ID DQ091200; SV 1; circular; genomic DNA; STD; VRL; 7542 BP. XX AC DQ091200; XX DT 13-MAY-2006 (Rel. 87, Created) DT 13-MAY-2006 (Rel. 87, Last updated, Version 1) XX DE Capra hircus papillomavirus type 1, complete genome. XX KW . XX OS Capra hircus papillomavirus type 1 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Phipapillomavirus. XX RN [1] RP 1-7542 RX DOI; 10.1016/j.virusres.2005.12.007. RX PUBMED; 16430985. RA Van Doorslaer K., Rector A., Vos P., Van Ranst M.; RT "Genetic characterization of the Capra hircus papillomavirus: a novel RT close-to-root artiodactyl papillomavirus"; RL Virus Res. 118(1-2):164-169(2006). XX RN [2] RP 1-7542 RA Van Doorslaer K., Rector A., Vos P., Van Ranst M.; RT ; RL Submitted (10-JUN-2005) to the INSDC. RL Laboratory of Clinical and Epidemiological Virology, Rega Institute for RL Medical Research, Minderbroedersstraat 10, Leuven 3000, Belgium XX FH Key Location/Qualifiers FH FT source 1..7542 FT /organism="Capra hircus papillomavirus type 1" FT /mol_type="genomic DNA" FT /country="Belgium" FT /isolation_source="healthy skin of a seven-year-old female FT goat" FT /note="ChPV-1" FT /db_xref="taxon:338903" FT gene 16..435 FT /gene="E6" FT CDS 16..435 FT /codon_start=1 FT /gene="E6" FT /product="E6" FT /db_xref="GOA:Q1I127" FT /db_xref="InterPro:IPR001334" FT /db_xref="UniProtKB/TrEMBL:Q1I127" FT /protein_id="AAZ39801.1" FT /translation="MTFVQPRRISDLATVLGLLPEELVLPCNFCRAPLSVQDLHLFDQK FT YFQLLYKYDGVYAFCSACARALAEAEHSRFCDIELSGSDMVAIVRAPLHRILVRCRKCF FT KLLSFVEKLGMIYCGLNFCSVRSWWRGVCRYCRQP" FT gene 432..710 FT /gene="E7" FT CDS 432..710 FT /codon_start=1 FT /gene="E7" FT /product="E7" FT /db_xref="GOA:Q1I126" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:Q1I126" FT /protein_id="AAZ39802.1" FT /translation="MIGLQPTLKDVELYPVDSIDLTCYETLSPEVGPEYYPYEIAGHCA FT RCNRGLRLYVCTTRPGIRKLEQQLLDDLSILCGTCGRDSFQHGGKKA" FT gene 691..2391 FT /gene="E1" FT CDS 691..2391 FT /codon_start=1 FT /gene="E1" FT /product="E1" FT /db_xref="GOA:Q1I125" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:Q1I125" FT /protein_id="AAZ39803.1" FT /translation="MEGKKPKGISFTSPFIIEEAECSDCDSDAENVQETETETDISFID FT NTVLEEGNTAQLFAQHQALDAAQEISAVKRKLPLTTERCPLGSLDSSLNKKGKLDDSGY FT AEADTAEVDEVDAGVSNSIEWVNASSEKGAKLAIFKQTYGVTFASLTRVFKSDKTCCHN FT WVVCVFSASEEVIEGSKIQLRQYCDFYYASVLLCKKGHCVLYLLDFKASKNRETVIRLF FT TSMLAVPDHCILSDPPKLKHVPAALFWLKTSNQPHVAVHGQLPNWICQQTMLNYENQQP FT QFELRKMVQWALDHNLTDDSMIAYNYAQLAEEDENANAWLNSNSQARYLKECALMTRHF FT LRAQRLEMTMAKWLTRCITSVRGNGDWKAIIKFLKYQNVNIVNFLSMFRDFMNSKPKKN FT CLVICGAPNTGKSIFAMSLMQFLQGKTISFANHKSHFWLQPLADCKFAVLDDATLPCWS FT YLDIYCRNALDGNYVCIDSKHKNPVQIKIPPLLITTNYNILQEDKFFYLHSRLLFLEFN FT NAFPLDEEGNPQFDLNDQNWKSFFIKLRRQLDLEDIEEEEENDSLGSTV" FT gene 2366..3937 FT /gene="E2" FT CDS 2366..3937 FT /codon_start=1 FT /gene="E2" FT /product="E2" FT /db_xref="GOA:Q1I124" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:Q1I124" FT /protein_id="AAZ39804.1" FT /translation="MTALEARFEEVQEKLLELLERNPETLDEQIEYWELVKWENIYYNA FT ARRKGIHKLGFSPVPSLQASEHGAKEAIGMKLQLTNLKSSGFGSEKWTLADTSSMTYLA FT PPKHTFKKLSKPVTVTFDSNSQNAVRYTCWSHVYYLNDNDMYVKSYSNVDVHGVYYIRD FT SRKQYYVNFEKDARKYSSTGQWDVSFENKHLSSSIASSSGHTATVATPETTVTSTQASA FT AAASAADSQEETPGSTRKLLTATYHRILRDRGSPRPASRSRSRSSTSTSSSGSSYRPGS FT RRSSSGRGARRSRGRSWRRTRSRSQSTERSRGGGGGRGRGRPRRSGLHSRPSRSPAPKG FT SGVPKRRPSVRAPQSYRGGSQQGTPPRPTAVSVASATPDIPRLSPWFRRRSHSTPRSPV FT RAPGRGSPPASLGSVRHHQSSQRKRSRSHERLHSAVKKDPYVILVRGKPNQLKCWRWRL FT HNRARRVPFRCFSTTFSWVSLVQGEKSIANRMLVVFDTRQDRELFLHRVTFPPGVTWCY FT GSLDCI" FT gene 2922..3689 FT /gene="E4" FT CDS 2922..3689 FT /codon_start=1 FT /gene="E4" FT /product="E4" FT /db_xref="UniProtKB/TrEMBL:Q1I123" FT /protein_id="AAZ39805.1" FT /translation="MCLLKTNICLHLLLAHPDTPPQSPPQKQQSPPRKRQPQQHPPQTP FT RKKHQDPRESFLPPPIIGYYVTGGHRDQPVGRDRDPPHQPPPQDPVIDLDPDDPPQDEE FT RGAVGGAVGGGRGPGRNPPRDPEEEEEDEDEEDPDDQGFIQGPRDPPPQRDQGYQSDGR FT QSVRLRATEGDRSRARHPGPQQFPWLLRPRIFHDSAPGSDDARTRLLGRLFEHLEEDLH FT QLRWAVFDTIKALKGNGPDPMKDYIPPSKRTLM" FT gene 4053..5636 FT /gene="L2" FT CDS 4053..5636 FT /codon_start=1 FT /gene="L2" FT /product="L2" FT /db_xref="GOA:Q1I122" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:Q1I122" FT /protein_id="AAZ39806.1" FT /translation="MVRAKRVKRASEDQLYRDCLAGRECKPDIKDKYENNTLADSILKW FT ASQFLWFGQLGIGTGRGSGGSGGYTRLGGGGGGSRTGVISRPPVVIDSIGPRDITPIDT FT VDPTASSIVPLNEGGPSVPTGEIEVIAETTPTTSNGALDPVIVGEPDLGPATIDVSSDP FT TPSNPVLNTTVSSSIHNNPSFDAAILSSQLPGEFSVPDQVVITHGLVGEHIGAFENIEL FT DTIGEYSGFGELEVEEPPSSSTPQTGLSARLSKNLKQLRQRLYNRRIQQRLVENQPFLT FT SPRRLVQFEYSNPSFQDEVSLEFERDINTVVEAPHYDFRDVVRLGRPESNLTDSGHVRV FT SRLGTLGTISTRSGLIIGGQVHYYTDLSSIAADTIELPSYQPAMSPSTIVHIDSAGETF FT NDMETSFCNVDQGIEEVERDLLDSASEDFSNSRLLLSTGSDIVDSGLDLQDIFQRPNLG FT EDSITVNFPTSNSIQVFNGSGAGSSIPATPIGPLGPVPIPAVLFNVLSSDLLLDPSLLR FT KRRKKYGVFS" FT gene 5645..7174 FT /gene="L1" FT CDS 5645..7174 FT /codon_start=1 FT /gene="L1" FT /product="L1" FT /db_xref="GOA:Q1I121" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:Q1I121" FT /protein_id="AAZ39807.1" FT /translation="MASYWTPSTGRVYLPPSTPLSKVLHTDDFVRRTSLFYHVKSERLL FT TVGNPYYEVKEPGTNKILVPKVNASQYRVFRVRLPDPNKFALSEPHIYDPDSERLVWKL FT LGMQIGRGQPLGISSTGHPFFNKFLDTENPMAQSQQNTDDRQNTSFDPKQIQMFIVGCT FT PCNGEYWEKALPCAEDAPPPKGACPPIELKSVLIQDGFMCDIGLGAMNFKTLQDTKSGG FT SLDIVAEPCYYPDFLKMTDDSYGNSCFFYGKREQLYSRHYFVRGGQRGEDVPEDHYLSG FT QAQARMGPIAYFTTPSGSLVTSESQILNRPYWLQRAQGTNNGICWNNQVFVTVVDTTRG FT TNFTISVRSDEEEVEAGQETYDQNKFKQYSRHVEEFELSFIFELGVVVLSPEVLAHLHN FT MDKNILDDWNLGVVAPPGTLEDQYRHINSQATKCPSDVPPTEKEDPYKGLTFWNVDLTD FT KFSSDLSQHSLGRKFLFQSNLQSRASKRPGSKRVSFKSGQPAKKRARKQTS" XX SQ Sequence 7542 BP; 2158 A; 1590 C; 1774 G; 2020 T; 0 other; agtggactca gcactatgac ttttgtgcag ccgcgccgaa tttctgacct ggctactgtt 60 ctgggtttac taccggagga attggtatta ccatgtaact tttgtagagc gcctctttca 120 gtgcaggatt tgcatttatt tgatcagaaa tactttcagc tattatacaa atatgatggt 180 gtttatgctt tttgctctgc ttgtgctaga gctcttgcgg aagcggaaca ttcgcgtttt 240 tgtgatatag agctttcagg atctgatatg gtagctattg tacgggctcc attacataga 300 attcttgtac gctgtagaaa atgctttaag ctactgtctt ttgtggagaa gcttggtatg 360 atatattgtg ggcttaattt ttgctctgta cgaagctggt ggcggggtgt gtgcagatac 420 tgtaggcagc catgattggg ttacagccta cactcaagga tgttgagctg tatcctgtag 480 atagcataga tctgacttgc tatgaaacat tgtctcccga ggtggggcct gagtattatc 540 catatgaaat tgcggggcat tgtgcaagat gcaatagggg actaaggctg tacgtgtgta 600 ctactagacc gggcattagg aagctggaac agcagctgct ggatgatctg agcattctct 660 gcggcacctg cggacgagac agtttccagc atggagggaa aaaagcctaa aggtatatct 720 tttacaagtc cttttatcat agaggaggca gagtgttcag actgtgattc agatgctgaa 780 aacgtgcaag aaactgaaac agaaacagat attagcttta tagataatac ggtattggaa 840 gagggtaaca ctgcccagct ctttgcacaa caccaagcat tagacgcagc ccaggaaatt 900 agcgctgtaa aacgaaagtt accgctcaca acggagagat gtcctttggg ctcacttgat 960 tcctcattaa ataaaaaagg aaaactagac gacagcggct atgctgaagc tgatactgcg 1020 gaggtggacg aggtagatgc aggggtttct aattctattg aatgggtaaa tgcatccagt 1080 gaaaaagggg ctaaattagc aatatttaag cagacatatg gggtaacatt tgcgtcgtta 1140 acgcgggtgt ttaagagtga taaaacgtgc tgtcataatt gggttgtgtg tgtgttttca 1200 gcgtctgaag aagtaataga gggctcgaaa attcaattaa gacagtattg cgacttttac 1260 tacgcatctg tacttctctg taaaaaaggg cattgtgtgt tatatttact agactttaaa 1320 gctagcaaga atcgggaaac agtaataagg cttttcacta gtatgctagc agttcctgac 1380 cactgcattt tatcagatcc acctaaatta aaacatgtgc cagccgcgct gttttggcta 1440 aaaacaagta accagcctca tgtggctgtt cacggacagc taccaaattg gatttgtcag 1500 caaacaatgc taaattatga aaatcagcag ccgcagtttg aactgcgcaa aatggttcag 1560 tgggctttag atcacaatct aacagatgac tctatgatag catacaatta tgcccaatta 1620 gcagaggaag atgaaaatgc taacgcatgg ctgaattcaa acagtcaggc gcggtatttg 1680 aaagagtgtg cattaatgac ccgccatttc ctcagagctc aaagattaga aatgactatg 1740 gcaaaatggc ttactaggtg tattacatct gttaggggaa atggggattg gaaagctatt 1800 attaagtttt taaaatatca aaatgtaaac atagttaatt tcttgagtat gtttagagac 1860 tttatgaata gcaagcctaa aaaaaactgc ttagtaattt gtggggcccc taacacaggg 1920 aaatctatat ttgctatgag tcttatgcag tttttacaag gcaaaacaat atcttttgct 1980 aaccataaaa gtcacttttg gcttcaaccg ttagctgact gcaagtttgc tgtattagat 2040 gatgctactt taccatgttg gtcatattta gatatatact gcaggaatgc tttagatggg 2100 aattatgtct gtatagacag taagcataaa aatcctgtgc aaatcaaaat tcccccactg 2160 ttaatcacaa ccaattataa cattttgcag gaagataagt ttttctactt gcatagtaga 2220 ctactatttt tagagtttaa caatgctttt cctttagatg aggaagggaa cccacagttt 2280 gatttaaatg accaaaattg gaaatctttt ttcataaaac ttaggagaca attagacctg 2340 gaggatatag aagaggagga agaaaatgac agccttggaa gcacggtttg aagaagtcca 2400 agaaaagctg cttgagttat tagagcgtaa ccctgaaaca ttagatgagc agattgaata 2460 ttgggaactg gtgaaatggg aaaacatata ctataatgct gcccgccgca aaggcattca 2520 caaattaggc tttagtccag tgccctcctt acaagcgtcc gaacatggcg cgaaagaagc 2580 cattgggatg aaactccagt taacaaactt gaaaagcagt gggtttggct ccgagaagtg 2640 gactctagca gacactagtt caatgacata cctagctccc ccaaaacata ccttcaaaaa 2700 gctgtcaaag ccagttactg ttacttttga tagtaactcc caaaatgcag tgcggtatac 2760 ctgttggtct catgtgtact atctgaatga taatgacatg tatgtgaaat cctattctaa 2820 tgtagatgtg catggtgtgt attatatacg agactctaga aaacagtact atgtgaactt 2880 tgaaaaagac gctcgcaaat actctagtac tggacagtgg gatgtgtctt ttgaaaacaa 2940 acatctgtct tcatctattg ctagctcatc cggacacacc gccacagtcg ccaccccaga 3000 aacaacagtc acctccacgc aagcgtcagc cgcagcagca tccgccgcag actcccagga 3060 agaaacacca ggatccacgc gaaagcttct taccgccacc tatcatcgga tactacgtga 3120 cagggggtca ccgcgaccag ccagtaggtc gcgatcgaga tcctccacat caacctcctc 3180 ctcaggatcc agttatagac ctggatccag acgatcctcc tcaggacgag gagcgaggcg 3240 cagtcggggg cgcagttggc ggcggacgcg gtcccggtcg caatccaccg agagatccag 3300 aggaggagga ggaggacgag gacgaggaag acccagacga tcagggcttc attcaaggcc 3360 ctcgagatcc cccgccccaa agggatcagg ggtaccaaag cgacggccgt cagtccgtgc 3420 gcctcagagc taccgagggg gatcgcagca gggcacgcca cccaggccca cagcagtttc 3480 cgtggcttct gcgaccccgg atattccacg actcagcccc tggttcagac gacgctcgca 3540 ctcgactcct cggtcgcctg ttcgagcacc tggaagagga tctccaccag cttcgttggg 3600 cagtgttcga caccatcaaa gctctcaaag gaaacggtcc cgatcccatg aaagattaca 3660 ttccgccgtc aaaaaggacc cttatgtaat tttggtgcga ggcaagccta atcaactaaa 3720 gtgctggcgt tggcgactac ataacagagc acggcgagtt cctttccgat gttttagcac 3780 taccttttca tgggtgtctt tggtacaagg ggaaaaaagt atagcaaatc gcatgttagt 3840 ggtgttcgac acacggcagg accgtgagtt gtttttacac agagtgacat ttcctcctgg 3900 ggtaacgtgg tgttatggga gtttggactg catttaaatc aagctgtttt ttattgtctg 3960 ccatttcatt tgtaaatatt gggagtgggt tttgattata gaagcatatg taacactatt 4020 cttcctttgc tattttttgt attacttgca taatggtgag ggctaaaagg gtgaagcggg 4080 cttccgaaga tcagttgtat cgtgactgct tggctgggcg agaatgtaag cccgatatta 4140 aagataaata tgaaaacaac accttggcag actccatatt aaaatgggct agtcaatttc 4200 tttggtttgg tcagctgggt attggaacag ggagagggtc cgggggaagc ggggggtaca 4260 ccagattggg aggggggggg ggggggagta ggactggcgt cataagccgg cccccggttg 4320 tcatagactc tatagggcct cgtgatatca caccaattga cactgtagac cccacagcat 4380 catccatcgt acccctcaat gaaggtggtc cgtccgttcc cacgggagaa attgaagtga 4440 tagccgaaac cactcccaca acaagtaacg gagcattaga tcctgttata gtaggcgagc 4500 ctgatttagg ccccgctact attgatgtta gtagtgatcc cactccaagt aacccagtac 4560 tgaacactac tgtttctagc agcattcata ataaccctag ttttgatgca gccattttaa 4620 gtagccagct acctggtgaa ttttcagttc ctgatcaagt agttattaca catgggttag 4680 tgggggagca cattggagca tttgaaaaca ttgagctaga cacaattggt gagtactctg 4740 gctttggtga gttagaagtg gaggaaccac catcctcaag caccccacaa acaggcttgt 4800 cagcacgctt aagtaaaaac ctcaagcagc tgagacagcg gctatacaat aggcggatac 4860 agcaaaggct agttgaaaat cagccttttt taacctcccc cagacgccta gtccagtttg 4920 aatacagtaa cccatcattt caggatgagg tttctttaga atttgaaaga gacataaaca 4980 ctgtggtgga agccccccac tatgatttca gagatgttgt caggttaggt aggcctgaaa 5040 gtaatttaac agacagtggc catgtaagag tgagcagatt aggcacctta ggtacaatct 5100 ctactcgatc tgggttaatt attggagggc aggtccacta ttacactgat ttaagcagca 5160 tagcagcaga cacaatagaa ctgccttctt atcaacctgc tatgtcacca agcactattg 5220 ttcacattga ctctgcgggg gaaacattta atgacatgga aacctcattt tgcaatgtag 5280 accaaggcat tgaagaagta gagcgtgacc ttttagactc tgcttctgaa gacttcagta 5340 atagcagact gctgctaagc acagggtcag acattgtaga ctcaggccta gaccttcagg 5400 acatctttca gaggcctaat ttgggggagg acagtattac agtgaatttc cctactagta 5460 attccattca ggttttcaat ggaagcgggg ctggaagcag cattccagct actcccatag 5520 gccctttagg ccctgttcca atacctgcag tgctgtttaa tgtgctgtct agtgatcttc 5580 tcttggatcc ttctttgctt cgtaaaagaa gaaagaaata tggtgttttc tcttaatttt 5640 acagatggct tcatactgga caccctcaac aggacgtgtt tacctgcctc cttctactcc 5700 tttatccaaa gtccttcaca ctgatgattt tgttcgaaga acaagtctgt tttatcatgt 5760 caaaagtgaa cggttactaa ctgttggcaa tccttattat gaggtcaagg aacctgggac 5820 taacaagatc ctagtgccaa aggtcaatgc atcacagtat agagtgtttc gggttaggct 5880 gccagacccc aacaagttcg cactgtcaga accccacatt tatgatccgg actcagaaag 5940 gcttgtttgg aagttactag gaatgcaaat aggccgaggt cagcctctgg gaattagcag 6000 cacaggtcac ccatttttca acaagttttt agacacagaa aaccctatgg cccaaagtca 6060 acaaaacact gatgacaggc aaaacacctc ttttgaccca aagcaaattc aaatgttcat 6120 tgtgggatgt accccgtgca atggtgaata ctgggaaaag gccttgccat gtgctgaaga 6180 tgctcctcct ccaaagggcg cctgcccccc aatagagctt aaatctgtgc taattcaaga 6240 cggctttatg tgtgatatag gtctgggagc tatgaatttt aaaacactcc aagacacaaa 6300 atctgggggt agcttagaca tagttgctga gccatgttat tacccagact ttttaaagat 6360 gacagatgat agttatggca actcctgctt cttctatggg aaacgagagc agctttactc 6420 cagacactat tttgtccgcg ggggtcaacg cggggaagat gtccctgagg accactattt 6480 aagcgggcag gcgcaggcgc gtatggggcc tatagcctat tttacaacgc ccagtggctc 6540 cttagttact agtgagtctc aaatattaaa tagaccatac tggttacaac gtgcccaagg 6600 tacaaataat ggaatttgtt ggaacaatca agtatttgtt actgtggtag acaccacacg 6660 agggacaaac ttcactattt ctgtacggtc tgatgaagag gaggtagaag ccgggcagga 6720 aacctatgat caaaataagt ttaaacagta ttcaaggcac gtagaagagt tcgagctgtc 6780 ttttattttt gagctggggg ttgttgtatt gtcccctgag gttcttgccc acttacataa 6840 tatggacaaa aatatcttag atgactggaa cttaggggtt gtggctcctc caggtactct 6900 tgaagaccaa tatcgccaca taaactccca agccactaag tgtccttcag atgtgccccc 6960 aactgaaaag gaagaccctt ataaaggact aaccttttgg aatgtagacc taacagacaa 7020 atttagcagt gacctgtccc agcattctct agggcgtaaa tttttgtttc aatccaatct 7080 gcaaagtaga gctagcaaac ggccggggtc taaaagagtt tcctttaaat ctggccagcc 7140 cgccaaaaaa cgcgctcgca aacaaactag ctagttgcag ttgcagctgc actgtaacgt 7200 cgccagtttt tggttgtgac taatgagttc ccagtaactg ttctgtgtgt gagacccttt 7260 tgtacgccaa aatttatcaa taaagtcttc aaaacttata aggtgtctaa tgctgctggt 7320 atgtgcgccg cccacattag cattgataat gatttgggtg tgatattaaa tattggctct 7380 tgctgcaggt gctttagttg gcactggaca cctgccagtt ggctgtaaaa agcgaaccct 7440 cccggtgtat ctgttaaggt aggtgccatg gttgttatct acaacgatcg tactggttat 7500 aacttgcacc ggtaaggttt ttttaaaagc catactactt aa 7542 //