ID DQ079875; SV 1; circular; genomic DNA; STD; PHG; 6065 BP. XX AC DQ079875; XX DT 25-JAN-2006 (Rel. 86, Created) DT 28-FEB-2006 (Rel. 87, Last updated, Version 2) XX DE Coliphage NC28, complete genome. XX KW . XX OS Escherichia phage NC28 OC Viruses; ssDNA viruses; Microviridae; Bullavirinae; Alpha3microvirus. XX RN [1] RP 1-6065 RX DOI; 10.1128/JB.188.3.1134-1142.2006. RX PUBMED; 16428417. RA Rokyta D.R., Burch C.L., Caudle S.B., Wichman H.A.; RT "Horizontal gene transfer and the evolution of microvirid coliphage RT genomes"; RL J. Bacteriol. 188(3):1134-1142(2006). XX RN [2] RP 1-6065 RA Rokyta D.R., Burch C.L., Caudle S.B., Wichman H.A.; RT ; RL Submitted (31-MAY-2005) to the INSDC. RL Biological Sciences, University of Idaho, PO Box 443051, Moscow, ID RL 83844-3051, USA XX DR MD5; 5fa7fd97f269ddf10459a63b60e1d4b3. DR EuropePMC; PMC2746890; 19693424. XX FH Key Location/Qualifiers FH FT source 1..6065 FT /organism="Escherichia phage NC28" FT /mol_type="genomic DNA" FT /db_xref="taxon:338106" FT gene 759..2243 FT /gene="A" FT CDS 759..2243 FT /codon_start=1 FT /transl_table=11 FT /gene="A" FT /product="gpA" FT /note="Rf replication; viral strand synthesis" FT /db_xref="GOA:Q2LM72" FT /db_xref="InterPro:IPR008766" FT /db_xref="UniProtKB/TrEMBL:Q2LM72" FT /protein_id="AAZ49009.1" FT /translation="MATELFSDVVKATWSHVTAKHPHLRMAVQVDNRSRLLSDLVYQLE FT KRLSEETHLDDETYALYESQTGLLEDHMALVRKCAAQLDNSNTIDHRTPLDPECVFLFE FT MICPGVRYGKALNSLWSKYVAQWPEKLIRQELDMVKPLSFKDEVAKYMEKMQEKTRKNR FT MTQKVINEMRIAHQKGWFFVFDTLTLADDRLQAFNENPNALRDYFRTVGRAVLRAEGRS FT VKDSYNDCYRYLCVPEFGGQHGRLHWHVVHMVRTLPLGSHDPNFGRKVRNYRQINSFRG FT MWPYGFTQPIAVRYQHDAYSRKGWLWPVDKTGKAMQSKPYQAVAWYVTKYVAKQSDQRQ FT KAITERQKKCKNPLMAICLKKEFRVRSSRKLGMELPSMVHLSNKVLLELSRISFDSSPL FT YQIVKENAKKQLSLNIGVVPLHVIMDVRPQVRSMLKNIRRLMKKTPEFNWQNSIASMTV FT TLKNGDISNEARQYIVDAGITPFDLRAKATQTFGGK" FT gene 1805..2158 FT /gene="B" FT CDS 1805..2158 FT /codon_start=1 FT /transl_table=11 FT /gene="B" FT /product="gpB" FT /note="capsid morphogenesis" FT /db_xref="GOA:Q2LM71" FT /db_xref="InterPro:IPR003513" FT /db_xref="UniProtKB/TrEMBL:Q2LM71" FT /protein_id="AAZ49010.1" FT /translation="MQKSFDGNLLEERIQGSQQPEARNGVTFNGSPEQQGPSGTEQNQL FT RFQPALSDSERERQKAIELEHRRSAFARHYGCAPASEKYVEKYPSFDEKDTRIQLAEFY FT RFNDGHLKKWGYF" FT gene 2158..2319 FT /gene="K" FT CDS 2158..2319 FT /codon_start=1 FT /transl_table=11 FT /gene="K" FT /product="gpK" FT /db_xref="UniProtKB/TrEMBL:Q2LM70" FT /protein_id="AAZ49011.1" FT /translation="MKHVNTLLMQELRLLICELKRLKLSAVSDPDFSQEKIHAELDSLL FT RKLSRHFD" FT gene 2270..2476 FT /gene="C" FT CDS 2270..2476 FT /codon_start=1 FT /transl_table=11 FT /gene="C" FT /product="gpC" FT /note="DNA maturation" FT /db_xref="GOA:Q2LM69" FT /db_xref="InterPro:IPR016407" FT /db_xref="UniProtKB/TrEMBL:Q2LM69" FT /protein_id="AAZ49012.1" FT /translation="MLSSTRYYASYRATLTKQLMFLTKADFTNDDEKWLNAFGNLLRQW FT FQIEDWKGNHKKLFDDLKKREYI" FT gene 2519..2977 FT /gene="D" FT CDS 2519..2977 FT /codon_start=1 FT /transl_table=11 FT /gene="D" FT /product="gpD" FT /note="capsid morphogenesis" FT /db_xref="GOA:Q2LM68" FT /db_xref="InterPro:IPR004196" FT /db_xref="UniProtKB/TrEMBL:Q2LM68" FT /protein_id="AAZ49013.1" FT /translation="MSNLVATDVNFATSVAALKMLQSSAVLDITEEDFDFLTGDKIWIA FT TDRNRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFT FT ENIVNGVERPVKAAELFAYTLRVKAGLKETVLNAEENARQKLRASGVM" FT gene 2697..2927 FT /gene="E" FT CDS 2697..2927 FT /codon_start=1 FT /transl_table=11 FT /gene="E" FT /product="gpE" FT /note="cell lysis protein" FT /db_xref="GOA:Q2LM67" FT /db_xref="InterPro:IPR007605" FT /db_xref="UniProtKB/TrEMBL:Q2LM67" FT /protein_id="AAZ49014.1" FT /translation="MERWTLLDTLAFLLLLSLLLPSLLIMFIPSTFRRPASSWKALSLR FT KTLLMVSSVRLKPLSSSRTPCVLKPDSKRRF" FT gene 2979..3053 FT /gene="J" FT CDS 2979..3053 FT /codon_start=1 FT /transl_table=11 FT /gene="J" FT /product="gpJ" FT /note="core protein; DNA condensation" FT /db_xref="GOA:Q2LM66" FT /db_xref="InterPro:IPR006815" FT /db_xref="UniProtKB/TrEMBL:Q2LM66" FT /protein_id="AAZ49015.1" FT /translation="MKKARRSPSRKKGARLWYVGGSQF" FT gene 3086..4369 FT /gene="F" FT CDS 3086..4369 FT /codon_start=1 FT /transl_table=11 FT /gene="F" FT /product="gpF" FT /note="major coat protein" FT /db_xref="GOA:Q2LM65" FT /db_xref="InterPro:IPR003514" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:Q2LM65" FT /protein_id="AAZ49016.1" FT /translation="MSNVQTSAERIPHDLSHLVFDAGKIGRLKVVSWTPVVAGDSFELD FT MIGAIRLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIDFMKAGVDAAPLAPVTCSRGW FT DSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPSNMEGEDVRFGVRA FT CNLKTIWTAPLPPDTETSHSMETETNSIDIMGLQAAYAQLHTEQERDYFMTRYRDIVNE FT FGGSTSYDADNRPLLVMHSEFWASGYDVDGTDQSSLGQFSGRVQQTFKHSVPRFFCPEH FT GTMFTLALVRFPPTHEMEMHYLVGKEDLTYTDLACDPALMANLPPREVNMSQFFHSGSA FT SAKFKIAEGQWYRMQPDRVALPYNYLDGFPFYSAIPSDDINHRVLVNTDNYDEVFQSMQ FT LAHWNMQTKFNCTIYRNMPTTRDSIMTS" FT gene 4407..4952 FT /gene="G" FT CDS 4407..4952 FT /codon_start=1 FT /transl_table=11 FT /gene="G" FT /product="gpG" FT /note="major spike protein" FT /db_xref="GOA:Q2LM64" FT /db_xref="InterPro:IPR003515" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:Q2LM64" FT /protein_id="AAZ49017.1" FT /translation="MFQVYVSKHVAPFTSKNRAFSIAPAANPQVVNSGEIVAGRSTFRI FT ASSIASAVNGSGFAFVQMMDPNSPDSQQVFSVAASLSFSVDSNYIPCVVRFEDNAAQPT FT DFDIATADFIPVEVSAISPRALSVRDCVTVDVKPRTQGNNVFVGVVFFSASANAGNVTG FT VVSMAQVDHEVTALQPLK" FT gene 5088..6065 FT /gene="H" FT CDS 5088..6065 FT /codon_start=1 FT /transl_table=11 FT /gene="H" FT /product="gpH" FT /note="minor spike protein" FT /db_xref="GOA:Q2LM63" FT /db_xref="InterPro:IPR006777" FT /db_xref="UniProtKB/TrEMBL:Q2LM63" FT /protein_id="AAZ49018.1" FT /translation="MLGAVVGGIVSALAGGAASKLFGGKPAAQAATESSGLSNGQGVIG FT MDQDAGIQSAIQGSNVPNGQIPAPTQTGGVMSDAKNMIKNAGKDLLDGVMTAGSDRIKQ FT ALVDKLSGNNAKRQGQATRDYLASAFPELNPWERSGAGASGAGLESSGQDQQKELMRMQ FT LDNQKDIAKMQMDNNLQIAGIQSATSRQNTKDTVYAQNEMLQYNQRESQARVESILANT FT NLTDKQATHEIMRMALTRAQETGQHLTNSQIMALEKKVYAEIGKINQDTQNARYGSSQV FT TAAAKDVTNMITDATSGAADWVSQQWNSLFKDGKSNGIPLNTRK" XX SQ Sequence 6065 BP; 1428 A; 1291 C; 1428 G; 1918 T; 0 other; ttgttgactt ctcccaatcc cttatgagac tcttacttca acgaatgaag taggagtctt 60 tatcatgaag cccgctcacc gcttgactca tccgattctc ggttcttggt tgtttaagtg 120 ccctgtttat atcagttatg agcaccttca tcatggtcgt ctcattaagg ttcgcgctgt 180 tcgtgattta tcccctcgcc agcagcttat cgctaaccct aaaaattgtt ttgacgttgt 240 tattgctgtg attgacgtta cttattgctc tgtcacttat tttgattatg aggctgagga 300 atatgccgag tgtgattcag aaactatgga taatatcctt gcttatgtta actctcctca 360 ctcccttcgc tctgaggagg attcatccgt tgatgttgac gatatggcgt ggctttatga 420 aattgcggag taaatcatgg aaactgttgt cgggaaattt attgctttgg ctgttgttgc 480 tcttatgctg tatggaattg cccgtttaat tcggaggttc ccgtgaaata ctttagtctt 540 gtggatgaac attatgctta ttgccctgac acgcggattc tgcatatcac tcgcagtcgt 600 gtttctgacc ctcgttatga gcgtcgtttt cttactgatg aggagcattt tgagcttctg 660 gattggttga aaagccgtct gacttacgtt aattcttgac aatcttctga aataccctct 720 atattgccct cataggttca ctacgagggc tttttcgcat ggctaccgaa ttgttttctg 780 acgttgtaaa ggctacgtgg tcgcatgtca ctgctaagca tcctcatctt cgtatggctg 840 ttcaggttga taaccgtagc cgtcttcttt ctgatttggt ttaccagttg gaaaaacgcc 900 tttccgaaga gactcatttg gatgatgaga cttatgccct ttatgaatct cagactggcc 960 ttttggaaga ccatatggca ctggttcgaa agtgtgcagc ccaacttgat aatagtaaca 1020 ctatagacca ccgtaccccg ttggaccctg aatgtgtttt cctttttgaa atgatttgtc 1080 caggtgttcg ctatggtaag gcgcttaatt cgctttggag taagtatgtc gctcaatggc 1140 ctgagaagtt aattcgtcag gagctcgaca tggttaagcc tttatctttc aaggatgagg 1200 ttgccaagta catggagaaa atgcaggaaa aaacacgtaa aaatcgcatg actcagaaag 1260 tgattaatga gatgcgtatt gctcaccaaa aaggctggtt cttcgtattt gatacgttga 1320 cacttgctga tgaccgtttg caggcgttta atgaaaaccc caatgctctt cgtgattact 1380 tcaggactgt tggtcgagct gttttgcgcg ctgaaggtcg ttcggttaag gattcctaca 1440 acgactgcta tcgctatctt tgtgtgccgg agtttggagg ccagcacggc cgtcttcatt 1500 ggcatgtcgt gcatatggtg cggactcttc ctttgggaag tcacgaccct aatttcggtc 1560 gcaaggtacg taattatcgc caaattaact cgttccgtgg tatgtggcct tatggcttca 1620 cgcaaccgat agctgtacgc tatcaacatg atgcttattc tcgtaaaggt tggttgtggc 1680 ctgttgacaa aacaggaaaa gcaatgcaga gtaagccgta tcaggcggtc gcatggtatg 1740 tgaccaagta tgtagctaag caatctgatc agcgtcagaa agctattacc gagagacaaa 1800 aaaaatgcaa aaatcctttg atggcaattt gcttgaagaa agaattcagg gttcgcagca 1860 gccggaagct cggaatggag ttaccttcaa tggttcacct gagcaacaag gtccttctgg 1920 aactgagcag aatcagcttc gattccagcc cgctctatca gatagtgaaa gagaacgcca 1980 aaaagcaatt gagcttgaac atcggcgtag tgcctttgca cgtcattatg gatgtgcgcc 2040 cgcaagtgag aagtatgttg aaaaatatcc gtcgtttgat gaaaaagaca ccagaattca 2100 attggcagaa ttctatcgct tcaatgacgg tcaccttaaa aaatggggat atttctaatg 2160 aagcacgtca atacattgtt gatgcaggaa ttacgccttt tgatttgcga gctaaagcga 2220 ctcaaacttt cggcggtaag tgacccagat ttttctcagg agaaaattca tgctgagctc 2280 gactcgttac tacgcaagtt atcgcgccac tttgactaag caattgatgt ttcttactaa 2340 agccgacttt acgaatgatg atgagaagtg gcttaatgcg tttggtaatt tgcttcgcca 2400 gtggtttcag attgaggact ggaaaggaaa tcataagaaa ttgtttgacg atttaaaaaa 2460 acgcgaatac atttgagttg tttcaaagtt atctacccat aagtgttagg agtatgttat 2520 gtctaatctt gttgctactg atgtaaattt cgctacttct gttgccgctc tgaagatgct 2580 tcagtcttct gctgttctgg atattactga ggaggatttc gacttcctga ctggtgataa 2640 aatttggatt gctactgacc gcaaccgtgc gcgtcgttgt gtagaggctt gtgtttatgg 2700 aacgctggac tttgttggat accctcgctt tcctgctcct gttgagttta ttgctgccgt 2760 cattgcttat tatgttcatc ccgtcaacat tcagacggcc tgcctcatca tggaaggcgc 2820 tgagtttacg gaaaacattg ttaatggtgt cgagcgtccg gttaaagccg ctgagctctt 2880 cgcgtacacc ctgcgtgtta aagccggact caaagagacg gttttgaatg ctgaagagaa 2940 tgctcgccaa aaacttcgtg cttctggagt aatgtaatat gaaaaaggct cgtcgctctc 3000 cttctcgtaa aaaaggtgct cgcctctggt atgtaggcgg ttctcagttt taattatggg 3060 ccttcgggcc ctttaaggaa atccaatgtc aaacgtgcaa acttccgcag aacgtattcc 3120 gcatgacctt tcccatctgg tttttgatgc tggcaagatt ggtcgtttaa aggttgtttc 3180 ttggactcct gttgttgcag gtgattcttt tgagcttgat atgattggcg caattcgcct 3240 ttctccgctt cgtcgtggtt tggctgttga tagccgcgtt gacttgttta ctttctatgt 3300 tcctcatcgt catgtttatg gtgagcaatg gattgatttt atgaaagcag gtgttgatgc 3360 tgctccgctt gcacctgtta cttgttcgcg tggttgggat agcgcccagt atttggctac 3420 aattccgtcc tctaacctga aggttcctaa gttccttcat caaggttatt tgaatattta 3480 taataactat tttaaagctc cgtggatgga tgatttaact tatgccaatc cgtctaatat 3540 ggaaggtgaa gacgttcgtt ttggtgttcg tgcgtgtaac ttgaaaacta tttggactgc 3600 cccacttccg ccggacactg agacttctca ttctatggag actgagacta actctattga 3660 tatcatgggc cttcaggccg cttatgctca gcttcatact gagcaggaac gtgattattt 3720 catgacgcgt tatcgtgata ttgttaatga atttggtggt agtacttctt atgatgcgga 3780 taatcgccct cttctggtta tgcactctga gttttgggct tcaggctatg acgtcgacgg 3840 caccgaccaa agttctctcg gtcagttctc tggacgtgta cagcagacct ttaagcattc 3900 agtaccgcga ttcttctgcc ctgagcatgg cactatgttc acactcgcat tggtccgctt 3960 cccgccgacc catgagatgg agatgcatta cttagttggc aaggaagatt taacctatac 4020 tgatttggct tgtgacccag ctctgatggc caacctccct cctcgtgagg ttaatatgtc 4080 tcagttcttc cattctggaa gtgctagtgc taagtttaag attgctgaag gtcaatggta 4140 tcgtatgcag cctgaccgtg ttgctttgcc gtataactat cttgatggtt ttccgttcta 4200 tagtgcgatt ccatctgatg atattaatca tcgtgttctg gttaatactg ataactacga 4260 tgaggttttc cagtctatgc agcttgcgca ctggaatatg cagaccaagt ttaactgcac 4320 catttatcgt aatatgccga ccactcgcga ctctattatg acctcttgat tatgtgggcc 4380 ttcgggcccc tttaaggatg ttgattatgt ttcaagttta tgtatctaag catgttgccc 4440 cgttcacttc taagaaccgt gctttttcta ttgctcccgc tgctaatccg caggttgtta 4500 actctggtga gattgttgca ggtcgttcta cgtttcgtat tgcttcttct attgcttccg 4560 ctgttaatgg tagtggtttc gcttttgttc agatgatgga ccctaactct cctgattctc 4620 agcaggtttt ctctgttgct gcttctctgt cctttagtgt tgattcgaat tacattcctt 4680 gtgttgttcg ttttgaggat aacgctgctc agcctactga ttttgatatt gcgaccgctg 4740 attttattcc ggttgaggtt tctgctattt ctcctcgtgc gcttagtgtt cgcgattgtg 4800 ttaccgttga tgttaagcct cgcactcaag gcaataatgt ttttgttggt gttgttttct 4860 tttctgcttc tgctaatgcc ggtaatgtca ctggtgtcgt ttcgatggct caggttgacc 4920 atgaagttac agctttgcag ccgcttaaat aaaaggccac cgcactcctg gttagatgcc 4980 tgcccagtgt agggtggacc gagccgtacg gagatacccg agaaactagg aacgcggaag 5040 gcgttagccg ccttccctcc tgctaagccc aaaggagact ttcagctatg ttaggtgccg 5100 ttgtaggtgg tattgtttca gccttagctg gtggagcagc ttctaagcta tttggtggca 5160 agcctgccgc tcaagccgcc actgagtcct ctggcctttc taatggtcaa ggtgttattg 5220 gtatggacca agatgctggt attcagtcag ctattcaggg ttcgaatgtt ccaaatggtc 5280 agattcctgc ccctacccag actggtggcg ttatgtctga cgctaaaaat atgattaaga 5340 atgctggtaa agatttgctt gatggtgtta tgaccgctgg aagtgaccgc attaagcagg 5400 cattggttga taaattgagt ggtaataatg caaaacgaca aggacaagca acccgtgatt 5460 acttggcttc ggccttccct gagctcaacc cgtgggaacg ttctggagct ggtgcttccg 5520 gtgccggatt ggaatcttcc ggtcaggacc aacaaaaaga gttgatgcgt atgcagctgg 5580 ataaccagaa agatattgca aagatgcaga tggataacaa tttgcagatt gctggtattc 5640 agtccgctac atctcgtcag aatactaagg acactgttta tgctcagaat gaaatgcttc 5700 agtacaatca gcgtgagtcg caggcacgcg ttgaatctat cctcgccaac actaacctta 5760 cggataagca ggctacccat gaaatcatga gaatggctct tacccgtgct caggaaactg 5820 gtcagcattt gactaactct cagattatgg cattggagaa aaaggtttat gcagaaatcg 5880 gaaaaattaa tcaagatact caaaacgctc gctatggtag ttctcaggtt actgctgcgg 5940 cgaaagatgt tacgaatatg attactgatg ccacctctgg tgctgctgat tgggtttccc 6000 agcaatggaa ttccctcttt aaggatggta agtctaatgg tattcccctc aataccagaa 6060 aataa 6065 //