ID DQ098913; SV 1; linear; genomic DNA; STD; VRL; 7791 BP. XX AC DQ098913; XX DT 08-JUL-2007 (Rel. 92, Created) DT 08-JUL-2007 (Rel. 92, Last updated, Version 1) XX DE Bovine papillomavirus type 8, complete genome. XX KW . XX OS Bovine papillomavirus 8 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; OC Epsilonpapillomavirus. XX RN [1] RP 1-7791 RX DOI; 10.1099/vir.0.80086-0. RX PUBMED; 15269358. RA Ogawa T., Tomita Y., Okada M., Shinozaki K., Kubonoya H., Kaiho I., RA Shirasawa H.; RT "Broad-spectrum detection of papillomaviruses in bovine teat papillomas and RT healthy teat skin"; RL J. Gen. Virol. 85(Pt 8):2191-2197(2004). XX RN [2] RC Publication Status: Available-Online prior to print RP 1-7791 RX DOI; 10.1007/s11262-006-0055-y. RX PUBMED; 17265141. RA Tomita Y., Literak I., Ogawa T., Jin Z., Shirasawa H.; RT "Complete genomes and phylogenetic positions of bovine papillomavirus type RT 8 and a variant type from a European bison"; RL Virus Genes 35(2):243-249(2007). XX RN [3] RP 1-7791 RA Tomita Y., Literak I., Ogawa T., Jin Z., Shirasawa H.; RT "Complete genome and phylogenetic position of bovine papillomavirus type RT 8"; RL Unpublished. XX RN [4] RP 1-7791 RA Tomita Y., Literak I., Ogawa T., Jin Z., Shirasawa H.; RT ; RL Submitted (01-JUN-2005) to the INSDC. RL Molecular Virology, Chiba University School of Medicine, 1-8-1 Inohana, RL Chuo-ku, Chiba 260-8670, Japan XX FH Key Location/Qualifiers FH FT source 1..7791 FT /organism="Bovine papillomavirus 8" FT /host="cattle" FT /isolate="BAPV1" FT /mol_type="genomic DNA" FT /country="Japan" FT /db_xref="taxon:374077" FT CDS 106..510 FT /codon_start=1 FT /product="E6" FT /db_xref="GOA:A6XA91" FT /db_xref="InterPro:IPR001334" FT /db_xref="UniProtKB/TrEMBL:A6XA91" FT /protein_id="AAY86730.1" FT /translation="MPCFIPSYNFDGLDCLVCKRPLGSYDALKCKTNKFRRVHRDGHVY FT GMCCGCTELLLKIEREDNPWSLVCPHDFKKVFGRQVGDCIVRCYYCGCPLSDSEKDRHA FT LASEGYLFLRGKPRGRCYACASDGRRPCLY" FT CDS 485..859 FT /codon_start=1 FT /product="E7" FT /db_xref="GOA:A6XA92" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:A6XA92" FT /protein_id="AAY86731.1" FT /translation="MVAGPACTKNLPKEGEPVGGASGVTLLLSRITQPPFDSPDFASLH FT ESFKPGDGCFPKPASCQIVKQRVTLPPGIFFVTLQCPCTFPLRVAVRAGNGGIRDFQEL FT LTRNDFDLLCPHCASRHYGK" FT CDS 849..2630 FT /codon_start=1 FT /product="E1" FT /db_xref="GOA:A6XA93" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:A6XA93" FT /protein_id="ABD60067.1" FT /translation="MANNPGRLGGNCFILEEALCISTDTEGSDSEKENQDDADFVDNAP FT LAQGNTLALFQTQLSQAGKEKVNFLKGKLLGDAPRVNRRPLQSVDQNSFPAAKRRLFDL FT PGENEASPVSSPASQVRHSQSSTYSEDSSLHMQILKSKNSTACKLAIFKFVYAVSYCDL FT TRPFKNDRTTNNQWVAAVFGVSEELFSASKLLLGRECCYLQGTCRAHEKGSVGLLLLSF FT KVAKSRETVTNLLRNVLNVAGEHMLLQPPKIRGVTCALFWYKMSLSPHTYTCGTIPRWV FT EQQILLTENTSTALKFDFSQMVQWALDNEKTEECTIAFYYAQLADTDANARAWLSLNNQ FT AKIVKDVCTMVHHYQRAMMRNMTMSAYIHKMCQKVTGQGSWLVIMQFLQYQGIEPIRLV FT NCMKDWLKGIPKKNCIAIIGQPNTGKSLFTNSLTHFLQGKVLSFANSASHFWLSPLTEA FT KMALIDDATSACLKYCDTYLRNFLDGYSVCVDRKHRTSVQIKAPPLLVTSNIDIQAENK FT YSYLQSRVTCFYFNEQCPLDEEGKPVFTITDADWKSFFERLWERLELSDQEEEEEEGDD FT GSSGTFKCSSRNTNDFN" FT CDS 2575..3807 FT /codon_start=1 FT /product="E2" FT /db_xref="GOA:A6XA94" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:A6XA94" FT /protein_id="ABD60068.1" FT /translation="MAALERLNAAQETQMTLIENPSTKIEDHISYYGAVRTEQTLYCAA FT RRKHISRLGICPVPTLATATANARAAIEMQLVLKDLLQSPFAKDSWSLVDFSHERYKAP FT PTDTLKKHPRIVEVMFDGDPQNKTWHTLWGEIYMRTADGWTVTTSSADAKGIFCVMQGL FT REYYQLFAPDAERFGTRGTWDVFDQNRRFHFPPSSSSDRVDGVPDGPEPRGGDRPTSTP FT VAAEPDSPSRCVSRDLGRRGSGGPRCRWGTRVHPYVVPGGGGLLVSSCASSPLQSRVSP FT GAERHQEGGPRPPSPDSTEEDRRQAPVAAAGPPAGQFDLLQGTGCSPCVLIEGNGNKVK FT CLRYRLKRGHRHRFCHITTTFWATGDEGSDRQGNGTILVTFDSTSQRKLFLDHVSIPGE FT LTVRSVTISQD" FT CDS 3125..3499 FT /codon_start=1 FT /product="E4" FT /db_xref="UniProtKB/TrEMBL:A6XA95" FT /protein_id="ABD60069.1" FT /translation="MSLTKTDGFIFHHHPLAIVSTGSQTDQNHAEETGRPPHPSQPSLT FT LLLVACPETLEEEVAAAQGAVGEPACIPTLFLEAGGYWSLPVHHPHCKAVFRRVLNDTR FT KAALARHHRTRPRKTGGRHP" FT CDS 3867..3989 FT /codon_start=1 FT /product="putative E5" FT /db_xref="UniProtKB/TrEMBL:A6XA96" FT /protein_id="ABD60070.1" FT /translation="MRCLCILLVFCNLECTLWCCDFLLCLLLLYFLYELLARHF" FT CDS 4020..5582 FT /codon_start=1 FT /product="L2" FT /db_xref="GOA:A6XA97" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:A6XA97" FT /protein_id="ABD60071.1" FT /translation="MAVRVRRVKRANPYDLYRTCATGDCPQDVKDKFEHNTLADKILKW FT GSTGIFLGGLGIGTGQGRPGLGTYSPLGRGGGGGVSGRIPTRPSGSRPLGRPFNSGPID FT TIGAGGLRPSVESSVNSADVVALLPDSPSVVTPDSMPVDPGVGGLDIHAEVVEEPSLIF FT VEPHATEDVAVLDMNPAEHDQSVHLSSSTTHHNPSFQGHVTLYTDIGETSEVENLWIGG FT TSIGSNRGEEIQMQLFSTPRSSTPETEAIGRVRGRANWFSRRYYTQVSVRDPKFLEQPR FT EYFTYGFENPAYEPDPLEDSFDVSEVSPSVRVEPEFRDLTHVTAAKTLTGNTGRLGVSR FT VGTKLSIGTRSGVRIGGQVHFRYSLSTIADEEGLELLPRSAAEGSAGPLQHSAETVLTD FT GHDAYVEVDHNSTGSAYSEIDLLDEDEVTPHGVLVFHDRPAETDVVPITDVSYAIKPLS FT TIPGDDLLPSSTITMQNGPVHVDGQDNIVPDIIIIDFSVEGTYFLNTYAHPSLHKRKKR FT RLS" FT CDS 5595..7079 FT /codon_start=1 FT /product="L1" FT /db_xref="GOA:A6XA98" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:A6XA98" FT /protein_id="ABD60072.1" FT /translation="MAVWQQQGQRLYFPPNPVTKILCTEAYIKRTALFYHGETERLLTV FT GHPYFNLPDQNIPKVSGNQYRVFRVTLPDPNQFALPDKQFHNPSKEKLVWSIMGLQVSR FT GQPLGAPVTGHNLFNVWTDAENVTSKRATQGSDDRKQLGFDVKQSQILLVGCTPATGEY FT WGKAAECPEKRPAPGGCPPIELKNKPIEDGDMMDIGFGACDWKDFNGSVSDVPLDLVNS FT TSLYPDYLKMSEDALGNSCFFYARREQVYVRHVYGRGGEQKEGIPKEYTIPQQVPENKD FT TSFAFMGTPSGSLVSTDGQLFNRPYWLYQAQGLNNGVCWDNELFITVGDNSRGGVFHIT FT VPNNGQKPALYNSQNMNIYTRHVEEYKLAVILELCTVPLTPETVSYLQTVNPSVLENWE FT IGINPPPSSVLEDTYRFQSSKAIKCPDQPVAAKKDKYADLTFWHIDLREKLSVDLDQFP FT LGRRFLAQNGITCSARKRPSSSSKSATPSKKRKSTR" XX SQ Sequence 7791 BP; 2215 A; 1690 C; 1914 G; 1972 T; 0 other; aatgagaaga ggtttgttac agccaaaaac taagaatgct gggacaaaaa atttcacata 60 taaactgccg caccgctgaa ggtgctctca caaataggtg ggactatgcc atgcttcatc 120 ccctcctata attttgacgg cttagactgc ttagtgtgta aacgcccctt gggctcatac 180 gatgccttaa aatgtaaaac caacaaattc agaagagtgc atagagatgg acatgtttat 240 gggatgtgct gcggatgcac agagctgctg ctgaaaattg agagagaaga taacccctgg 300 tccttggttt gtcctcacga cttcaagaaa gttttcggca ggcaagtggg tgactgtatt 360 gttcggtgct attattgtgg ctgcccatta tcagacagtg agaaggatcg ccacgccttg 420 gcgagtgaag gctacttatt tctcagaggc aagccgagag gtcgctgtta cgcctgtgct 480 agtgatggtc gccggccctg cttgtactaa aaacttgcca aaagaagggg agcctgtagg 540 aggagcaagt ggagtgactc tcttgctttc gaggatcacg cagccccctt tcgatagccc 600 agactttgct tctctgcatg aaagcttcaa gcctggagat ggatgtttcc ccaagccagc 660 ctcttgccag atagtcaaac aaagagtcac attgcctcct gggatattct tcgttactct 720 gcagtgccct tgcacatttc cactgagagt ggctgtccga gctggtaatg ggggtattcg 780 agactttcaa gaactgctga caagaaacga ctttgatctt ctgtgtccac actgcgcctc 840 cagacattat ggcaaataat ccaggtagat tgggggggaa ttgctttatt ctggaggagg 900 ctttgtgcat aagtactgat acagagggca gtgatagtga gaaagagaat caggatgatg 960 ctgactttgt agacaacgcg cctttagcac agggaaatac cctggcccta ttccagaccc 1020 aactgtccca ggcgggaaaa gagaaagtaa actttctcaa aggaaaactc ctaggcgatg 1080 cgcccagagt aaataggagg ccgttgcagt ctgttgacca aaacagcttt cctgcagcta 1140 aaaggcgttt atttgacctg ccaggagaaa atgaagctag tcctgtttct tcgcccgcct 1200 cccaggtacg gcattctcag tctagcactt attctgaaga tagtagtctg cacatgcaga 1260 tacttaagtc caagaacagt acagcctgta aacttgccat atttaaattt gtgtatgctg 1320 tgagctactg tgatttaact aggcctttta aaaatgacag gactacaaac aatcagtggg 1380 ttgctgcagt gttcggtgtg tctgaggaat tattttctgc tagtaagtta ttattaggca 1440 gagagtgctg ctatttgcaa ggtacatgcc gagcacatga aaaagggtct gttggtttgc 1500 ttttactgtc ttttaaggtt gctaaaagta gagagacagt cacaaactta ttgagaaatg 1560 tcttgaatgt agcaggtgag catatgcttt tgcagccacc caaaatcaga ggggttacgt 1620 gcgctttgtt ttggtataaa atgagcttaa gtcctcacac ttacacctgt ggcactattc 1680 caaggtgggt ggagcaacaa attttactca cagaaaatac ttccactgcc ttaaaatttg 1740 acttttcaca aatggtgcag tgggcattag ataatgagaa aacagaagag tgcactattg 1800 ctttctatta tgctcaactt gcagacacag atgcaaatgc cagagcctgg ctgtcattaa 1860 acaatcaagc caaaatagtg aaagatgtgt gcacaatggt ccatcattac cagagggcaa 1920 tgatgcgcaa catgactatg tcagcataca ttcataaaat gtgccaaaaa gtgaccggcc 1980 agggctcgtg gttagtgatt atgcagtttt tacaatatca aggcattgaa ccaataaggc 2040 ttgtgaactg tatgaaagac tggctgaaag gcattcctaa aaaaaattgc atagcaataa 2100 taggccagcc taatacagga aaatcattat ttaccaatag cctcactcat ttcttgcaag 2160 ggaaagtgct aagctttgca aacagtgcga gtcacttttg gctatctccc ttaacagagg 2220 ctaaaatggc tttaatagat gatgctacta gtgcctgctt aaaatactgt gatacatacc 2280 tcagaaattt tttagatggg tactctgtgt gtgttgatag aaagcacagg acatcagtgc 2340 aaattaaagc tcccccattg ctagtaacta gcaatattga tattcaagct gaaaataagt 2400 attcatacct gcaaagcagg gtgacttgct tttattttaa tgagcagtgc cctttagatg 2460 aggaagggaa gccagttttt actataactg atgcagactg gaaatctttc tttgaaaggc 2520 tttgggagcg attagagctc agtgaccagg aggaggagga ggaggagggc gacgatggca 2580 gctctggaac gtttaaatgc agctcaagaa acacaaatga ctttaattga aaaccctagc 2640 actaagatag aagaccatat ttcatattat ggggctgtca ggacagaaca aactttatat 2700 tgtgcagccc gtcgaaaaca catatctcgg cttggaattt gccctgttcc caccctagca 2760 actgcaacag ccaatgccag agcagctatt gaaatgcagc tagtgttaaa agacttgttg 2820 caatcgcctt ttgcaaagga cagctggtca ctcgtggatt tcagccatga gagatataaa 2880 gctcctccaa cagacacttt gaaaaaacat cctagaattg tggaggttat gtttgatggt 2940 gacccgcaga ataaaacttg gcacacgctg tggggtgaaa tttacatgcg cactgcagat 3000 gggtggactg taaccactag tagcgctgat gccaaaggaa tattttgcgt gatgcaggga 3060 ctcagagagt attatcagtt gtttgcacct gacgctgaga ggtttggcac gcgtggaaca 3120 tgggatgtct ttgaccaaaa ccgacggttt cattttccac catcatcctc tagcgatcgt 3180 gtcgacgggg tcccagacgg accagaacca cgcggaggag accggccgac ctccacaccc 3240 gtcgcagccg agcctgactc tccttctcgt tgcgtgtcca gagaccttgg aagaagaggt 3300 agcggcggcc caaggtgccg ttggggaacc cgcgtgcatc cctacgttgt tcctggaggc 3360 ggggggctac tggtctcttc ctgtgcatca tccccactgc aaagccgtgt ttcgccgggt 3420 gctgaacgac accaggaagg cggccctcgc ccgccatcac cggactcgac cgaggaagac 3480 aggaggcagg cacccgtagc tgcagcaggg ccaccagcag gacaatttga ccttttacaa 3540 ggcactggtt gcagtccctg cgtcctaatc gaaggtaacg gcaacaaagt caaatgcttg 3600 cggtatagac tgaaaagggg gcaccggcat cggttttgcc atatcacaac cacattctgg 3660 gctactggag atgaggggtc ggacaggcaa ggaaatggca caatactagt gacttttgat 3720 tccacctcgc agcgaaaact tttcttggat catgtctcca tacctggtga actcacagtg 3780 cggtcagtga ccatcagtca ggactaacag acgcatttgg ttccagctca tttcaatcta 3840 ctggactaca tttcagcttt gtatgcatgc ggtgtctttg tattcttttg gtgttctgca 3900 atctggagtg cactctgtgg tgttgtgact ttttgttgtg tcttctttta ctgtattttt 3960 tatatgagct gctagcaagg catttctaag ttttgtattt tcagtaaaaa aattgtacca 4020 tggctgttcg tgtgcgtaga gtgaaaagag ccaacccata cgatctatac aggacctgtg 4080 caacagggga ctgtccacaa gatgtgaagg acaaatttga gcataacaca cttgcagaca 4140 agattttaaa atggggcagc acaggtattt ttcttggtgg tctgggtatt ggtacagggc 4200 aaggtaggcc tggcctagga acctatagcc ctttaggcag agggggcgga gggggtgtgt 4260 ctggcagaat acccactcga cccagtggga gtaggcctct gggtagacct tttaattcag 4320 gccctattga tactattggt gctggaggac taaggccttc agtagaaagc agtgtgaatt 4380 cagcagatgt tgtggcttta ttgcctgact ccccctctgt agtgacccct gacagcatgc 4440 ctgtggatcc tggtgttgga ggactagaca tacacgcaga agttgtagaa gaaccctctc 4500 tgatttttgt ggagcctcat gcaacagagg atgtagcagt gttagacatg aatcctgcag 4560 agcatgacca aagtgttcac ttatcttcca gcacaacaca ccacaaccca tcattccaag 4620 ggcatgtcac actttacact gacattgggg aaacttctga ggttgaaaac ctgtggattg 4680 gaggtaccag tattgggtca aaccgaggag aagaaattca aatgcagcta tttagtacgc 4740 ccagaagcag tacaccagaa acagaagcaa ttggccgggt caggggtcga gctaactggt 4800 ttagtagaag gtattacaca caggtttctg tacgcgaccc taaattctta gaacagcctc 4860 gtgagtattt tacttatggt tttgaaaacc ctgcatatga accagatcct ttagaggaca 4920 gttttgatgt gtcagaggtc agcccctcag taagggtgga gcctgaattt cgagacttaa 4980 cacatgtcac tgcagccaaa accttaacag gcaatactgg tcgacttggg gtgagtaggg 5040 tggggacgaa actgtccatt ggaacaagaa gtggtgtcag aataggcgga caagtgcatt 5100 ttagatactc tttaagcact atagctgatg aggaaggcct agaactgctt cccaggtctg 5160 ctgctgaagg gtcagctggc ccactgcaac attcagcaga aacagtttta acagatggac 5220 acgatgcgta cgtggaggtg gaccataaca gcacaggaag cgcatacagt gaaattgatc 5280 tattagatga agatgaagtc acccctcatg gtgttttagt atttcatgat agacctgcag 5340 aaacggatgt ggtccctatt acagatgtct catatgctat caagcctctg tcaacaatac 5400 ctggtgatga ccttttaccc agtagcacaa tcacaatgca gaatggtccc gtgcatgtag 5460 acgggcagga caacatagtc cctgatataa tcatcattga tttcagtgtg gagggcacat 5520 actttttgaa cacttatgca caccccagct tacacaaaag aaaaaaacgc aggctttcct 5580 aatttttttt gcagatggcg gtgtggcagc agcaaggaca gagactgtat ttccctccaa 5640 accctgtcac caaaatactg tgcacagaag catacataaa aagaacagca ttgttttatc 5700 atggagaaac agaaagacta cttacagtag gccaccctta tttcaacctg cctgatcaaa 5760 atattcccaa agttagtggc aatcaatata gggtgtttag agtgacactt ccagacccaa 5820 atcaatttgc ccttcctgac aaacaatttc ataatcccag caaggagaag cttgtttggt 5880 ccataatggg cctacaggta agtagagggc agcctttagg agcacctgtc acaggccata 5940 atttatttaa tgtttggaca gatgcagaaa atgtcacaag taaacgtgca acacaagggt 6000 cagatgacag gaagcaacta gggtttgatg tcaaacagag tcaaatactt ctagtgggct 6060 gtacaccagc cacaggtgaa tactggggca aagctgcaga atgtcctgaa aagcggcctg 6120 ctcctggagg ctgcccacct atagagctga agaacaagcc tatagaggat ggagatatga 6180 tggacatagg ctttggagca tgtgattgga aagatttcaa tggctctgtg tcagatgtac 6240 ctttagatct agttaactcc acaagcttgt atcctgatta tctaaaaatg tctgaggacg 6300 ctttaggaaa ttcctgcttt ttttatgcaa gaagggagca ggtatatgtt aggcatgtgt 6360 atggcagggg aggagaacaa aaagagggca taccaaagga gtacacaatt ccccagcagg 6420 taccagaaaa caaagacaca tcttttgctt ttatgggcac acctagcggc tctctagtct 6480 ccacagacgg acagttattt aacagaccat actggttata ccaagcgcag ggcctgaata 6540 acggtgtttg ctgggacaat gaactgttta taacggtagg tgacaatagc agaggaggtg 6600 tgtttcatat tactgttccc aataatggcc aaaaacctgc gctgtataac tctcagaaca 6660 tgaatattta cacaaggcat gtggaggaat ataagctggc tgtcatacta gagctttgca 6720 ctgtcccctt aactcctgaa actgtctcct acttgcaaac tgttaacccc tctgtgctag 6780 aaaactggga aataggaatt aatccccctc cttcttctgt tctagaggac acataccgct 6840 tccaaagctc taaagctatc aaatgtcctg atcagccggt agctgcaaag aaagataaat 6900 atgcagacct tactttctgg catattgatt tacgagaaaa actatcagta gatttggacc 6960 aatttccctt aggacgcagg tttttagccc aaaatgggat cacctgcagt gctcgcaaac 7020 gcccctcttc ctcaagtaag tctgcaaccc cttctaagaa gcggaaaagt acccgctaag 7080 gtttgtaaat tggtatgtat atagtgggct cgggtgggtc tcaataaaag ctcaatagta 7140 tgcgatgtgt catgtctttg tgcaccacac ccggtcgcgt tggcagagta tccctataaa 7200 atcttgcacc tggatagagt ctggcgcggg gacaaagagt cctggcgcca ggtctctttt 7260 ggcgcgcaaa ctgcacagct gcagtcagca agtaaaattg cagcgtcgac agaaacaagt 7320 tccagcgcgc caagcaccga taaaggtgct attgttgaag gtcggattag agcagctgta 7380 acggtgagta acaagggagg gcgccagcac cgcctgcgtt cgcaggggac acctaagggc 7440 accaaccgct gccggttcgc atgtataaat aggtcatgga tttaaattgg aactctggcg 7500 gtgcaatggc ggagcatcat ccgtttttaa ccaataaaaa ggaagtaaca cggaagcgac 7560 cgaagccggt tgcttccgtg ccgagtgcaa agaggtaggt aaaggagcat catccgtttt 7620 taaccaataa aaaggaagta acacggaagc gaccgaagcc ggttgcttcc gtgccgagtg 7680 caaagaggta agtaaaggcg ggaaagcctc agcaaccaat caatttaaag tacaccgctt 7740 tcggtgcacc gcctcggttt gtcctttttt ctaggagaga ttgttgttaa c 7791 //