ID DQ305402; SV 1; circular; genomic DNA; STD; PRO; 4898 BP. XX AC DQ305402; XX DT 14-DEC-2005 (Rel. 86, Created) DT 05-OCT-2008 (Rel. 97, Last updated, Version 3) XX DE Bifidobacterium bifidum plasmid pB80, complete sequence. XX KW . XX OS Bifidobacterium bifidum OC Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; OC Bifidobacteriaceae; Bifidobacterium. OG Plasmid pB80 XX RN [1] RP 1-4898 RX DOI; 10.1016/j.plasmid.2008.06.005. RX PUBMED; 18652842. RA Shkoporov A.N., Efimov B.A., Khokhlova E.V., Steele J.L., Kafarskaia L.I., RA Smeianov V.V.; RT "Characterization of plasmids from human infant Bifidobacterium strains: RT sequence analysis and construction of E. coli-Bifidobacterium shuttle RT vectors"; RL Plasmid 60(2):136-148(2008). XX RN [2] RP 1-4898 RA Shkoporov A.N., Efimov B.A., Khohklova E.V., Postnikova E.A., RA Smeianov V.V., Kafarskaia L.I.; RT "Molecular characterization of 84 Bifidobacterium spp. isolates cultured RT from human infant feces"; RL Unpublished. XX RN [3] RP 1-4898 RA Shkoporov A.N., Efimov B.A., Khokhlova E.V., Kafarskaia L.I.; RT ; RL Submitted (27-NOV-2005) to the INSDC. RL Dept. of Microbiology, Russian State Medical University, Ostrovityanova RL str., Moscow 117437, Russian Federation XX FH Key Location/Qualifiers FH FT source 1..4898 FT /organism="Bifidobacterium bifidum" FT /plasmid="pB80" FT /strain="B80" FT /mol_type="genomic DNA" FT /db_xref="taxon:1681" FT gene 267..977 FT /gene="membA" FT CDS 267..977 FT /codon_start=1 FT /transl_table=11 FT /gene="membA" FT /product="MembA" FT /note="putative membrane protein; similar to hypothetical FT membrane protein of Bifidobacterium longum plasmid pKJ50 FT encoded by NC_004978" FT /db_xref="UniProtKB/TrEMBL:Q2PRN9" FT /protein_id="ABC18197.1" FT /translation="MHDFSGMADAGGMGYPPSPLIGPWPRVFGCGAGVFKHQPFALLVC FT SIQGPRAIISLSDARLAYLIKGAKMLRTKHLKMAVVPMTLLALLSTAVPVASAQETTDE FT SFYELTTTPSGGDMIVGEPGTTILFDSSNGELVDVLPPSEAEDYSVTVSRGCADSNAGC FT WAGGNALGDMQFAGTGTATGSWPYRNSYTTGNKSGQITFAINGVTYTPVAAGPWMRIAT FT ADGSGVDGVSVTRW" FT gene complement(1041..2153) FT /gene="mobA" FT CDS complement(1041..2153) FT /codon_start=1 FT /transl_table=11 FT /gene="mobA" FT /product="MobA" FT /note="putative mobilization protein; similar to putative FT mobilization protein MobA of Bifidobacterium longum plasmid FT pDOJH10L encoded by GenBank Accession Number AF538868" FT /db_xref="GOA:Q2PRN8" FT /db_xref="InterPro:IPR005053" FT /db_xref="UniProtKB/TrEMBL:Q2PRN8" FT /protein_id="ABC18198.1" FT /translation="MRDERTGEAFNGFGRRERVEHVCTMLPEGAPGEYLDPERLFNAVE FT MAEKRSDARPAKKIMVALPREFDARERFRALEDFISWNITANGYACTYAIHTDKDGRNP FT HAHILVANRRIDPKTGRWAAKSRSEFALDANGRRIPVIDPDTGRQKIGARNRKVWKRVN FT VSNNPLDSKEFLERLRREWADSCNALLPGYAVIDHRSFKARGIERIPTIHEGYASREME FT KRGGRGDLCEENRRIQALNRLLDALRAMIGRLSDQAQGILTAVKRRQRPSGAPQAPSSP FT EPAERPQERPQARETPPQAPQEPPKPIRTKKALTDRFKTRLDERLAENERKQAEKQAEP FT DMEETWDLSDPADPLNIGMGWGTGGHGLGL" FT gene 3550..4461 FT /gene="repA" FT CDS 3550..4461 FT /codon_start=1 FT /transl_table=11 FT /gene="repA" FT /product="RepA" FT /note="replication protein; similar to replication protein FT RepA of Bifidobacterium longum plasmid pDOJH10L encoded by FT GenBank Accession Number AF538868" FT /db_xref="GOA:Q2PRN7" FT /db_xref="InterPro:IPR000525" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q2PRN7" FT /protein_id="ABC18199.1" FT /translation="MSDEIVKYSNQFNNQALRKFTALDLDLLMAIASRVRDKGTDEVAF FT TFEELKRLAGLQRNMTNDEFAKQIANVNRRLLALNFEFQNEEHDIIQFALFAGFVTSPT FT KRTLTVSVNSRFSFLLNDLTSQFTRFELAEFTALRSSYAKECYRRLKQYRQTGVWKVSL FT EDFRRLLDVPKSYRPSEINKYVLKPIEEELGPLLNLKVHRKYLKKKPGRGRASLVGFEF FT EFDPEKVPGGAPAPRVELSGSVVTDEARKSLRDVSKTPVPDLSVPGEGPALDPDTQAFL FT DAHGGHGFAGAEGYVSDWPSAA" XX SQ Sequence 4898 BP; 865 A; 1419 C; 1612 G; 1002 T; 0 other; ggatccatca cgggagcgag gcagatgacg atgaccgcca tcagccatat ccagggccgg 60 ccgtgcggcc ccttgttacc catgcgcatg tgctgcgcct ttcgttcggg ccgcgccgcg 120 actggcgcgg cagcgtcgcc cggcggatgc cgggcggtcg gttttcgtcc ctgctacaag 180 acgtccatcg acgacgccaa tcgtatcggc taagatggaa acgtcggcgg aggcgctgct 240 aacttccccc ttacgatcag gcgggcatgc atgacttttc ggggatggcc gatgccggcg 300 ggatgggtta cccgccatcc cctttgattg ggccgtggcc ccgcgtcttc ggatgcgggg 360 ccggcgtctt caaacaccaa ccctttgcat tactggtctg ttcaatccaa ggtccaagag 420 ctataatttc cttgtcagac gcacgtctgg catacctaat caagggggca aaaatgttac 480 gtaccaagca tttgaagatg gcagtggttc caatgactct gctggcgctc ctgtcgacgg 540 cagtcccggt ggcatctgct caagaaacca ctgacgagtc gttctatgaa cttaccacca 600 ctccgtcggg cggggacatg attgtcggcg aacctggcac aacgattctc tttgattcca 660 gcaacggcga attggtggac gtgctgccgc cgagcgaggc tgaagattat tcggtaactg 720 tctcgcgtgg atgcgctgat tccaatgctg gatgctgggc tggcgggaac gctttgggtg 780 acatgcagtt tgcaggcacc ggaacggcaa cggggtcctg gccgtatcgc aacagctata 840 cgaccggcaa taagtcggga cagatcacct tcgcaatcaa tggagttaca tacacccctg 900 tcgcagctgg tccgtggatg cgcatcgcca cggcagacgg ctctggcgtc gacggcgtat 960 ccgttacccg ctggtaagga tgtctttcta aatttcgggc cggtgtcttc ggatgccggc 1020 cctttgcgtt cccggcgttc tcacaggccg agtccgtggc ctcccgtgcc ccagcccatg 1080 ccgatgttga gcgggtcggc ggggtcggag aggtcccatg tctcctccat gtcgggttcg 1140 gcctgttttt cggcctgttt gcgttcgttt tcggccagcc gctcgtcaag ccgtgtcttg 1200 aacctgtcgg tgagcgcctt tttcgtcctg atgggcttcg ggggttcctg cggggcctgt 1260 ggcggcgttt cacgagcctg cgggcgttcc tgtggccttt cggccggttc agggcttgaa 1320 ggggcctgtg gcgcgcctga gggccgttgg cggcgtttga cggccgtcag gatgccttgc 1380 gcttggtcgg agagccgccc gatcatggcc ctaagcgcgt cgaggagccg gttcagggcc 1440 tggatgcgcc ggttctcctc gcacaggtcg cccctgccgc cgcgtttctc catctcgcgg 1500 ctggcgtatc cctcgtggat ggtggggatg cgttcgatgc cccgcgcctt gaagctccga 1560 tggtcgatga cggcgtatcc ggggagcagg gcgttgcagg agtcggccca ctcgcgcctg 1620 agcctttcga ggaactcctt ggagtccaag gggttgttgc tcacgttgac gcgcttccag 1680 accttgcggt ttctggcgcc gatcttctgc cgtccggtgt cggggtcgat gacggggatg 1740 cgccggccgt tggcgtccaa cgcgaactcg ctgcggctct tcgccgccca tctgccggtc 1800 ttcgggtcga tgcgccggtt ggcgacgagg atgtgcgcgt gggggttacg tccgtccttg 1860 tcggtgtgga tggcgtacgt gcaggcgtag ccgttggccg tgatgttcca tgagatgaag 1920 tcctccagtg cgcggaagcg ttcgcgggcg tcgaactcgc ggggcagggc gaccatgatc 1980 ttcttcgcgg gcctcgcgtc ggaacgtttc tcggccatct cgacggcgtt gaacaaacgc 2040 tccgggtcga ggtactcgcc gggcgcgccc tcgggcagca tcgtgcatac atgctcgacg 2100 cgctccctgc ggccgaaccc gttgaacgcc tcgccggtgc gctcgtcgcg catccgacgc 2160 gaggtgatgt acgagcagga ggcgacggcg ctggagccgg cggcacggct cacgttcgac 2220 acgtgcaacg agtagatcgc cacgggactg tactcctttc cgggaatcca aagggccggg 2280 aggcccgttg gctctccacc ggggaggtgg ccggcacccc gccgggacgg ggcgcggatc 2340 caagcggcgc acgcttggcc cccacggagt ggcccctcgg gagagcgcgc ttacgctgaa 2400 tgttaccacc ggtaacatgt aagtgcgccc tcaatgaaat tgagggactt ccacctgacc 2460 ttgcggggat ggttccgtta ccggcgtgtc ggtcgacgca tagagcggtg catggacgaa 2520 ttttctgatg ctcttatgca atgggcttgg cgattcatgg gattgattta cggggagttt 2580 cctgagactg cggcaaggct gatcctctcg gctgctcttc gcaagctgcc gcagcttgcg 2640 aagaggcttt tccggtcggt gtttccctcc cgtggccgtc atgcgcgcgg aaatcggcgg 2700 gggcggcacg ttcggcattg atgaacgctt cgccctcgcg gcttggatgt ccaaaccggc 2760 tccgttcttc cgggtttagg tttggtgtgt agacgccgtg ccccgtgccg tgctgccgtg 2820 gggtctagcg tcctgattga taaccgacgg aacgcaggga ggaaccgatg accaggagcg 2880 tcgaggagca gatggccgac atcgagcgcc ggatgaagca gctcagggcg cgcaaacagc 2940 gcatcgtggc tagggagaac gccaaggcgc gcaagcggcg cacccatctg atcatccggc 3000 tgggcggcat cctctccaac gagggcgtgc ttggctacga cgagggcgtc tggaacgacg 3060 agggcaaccg gcaaaggctg ctggacatgc tcaaggccca tgccgccgaa ctgcgcgcat 3120 gggcctctga cgcgggcgtg aggctcccca gcgctgagtc ggcgggtgag ctgcgggaac 3180 aggttcgtga cctgccccaa gagcctcaga tacaggagca gccgggctat ggctaccagc 3240 ccggattcca acagccacag caatggcagc agcagccttg gaactgagtc ggtttcttct 3300 cttcatcggg ggcggagccc ctttttatag aatcttttgt actcttttag actccccgca 3360 ggccttacgg cagtagggga aacgcactat taaaggggag aaaatgggag attaaagggg 3420 aggttttggg aattatttta gggggaggtt ttgggagaat aaaggacgct tttgaggaat 3480 aaaaacgagg ttttgggaga ataaagggta gaaaatataa aaatctcgtt tttatggtag 3540 aatgcagtca tgtccgatga gatcgtgaag tactcgaacc agttcaacaa tcaggcgctg 3600 cgcaagttca ccgcgctcga tcttgatttg ctgatggcca tcgcgtctcg cgtgcgggac 3660 aagggcacgg acgaggtggc gttcacgttc gaagaattga agcggctggc cggacttcag 3720 aggaacatga ccaacgatga gttcgccaag cagattgcca atgtgaaccg tcgcctgctc 3780 gcgctcaact tcgagttcca gaacgaagag cacgacatca tccagttcgc cctgttcgca 3840 ggcttcgtca ccagcccgac caaacgcaca ctcaccgtat cggtgaactc gcgcttctcg 3900 ttcctgctta acgacctcac ctcgcagttc acccgcttcg agctggccga gttcacggcc 3960 ctgcgctcca gctacgccaa ggagtgctac aggaggctca agcagtaccg acaaaccggt 4020 gtgtggaagg tcagccttga ggacttccgc cgactgctcg acgtacccaa atcgtatcgg 4080 ccgagcgaaa tcaacaagta tgttcttaag ccgattgagg aggagttggg gcctctgctg 4140 aatctgaagg tgcatcgcaa gtacctgaag aagaagccgg gacgtggccg cgcttccctt 4200 gtcgggttcg aatttgaatt tgacccggag aaggtacccg gcggcgctcc cgctccgcgc 4260 gtggagctgt ccggctccgt ggtgaccgat gaggcgagga agtcgctcag ggacgtgtcg 4320 aagacgcccg tgcccgatct gtcggtgccg ggcgagggac cggcgctcga ccctgatact 4380 caggcgttcc tcgacgcgca cggcggtcat ggattcgccg gtgccgaggg gtatgtctcc 4440 gactggccga gtgctgcgtg atggtatgtg aaagcccgtc cgggcttgcg ctcggacggg 4500 ccgggtgccg tttagcggct gtttctcatc gcccagacgg ccagggccgt gaggatgatg 4560 tccgcggcga tgggatgcac cgccggtgcg agacagacgg cgatgaccgc catcagcaaa 4620 tcaagatcga gcgcggtgaa cttgcggcgg aacgagccag ggctgaactg gatgcgtata 4680 aggcggccca cgatggtctg acaccattcg aggtggccaa acgcagccat gattcacagg 4740 ccatgcccga tgatcggatg gagcctggta tcgagccgac tcttttctga acaaggggcc 4800 tgccgcgggc tccgacccgc ggcaggttgc gccgtcaacg gcggctggat gccatcgccc 4860 agacggccag ggccgtcacg gtgatgtcgg ccgcgatg 4898 //