ID DQ079879; SV 1; circular; genomic DNA; STD; PHG; 6259 BP. XX AC DQ079879; XX DT 25-JAN-2006 (Rel. 86, Created) DT 28-FEB-2006 (Rel. 87, Last updated, Version 2) XX DE Coliphage NC29, complete genome. XX KW . XX OS Escherichia phage NC29 OC Viruses; ssDNA viruses; Microviridae; Bullavirinae; Alpha3microvirus. XX RN [1] RP 1-6259 RX DOI; 10.1128/JB.188.3.1134-1142.2006. RX PUBMED; 16428417. RA Rokyta D.R., Burch C.L., Caudle S.B., Wichman H.A.; RT "Horizontal gene transfer and the evolution of microvirid coliphage RT genomes"; RL J. Bacteriol. 188(3):1134-1142(2006). XX RN [2] RP 1-6259 RA Rokyta D.R., Burch C.L., Caudle S.B., Wichman H.A.; RT ; RL Submitted (31-MAY-2005) to the INSDC. RL Biological Sciences, University of Idaho, PO Box 443051, Moscow, ID RL 83844-3051, USA XX DR MD5; 2d232f799eb8605c63410b750facfeff. XX FH Key Location/Qualifiers FH FT source 1..6259 FT /organism="Escherichia phage NC29" FT /mol_type="genomic DNA" FT /db_xref="taxon:338110" FT gene 762..2246 FT /gene="A" FT CDS 762..2246 FT /codon_start=1 FT /transl_table=11 FT /gene="A" FT /product="gpA" FT /note="Rf replication; viral strand synthesis" FT /db_xref="GOA:Q2LM31" FT /db_xref="InterPro:IPR008766" FT /db_xref="UniProtKB/TrEMBL:Q2LM31" FT /protein_id="AAZ49050.1" FT /translation="MATENFFDVVKTVWSHATAKHAHLRMAVQVDNRSRLLSDLVYQLE FT KRLSEETHLDDETYSLYESQTGFLEDHMSLVRKCAAQLDNSNTIDHRTSLDAECVFLFE FT MICPGVRYGKTLNSLWTKYVAQWPEKLIRQELDMVKPLSFKDEVARYMEKMQEKTRKNR FT MTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNENPNALRDYFRTVGRAVLRAEGRS FT VKDSYNDCYRYLCVPEFGGQHGRLHWHVVHMVRTLPLGSHDPNFGRKVRNYRQINSFRG FT MWPYGFTQPIAVRYQHDAYSRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQ FT KAITERQKKCKNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPL FT YQIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKNIRRLMKKTPEFNWQSSIASMTV FT TLKNGDISDEARQYIIDAGITPFDLRAKATQTFGGK" FT gene 1808..2161 FT /gene="B" FT CDS 1808..2161 FT /codon_start=1 FT /transl_table=11 FT /gene="B" FT /product="gpB" FT /note="capsid morphogenesis" FT /db_xref="GOA:Q2LM30" FT /db_xref="InterPro:IPR003513" FT /db_xref="UniProtKB/TrEMBL:Q2LM30" FT /protein_id="AAZ49051.1" FT /translation="MQESTYGNLSEKGIQSSQQPEARNGVTVDGASQQQSASGAESNQL FT RFQPSVSDSERERQKAIDLEHRRAAFARHFGCAPGSEKYVEKYPSFDEKDTRVQLAEFY FT RFNDGHLKKWGYF" FT gene 2161..2322 FT /gene="K" FT CDS 2161..2322 FT /codon_start=1 FT /transl_table=11 FT /gene="K" FT /product="gpK" FT /db_xref="UniProtKB/TrEMBL:Q2LM29" FT /protein_id="AAZ49056.1" FT /translation="MKHVNTLLMQELRLLICELKRLKLSAVSDPNFSQEKIHAELDSLL FT RKLSRYFD" FT gene 2273..2479 FT /gene="C" FT CDS 2273..2479 FT /codon_start=1 FT /transl_table=11 FT /gene="C" FT /product="gpC" FT /note="DNA maturation" FT /db_xref="GOA:Q2LM28" FT /db_xref="InterPro:IPR016407" FT /db_xref="UniProtKB/TrEMBL:Q2LM28" FT /protein_id="AAZ49052.1" FT /translation="MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQW FT FQIEDWKGNHKKLLDDLKNRHYI" FT gene 2713..3171 FT /gene="D" FT CDS 2713..3171 FT /codon_start=1 FT /transl_table=11 FT /gene="D" FT /product="gpD" FT /note="capsid morphogenesis" FT /db_xref="GOA:Q2LM27" FT /db_xref="InterPro:IPR004196" FT /db_xref="UniProtKB/TrEMBL:Q2LM27" FT /protein_id="AAZ49053.1" FT /translation="MSNLVATDVNFATSVAALKMLQASAVLDITEEDFDFLTGDKIWIA FT TDRNRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFT FT ENIVNGVERPVKAAELFAYTLRVKAGFKETVLSAEDNARQKLRASGVM" FT gene 2891..3121 FT /gene="E" FT CDS 2891..3121 FT /codon_start=1 FT /transl_table=11 FT /gene="E" FT /product="gpE" FT /note="cell lysis protein" FT /db_xref="GOA:Q2LM26" FT /db_xref="InterPro:IPR007605" FT /db_xref="UniProtKB/TrEMBL:Q2LM26" FT /protein_id="AAZ49054.1" FT /translation="MERWTLLDTLAFLLLLSLLLPSLLIMFIPSTFRRPVSSWKALSLR FT RTLLMASNVRLKPLNSLRTPCVLRLDSKKRF" FT gene 3173..3247 FT /gene="J" FT CDS 3173..3247 FT /codon_start=1 FT /transl_table=11 FT /gene="J" FT /product="gpJ" FT /note="core protein; DNA condensation" FT /db_xref="GOA:Q2LM25" FT /db_xref="InterPro:IPR006815" FT /db_xref="UniProtKB/TrEMBL:Q2LM25" FT /protein_id="AAZ49055.1" FT /translation="MKKARRSPSRKKGARLWYVGGSQF" FT gene 3281..4564 FT /gene="F" FT CDS 3281..4564 FT /codon_start=1 FT /transl_table=11 FT /gene="F" FT /product="gpF" FT /note="major coat protein" FT /db_xref="GOA:Q2LM24" FT /db_xref="InterPro:IPR003514" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:Q2LM24" FT /protein_id="AAZ49057.1" FT /translation="MSNVQTSAERIPHDLSHLVFEAGKIGRLKVVSWTPVVAGDSFELD FT MIGAIRLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIEFIKEGVNAPPLAPVQCSRGW FT DSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPSNMEGEDVRFGVRA FT CNLKTIWTAPLPPDTETSHSMETETNSIDIMGLQAAYAQLHTEQERDYFMTRYRDIVNE FT FGGSTSYDADNRPLLVMHSEFWASGYDVDGTDQSSLGQFSGRVQQTFKHSVPRFFCPEH FT GTMFTLALVRFPPTHEMEMHYLVGKENLTYTDLACDPALMANLPPREVNMSQFFHSGSA FT SAKFKIAEGQWYRMQPDRVALPYNYLDGFPFYSAIPSHDIKQRVLVNTDNYDEVFQSMQ FT LAHWNMQTKFNCTIYRNMPTTRDSIMTS" FT gene 4601..5146 FT /gene="G" FT CDS 4601..5146 FT /codon_start=1 FT /transl_table=11 FT /gene="G" FT /product="gpG" FT /note="major spike protein" FT /db_xref="GOA:Q2LM23" FT /db_xref="InterPro:IPR003515" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:Q2LM23" FT /protein_id="AAZ49058.1" FT /translation="MFQVYVAKHVAPFTSMNRTFSISPAAAPQVVNSGEIVAGRSTFRI FT ASSIGSASNGNGFAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYVPCVVRFESSFSQPG FT QFAIAEADFIPVESSALSARALSVRDCVTVDVKPRAEGNNVFVGLFLSSAAANAGNVTG FT VISMAQVDHEVTALQPLK" FT gene 5282..6259 FT /gene="H" FT CDS 5282..6259 FT /codon_start=1 FT /transl_table=11 FT /gene="H" FT /product="gpH" FT /note="minor spike protein" FT /db_xref="GOA:Q2LM22" FT /db_xref="InterPro:IPR006777" FT /db_xref="UniProtKB/TrEMBL:Q2LM22" FT /protein_id="AAZ49059.1" FT /translation="MLGAVVGGIASALAGGAASKLFGGKPASQAATESAGLSNGQGVIG FT MDQDAGIQSAIQGSNVPNGQIPAPTTTGGVMSDAGNMIKNAGKDLLDGVMTAGSDRVKQ FT ALIDRLGGNNAKRQGKATRDYLAAAFPELNAWERAGAVASGSGLESSSQDQQKELMRMQ FT LDNQKDIAKMQMQNNLQIAGIQSATSRQNTKDSVYAQNEMLQYNQRESQARVESILANT FT NLTDKQATHEIMRMALTRAQETGQHLTNSQIIALEKKVYAEIGKIHQDTQNSRYGSSQV FT TAAAKDVTNMITDAASGAADWASQQWNSFFKDGKSNGIPLNTRK" XX SQ Sequence 6259 BP; 1471 A; 1308 C; 1468 G; 2012 T; 0 other; ttattgacaa ctcccaatcc cttatgagac tcttgcttca attaaatgac gtaggagtct 60 ttttatgaaa cccgctcatc gccttactca tccaattctt ggttcttggt tgtttaagtg 120 tcctgtttat attcgttatg agtcgcttca tcatggtcgc cttatcaagg tccgtgctgt 180 tcgtgatttg tcccctcgtc aacgattgat tgctaatcct aagaattgct ttgacgttgt 240 tattgctgaa attgatctta cttatgaaac cgttacttgg tttgatttta tggatgagga 300 atatgccgcg tgtacccccg aggttatgca gcttctcatt tcctctattg actcttctga 360 tgttattcgt tctgtagaag acccgaccgt tgattcaggt gatatggatt ggctttatga 420 aattgtggag taatttatgg aaactgttat cggaaaattt attgctctgg ctgttgttgc 480 tcttatgctg tatggaattt cccgcttgat tagtaggact ttgaaatgaa gtattttagc 540 cttgtggatg aacactatgc ttattgccct gattcgcgca ttttgcacat cactcgtagt 600 cgtgtttctg accctcggta tgagcgtcgt tttcttactg atgaggagca tcttgcactt 660 ctggattggt tgaaaaatcg cccaacttat attaattctt gacaagtctt tgatacaccg 720 tctatattgc cctcatagtg attctacgag ggcttttttg catggctact gaaaacttct 780 tcgatgttgt taagaccgtc tggtcccacg ctacggctaa gcacgcccat cttcgtatgg 840 ctgttcaggt tgataaccgc agtcgccttc tctctgacct cgtttatcag ttggaaaaac 900 gtctttctga agaaactcat ctggatgatg agacttattc cctttatgaa tctcaaactg 960 gtttcttgga agaccatatg tctctggttc ggaagtgtgc tgcccaactt gataatagta 1020 acactataga ccaccgtacc tctttggatg ccgaatgtgt tttcctgttt gaaatgattt 1080 gcccgggtgt tcgctacggt aaaacgttga attctctttg gactaagtat gttgctcaat 1140 ggcctgagaa gttaattcgt caagagttag acatggttaa gcctttatcc tttaaggatg 1200 aggttgctag gtacatggag aagatgcagg aaaaaacacg caaaaatcgc atgactcaaa 1260 aagtaattaa tgagatgcgt attgctcacc aaaagggctg gtttttcgta tttgatactt 1320 tgacacttgc tgatgaccgt ttgcaggctt ttaatgaaaa ccccaatgct cttcgtgatt 1380 atttcaggac tgttggtcga gctgttctgc gcgctgaagg tcgttcggtt aaggattcct 1440 acaacgactg ctatcgctat ctttgtgtgc cggagtttgg aggtcagcac ggtcgtcttc 1500 attggcacgt tgtgcatatg gtgcggactc ttcctttggg aagtcacgac cctaatttcg 1560 gtcgcaaggt acgtaattat cgccagatta actcgttccg tggcatgtgg ccttatggct 1620 tcacgcaacc gatagctgta cgctatcaac atgatgctta ttctcgcaaa ggttggttgt 1680 ggcctgttga caaatcaggt aaagcaatgc agagtaagcc ctatcaggcg gtcgcatggt 1740 atgtgaccaa gtatgtagcc aagcaatctg accagcgtca gaaagctatt actgagagac 1800 aaaaaaaatg caagaatcca cttatggcaa tctgtctgaa aaaggaattc agagttcgca 1860 gcagccggaa gctcggaatg gagttaccgt cgatggcgca tctcagcaac aaagtgcttc 1920 tggagctgag tcgaatcagc ttcgattcca gccctctgta tcagatagtg aaagagaacg 1980 ccaaaaagca attgaccttg aacatcggcg cgctgccttt gcacgtcatt ttggatgtgc 2040 gcccggaagt gagaagtatg ttgaaaaata tccgtcgttt gatgaaaaag acacccgagt 2100 tcaattggca gagttctatc gcttcaatga cggtcacctt aaaaaatggg gatatttctg 2160 atgaagcacg tcaatacatt attgatgcag gaattacgcc ttttgatttg cgagctaaag 2220 cgactcaaac tttcggcggt aagtgacccg aatttttctc aggagaagat tcatgctgag 2280 ctcgactcgt tactacgcaa gttatcgcgc tactttgact aagcagctta tgtttttgac 2340 taaagctgac tttaccaatg atgatgaaaa atggcttaat gcctttggta atttgctccg 2400 tcagtggttt cagattgagg attggaaagg taatcacaaa aaattgcttg acgatttgaa 2460 aaacaggcat tatatttaac tcatagataa atgaagcagt ggtgcaaagt agtttatcta 2520 agtggtaagt tcagtgaagg gtgacccgct ctaagtagct gaagggtgtt ggatgtaagg 2580 actccgcgat tgactggttt atactggaac actatcgggt cagtgaagtg gctgctgaga 2640 aatagccctc tagctttacg aagactaggc tacatcgcga acaccattgt tactttttta 2700 tggaggattt atatgtctaa tcttgttgct accgatgtta attttgctac ctctgttgct 2760 gctctgaaga tgcttcaggc ttctgctgtt cttgatatca ctgaggaaga tttcgatttt 2820 ctgactggtg ataagatttg gattgctact gaccgcaatc gtgctcgtcg ttgtgttgag 2880 gcgtgtgttt atggaacgct ggactttgtt ggataccctc gctttcctgc tcctgttgag 2940 tttattgctg ccgtcattgc ttattatgtt catcccgtca acattcagac ggcctgtctc 3000 atcatggaag gcgctgagtt tacggagaac attgttaatg gcgtcgaacg tccggttaaa 3060 gccgctgaac tctttgcgta caccttgcgt gttaaggctg gattcaaaga aacggttctg 3120 agtgctgaag ataatgctcg tcagaaactt cgtgcaagtg gagttatgta atatgaaaaa 3180 ggctcgtcgt tctccttctc gtaagaaagg tgcccgtctc tggtatgtag gcggttctca 3240 attttaatta atgggcttcg gcccctataa ggatttttaa atgtcaaatg tacaaacttc 3300 cgctgagcgt atccctcatg acctgtctca tctggttttt gaagcaggca aaattggtcg 3360 tttaaaagtt gtttcttgga ctcctgttgt tgcaggtgat tcttttgagc ttgatatgat 3420 tggcgctatt cgcctctccc cgcttcgtcg tggtcttgct gttgactctc gcgttgactt 3480 gttcacgttt tatgttcctc atcgtcatgt atatggtgag cagtggattg agtttattaa 3540 ggaaggtgtc aatgctccac cgttggctcc tgttcagtgc tctcgtggtt gggatagtgc 3600 gcagtatctc gctactattc cgtcttctaa cttaaaggtt cctaagttcc ttcatcaagg 3660 ttacttgaac atttacaata actattttaa agctccgtgg atggatgact tgacttatgc 3720 caacccatct aatatggaag gtgaagatgt tcgttttggt gttcgtgcat gtaatttaaa 3780 aactatctgg actgctccgc ttcctccaga tactgagact tctcattcta tggagaccga 3840 gaccaactcc attgacatta tgggtttaca ggccgcttat gctcaattac ataccgagca 3900 ggagcgtgat tacttcatga ctcgttatcg tgatattgtt aacgaatttg gtggtagtac 3960 ttcttatgat gcggataatc gtcctttgct tgttatgcat tctgagttct gggcctcagg 4020 ctatgacgtc gacggcaccg accaaagctc tctcggtcag ttctccggtc gtgttcagca 4080 gacgtttaag cattcagtac cgcgattctt ctgtcctgag catggcacta tgttcacact 4140 cgcattggtc cgcttccctc cgactcatga aatggagatg cattacttag ttggtaaaga 4200 aaatttgact tatactgatc tggcttgtga tcctgctttg atggctaact tgcctccgcg 4260 tgaggttaat atgtctcagt tcttccattc tggaagtgct agtgctaagt ttaagatcgc 4320 tgagggtcag tggtatcgta tgcagcctga ccgcgttgca ttgccgtata actatcttga 4380 tggttttccg ttctatagtg cgattccgtc tcatgatatt aagcagcgtg ttctggttaa 4440 tactgataac tatgatgagg ttttccagtc tatgcagctt gcacactgga atatgcagac 4500 taagtttaac tgcacgattt atcgtaatat gccgaccact cgtgattcta ttatgacctc 4560 ttgattatgt ggggcttcgg ccccctttaa ggatttgatt atgtttcaag tttatgtagc 4620 taagcatgtt gctcctttta cttctatgaa ccgtaccttt tctatctctc ctgctgctgc 4680 cccgcaggtt gtcaattctg gtgagattgt tgcaggtcgt tctacttttc gtattgcttc 4740 ctctattggt tctgcttcta atggtaatgg tttcgcattc gttcagatga tggaccctaa 4800 ctctcctgat tctcaacagg ttttctctgt tgctgcgtcg ctatctttta gtgttgactc 4860 gaattatgtt ccttgcgttg ttcgttttga aagtagtttc tctcagcctg gtcaatttgc 4920 tattgctgag gctgatttta ttccggttga gtcgtcagct ctttctgctc gtgcgcttag 4980 cgttcgtgat tgtgttactg ttgatgttaa gcctcgcgct gaaggtaata atgtttttgt 5040 tggactgttc ttgtcttctg ccgccgctaa tgctggtaat gttactggtg tcatttctat 5100 ggctcaggtt gaccatgaag ttacagcttt gcagcctctt aaataaaagg ccgccgcact 5160 ctcggttata tgcctgccca gtgtagggcg gaccgagccg tacggagata cccgtgaaac 5220 taggaacgtg gaaggcgtta gccgccttcc ctcctgctaa gcccaaagga gactttcagc 5280 tatgttaggt gccgttgttg gtggtattgc ttcagcctta gccggtggag cagcttctaa 5340 gttgtttggt ggtaagcctg cctctcaggc cgctaccgaa tccgctggcc tttctaatgg 5400 tcaaggtgtt attggtatgg accaagatgc cggtattcag tccgctattc agggttcaaa 5460 tgtcccaaat ggtcagattc ccgctcctac tactacaggt ggcgttatgt ctgatgctgg 5520 taatatgatt aagaatgctg gtaaagattt gcttgatggt gttatgactg ccggtagtga 5580 ccgtgttaag caggctttga ttgacagatt gggtggtaat aatgcaaaga gacaaggaaa 5640 agcaacccgt gattacttgg ctgcagcctt ccctgaactc aatgcatggg aacgtgctgg 5700 agctgttgct tccggctccg gcttggaatc ttccagtcag gaccagcaga aagagttgat 5760 gcgaatgcag ctggacaatc agaaagatat tgcgaagatg cagatgcaga ataatttgca 5820 gattgctggt attcagtccg ctacttctcg tcaaaatacg aaggattctg tttatgctca 5880 gaatgagatg cttcagtaca atcaacgtga gtcacaggca cgtgttgagt ctatccttgc 5940 caacactaac cttacggata aacaggctac ccatgaaatc atgaggatgg cccttactcg 6000 tgctcaggag actggtcagc atttgactaa ctctcagatt attgctttgg agaaaaaggt 6060 ttatgcagaa attggaaaaa ttcatcaaga tactcaaaac tctcgctatg gtagctctca 6120 agttactgct gcggcgaaag atgttacgaa tatgattacc gatgccgcct caggtgctgc 6180 tgattgggcc tctcagcaat ggaattcgtt cttcaaggat ggtaagtcta atggcattcc 6240 tcttaacacc agaaaataa 6259 //