ID DQ192570; SV 1; circular; genomic DNA; STD; VRL; 5079 BP. XX AC DQ192570; XX DT 20-MAR-2006 (Rel. 87, Created) DT 20-MAR-2006 (Rel. 87, Last updated, Version 1) XX DE Crow polyomavirus, complete genome. XX KW . XX OS Crow polyomavirus OC Viruses; dsDNA viruses, no RNA stage; Polyomaviridae; Polyomavirus; OC unclassified Polyomavirus. XX RN [1] RP 1-5079 RX DOI; 10.1128/JVI.80.7.3523-3531.2006. RX PUBMED; 16537620. RA Johne R., Wittig W., Fernandez-de-Luco D., Hofle U., Muller H.; RT "Characterization of two novel polyomaviruses of birds by using multiply RT primed rolling-circle amplification of their genomes"; RL J. Virol. 80(7):3523-3531(2006). XX RN [2] RP 1-5079 RA Johne R., Muller H.; RT ; RL Submitted (05-SEP-2005) to the INSDC. RL Faculty of Veterinary Medicine, University of Leipzig, Institute for RL Virology, An den Tierkliniken 29, Leipzig 04103, Germany XX FH Key Location/Qualifiers FH FT source 1..5079 FT /organism="Crow polyomavirus" FT /host="Eurasian jackdaw (Corvus monedula)" FT /mol_type="genomic DNA" FT /collection_date="2005" FT /db_xref="taxon:349563" FT CDS join(283..405,476..718,803..889) FT /codon_start=1 FT /product="putative ORF-X" FT /db_xref="UniProtKB/TrEMBL:Q20HY6" FT /protein_id="ABB04263.1" FT /translation="METPMETDAGPGATPVGSETSNSSPQPPTPGRSPGAPQEQPAAEG FT GNTDHGATPTATPSSSETTSRPKADAVSTSTDGRTTSETLTPQSSPSNIDSPPSSPDLH FT DLPAPSYEGSCTCTFSLRASYDGRDHSYRPRNPPETPARTSRSRAT" FT CDS 929..1930 FT /codon_start=1 FT /product="putative VP2" FT /db_xref="GOA:Q20HY5" FT /db_xref="InterPro:IPR001070" FT /db_xref="UniProtKB/TrEMBL:Q20HY5" FT /protein_id="ABB04264.1" FT /translation="MGAVLAILSGLGEAAAATGFSIEAILAGEALAALEAQISALTVIE FT GLSEAEALTALGLTAETAGVIAGAPQALADAMGLALSGYTGLSGVPISAAFYHYFQGNP FT KKMALQVWTPNIDYLFPGVNSFVDALYHVNPLDWGPSLFRDLGQQIWDFIIQTGRRHLG FT DATRAAVEQSASTLFDLLARATESATWYVVETPVSTYRFLEDYYRQAPILRPDARRGLA FT IGMRDDILEPIPVPQRLEKVAEFPKLEEPSGQKVAPTLAPGGAHQRSCPDWMLPLILGL FT YGTVFPGWKAEVQLLENQEHGPQKTPRRRTLPRSQAPYQGRHRSLRSKNRSR" FT CDS 1247..1930 FT /codon_start=1 FT /product="putative VP3" FT /db_xref="GOA:Q20HY4" FT /db_xref="InterPro:IPR001070" FT /db_xref="UniProtKB/TrEMBL:Q20HY4" FT /protein_id="ABB04265.1" FT /translation="MALQVWTPNIDYLFPGVNSFVDALYHVNPLDWGPSLFRDLGQQIW FT DFIIQTGRRHLGDATRAAVEQSASTLFDLLARATESATWYVVETPVSTYRFLEDYYRQA FT PILRPDARRGLAIGMRDDILEPIPVPQRLEKVAEFPKLEEPSGQKVAPTLAPGGAHQRS FT CPDWMLPLILGLYGTVFPGWKAEVQLLENQEHGPQKTPRRRTLPRSQAPYQGRHRSLRS FT KNRSR" FT CDS 1830..2891 FT /codon_start=1 FT /product="putative VP1" FT /db_xref="GOA:Q20HY3" FT /db_xref="InterPro:IPR000662" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:Q20HY3" FT /protein_id="ABB04266.1" FT /translation="MGPKRPRAAGPSPVPRLLIKGGIEVLEVKTGPDSFTTIEAYLNPR FT MGLDYGFSEAITVAHTLNPDVPPKKQLPTYSCARIGLPELNDDMTKLQILMWEAVSCKT FT EVVGITSLTNLHSGMKRTVSGYGAGIPIEGLNLHFFAIGGEPLDLQGLVQNYTATYPEG FT VIAPKLADAKAQILDPTLKAKLDKDGTYPVECWSPDPSRNENTRYFGSYTGGTQTPPVL FT PIGNSVTTVLLDENGIGPLCKGDGLYISAVDIVGLYTAQYDETQYFRGLPRYFSVTLRK FT RVVKNPYPISSLLTSLFGNILPRMDGQPMQGKDGQVEEVRIYQGVEPLPGDPTLTRTVD FT RYGQNEPVLPHRE" FT CDS complement(join(2986..4578,4762..5079)) FT /codon_start=1 FT /product="putative large T antigen" FT /db_xref="GOA:Q20HY2" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003133" FT /db_xref="InterPro:IPR010932" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR017910" FT /db_xref="UniProtKB/TrEMBL:Q20HY2" FT /protein_id="ABB04268.1" FT /translation="MANNMRADIAELRQLLDLPKTASYEKIKAAYRRKALMYHPDKGGD FT EEKMKRLNQLMDVARKYDFSAETLQCEETLYSSDEEDVSPGPSQRPEDTGYESFSASFT FT DSGPAPEAAGGCSGSPPPTPGSGSFSTPPKSQREICLPADVEACLLAAKSIQSCPEGHL FT VVTTHQKLQELQSSLLNHFDTAGHLVCKWGTDFAIMLIILTTGTRISTVLNFCKKHCTV FT SPLCVRGLKKHCLQKLVEIFTNSPNYVVTDNALGKETLAGPFNYALLNDYACKQNISDA FT LFLLAVYKRMSVNPDECKDCKEDRENSSLQRLKRRRPGGHLEDHATHHMNAKMFLQLRE FT QKRACQEAVDAVLAERRFKTLTMTREEQFNERIECVLASMKEMLDSPQETNELCCAIYL FT LNFLIKDPKAICEIIKTLVRNPPKRRYFVFRGTVNTGKTTVAAAILNLLTGASLNINGN FT PDRLQFELGCAIDQMMVLFEDVKGEPEADYEPYLPRGMGMINLDNLRDHLEGAVPVNLE FT RKHQNKIAQIFPPGIITMNHYKIPLTVRVRCKNIMDFKRDPTFKKALQANPVVVQKRLL FT TRPEVLLGLLILADTEVIDKKQISCKSATCVECLKFEFDERWRYYGKLYEGESCFEQTD FT T" FT CDS complement(4579..5079) FT /codon_start=1 FT /product="putative small t antigen" FT /db_xref="GOA:Q20HY1" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003095" FT /db_xref="UniProtKB/TrEMBL:Q20HY1" FT /protein_id="ABB04267.1" FT /translation="MANNMRADIAELRQLLDLPKTASYEKIKAAYRRKALMYHPDKGGD FT EEKMKRLNQLMDVARKYDFSAETLQCEETLYSSDEEDVSPGPSQRPEDTGYESFSASFT FT DSVSALQFQHACTKITHLQNKLLMFFCYMDGRRKQCLAPEYRDLKKAYQGVPWTMFTEN FT CHF" XX SQ Sequence 5079 BP; 1373 A; 1224 C; 1099 G; 1383 T; 0 other; cctttgatgc tatagatagc aggatatgct aacagatatt gtggttagaa aacttttttt 60 ttccgctagt aaaacttgcc agagtctgct acagaaatga ggaaggcctc tgactcagcc 120 ggaataccat atatgggcac cttgcatttg gcagcctgcc ggccattact cattgggcca 180 tttaaatccc tagccggatt aagctgcccg ccaaaatatt gcgcgcgtgc gcctcctggg 240 gcggtagtga cggagcaaat gacacaataa cccggaagac caatggaaac accaatggaa 300 acagacgccg gacccggagc caccccggtg ggctccgaga cctccaactc cagcccccaa 360 cccccgacac cgggtagatc cccgggtgcc ccccaagagc aaccggtagg tgtgtcctga 420 tatgagtgcc attcactgaa tttaaatgta aacactgact aagctatatt tttaggcggc 480 ggagggcggg aacactgacc atggggctac gccaacggct actccaagtt cttcggagac 540 tacgtcaagg cctaaggcag atgctgtaag caccagtacc gacgggcgta ccacctctga 600 gaccctaacc ccccaatctt ctccatctaa cattgatagt cccccctcaa gccctgacct 660 gcatgatctg cctgctccat cctacgaagg ctcctgcacg tgtaccttca gcctaagagt 720 aggtacagaa atatgtgaca actgtaaagc ttggctcacg acaaactaac tgaaacagga 780 cccccctgtt aacactatcc aggcatccta tgacggacgg gaccactcct acaggcccag 840 gaatccacct gagacacctg caagaacctc cagatctcgt gccacctaga tctatctgga 900 tagacctgcc tgctactagt gtttaggtat gggggctgta ctggcaattc tgagtggttt 960 gggtgaagca gcagcagcta caggtttctc tatagaagct atattagcag gagaggcatt 1020 agcagcacta gaagcacaaa tatctgcatt aactgtaata gaaggcctat cagaagctga 1080 ggccctcaca gcactgggcc taacggctga aacagctggt gtaatagctg gagccccaca 1140 agctctagct gatgctatgg gccttgcatt atcagggtat acaggactat ctggagtacc 1200 catatctgct gctttctatc attacttcca gggtaacccc aagaaaatgg ctctgcaagt 1260 atggacaccc aacatagatt atctatttcc tggtgtaaat tcatttgttg atgctttata 1320 ccacgttaac cccctagact ggggcccaag cctcttccgg gacctcggcc agcagatttg 1380 ggactttatt atacagaccg gaagaagaca cttaggagat gccactcggg ctgctgttga 1440 acagtctgct tctactcttt ttgatttatt ggctagggct actgaaagtg caacatggta 1500 tgtggttgag acacccgtta gtacttatag gttcctagaa gactattaca gacaggcccc 1560 tatattaaga ccagatgcta ggcggggttt agctattgga atgagggatg acattctgga 1620 gcctatccca gtcccacaaa gactagagaa agtagcggaa tttcctaaac tagaggaacc 1680 ctcagggcag aaagtagctc caacacttgc accagggggt gcccaccaac ggtcatgtcc 1740 tgattggatg cttcctctaa ttctaggcct ctacgggaca gtattccctg gttggaaagc 1800 tgaggtacaa ctcctggaaa atcaagaaca tgggccccaa aagaccccgc gccgcaggac 1860 cctcccccgt tcccaggctc cttatcaagg gaggcataga agtcttagaa gtaaaaacag 1920 gtccagatag ttttacaacc attgaagctt accttaaccc ccggatgggc cttgattatg 1980 ggtttagtga agcaataact gtagcacata cccttaaccc tgatgtcccc cctaaaaaac 2040 agcttcctac ctatagctgt gctagaatag gcctcccaga attaaatgat gacatgacta 2100 aactccagat actgatgtgg gaggcagtat cttgtaaaac cgaggttgtt ggaataacat 2160 cccttactaa cctgcattca ggcatgaaaa ggacagtctc gggctatggt gctggaatac 2220 ctattgaagg acttaatctc catttctttg ctataggagg agaaccccta gaccttcagg 2280 gtcttgtgca aaactataca gctacctatc ctgaaggagt tatagctccc aagcttgcag 2340 atgccaaggc acaaattcta gatcccaccc ttaaagcaaa gcttgataag gatggtactt 2400 acccagtgga atgctggtct ccagatcctt ccaggaatga gaataccagg tattttggta 2460 gctatacagg aggaacacaa acacctcccg ttttgcccat aggtaactct gtaacaactg 2520 ttctccttga tgaaaatggg attggtcctc tctgtaaagg tgatgggctg tatatttctg 2580 ctgtagatat agtgggtctt tacacagctc agtatgatga gacccagtat tttagagggc 2640 tcccccgcta ttttagtgtc accctgagaa aaagggtagt gaaaaatcct taccctataa 2700 gctccttgct cacttccctc tttggtaata tcctcccccg gatggacggt cagccaatgc 2760 agggtaaaga tggtcaagtt gaagaggtca gaatctatca gggggtagag ccactgcctg 2820 gtgatccaac actaactagg actgttgacc gttatggaca aaatgaacca gtcctccccc 2880 atagggaata aaagttgtga aataaataaa cagagactca cattggctgt gtaaatgatt 2940 tattgctgtc taaataaagt aagagcatgc atgattaaac acgtactagg tgtctgtttg 3000 ttcaaagcat gattcaccct catacaattt tccataatat ctccatcttt catcaaactc 3060 aaatttcagg cattcaacac acgttgcact tttgcaggaa atctgctttt tgtcaatgac 3120 ctctgtgtca gctaaaataa gcagtcccaa gaggacttca ggacgggtca atagcctttt 3180 ttggacaaca accggatttg cctggagggc ctttttaaag gtcgggtcac gcttgaaatc 3240 cataatattt ttacatctga cccttactgt aaggggaatt ttatagtgat tcatggttat 3300 tattccagga ggaaatattt gagctatttt attttggtgc tttctttcaa ggttaacagg 3360 aactgcaccc tccagatggt ctcttaaatt atctaaattt atcatgccca ttcccctggg 3420 gagatatggc tcgtaatcag cctcaggctc gccctttaca tcctcaaaaa gcaccatcat 3480 ttggtctatt gcacagccca gctcaaattg caatctgtct ggatttccat taatgtttaa 3540 actggcacca gttagtaggt ttaagatagc agcagctaca gttgtcttgc cagtattaac 3600 agtacctctg aatacaaaat accttctttt aggggggttt ctcacaaggg tttttataat 3660 ttcacaaata gctttagggt ccttaattag aaagttaagt agatatattg cacaacaaag 3720 ctcatttgtt tcttgtggtg aatcaagcat ttctttcatg cttgccagaa cacattcaat 3780 cctttcatta aattgttcct cccttgtcat ggttagtgtt ttaaatcttc tttctgcaag 3840 cacagcatca acagcctctt ggcaagctct tttctgttcc cgtaattgta ggaacatttt 3900 ggcattcata tgatgggtgg catgatcctc cagatgccca ccaggcctcc tcctctttaa 3960 tctctgtagg gaagaatttt ccctatcctc cttacaatcc ttgcattcat cagggttaac 4020 agacatcctt ttataaacag ctaataaaaa caaagcatca ctaatattct gtttacaagc 4080 gtaatcattg agtaatgcat aattaaaagg tcccgccaaa gtctctttcc ctagggcatt 4140 atccgttacc acgtagttag gactgttagt aaatatttct actagctttt gtaaacaatg 4200 cttttttaga ccccttacac atagtggtga tacagtacag tgcttcttac agaaatttaa 4260 cacagtgctt attctagttc cagtggttag tattattagc attattgcaa aatcagttcc 4320 ccatttacac acaagatgcc cagcagtgtc aaagtggttc aaaaggcttg attggagttc 4380 ttgcagcttc tgatgggtgg tcaccacaag atggccctca gggcagctct ggatagattt 4440 agcagccaga agacaggcct ccacatctgc aggaagacat atctcacgtt ggctcttagg 4500 tggtgtactg aaggacccac tcccaggtgt tggtggtggt gatccagagc atcccccagc 4560 tgcttcaggt gcagggccct aaaaatgaca gttctcagta aacatagtcc atggcacccc 4620 ttggtaggcc ttttttaggt ctctatattc aggagcaagg cattgcttcc ttctgccatc 4680 catatagcag aaaaacataa gcagcttatt ttgtaagtga gtgatttttg tgcaggcatg 4740 ctgaaactgg agggcactta cactgtcagt aaagctggct gagaagctct catagccggt 4800 gtcctcaggc ctctgggaag gtccgggaga cacatcttct tcatcggatg agtagagcgt 4860 ttcttcacac tggagtgtct ctgccgagaa atcatacttt cttgccacat ccattaattg 4920 gttgaggcgt ttcattttct cttcatcacc ccctttgtca ggatgataca tcaaggcctt 4980 ccttctatag gctgctttga ttttctcata agatgcggtt tttggcagat caagcagctg 5040 cctgagctct gctatgtcag cccgcatgtt attagccat 5079 //