ID DQ079878; SV 1; circular; genomic DNA; STD; PHG; 6097 BP. XX AC DQ079878; XX DT 25-JAN-2006 (Rel. 86, Created) DT 28-FEB-2006 (Rel. 87, Last updated, Version 2) XX DE Coliphage NC3, complete genome. XX KW . XX OS Enterobacteria phage NC3 OC Viruses; ssDNA viruses; Microviridae; Bullavirinae; Alpha3microvirus; OC unclassified Alpha3microvirus. XX RN [1] RP 1-6097 RX DOI; 10.1128/JB.188.3.1134-1142.2006. RX PUBMED; 16428417. RA Rokyta D.R., Burch C.L., Caudle S.B., Wichman H.A.; RT "Horizontal gene transfer and the evolution of microvirid coliphage RT genomes"; RL J. Bacteriol. 188(3):1134-1142(2006). XX RN [2] RP 1-6097 RA Rokyta D.R., Burch C.L., Caudle S.B., Wichman H.A.; RT ; RL Submitted (31-MAY-2005) to the INSDC. RL Biological Sciences, University of Idaho, PO Box 443051, Moscow, ID RL 83844-3051, USA XX DR MD5; 6876448c96fc8fc0a1b583b2d1a1b838. XX FH Key Location/Qualifiers FH FT source 1..6097 FT /organism="Enterobacteria phage NC3" FT /mol_type="genomic DNA" FT /db_xref="taxon:338109" FT gene 759..2243 FT /gene="A" FT CDS 759..2243 FT /codon_start=1 FT /transl_table=11 FT /gene="A" FT /product="gpA" FT /note="Rf replication; viral strand synthesis" FT /db_xref="GOA:Q2LM41" FT /db_xref="InterPro:IPR008766" FT /db_xref="UniProtKB/TrEMBL:Q2LM41" FT /protein_id="AAZ49040.1" FT /translation="MATEIFSDVVKAVWSHATAKHAHLRLAVQVDNRSRLLSDLVHQLE FT KRLSEETHLDDETLAVYEYQTALLEDHMALVRKCAAQLDNSNTIDHRTPLDAECVFLFE FT MICPGVRYGKTLNSLWTKYVAQWPEKLIRQELDMVKPLSFKDEVAKYMEKMQEKTRKNR FT MTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNENPNALRDYFRTVGRAVLRAEGRS FT VKDSYNDCYRYLCVPEFGGQHGRLHWHVVHMVRTLPLGSHDPNFGRKVRNYRQINSFRG FT MWPYGFTQPIAVRYQHDAYSRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQ FT KAITERQKKCKNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPL FT YQIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKNIRRLMKKTPEFNWQSSIASMTV FT TLKNGDISDEARQYIIDAGITPFDLRAKATQTFGGK" FT gene 1805..2158 FT /gene="B" FT CDS 1805..2158 FT /codon_start=1 FT /transl_table=11 FT /gene="B" FT /product="gpB" FT /note="capsid morphogenesis" FT /db_xref="GOA:Q2LM40" FT /db_xref="InterPro:IPR003513" FT /db_xref="UniProtKB/TrEMBL:Q2LM40" FT /protein_id="AAZ49041.1" FT /translation="MQESTYGNLSEKGIQSSQQPEARNGVAVDGASQQQSASGTEPNQL FT RFQPSVSDSERERQKAIDLEHRRAAFARHFGCAPGSEKYVEKYPSFDEKDTRVQLAEFY FT RFNDGHLKKWGYF" FT gene 2158..2319 FT /gene="K" FT CDS 2158..2319 FT /codon_start=1 FT /transl_table=11 FT /gene="K" FT /product="gpK" FT /db_xref="UniProtKB/TrEMBL:Q2LM39" FT /protein_id="AAZ49046.1" FT /translation="MKHVNTLLMQELRLLICELKRLKLSAASDPDFSQEKIHAELDSLL FT RKLSRYFD" FT gene 2270..2476 FT /gene="C" FT CDS 2270..2476 FT /codon_start=1 FT /transl_table=11 FT /gene="C" FT /product="gpC" FT /note="DNA maturation" FT /db_xref="GOA:Q2LM38" FT /db_xref="InterPro:IPR016407" FT /db_xref="UniProtKB/TrEMBL:Q2LM38" FT /protein_id="AAZ49042.1" FT /translation="MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQW FT FQIEDWKGNHKKLLDDLKKRDYI" FT gene 2550..3008 FT /gene="D" FT CDS 2550..3008 FT /codon_start=1 FT /transl_table=11 FT /gene="D" FT /product="gpD" FT /note="capsid morphogenesis" FT /db_xref="GOA:Q2LM37" FT /db_xref="InterPro:IPR004196" FT /db_xref="UniProtKB/TrEMBL:Q2LM37" FT /protein_id="AAZ49043.1" FT /translation="MSNFVATDVNFATSVAALKMLQASAVLDITEEDFDFLTGDKIWIA FT TDRNRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFT FT ENIVNGVERPVKAAELFAYTLRVKAGFKETVLSAEENARQKLRASGVM" FT gene 2728..2958 FT /gene="E" FT CDS 2728..2958 FT /codon_start=1 FT /transl_table=11 FT /gene="E" FT /product="gpE" FT /note="cell lysis protein" FT /db_xref="GOA:Q2LM36" FT /db_xref="InterPro:IPR007605" FT /db_xref="UniProtKB/TrEMBL:Q2LM36" FT /protein_id="AAZ49044.1" FT /translation="MERWTLWDTLAFLLLLSLLLPSLLIMFIPSTFRRPASSWKALSLR FT KTLLMASSVRLKPLSSSRTPCVLRPDSKKRF" FT gene 3010..3084 FT /gene="J" FT CDS 3010..3084 FT /codon_start=1 FT /transl_table=11 FT /gene="J" FT /product="gpJ" FT /note="core protein; DNA condensation" FT /db_xref="GOA:Q2LM35" FT /db_xref="InterPro:IPR006815" FT /db_xref="UniProtKB/TrEMBL:Q2LM35" FT /protein_id="AAZ49045.1" FT /translation="MKKARRSPSRKKGARLWYVGGSQF" FT gene 3119..4402 FT /gene="F" FT CDS 3119..4402 FT /codon_start=1 FT /transl_table=11 FT /gene="F" FT /product="gpF" FT /note="major coat protein" FT /db_xref="GOA:Q2LM34" FT /db_xref="InterPro:IPR003514" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:Q2LM34" FT /protein_id="AAZ49047.1" FT /translation="MSNVQTSAERIPHDLSHLVFDAGKIGRLKVVSWTPVVAGDSFELD FT MIGAIRLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIEFMKQGVDAAPLAPVECSRGW FT DSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPSNMEGEDVRFGVRA FT CNLKTIWTAPLPPDTETSHSMETETNSIDIMGLQAAYAQLHTEQERDYFMTRYRDIVNE FT FGGSTSYDADNRPLLVMHSEFWASGYDVDGTDQSSLGQFSGRVQQTFKHSVPRFFCPEH FT GTMFTLALVRFPPTHEMEMHYLVGKENLTYTDLACDPALMANLPPREVNMSQFFHSGSA FT SAKFKIAEGQWYRMQPDRVALPYNYLDGFPFYSAIPSDDIKQRVLVNTDNYDEVFQSMQ FT LAHWNMQTKFNCTIYRNMPTTRDSIMTS" FT gene 4439..4984 FT /gene="G" FT CDS 4439..4984 FT /codon_start=1 FT /transl_table=11 FT /gene="G" FT /product="gpG" FT /note="major spike protein" FT /db_xref="GOA:Q2LM33" FT /db_xref="InterPro:IPR003515" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:Q2LM33" FT /protein_id="AAZ49048.1" FT /translation="MFQVYVAKHVAPFTSMNRAFSISPAADPQVVNSGEIVAGRSTFRI FT ASSIGSASNGNGFAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYVPCVVRFESSAAQPG FT RFAISEADFIPVEASALSARALSVRDCVTVDVKPRTEGNNVFVGLFLSSAAANAGNVTG FT VISMAQVDHEVTALQPLK" FT gene 5120..6097 FT /gene="H" FT CDS 5120..6097 FT /codon_start=1 FT /transl_table=11 FT /gene="H" FT /product="gpH" FT /note="minor spike protein" FT /db_xref="GOA:Q2LM32" FT /db_xref="InterPro:IPR006777" FT /db_xref="UniProtKB/TrEMBL:Q2LM32" FT /protein_id="AAZ49049.1" FT /translation="MLGAVVGGIASALAGGAASKLFGGKPAAQAATESSGLSNGQGVIG FT MDQDAGIQSAIQGSNVPNGQIPAPTQTGGVMSDAKNMIKNAGKDLLDGVMTAGSDRIKQ FT ALVDKLSGNDAKKQGQATRDYLAAAFPELNAWERAGAGASGAGLESSGQNQQKELMRMQ FT LDTQKDIAKMQMHNNLQIAGIQSATSRENTKDSVYAQNEMLKFNQQESQARVESILANT FT DLTAKQATHEIMRMALTRAQETGQHLTNSQTMALEKKVYAEIGKIHQDTQNARYGSSQV FT TAAAKDVTNMISDAAGGFADWASQQWNSFFKDGKSNGIPLNTRK" XX SQ Sequence 6097 BP; 1418 A; 1310 C; 1439 G; 1930 T; 0 other; ttgttgacat tccccaaacc tttatgagac tcttgcttca acgaaacgaa gtaggagtct 60 tttttatgaa gccagctcac cgcctctatc atcctgttct tggttcttgg ttgtttaagt 120 gccccgttta tgttcgttat gagtcccttt atcatggtcg cctcattaag gttcgtgctg 180 ttcgtgacct ttccccgcgt cagcagttga ttgctaatcc taaaaattgc tttgatgttg 240 tcatcgctga gattgacgtt actcaccttt ctgttacttg ttatgatttt gaagccgaag 300 agtatgctga gtgtgattct ggtactatgg agcttcttct ttctcaggtg aattctggcg 360 aggttattcg ctcttctgaa gacttgtttg ttgatgttga tgatatggat tggctttatg 420 aaattgcggg gtaaattatg gaaactgtta tcggaaaatt tattgctctg gctgttgttg 480 ctcttatgct gtatggaatt tcccgtttaa ttcggaggtt cccgtgaagt attttagtct 540 agtggacgaa cattatgctt attgctctga gacaaggatt ttgcatatca ctcgtagtcg 600 tgtttctgac cctcgttatg agcgtcgctt tcttactgat gaggagcatt ttgcgctttt 660 ggattggtta aaaagtcgcc caacttatat taattcttga cagaccttta aaataccctc 720 tatattgccc tcatagtttc actacgaggg cttttcgcat ggctactgaa atcttctctg 780 atgttgttaa ggccgtctgg tctcacgcta cggctaagca cgctcacctt cgtttggctg 840 ttcaggttga taatcgcagt cgccttcttt ctgacctcgt ccatcagttg gagaagcgtc 900 tttctgagga gactcatctt gatgatgaga ctcttgccgt ttatgaatat cagaccgctc 960 ttttggaaga ccatatggct ctggttcgga agtgtgctgc ccaacttgat aatagtaaca 1020 ctatagacca ccgcacccct ttggatgccg aatgtgtttt cctgtttgaa atgatttgcc 1080 caggtgttcg ctacggtaaa acgttgaatt ctctttggac taagtatgtt gctcaatggc 1140 ctgagaagtt aattcgtcaa gagttagaca tggttaagcc tttatccttt aaggatgagg 1200 ttgctaagta catggagaag atgcaggaaa aaacacgcaa aaatcgcatg actcaaaaag 1260 taattaatga gatgcgtatt gctcaccaaa agggctggtt tttcgtattt gatacgttga 1320 cacttgctga tgaccgtttg caggctttta atgaaaaccc caatgctctt cgtgattatt 1380 tcaggactgt tggtcgagct gttctgcgcg ctgaaggtcg ttcggttaag gattcctaca 1440 acgactgcta tcgctatctt tgtgtgccgg agtttggagg tcagcacggt cgtcttcatt 1500 ggcacgttgt gcatatggtg cggactcttc ctttgggaag tcacgaccct aatttcggtc 1560 gcaaggtacg taattatcgc cagattaact cgtttcgtgg catgtggcct tatggcttta 1620 cgcaaccgat agctgtacgc tatcaacatg atgcttattc tcgcaaaggt tggttgtggc 1680 ctgttgacaa atcaggtaaa gcaatgcaga gtaagcccta ccaggcggtc gcatggtatg 1740 tgaccaagta tgtagccaag caatctgacc agcgtcagaa agctattact gagagacaaa 1800 aaaaatgcaa gaatccactt atggcaatct gtctgaaaaa ggaattcaga gttcgcagca 1860 gccggaagct cggaatggag ttgccgtcga tggcgcatct cagcaacaaa gtgcttctgg 1920 aactgagccg aatcagcttc gattccagcc ctctgtatca gatagtgaaa gagaacgcca 1980 aaaagcaatt gaccttgaac atcggcgcgc tgcctttgca cgtcattttg gatgtgcgcc 2040 cggaagtgag aagtatgttg aaaaatatcc gtcgtttgat gaaaaagaca cccgagttca 2100 attggcagag ttctatcgct tcaatgacgg tcaccttaaa aaatggggat atttctgatg 2160 aagcacgtca atacattatt gatgcaggaa ttacgccttt tgatttgcga gctaaagcga 2220 ctcaaacttt cggcggcaag tgacccggat ttttctcagg agaagattca tgctgagctc 2280 gactcgttac tacgcaagtt atcgcgctac tttgactaag cagcttatgt ttttgactaa 2340 agctgacttt accaatgatg atgaaaaatg gcttaatgcc tttggtaatt tgctccgcca 2400 gtggtttcag attgaggatt ggaagggtaa tcataaaaaa ttgcttgacg atttaaaaaa 2460 acgtgattac atttgagctc tctacatttg agctctctac atttgagctc tctcaaggtt 2520 tcttacccat taaatgttag gagaatgtta tgtctaattt tgttgctacc gatgttaact 2580 ttgctacttc tgttgctgct ctgaagatgc ttcaggcttc tgctgttctt gatattaccg 2640 aggaggattt tgatttcctg actggtgata aaatttggat tgctactgac cgcaaccgtg 2700 cgcgtcgctg tgttgaggct tgtgtttatg gaacgctgga ctttgtggga taccctcgct 2760 ttcctgctcc tgttgagttt attgctgccg tcattgctta ttatgttcat cccgtcaaca 2820 ttcagacggc ctgcctcatc atggaaggcg ctgagtttac ggaaaacatt gttaatggcg 2880 tcgagcgtcc ggttaaagcc gctgagctct tcgcgtacac cttgcgtgtt aaggccggat 2940 tcaaagaaac ggttctgagc gctgaagaga atgctcgcca aaaacttcgt gcaagtggag 3000 taatgtaata tgaagaaagc tcgtcgttcc ccttctcgta agaaaggtgc ccgtctctgg 3060 tatgtaggcg gttctcaatt ttaattaacg gggcttcggc ccctataagg attcttaaat 3120 gtcaaacgtg caaacttccg ctgaacgtat tcctcacgac ctttctcatc tggtttttga 3180 tgcaggcaaa attggtcgtt taaaggttgt ttcttggact cctgttgttg caggtgattc 3240 ttttgagctt gatatgattg gcgctattcg cctctccccg cttcgtcgtg gtcttgctgt 3300 tgactctcgc gttgacttgt tcacgtttta tgttcctcat cgtcatgtat atggtgagca 3360 gtggattgag tttatgaagc aaggtgttga tgctgctcct ctggctcctg ttgagtgctc 3420 tcgtggttgg gatagtgcgc agtatctcgc tactattccg tctagtaact taaaggttcc 3480 taagttcctt catcaaggtt acctgaacat ttacaataac tacttcaaag ctccgtggat 3540 ggatgacttg acttatgcca acccatctaa tatggaaggt gaagatgttc gttttggtgt 3600 tcgtgcatgt aatttaaaaa ctatctggac tgctccgctt cctccagata ctgaaacctc 3660 tcattctatg gagaccgaga ccaactccat tgacattatg ggtttacagg ccgcttatgc 3720 tcaattacat actgagcagg agcgtgatta cttcatgact cgttatcgtg atattgttaa 3780 cgaatttggt ggtagtactt cttatgatgc ggataatcgt cctttgcttg ttatgcattc 3840 tgagttttgg gcctcaggct atgacgtcga cggcaccgac caaagctctc tcggtcagtt 3900 ctctggtcgc gtccaacaga cgtttaagca ttcagtaccg cgattcttct gtcctgagca 3960 tggcactatg ttcacactcg cattggtccg cttcccgccg actcatgaga tggagatgca 4020 ttacttagtt ggtaaagaaa atttgactta cactgatttg gcttgtgacc ctgctttgat 4080 ggctaacttg cctccgcgtg aggttaatat gtctcagttc ttccattctg gaagtgctag 4140 cgctaagttt aaaattgctg aaggtcagtg gtatcgtatg cagcctgacc gcgttgcatt 4200 gccgtataac tatcttgatg gtttcccgtt ctatagcgcg attccgtctg atgatattaa 4260 gcagcgtgtt ctggttaata ctgataacta cgatgaggtt ttccagtcta tgcaacttgc 4320 tcactggaat atgcagacta agtttaactg caccatttat cgtaatatgc cgactactcg 4380 tgattctatt atgacttctt gattatgtgg ggcttcggcc ccctttaagg atttgattat 4440 gtttcaagtt tatgtagcta aacatgttgc tccgttcact tccatgaatc gtgcattttc 4500 tatctctcct gctgctgacc cgcaggttgt taactctggt gagattgttg ctggtcgttc 4560 taccttccgc attgcttctt ctattggttc agcttccaat ggtaatggtt ttgcattcgt 4620 tcagatgatg gaccctaact ctcctgattc tcagcaggtc ttctctgttg ctgcgtcact 4680 gtcttttagc gttgactcga attatgtccc ttgcgttgtt cgctttgaga gtagtgctgc 4740 tcagcctggt cgattcgcta tttctgaggc tgattttatt ccggttgagg cctccgctct 4800 ctctgcgcgc gcgcttagtg ttcgtgattg tgttactgtt gatgttaagc ctcgcactga 4860 aggtaataac gtctttgttg gtctattcct gtcttctgct gccgctaatg ctggtaatgt 4920 tactggtgtt atttcgatgg ctcaggttga ccatgaagtt acagctttgc agcctcttaa 4980 ataaaaggcc gccgcactcc cggttatatg cctgcccagt gtagggcgga ccgagccgta 5040 cggagatacc cgataaacta ggaacgtgga aggcgcaagc cgccttccct cctgctaagc 5100 cccaaaagga gttacagcga tgttaggtgc cgttgtaggt ggtattgctt cagccttagc 5160 tggtggagcc gcttctaagt tgtttggtgg caaacctgct gctcaagccg ctaccgagtc 5220 ctctggcctt tctaatggtc agggtgttat tggtatggac caagatgctg gtattcagtc 5280 agctattcag ggctctaatg ttcccaatgg tcagattcct gcccccactc agactggtgg 5340 cgttatgtct gatgctaaaa atatgattaa gaatgctggt aaagatttgc ttgatggcgt 5400 tatgaccgct ggaagtgatc gcattaagca ggcgttggtt gataagttga gtggtaacga 5460 tgcaaagaaa caaggacaag caacccgtga ttacttggct gcggcctttc ctgagctcaa 5520 tgcatgggaa cgtgctggag ctggtgcttc cggtgccgga ttggaatctt ccggtcagaa 5580 tcaacagaaa gagttgatgc gtatgcagct ggatactcag aaggatattg ctaagatgca 5640 aatgcataac aatttgcaaa ttgctggtat tcagtccgct acttctcgcg agaatacaaa 5700 ggattctgtt tatgctcaga atgagatgct taaatttaat caacaagagt cacaggcacg 5760 cgttgagtct atcctcgcca acactgacct tacggctaaa caggccaccc atgaaatcat 5820 gagaatggct cttactcgtg ctcaggagac tggtcagcat ttaactaact ctcagactat 5880 ggcattggag aaaaaggttt atgcagaaat cggaaaaatt catcaagata ctcaaaacgc 5940 tcgctatggt agctctcaag ttactgctgc ggcgaaagat gtcaccaata tgatttcaga 6000 tgccgctggt ggttttgccg attgggcctc tcaacaatgg aattcgttct ttaaggatgg 6060 caagtctaat ggtattcctc tcaataccag aaaataa 6097 //