct tggcctgagc 4860 cttggcagtt tcctgaccaa ttttcttaag ttcactcatg ccaatcgacc tcctcaatca 4920 ggttggactc gataaggtgc tggatagcgg tggagcgagt ttccgcatag ccagccgcgc 4980 aacgcttctg cacataggca tcgagggtat cgacactaat ggtgggaagc gtgatggaga 5040 gcctacgacg gcgaggcggg agaagcttcc gcaactccct tggtgaaacc tcctgaaact 5100 cagtcatcga gcacccccgt gatggagtcc agaacctcga tgccatcggc ggtgaggctc 5160 caagcgatgc gcccgttgcg cacccatggc accatgcgga cggtac 5206 //