ID DQ295066; SV 1; circular; genomic DNA; STD; VRL; 7801 BP. XX AC DQ295066; XX DT 01-AUG-2006 (Rel. 88, Created) DT 15-NOV-2006 (Rel. 89, Last updated, Version 2) XX DE Canine papillomavirus type 3, complete genome. XX KW . XX OS Canine papillomavirus 3 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Chipapillomavirus. XX RN [1] RP 1-7801 RX DOI; 10.1099/vir.0.82305-0. RX PUBMED; 17098970. RA Tobler K., Favrot C., Nespeca G., Ackermann M.; RT "Detection of the prototype of a potential novel genus in the family RT Papillomaviridae in association with canine epidermodysplasia RT verruciformis"; RL J. Gen. Virol. 87(Pt 12):3551-3557(2006). XX RN [2] RP 1-7801 RA Tobler K., Favrot C., Nespeca G., Ackermann M.; RT ; RL Submitted (17-NOV-2005) to the INSDC. RL Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 260, Zurich RL 8057, Switzerland XX FH Key Location/Qualifiers FH FT source 1..7801 FT /organism="Canine papillomavirus 3" FT /host="Canis familiaris" FT /mol_type="genomic DNA" FT /country="Switzerland:Zurich" FT /isolation_source="skin lesions from seven-year-old FT Rhodesian ridgeback with canine epidermodysplasia FT verruciformis and in situ squamous cell carcinoma" FT /db_xref="taxon:360397" FT gene 25..480 FT /gene="E6" FT CDS 25..480 FT /codon_start=1 FT /gene="E6" FT /product="putative transforming protein" FT /db_xref="GOA:Q0QLX6" FT /db_xref="InterPro:IPR001334" FT /db_xref="UniProtKB/TrEMBL:Q0QLX6" FT /protein_id="ABC02203.1" FT /translation="MERPWSLASLCVRSGVSLCAISIPCVFCGNLLSFEDRVSFDFKVL FT QVSWKNGLPHACCTSCARSICSREVSQYTSEEISYRQFVQRVGQGFYWIPVRCTCCLGL FT VTTTQKIQALYRRQKFKKVRGRWRTLCTYCAESDNDWERRYFERHRS" FT gene 440..742 FT /gene="E7" FT CDS 440..742 FT /codon_start=1 FT /gene="E7" FT /product="putative transforming protein" FT /db_xref="GOA:Q0QLX5" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:Q0QLX5" FT /protein_id="ABC02204.1" FT /translation="MIGKDATLRDIVLEEQPTPVDNLWCDEELAQSDDDEEEALTNQNL FT RPFRIQTSCGTCERGIKIVVLCTQEGIHCLETLLCRNTSLCCPTCAASYRFDHGG" FT gene 732..2618 FT /gene="E1" FT CDS 732..2618 FT /codon_start=1 FT /gene="E1" FT /product="putative replication protein" FT /db_xref="GOA:Q0QLX4" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:Q0QLX4" FT /protein_id="ABC02205.1" FT /translation="MEGDIDSGTDPDEGTSRGGGFILREAECSDMDTSEDDAEDESSGD FT LINDSLEVQVSQGNSQALLHQQIMREDNRQVQDLKRKYVSPKQKVEAELSPRLRAIKIS FT PPKQSAKRRLFAHSVDSGLESSGQNETSHSTPDSDQVDAVMLVGEEDDRLGRTPTQGLY FT TRGGSQTLITQLMRASNQRATQLALFKKGYGISLTELTRVFKSNKTCNPDWVVVAFGVH FT HNTYSDLVHRLEKHCEYVQCSGNAIATGYIVLMLLRFTAHKNRNTLIKLMKSVLSVSDI FT QILADPPKIRSVPAALYWYRNSMSTAVQSHGPLPDWVARQTLVQHHSGEDNKFVLSTMV FT QWAYDNDHTEESDIAYHYALLADEDTNAAAWLGTNSQAKHVRDCAVMVKHYRRAIMSAM FT SMSEWINRRMGLIEEEGDWKNIGNFLRYQGIEVITFIGALRDMLKGIPKRTCMCIVGPP FT DTGKSAFCLSLLDFFGGRVLSFTNYKSQFWLQPLADTRIALIDDATKSTWDYIDEYMRN FT ALDGNAICVDLKHKNPLQIRCPPLLITSNINIKHNDRWRYLYSRIHIVEFKHAFPFNEE FT GEPVYQLTKGNWKSFFKRLWLRLDLSDQEDEGEDGEPEKTFRCDTRRATDHL" FT gene 2560..4011 FT /gene="E2" FT CDS 2560..4011 FT /codon_start=1 FT /gene="E2" FT /product="putative regulatory protein" FT /db_xref="GOA:Q0QLX3" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:Q0QLX3" FT /protein_id="ABC02206.1" FT /translation="MESLKKRLDAIQDELLTIYEEGSELISVQVQHWNLLRKENVLMHY FT AKKSGVTRLGLQPVPSLRVSAEKAKQAIEMQLTLQTLQDSPYATEQWTLQDTSYERWTT FT EPSHCFKKGPTTVEVYFDGDRANAMHYTMWSKVYYTDVNEKWQKTKSNVDNDGLWFWDN FT CEKRYYVRFSDEAAKYGTGQRWDVVINNEHICPPESVTSTTPTTNACAETEGAAHRKRR FT RVAGGGGTAGPKRQRLQGSTQTTRSETADSTNTSGNTPQLPQEAEEEENAHQEVRRLGR FT PPAARGLLFDTSAGESCANAGRVLVPGAGGHPAPLEPVPRGLASPEPDDPGALQLPVAP FT GQGHTPPEAFPAAPAGHAPDVVRAEAGPGEGPGPGVQGRVSVSSRRRGGPQPFLREAGD FT SSPSVIVLAGPCNTLKCFRYRAKNLHRGLFERISTTWYWAGEGSDRIGSARILLTFSGN FT SQRAEFLNRVRLPPTVTFQSSIFSD" FT gene 4219..5736 FT /gene="L2" FT CDS 4219..5736 FT /codon_start=1 FT /gene="L2" FT /product="putative minor capsid protein" FT /db_xref="GOA:Q0QLX2" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:Q0QLX2" FT /protein_id="ABC02207.1" FT /translation="MVRARRTKRASAADLYRTCKASNTCPPDVINTYEHKTVADKILQY FT GGAAVFLGGLNIGTATGRGGSGGYVPLGGRVGSGVTVGAGTRAVRPPIPLDVLGAAEVP FT PVDALAPSVVPLQEGLPEVPLLEVNPGETPGIPTVPLEVPVDTSGSSFDAGPVRVVVHA FT VVEPIPSSPPVRTSTSWSLHSNPAFDVVPSSDNALGETSSSSNIFVTHSNGGVSVGPSE FT EIPLRVFRTSTPKGTPTRPIAPRRGGYPQRFVEQVNISDLDVLERPGPRVQFEFDNPTF FT EGTLEFEPPPYPEVRAAPDPRFRDIVRLSSARFERAPSGHVRVGRLGVRGNITTRSGVQ FT LGSQAHFYHDISTLTFAEEIEMTGLGEHTGTTVMVSGGSESSFEVIDLDSSSLSSLSLT FT SNDLEAVLLGVEDIPNFDNVRLEFPRGRNRVSLDLPTNTLAFPSTVDIGNGVVVDYPGE FT GSGGIFGPFGPVPPLVIVDVERGSGSDYYLHPSLSLKRRRRRRRKSL" FT gene 5757..7259 FT /gene="L1" FT CDS 5757..7259 FT /codon_start=1 FT /gene="L1" FT /product="putative major capsid protein" FT /db_xref="GOA:Q0QLX1" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:Q0QLX1" FT /protein_id="ABC02208.1" FT /translation="MAVWVSNSQKLFLPPNPVTKVLHTDTYIKRTSVFCHAASDRLLTV FT GNPFFSILAEDKITVKIPKVSSNQFRVFRVTLPDPNQFAFAERPAHDPEKERLVWGLRG FT MDVGRGQPLGIGVTGHPLFNRYTDNENPGKYQQQMAQPKDSRQNVAFDAKQTQVLIVGC FT SPALGEHWSAARPCNGVKKKGECPPLELKNTYIQDGDMMEIGYGAMDHRGLSQNKSDAP FT LDTVFSITKYPDYLKMSKEASGDSMFFFARREQEYIRHFFSREGAVGEAVPEDLYFKPD FT GSEQQNNFSTAVYYGAPSGSLTSTDSQIFNRPYWLQRSQGLNNGICWLNQLFVTVGDTT FT RGTNMTITVANEEQSTYDSSKFTTYLRHTEEFELSFIFQLCIVPLTPDVLAHLHSLNSH FT ILDKWNIGLQAPTATLLEDRYRYLDSLATRCPDKAPPSPETDPYAGYSFWLVDLSEKFS FT QDLDQFPLGRKFLAQSSLPLNRKRSRSPSSTSKRSVKRKKNK" XX SQ Sequence 7801 BP; 1929 A; 1900 C; 2115 G; 1857 T; 0 other; ctagagaccg ttgcaaggcg ggctatggag cgtccatgga gccttgcaag cctctgcgtg 60 cgctcaggag tgtctctgtg cgcgataagc attccatgtg tgttttgtgg caatctgcta 120 agctttgaag accgcgtgtc atttgacttc aaagtccttc aagtgtcctg gaaaaacgga 180 cttccgcacg cctgttgcac gtcctgtgca aggagcattt gtagcagaga ggtgtcacag 240 tacacctcgg aggaaatatc ctacaggcaa tttgtgcaga gggtaggaca aggattttac 300 tggataccag tgaggtgcac atgctgtctc gggcttgtga ccaccacgca gaagatccaa 360 gcactctaca gaagacagaa gtttaaaaaa gtgagagggc ggtggcggac gctctgcaca 420 tattgtgcag aatctgataa tgattgggaa agacgctact ttgagagaca tcgttcttga 480 ggagcaaccc acaccagttg acaacctctg gtgtgatgag gagcttgcac agtctgatga 540 tgatgaggag gaggcgctca ccaatcagaa tctgaggcca ttcagaatac agacatcttg 600 tggcacctgc gaacgaggca ttaagattgt tgtgctctgc acccaggagg ggatacactg 660 cctagagaca ttgctgtgcc gaaacacatc attgtgctgt cccacctgcg ccgcgtccta 720 ccgctttgac catggagggt gacatagatt caggtaccga ccctgacgaa ggaacgagta 780 gggggggggg gtttatcttg cgggaggcag agtgtagtga tatggacaca agtgaggatg 840 atgcggagga cgagagttcg ggcgacttaa ttaatgatag cttagaggta caagtaagtc 900 aggggaattc ccaagcttta ttgcaccagc aaataatgag ggaggacaat aggcaggtgc 960 aggacctgaa aagaaagtat gtaagtccga aacagaaagt agaggcagag ttaagccctc 1020 ggctaagagc cataaagatt tcaccaccta agcagagtgc aaagcgcaga ctttttgcac 1080 acagtgtaga cagcgggctg gagtcatcgg gtcaaaatga aactagccat tctactccgg 1140 acagcgatca ggtagacgcg gtgatgctgg tgggggagga ggacgatcgc ctaggcagga 1200 ccccgacaca ggggctatac acgcgcgggg gatcacagac cctcattaca cagctaatgc 1260 gagcgtctaa ccaacgggcg acacagctcg ccctattcaa aaagggttac gggataagcc 1320 tgacagagct tacaagggta tttaaaagca ataagacatg caacccagac tgggtcgtgg 1380 tggcatttgg agtgcaccac aacacctata gcgatctagt gcataggttg gaaaagcatt 1440 gcgaatatgt gcagtgcagt ggtaatgcaa tcgcgacagg atatattgta cttatgcttc 1500 tcagatttac tgcacacaaa aataggaata cacttatcaa gctaatgaaa agcgtactaa 1560 gtgtgtcgga catccaaatt ctcgccgacc cacctaaaat taggagcgtc ccagcggcgc 1620 tatattggta cagaaacagt atgtcgaccg cagtgcaaag ccacggtcca cttccagact 1680 gggttgcacg gcagacatta gtgcagcatc acagcgggga ggacaacaag tttgtcctct 1740 ccactatggt ccagtgggcg tatgacaacg accacacaga ggagagcgat atagcctacc 1800 actatgcatt gctagccgac gaggacacaa atgcagcggc atggctaggt acaaactcac 1860 aggccaagca tgtcagggac tgcgcagtga tggtcaagca ttacaggcgt gccataatgt 1920 ctgccatgag tatgtccgaa tggataaaca gacgaatggg cctgatagag gaggaaggag 1980 actggaaaaa cataggcaat ttcctcagat accagggtat agaggttatt acatttatag 2040 gggcgctgag ggacatgtta aagggcattc caaaaaggac atgtatgtgt atagtgggac 2100 caccagacac agggaaatca gcgttttgcc ttagcctgct agacttcttc gggggtaggg 2160 tactgtcatt caccaattac aaaagccagt tctggctgca gccactggcc gacactagaa 2220 tagcccttat agacgacgcc accaagtcca cctgggacta catagacgaa tatatgagga 2280 acgcactgga cggaaacgct atatgcgtgg accttaagca taaaaaccct ttgcagatta 2340 ggtgtccgcc actgctcatt acaagtaata ttaacattaa acacaacgac agatggcgct 2400 atctatacag cagaatacat atagtggaat ttaagcatgc cttccccttt aacgaggagg 2460 gcgagcctgt ttaccaatta acaaaaggta actggaaatc atttttcaaa aggttgtggt 2520 tacgattaga cctaagtgat caagaagacg agggggaaga tggagagcct gaaaaaacgt 2580 ttagatgcga tacaagacga gctactgacc atttatgaag agggcagtga actgatatct 2640 gtgcaggtcc agcactggaa ccttctacgc aaggaaaatg tgctgatgca ctatgcaaaa 2700 aagtccgggg tcacgcggct aggtctgcag ccagtacctt cgctgcgagt gtcagccgag 2760 aaagcaaagc aagcaataga gatgcagctg acgctgcaga cattgcagga ctctccatat 2820 gccacggagc agtggacatt gcaggacacc agctatgaga gatggactac agagccatcc 2880 cattgcttta aaaaaggtcc aacaaccgtt gaggtgtact ttgacgggga cagggccaac 2940 gcaatgcact ataccatgtg gagtaaggtg tattacacgg atgtcaacga aaagtggcag 3000 aagacaaaga gcaacgtaga taatgatgga ctatggtttt gggacaattg cgaaaaacgc 3060 tattatgtgc ggtttagcga tgaggccgcc aagtatggca ccggacaaag gtgggacgtg 3120 gtaattaaca atgaacatat ttgccctccc gaatctgtca ccagcaccac accgaccaca 3180 aacgcttgtg cagagactga aggagctgct cacaggaaac ggcgacgggt ggccggagga 3240 ggtggaactg caggacctaa gaggcagagg ctccaagggt ccacacagac gacccgcagc 3300 gagaccgccg actccacaaa cacctccggt aacacccccc agctcccgca ggaggcggag 3360 gaggaagaga acgcccacca ggaggtccgg agactgggaa gacctccagc tgcaaggggc 3420 ttgctatttg acacctccgc tggggagtcc tgtgcgaacg ccggacgagt tctggttccc 3480 ggagccgggg gacaccccgc accccttgag cccgtgccca ggggcctcgc ctcccctgag 3540 ccagacgacc ccggagccct acagctaccc gtcgctccgg gacagggaca tacccctccc 3600 gaggccttcc ccgctgcccc tgccggacac gcgcccgacg ttgtacgagc agaagctggc 3660 cctggagagg gccctggacc aggtgtgcaa ggacgcgttt cagtgtctag tcgacgtcga 3720 ggcggacctc aaccgtttct tcgggaagct ggggatagct ccccatctgt gattgtactt 3780 gcgggaccgt gcaacacact taagtgcttc aggtaccggg ctaagaatct gcacagggga 3840 ctgtttgaac gcattagcac gacgtggtac tgggctgggg aagggtcgga cagaatcggg 3900 agtgcacgga ttttgctgac attctccggg aattcgcaga gggcagagtt cctgaaccgc 3960 gtgcggttgc ccccgaccgt gacctttcag agctccatct ttagtgattg accacgcctc 4020 ctaaatgact catgcttgct gaattctgca gagcagccat tttgcgcttt ccttaaaggc 4080 gccgcgcgca tgtcactgga cttatgcata cagccatagt tttgtatttg tacgtgtttt 4140 gttttatacc tttttgtact ttttgtactg tacgtctctc gcgcaggcgg cgtgtggcct 4200 gtcaccagtt gacttgtcat ggtccgtgcg cgtagaacaa agagagcgtc tgctgcagac 4260 ctctacagga cttgcaaagc aagcaacact tgccctcctg acgtaataaa tacatatgaa 4320 cacaaaactg tggctgataa gattttgcag tatggggggg cggcggtctt tcttggtggc 4380 ttgaacatag gaacggctac ggggcgaggt ggatctgggg ggtatgtccc gcttggtggt 4440 agggttgggt ctggtgttac tgtgggtgca gggacgcgtg ccgtccgtcc tcccattccc 4500 ttggacgttc ttggggcggc tgaggtacct cccgttgatg cgctggcgcc ctctgtggtg 4560 ccgctgcagg aggggttgcc ggaagtgccc ctgttggagg ttaatcctgg ggagaccccc 4620 ggcattccta cggtgccgct ggaggtccct gttgacactt cgggttcttc ctttgatgct 4680 ggacctgtgc gtgtggtcgt tcatgctgtg gtggaaccca tccctagctc gccacctgtc 4740 aggaccagca ccagttggtc actacattcc aaccccgcgt ttgatgtagt cccgagcagt 4800 gataatgctt tgggggaaac ttcttcctcc agcaacattt ttgttacaca cagcaatggc 4860 ggtgtgtctg taggaccttc agaggagatt cccctacgtg tgtttcgcac aagcacccct 4920 aaaggtacac ctacacggcc cattgctccc cgtagagggg ggtacccgca gcgatttgtg 4980 gagcaggtga atatatctga cttggatgta ttggagaggc cgggcccccg tgttcagttt 5040 gaattcgaca atccaacctt tgaggggacc cttgagtttg aacctccccc atatccggag 5100 gttcgggctg ccccggaccc tcgtttcagg gacattgtac gcctgtcctc tgcacggttt 5160 gaacgcgccc cgtccggaca tgttagggta ggtaggctgg gtgtccgtgg gaatatcacc 5220 acccgcagtg gcgtccagtt ggggtctcag gcacactttt atcatgatat aagtaccttg 5280 acatttgctg aggaaattga aatgacaggt cttggggaac acacgggcac tactgttatg 5340 gtctctgggg gttctgagtc atcgtttgag gtcattgacc ttgatagctc aagcttgtca 5400 tcgctgtcgc tgacctctaa tgatctggag gctgttttac tgggggtgga ggacataccc 5460 aattttgaca atgtccgtct tgagttcccc agagggcgta accgtgtgtc tttggatctg 5520 cctaccaata cccttgcttt tcccagcaca gtggacatcg gaaacggtgt agtggtcgac 5580 tatccggggg aaggttctgg gggtattttt gggccgttcg gccctgtgcc tcccctggta 5640 atagtggatg tggaacgtgg ttctgggagt gattattact tgcatccctc tttatccctc 5700 aaacgtaggc gccgtcgcag gcgcaaatca ttgtgatttt cctctttttt ttgcagatgg 5760 ccgtgtgggt ctccaacagc cagaagcttt tcctgccccc taacccagtc accaaggtcc 5820 ttcacactga cacctatatt aagcgtacat ctgttttctg tcatgcggcc tctgataggc 5880 ttttgactgt gggaaaccct ttttttagca ttctcgccga ggataaaatc acagttaaaa 5940 ttccaaaggt ttccagtaat cagttcaggg tgtttagggt tactctccct gatcctaatc 6000 agtttgcgtt tgctgagcgt cctgcacacg atcctgaaaa ggagaggttg gtatggggcc 6060 ttcgtgggat ggacgttggt cgtggacagc cacttggtat aggggtcact gggcatcctt 6120 tgttcaatcg gtacacagat aatgaaaatc caggcaagta tcagcagcag atggcccagc 6180 ctaaggattc cagacaaaat gtggcatttg atgcaaaaca aacccaggtt cttattgttg 6240 ggtgttcccc tgccctcggt gaacactggt ctgctgctag gccttgcaat ggagtcaaga 6300 aaaaaggtga gtgtcctcct ttggagctta agaacaccta cattcaggat ggtgacatga 6360 tggagattgg ctacggtgct atggatcaca ggggtctctc tcagaataag tccgatgcac 6420 ctctggacac tgtgttttct attaccaagt accctgatta ccttaagatg agtaaagaag 6480 ctagtggtga ctctatgttc ttttttgcaa ggcgtgagca ggaatatatt cggcattttt 6540 ttagcaggga gggtgcagtg ggggaggcgg ttcctgagga tttatatttt aagcccgatg 6600 gtagtgaaca gcaaaataac tttagcactg ctgtttacta tggggcgccc agtggatcgt 6660 tgacctctac ggattctcag atattcaacc gcccttattg gctgcagagg tcacaaggtc 6720 tgaacaatgg catctgctgg ctcaatcaat tgtttgtcac agttggtgac acgacccgtg 6780 gtaccaacat gacgatcact gttgctaacg aggaacagtc cacttatgat tctagtaaat 6840 ttacaaccta tttgaggcat acagaggaat ttgagctttc ctttatcttc cagctttgca 6900 ttgtgcccct cacccctgac gtgcttgcac atctgcacag ccttaactct catattttag 6960 ataagtggaa tattgggctg caggccccta ctgctacact gcttgaggat aggtaccgct 7020 atctggactc cctggccacg cgttgtccag acaaggcccc gccttcgcct gagaccgacc 7080 cctacgctgg ctactctttt tggcttgttg atctttctga aaagttttct caggatttgg 7140 atcagtttcc ccttgggcgc aagttccttg cgcagtctag cctccccctg aaccgtaaac 7200 gttcgcggtc gccatcttca acttctaaac gctctgttaa aaggaaaaaa aacaaataaa 7260 gcctattgct tttttttttc tacctttgcg tgctctgctt catgttttgg attgcagtgt 7320 cagcaccact cccacatcaa caaggtcccc catccaacat tccatgccca gaccgcgccc 7380 ggttgcaccc ggtgactaaa actttgcacc tggatatttt ggcaggacat ataaaccgct 7440 cccggtacac aacatcctag ccaagtcagg agtacacttt gctctgccaa ccaaagggat 7500 tagtgtcact ttgacgcgcc agctggcagg attagtgttt acctgattcg gttggcgcca 7560 atagttacta cctattccag accgtcagcg gtcggcgtcc tgcagaatca gcgagtgtgc 7620 aattgcgttg tcatggctac gtggattatg taaacgggag cggtgtttct gaccgccggc 7680 ggtacaggta agaacatatt atactcatat tgttgttaac aacaacaacc accgtatacg 7740 gttctttgga agaaccgcga acggtcgcgt tccgcatgcc aaaaaaagag gtatttattg 7800 a 7801 //