ID   DQ452864; SV 1; circular; genomic DNA; STD; PRO; 2197 BP.
XX
AC   DQ452864;
XX
DT   14-APR-2006 (Rel. 87, Created)
DT   11-NOV-2009 (Rel. 102, Last updated, Version 3)
XX
DE   Bifidobacterium longum strain FI10564 plasmid pFI2576, complete sequence.
XX
KW   .
XX
OS   Bifidobacterium longum
OC   Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales;
OC   Bifidobacteriaceae; Bifidobacterium.
OG   Plasmid pFI2576
XX
RN   [1]
RP   1-2197
RX   PUBMED; 19420998.
RA   Moon G.S., Wegmann U., Gunning A.P., Gasson M.J., Narbad A.;
RT   "Isolation and characterization of a theta-type cryptic plasmid from
RT   Bifidobacterium longum FI10564";
RL   J. Microbiol. Biotechnol. 19(4):403-408(2009).
XX
RN   [2]
RP   1-2197
RA   Moon G.-S., Gasson M.J., Narbad A.;
RT   ;
RL   Submitted (20-MAR-2006) to the INSDC.
RL   Commensals and Microflora (G2), Institute of Food Research, Colney, Norwich
RL   NR4 7UA, United Kingdom
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2197
FT                   /organism="Bifidobacterium longum"
FT                   /plasmid="pFI2576"
FT                   /strain="FI10564"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:216816"
FT   CDS             join(1470..2197,1..193)
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="replicase"
FT                   /note="replication initiation protein; ORF1"
FT                   /db_xref="InterPro:IPR004322"
FT                   /db_xref="InterPro:IPR014820"
FT                   /db_xref="UniProtKB/TrEMBL:Q1PC43"
FT                   /protein_id="ABE28003.1"
FT                   /translation="MYAVAMSEEYSQPTLELSRTFEGWWLPERPLCCDDDYSQLHRRSR
FT                   ADALKCKHVETNPAALVNTIVVDIDDEEARAIALWEHEGMRPNWIAENPDNGHAHAGWV
FT                   LTFPVPRTDLARLKPLKLLHATTEGLRRSCDGDEGYSGLLMKNPEHPAWASDIIEWDTY
FT                   DLEQLVQSLQEHGDMPPVSWKRTKRARTQGLGRNCTLFDEARTLAYRYVRSLPDRSTAS
FT                   NDLLREYVRRTCHELNATLFTDPLPAREVEDIARSIHKWITTRSRMWRDGAVANAATFV
FT                   AMQSARGHKHGENKYQQVMKEALEW"
FT   CDS             187..504
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="hypothetical protein"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q1PC42"
FT                   /db_xref="InterPro:IPR010982"
FT                   /db_xref="InterPro:IPR013196"
FT                   /db_xref="InterPro:IPR013249"
FT                   /db_xref="UniProtKB/TrEMBL:Q1PC42"
FT                   /protein_id="ABE28004.1"
FT                   /translation="MVRTTLRKKRPVSARELAEAYGVSTRTIQSWVAMKREDWIDEQAA
FT                   MREAVRSYHDDEGHTWPQTAEHFNMSQGAVRQRCYRARKEREAEAAEKSKHLPGEMPLF
FT                   D"
FT   CDS             553..876
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="hypothetical protein"
FT                   /note="ORF3"
FT                   /db_xref="UniProtKB/TrEMBL:Q1PC41"
FT                   /protein_id="ABE28005.1"
FT                   /translation="MEIRHADLQIEVEDAEDGGVLLTIIDSARLSLSLPRRTARELLDA
FT                   IDACMKTGERQTTDSVDVWRTADDLPLFGMHVGIDGASWTCGAVRSWDVDGLADELEAL
FT                   LLD"
FT   CDS             complement(873..1238)
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="hypothetical protein"
FT                   /note="ORFX"
FT                   /db_xref="UniProtKB/TrEMBL:Q1PC40"
FT                   /protein_id="ABE28006.1"
FT                   /translation="MYMNRTQHLQRPSVLEQQPECRRPMTGNAPRKSRKAGVASDVIGY
FT                   PITSLATPVPISWFLCGVLHGVISFMPRPFRRCVWRGSRPRPLQSSVDSARAGLDTRGL
FT                   GNEKAPRKNRGACFAAC"
XX
SQ   Sequence 2197 BP; 466 A; 647 C; 713 G; 371 T; 0 other;
     ggatccgctg cccgcacgcg aggtcgagga catcgccagg agcatccaca agtggataac        60
     cacccgctcg cgaatgtgga gggacggcgc ggtggccaac gccgccacat tcgtcgccat       120
     gcaatccgca cgaggacaca aacatggtga gaacaaatat cagcaggtca tgaaggaggc       180
     actggaatgg taaggacgac tttgaggaag aagcgcccgg tgtctgcacg tgaattagct       240
     gaagcatacg gcgtctccac gcgcaccatt cagagctggg tggcaatgaa gcgcgaggat       300
     tggattgatg aacaagccgc tatgcgcgaa gcagtccgct catatcacga tgacgagggc       360
     catacatggc cgcagaccgc cgagcatttc aacatgagcc agggtgccgt gcgtcaacgc       420
     tgctacaggg ctcgcaagga gcgcgaggca gaggcggcgg agaaatcgaa gcatctaccc       480
     ggcgagatgc cactgttcga ctgacgctaa acgttgcccc aaacgcgaac acaacaactt       540
     agggaggcca ccatggaaat ccgtcacgcc gatttgcaga tcgaggtcga ggacgccgag       600
     gacggcggcg tgctgctaac catcatcgat tccgcgcgcc tgtcgctgtc cctgccgcgc       660
     aggacggcca gggagctgct ggacgcgata gacgcgtgca tgaagacggg tgagcgccag       720
     accaccgatt cggtggacgt gtggaggacg gcggacgacc tgccgctgtt cggaatgcac       780
     gtcggaatcg atggggcgtc ctggacgtgc ggcgctgtgc gtagctggga cgtggacggg       840
     ctggccgacg agctggaagc actgctgctg gactagcagg cggcgaagca ggccccgcga       900
     ttctttcgcg gggctttttc gttccccaag ccccgagtgt ccagaccggc gcgcgctgaa       960
     tcgacggacg attggagcgg acggggacgg ctaccccgcc aaacgcatcg acggaaagga      1020
     cggggcatga acgaaatcac gccatgcagg acaccgcaga gaaaccatga aatcggcact      1080
     ggagtagcaa gtgacgtgat tggatatcca atcacgtcac ttgctactcc ggccttgcgg      1140
     cttttgcgcg gagcatttcc ggtcatcggc cttcggcact cgggttgttg ctccagcacc      1200
     gaagggcgct ggaggtgctg cgttcggttc atgtacatga accgtctagc ttgcttacct      1260
     tcgatttgat gggcatctcc atgtggatgt ccatggagat gtccatcgag atatccatag      1320
     ggtgtccatg gagatgtcca tggagatgtt catggagatg tccatctgag cgcacaggaa      1380
     gccggggcgg tgggctgggt tcagccgacg ctttgctggg ctgaactatc tgacttggtt      1440
     cccgcgtatt tgttcactgt acaaatacga tgtatgctgt agctatgtct gaagagtatt      1500
     cgcagccgac gcttgagctg tcgcgcacgt tcgaaggctg gtggctgccc gaacgcccgc      1560
     tgtgctgcga cgacgactac tcccagctgc accgcaggag ccgcgccgac gcgctcaaat      1620
     gcaagcacgt ggagacgaac cccgccgcac tggtgaacac gatcgtggtg gacatcgacg      1680
     acgaggaggc gcgggccatc gccctgtggg agcacgaggg catgcggccg aactggatcg      1740
     cggagaaccc cgacaacggg cacgctcacg cgggctgggt gctcaccttt ccggtgccca      1800
     gaaccgatct ggcgcgtctc aagccgttga agctcctgca cgccaccacg gagggactgc      1860
     gccgctcctg cgacggagac gagggctatt cgggacttct gatgaagaac cccgagcatc      1920
     cggcgtgggc gtcggacatc atcgagtggg acacctacga cctggaacag ctcgtgcagt      1980
     cgctccagga acacggggac atgccgcccg tcagctggaa gcgcaccaag cgcgcccgca      2040
     cgcaggggct gggacgcaac tgcacgctct tcgacgaggc gcgcacgctc gcttaccggt      2100
     acgtacgcag cctgcccgac cgttcgacgg cgagcaacga tctgctgcgc gagtacgtgc      2160
     gccgcacatg ccacgaactc aacgcgacgc tcttcac                               2197
//