ID DQ458910; SV 1; circular; genomic DNA; STD; PRO; 4896 BP. XX AC DQ458910; XX DT 01-NOV-2006 (Rel. 89, Created) DT 01-NOV-2006 (Rel. 89, Last updated, Version 1) XX DE Bifidobacterium longum plasmid p6043A, complete sequence. XX KW . XX OS Bifidobacterium longum OC Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; OC Bifidobacteriaceae; Bifidobacterium. OG Plasmid p6043A XX RN [1] RP 1-4896 RA Sangrador-Vegas A., Stanton C., Ross R.P.; RT "Relatedness among Bifidobacterium longum plasmids"; RL Unpublished. XX RN [2] RP 1-4896 RA Sangrador-Vegas A., Stanton C., Ross R.P.; RT ; RL Submitted (23-MAR-2006) to the INSDC. RL Moorepark Food Research Centre, Teagasc, Moorepark, Fermoy, Co. Cork, RL Ireland XX FH Key Location/Qualifiers FH FT source 1..4896 FT /organism="Bifidobacterium longum" FT /plasmid="p6043A" FT /strain="DPC6043" FT /mol_type="genomic DNA" FT /db_xref="taxon:216816" FT CDS complement(join(4674..4896,1..689)) FT /codon_start=1 FT /transl_table=11 FT /product="RepA" FT /note="replication protein" FT /db_xref="GOA:A0ES89" FT /db_xref="InterPro:IPR000525" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:A0ES89" FT /protein_id="ABE99605.1" FT /translation="MSDEIVKYSNQFNNQALRKFTALDLDLLMAIASRVRDKGTDEVAF FT TFEELKRLAGLQRNMTNDEFAKQIANVNRRLLALNFEFQNEEHDIIQFALFAGFVTSPT FT KRTLTVSVNSRFSFLLNDLTSQFTRFELAEFTALRSSYAKECYRRLKQYRQTGVWKVSL FT EDFRRLLDVPKSYRPSEINKYVLKPIEEELGPLLNLKVHRKYLKKKPGRGRASLVGFEF FT EFDPEKVPGGAPAPRVELSGSVVTDEARKSLRDVSKTPVPDLSVPGEGPALDPDTQAFL FT DAHGGHGFAGAEGYVSDWPSAA" FT CDS 2083..3195 FT /codon_start=1 FT /transl_table=11 FT /product="MobA" FT /note="mobilization protein" FT /db_xref="GOA:A0ES90" FT /db_xref="InterPro:IPR005053" FT /db_xref="UniProtKB/TrEMBL:A0ES90" FT /protein_id="ABE99603.1" FT /translation="MRDERTGEAFNGFGRRERVEHVCTMLPEGAPGEYLDPERLFNAVE FT MAEKRSDARPAKKIMVALPREFDARERFRALEDFISWNITANGYACTYAIHTDKDGRNP FT HAHILVANRRIDPKTGRWAAKSRSEFALDANGRRIPVIDPDTGRQKIGARNRKVWKRVN FT VSNNPLDSKEFLERLRREWADSCNALLPGYAVIDHRSFKARGIERIPTIHEGYASREME FT KRGGRGDLCEENRRIQALNRLLDALRAMIGRLSDQAQGILTAVKRRQRPSGAPQAPSSP FT EPAERPQERPQARETPPQAPQEPPKPIRTKKALTDRFKTRLDERLAENERKQAEKQAEP FT DMEETWDLSDPADPLNIGMGWGTGGHGLGL" FT CDS complement(3259..3762) FT /codon_start=1 FT /transl_table=11 FT /product="MembA" FT /note="membrane protein; unknown function" FT /db_xref="UniProtKB/TrEMBL:A0ES91" FT /protein_id="ABE99604.1" FT /translation="MLRTKHLKMAVVPMTLLALLSTAVPVASAQETTDESFYELTTTPS FT GGDMIVGEPGTTILFDSSNGELVDVLPPSEAEDYSVTVSRGCADSNAGCWAGGNALGDM FT QFAGTGTATGSWPYRNSYTTGNKSGQITFAINGVTYTPVAAGPWMRIATADGSGVDGVS FT VTRW" XX SQ Sequence 4896 BP; 1000 A; 1608 C; 1420 G; 868 T; 0 other; ggtaccttct ccgggtcaaa ttcaaattcg aacccgacaa gggaagcgcg gccacgtccc 60 ggcttcttct tcaggtactt gcgatgcacc ttcagattca gcagaggtcc caactcctcc 120 tcaatcggct taagaacata cttgttgatt tcgctcggcc gatacgattt gggtacatcg 180 agcagtcggc ggaagtcctc aaggctgacc ttccacacac cggtttgtcg gtactgcttg 240 agcctcctgt agcactcctt ggcgtagctg gagcgcaggg ccgtgaactc ggccagctcg 300 aagcgggtga actgcgaggt gaggtcgtta agcaggaacg agaagcgcga gttcaccgat 360 acggtgagtg tgcgtttggt cgggctggtg acgaagcctg cgaacagggc gaactggatg 420 atgtcgtgct cttcgttctg gaactcgaag ttgagcgcga gcaggcgacg gttcacattg 480 gcaatctgct tggcgaactc atcgttggtc atgttcctct gaagtccggc cagccgcttc 540 aattcttcga acgtgaacgc cacctcgtcc gtgcccttgt cccgcacgcg agacgcgatg 600 gccatcagca aatcaagatc gagcgcggtg aacttgcgca gcgcctgatt gttgaactgg 660 ttcgagtact tcacgatctc atcggacatg actgcattct accataaaaa cgagattttt 720 atattttcta ccctttattc tcccaaaacc tcgtttttat tcctcaaaag cgtcctttat 780 tctcccaaaa cctcccctaa ataattccca aaatctcccc tttaatctcc cattttctcc 840 cctttaatag tgcgtttccc ctactgccgt aaggcctgcg gggagtctaa aagagtacaa 900 aagattctat aaaaaggggc tccgccccga tgaagagaag aaaccgactc agttccaagg 960 ctgctgctgc cattgctgtg gctgttggaa tccgggctgg tagccatagc ccggctgctc 1020 ctgtatctga ggctcttggg gcaggtcacg aacctgttcc cgcagctcac ccgctgactc 1080 agcgctgggg agcctcacgc ccgcgtcaga ggcccatgcg cgcagttcgg cggcatgggc 1140 cttgagcatg tccagcagcc tttgccggtt gccctcgtcg ttccagacgc cctcgtcgta 1200 gccaagcacg ccctcgttgg agaggatgcc gcccagccgg atgatcagat gggtgcgccg 1260 cttgcgcgcc ttggcgttct ccctagccac gatgcgctgt ttgcgcgccc tgagctgctt 1320 catccggcgc tcgatgtcgg ccatctgctc ctcgacgctc ctggtcatcg gttcctccct 1380 gcgttccgtc ggttatcaat caggacgcta gaccccacgg cagcacggca cggggcacgg 1440 cgtctacaca ccaaacctaa acccggaaga acggagccgg tttggacatc caagccgcga 1500 gggcgaagcg ttcatcaatg ccgaacgtgc cgcccccgcc gatttccgcg cgcatgacgg 1560 ccacgggagg gaaacaccga ccggaaaagc ctcttcgcaa gctgcggcag cttgcgaaga 1620 gcagccgaga ggatcagcct tgccgcagtc tcaggaaact ccccgtaaat caatcccatg 1680 aatcgccaag cccattgcat aagagcatca gaaaattcgt ccatgcaccg ctctatgcgt 1740 cgaccgacac gccggtaacg gaaccatccc cgcaaggtca ggtggaagtc cctcaatttc 1800 attgagggcg cacttacatg ttaccggtgg taacattcag cgtaagtgcg ccctcccgag 1860 gggccactcc gtgggggcca agcgtgcgcc gcttggatcc gcgccccgtc ccggcggggt 1920 gccggccacc tccccggtgg agggccaacg ggcctcccgg ccctttggat tcccggaaag 1980 gagtacagtc ccgtggcgat ctactcgttg cacgtgtcga acgtgagccg tgccgccggc 2040 tccagcgccg tcgcctcctg ctcgtacatc acctcgcgtc ggatgcgcga cgagcgcacc 2100 ggcgaggcgt tcaacgggtt cggccgcagg gagcgcgtcg agcatgtatg cacgatgctg 2160 cccgagggcg cgcccggcga gtacctcgac ccggagcgtt tgttcaacgc cgtcgagatg 2220 gccgagaaac gttccgacgc gaggcccgcg aagaagatca tggtcgccct gccccgcgag 2280 ttcgacgccc gcgaacgctt ccgcgcactg gaggacttca tctcatggaa catcacggcc 2340 aacggctacg cctgcacgta cgccatccac accgacaagg acggacgtaa cccccacgcg 2400 cacatcctcg tcgccaaccg gcgcatcgac ccgaagaccg gcagatgggc ggcgaagagc 2460 cgcagcgagt tcgcgttgga cgccaacggc cggcgcatcc ccgtcatcga ccccgacacc 2520 ggacggcaga agatcggcgc cagaaaccgc aaggtctgga agcgcgtcaa cgtgagcaac 2580 aaccccttgg actccaagga gttcctcgaa aggctcaggc gcgagtgggc cgactcctgc 2640 aacgccctgc tccccggata cgccgtcatc gaccatcgga gcttcaaggc gcggggcatc 2700 gaacgcatcc ccaccatcca cgagggatac gccagccgcg agatggagaa acgcggcggc 2760 aggggcgacc tgtgcgagga gaaccggcgc atccaggccc tgaaccggct cctcgacgcg 2820 cttagggcca tgatcgggcg gctctccgac caagcgcaag gcatcctgac ggccgtcaaa 2880 cgccgccaac ggccctcagg cgcgccacag gccccttcaa gccctgaacc ggccgaaagg 2940 ccacaggaac gcccgcaggc tcgtgaaacg ccgccacagg ccccgcagga acccccgaag 3000 cccatcagga cgaaaaaggc gctcaccgac aggttcaaga cacggcttga cgagcggctg 3060 gccgaaaacg aacgcaaaca ggccgaaaaa caggccgaac ccgacatgga ggagacatgg 3120 gacctctccg accccgccga cccgctcaac atcggcatgg gctggggcac gggaggccac 3180 ggactcggcc tgtgagaacg ccgggaacgc aaagggccgg catccgaaga caccggcccg 3240 aaatttagaa agacatcctt accagcgggt aacggatacg ccgtcgacgc cagagccgtc 3300 tgccgtggcg atgcgcatcc acggaccagc tgcgacaggg gtgtatgtaa ctccattgat 3360 tgcgaaggtg atctgtcccg acttattgcc ggtcgtatag ctgttgcgat acggccagga 3420 ccccgttgcc gttccggtgc ctgcaaactg catgtcaccc aaagcgttcc cgccagccca 3480 gcatccagca ttggaatcag cgcatccacg cgagacagtt accgaataat cttcagcctc 3540 gctcggcggc agcacgtcca ccaattcgcc gttgctggaa tcaaagagaa tcgttgtgcc 3600 aggttcgccg acaatcatgt ccccgcccga cggagtggtg gtaagttcat agaacgattc 3660 gtcagtggtt tcttgagcag atgccaccgg gactgccgtc gacaggagcg ccagcagagt 3720 cattggaacc actgccatct tcaaatgctt ggtacgtaac atttttgccc cccttgatta 3780 ggtatgccag acgtgcgtct gacaaggaaa ttatagctct tggaccttgg attgaacaga 3840 ccagtaatgc aaagggttgg tgtttgaaga cgccggcccc gcatccgaag acgcggggcc 3900 acggcccaat caaaggggat ggcgggtaac ccatcccgcc ggcatcggcc atccccgaaa 3960 agtcatgcat gcccgcctga tcgtaagggg gaagttagca gcgcctccgc cggcgtttcc 4020 atcttagccg atacgattgg cgtcgtcgat ggacgtcttg tagcagggac gaaaaccgac 4080 cgcccggcat ccgccgggcg acgctgccgc gccagtcgcg gcgcggcccg aacgaaaggc 4140 gcagcacatg cgcatgggta acaaggggcc gcacggccgg ccctggatat ggctgatggc 4200 ggtcatcgtc atctgcctcg ctcccgtgat ggatcccatc gcggccgaca tcaccgtgac 4260 ggccctggcc gtctgggcga tggcatccag ccgccgttga cggcgcaacc tgccgcgggt 4320 cggagcccgc ggcaggcccc ttgttcagaa aagagtcggc tcgataccag gctccatccg 4380 atcatcgggc atggcctgtg aatcatggct gcgtctggcc acctcgaatg gtgtcagacc 4440 atcgtgggcc gccttatacg catccagttc agccctggct cgttccgccg caagttcacc 4500 gcgctcgatc ttgatttgct gatggcggtc atcgccgtct gtctcgcacc ggcggtgcat 4560 cccatcgccg cggacatcat cctcacggcc ctggccgtct gggcgatgag aaacagccgc 4620 taaacggcac ccggcccgtc cgagcgcaag cccggacggg ctttcacata ccatcacgca 4680 gcactcggcc agtcggagac atacccctcg gcaccggcga atccatgacc gccgtgcgcg 4740 tcgaggaacg cctgagtatc agggtcgagc gccggtccct cgcccggcac cgacagatcg 4800 ggcacgggcg tcttcgacac gtccctgagc gacttcctcg cctcatcggt caccacggag 4860 ccggacagct ccacgcgcgg agcgggagcg ccgccg 4896 //