ID DQ079872; SV 1; circular; genomic DNA; STD; PHG; 6039 BP. XX AC DQ079872; XX DT 25-JAN-2006 (Rel. 86, Created) DT 28-FEB-2006 (Rel. 87, Last updated, Version 2) XX DE Coliphage NC35, complete genome. XX KW . XX OS Escherichia phage NC35 OC Viruses; ssDNA viruses; Microviridae; Bullavirinae; Alpha3microvirus. XX RN [1] RP 1-6039 RX DOI; 10.1128/JB.188.3.1134-1142.2006. RX PUBMED; 16428417. RA Rokyta D.R., Burch C.L., Caudle S.B., Wichman H.A.; RT "Horizontal gene transfer and the evolution of microvirid coliphage RT genomes"; RL J. Bacteriol. 188(3):1134-1142(2006). XX RN [2] RP 1-6039 RA Rokyta D.R., Burch C.L., Caudle S.B., Wichman H.A.; RT ; RL Submitted (31-MAY-2005) to the INSDC. RL Biological Sciences, University of Idaho, PO Box 443051, Moscow, ID RL 83844-3051, USA XX DR MD5; fd727539578595a234edc9ee89e95bff. XX FH Key Location/Qualifiers FH FT source 1..6039 FT /organism="Escherichia phage NC35" FT /mol_type="genomic DNA" FT /db_xref="taxon:338103" FT gene 730..2214 FT /gene="A" FT CDS 730..2214 FT /codon_start=1 FT /transl_table=11 FT /gene="A" FT /product="gpA" FT /note="Rf replication; viral strand synthesis" FT /db_xref="GOA:Q2LMA2" FT /db_xref="InterPro:IPR008766" FT /db_xref="UniProtKB/TrEMBL:Q2LMA2" FT /protein_id="AAZ48979.1" FT /translation="MATEVFSDVVKTVWSHATAKHAHLRMAVQVDNRSRLLSDLVYQLE FT KRLSEETHLDDETLAVYESQTALLEDHMALVRKCAAQLDNSNTIDHRTPLDAECVFLFE FT MICPGVRYGKTLNSLWSKYVAQWPEKLIRQELDMVKPLSFKDEVAKYMEKMQEKTRKNR FT MTQKVINDMRIAHQKGWFFVFDTLTLADDRLQAFNENPNALRDYFRTVGRAVLRAEGRS FT VKDSYNDCYRYLCVPEFGGQHGRLHWHVVHMVRTLPLGSHDPNFGRKVRNYRQINSFRG FT MWPYGFTQPIAVRYQHDAYSRKGWLWPVDKSGKAMQSKPYQAVAWYVTKYVAKQSDQRQ FT KAITERQKKCKNPLMAICLKKEFRVRSSRKLGMELPSMAHLSNKVLLELSRISFDSSPL FT YQIVKENAKKQLTLNIGALPLHVILDVRPEVRSMLKNIRRLMKKTPEFNWQSSIASMTV FT TLKNGDISDEARQYIIDAGITPFDLRAKATQTFGGK" FT gene 1776..2129 FT /gene="B" FT CDS 1776..2129 FT /codon_start=1 FT /transl_table=11 FT /gene="B" FT /product="gpB" FT /note="capsid morphogenesis" FT /db_xref="GOA:Q2LMA1" FT /db_xref="InterPro:IPR003513" FT /db_xref="UniProtKB/TrEMBL:Q2LMA1" FT /protein_id="AAZ48980.1" FT /translation="MQESTYGNLSEKGIQSSQQPEARNGVTFDGASQQQSASGTEPNQL FT RFQSSVSDSERERQKAIDLEHRRTAFARHFGCAPGSEKYVEKYPSFDEKDTRVQLAEFY FT RFNDGHLKKWGYF" FT gene 2129..2290 FT /gene="K" FT CDS 2129..2290 FT /codon_start=1 FT /transl_table=11 FT /gene="K" FT /product="gpK" FT /db_xref="UniProtKB/TrEMBL:Q2LMA0" FT /protein_id="AAZ48981.1" FT /translation="MKHVNTLLMQELRLLICELKRLKLSAVSDPDFSQEEIHAELDSLL FT RKLSRYFD" FT gene 2241..2447 FT /gene="C" FT CDS 2241..2447 FT /codon_start=1 FT /transl_table=11 FT /gene="C" FT /product="gpC" FT /note="DNA maturation" FT /db_xref="GOA:Q2LM99" FT /db_xref="InterPro:IPR016407" FT /db_xref="UniProtKB/TrEMBL:Q2LM99" FT /protein_id="AAZ48982.1" FT /translation="MLSSTRYYASYRATLTKQLMFLTKADFTDDDEKWLNAFGNLLRQW FT FQIEDWKGNHKKLLDDLKKRDYI" FT gene 2491..2949 FT /gene="D" FT CDS 2491..2949 FT /codon_start=1 FT /transl_table=11 FT /gene="D" FT /product="gpD" FT /note="capsid morphogenesis" FT /db_xref="GOA:Q2LM98" FT /db_xref="InterPro:IPR004196" FT /db_xref="UniProtKB/TrEMBL:Q2LM98" FT /protein_id="AAZ48983.1" FT /translation="MSNLVATDVNFATSVAALKMLQASAVLDITEEDFDFLTGDKIWIA FT TDRNRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFT FT ENIVNGVERPVKAAELFAYTLRVKAGFKETVLSAEENARQKLRASGVM" FT gene 2669..2899 FT /gene="E" FT CDS 2669..2899 FT /codon_start=1 FT /transl_table=11 FT /gene="E" FT /product="gpE" FT /note="cell lysis protein" FT /db_xref="GOA:Q2LM97" FT /db_xref="InterPro:IPR007605" FT /db_xref="UniProtKB/TrEMBL:Q2LM97" FT /protein_id="AAZ48984.1" FT /translation="MERWTLWDTLAFLLLLSLLLPSLLIMFIPSTFRRPASSWKALSLR FT KTLLMASSVRLKPLSSSRTPCVLRPDSKKRF" FT gene 2951..3025 FT /gene="J" FT CDS 2951..3025 FT /codon_start=1 FT /transl_table=11 FT /gene="J" FT /product="gpJ" FT /note="core protein; DNA condensation" FT /db_xref="GOA:Q2LM96" FT /db_xref="InterPro:IPR006815" FT /db_xref="UniProtKB/TrEMBL:Q2LM96" FT /protein_id="AAZ48985.1" FT /translation="MKKARRSPSRKKGARLWYVGGSQF" FT gene 3060..4343 FT /gene="F" FT CDS 3060..4343 FT /codon_start=1 FT /transl_table=11 FT /gene="F" FT /product="gpF" FT /note="major coat protein" FT /db_xref="GOA:Q2LM95" FT /db_xref="InterPro:IPR003514" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:Q2LM95" FT /protein_id="AAZ48986.1" FT /translation="MSNVQTSAERIPHDLSHLVFDAGKIGRLKVVSWTPVVAGDSFELD FT MIGAIRLSPLRRGLAVDSRVDLFTFYVPHRHVYGEQWIEFMKQGVDAAPLAPVQCSRGW FT DSAQYLATIPSSNLKVPKFLHQGYLNIYNNYFKAPWMDDLTYANPSNMKGEDVRFGVRA FT CNLKTIWTAPLPPDTETSHSMETESNSIDIMGLQAAYAQLHTEQERDYFMTRYRDIVNE FT FGGSTSYDADNRPLLVMHSEFWASGYDVDGTDQSSLGQFSGRVQQTFKHSVPRFFCPEH FT GTMFTLVLVRFPPTHEMEMHYLVGKEDLTYTDLACDPALMANLPPREVNMSQFFHSGSA FT SAKFKIAEGQWYRMQPDRVALPYNYLDGFPFYSAIPSDDIKQRVLVNTDNYDEVFQSMQ FT LAHWNMQTKFNCTIYRNMPTTRDSIMTS" FT gene 4381..4926 FT /gene="G" FT CDS 4381..4926 FT /codon_start=1 FT /transl_table=11 FT /gene="G" FT /product="gpG" FT /note="major spike protein" FT /db_xref="GOA:Q2LM94" FT /db_xref="InterPro:IPR003515" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:Q2LM94" FT /protein_id="AAZ48987.1" FT /translation="MFQVYVSKHVSPFTSMNRAFGITPSSNPTVVNSGEIQAGRSTFRI FT ASSIGAASNGQGFAFVQMMDPYSPDNQQVFSVAASLSFSVDSNYVPCVIRFETASTQPT FT NIDVSTADFIPLESSALSARALSVRDCVTVDVKPRIEGNNVFVGVVFCSAGASAGNVTG FT AVSMAQVDHEVTALQPLK" FT gene 5062..6039 FT /gene="H" FT CDS 5062..6039 FT /codon_start=1 FT /transl_table=11 FT /gene="H" FT /product="gpH" FT /note="minor spike protein" FT /db_xref="GOA:Q2LM93" FT /db_xref="InterPro:IPR006777" FT /db_xref="UniProtKB/TrEMBL:Q2LM93" FT /protein_id="AAZ48988.1" FT /translation="MLGAVVGGIASALAGGAASKLFGGKSAPQAATESAGLSNGQGVIG FT MDQDAGIQSAIQGSNVPNGQIPAPTQTGGVMSDAKNMIKNAGKDLLDGVMTAGSDRVKQ FT ALVDGLSGNNAKKQGQATRDYLAAAFPELNAWERAGAGASGAGLESSSQDQQKELMRMQ FT LDNQKDIAKMQMQNNLQIAGIQSATSRQNTKDSVYAQNEMLQYNQRESQARVESILANT FT DLTVKQATHEIMRMALTRAQETGQHLTNSQIMALEKKVYAEIGKIHQDTQNSRYGSSQV FT TAAAKDVTNMISDAVGGFADWASQQWNSFFKDGKSNGIPLNTRK" XX SQ Sequence 6039 BP; 1417 A; 1272 C; 1429 G; 1921 T; 0 other; ttgttgacat tccctgaacc cttatgagac tcttgcttca acgaaacgaa gtaggagtct 60 ttttatgaaa ccagctcatc gcctttatca tcctgttctc ggttcttggc tgttcaagtg 120 ccctgtttat atccgttatg agcatcttca tcatggtcgt cttatcaagg ttcgtgctgt 180 tcgtgacctt tctccgcgtc agcagttgat tgctaaccct aaaaattgct ttgacgttgt 240 cattgctgag attgatgtta ctcacctttc tgttactttg tacgattttg aagctgagga 300 gtatgctgag tgtgattccg gtactatgga gcttcttctt tctcaggtaa attctggcga 360 ggttattcgc tcctccgaag acctgtttgt tgatgttgac gatatggatt ggctttatga 420 aattgcggag taaattatgg aaactgttat cggaaaactt attgctctgg ctgttgttgc 480 tcttatgctg tatggaattg cccgtttgat ttggaggttt ccgtgaaata ttttagtttg 540 gtagatgaac attatgctta ctgccctgat acaaggattt tgcacatcac tcgtagtcgt 600 gtttctgacc ctcgctatga gcgtcgcttt cttactgatg aggagcattt tgcacttttg 660 gattggttga aaaatcgtcc aatatacatc aattcttgac agatagtttt actacgagga 720 ctttttcgta tggctactga agttttctct gatgttgtta agaccgtctg gtcccacgct 780 acggctaagc atgcccatct tcgtatggct gttcaggttg ataaccgcag tcgccttctt 840 tctgaccttg tttatcagtt ggaaaaacgc ctttctgaag agactcattt agatgatgag 900 actcttgctg tttatgaatc tcagaccgct cttctggaag accatatggc tctggttcgg 960 aagtgtgctg cccaacttga taatagtaac actatagacc accgtacccc tttggatgcc 1020 gaatgtgttt tcctgtttga aatgatttgc ccaggtgttc gctacggtaa aacgttgaat 1080 tctctttggt ctaagtatgt tgctcaatgg cctgagaagt taattcgtca agagttagac 1140 atggttaagc ctttatcctt taaggatgag gttgctaagt acatggagaa gatgcaggaa 1200 aaaacacgta aaaatcgcat gactcaaaaa gtaattaatg atatgcgtat tgctcaccaa 1260 aagggctggt ttttcgtatt tgatacgttg acacttgctg atgaccgttt gcaggcattt 1320 aatgaaaacc ccaatgctct tcgtgattat ttcaggactg ttggtcgagc tgttctgcgc 1380 gctgaaggtc gttcggttaa ggattcctac aacgactgct atcgctatct ttgtgtgccg 1440 gagtttggag gtcagcacgg tcgtcttcat tggcacgttg tgcatatggt gcggactctt 1500 cctttgggaa gtcacgaccc taatttcggt cgcaaggtac gtaattatcg ccagattaac 1560 tcgttccgtg gcatgtggcc ttatggcttc acgcaaccga tagctgtacg ctatcaacat 1620 gatgcttatt ctcgcaaagg ttggttgtgg cctgttgaca aatcaggtaa agcaatgcag 1680 agtaagccct atcaggcggt cgcatggtat gtgaccaagt atgtagccaa gcaatctgac 1740 cagcgtcaga aagctattac tgagagacaa aaaaaatgca agaatccact tatggcaatc 1800 tgtctgaaaa aggaattcag agttcgcagc agccggaagc tcggaatgga gttaccttcg 1860 atggcgcatc tcagcaacaa agtgcttctg gaactgagcc gaatcagctt cgattccagt 1920 cctctgtatc agatagtgaa agagaacgcc aaaaagcaat tgaccttgaa catcggcgca 1980 ctgcctttgc acgtcatttt ggatgtgcgc ccggaagtga gaagtatgtt gaaaaatatc 2040 cgtcgtttga tgaaaaagac acccgagttc aattggcaga gttctatcgc ttcaatgacg 2100 gtcaccttaa aaaatgggga tatttctgat gaagcacgtc aatacattat tgatgcagga 2160 attacgcctt ttgatttgcg agctaaagcg actcaaactt tcggcggtaa gtgatccgga 2220 tttttctcag gaggagattc atgctgagct cgactcgtta ctacgcaagt tatcgcgcta 2280 ctttgactaa gcagctgatg tttttgacta aagctgactt tactgatgat gatgaaaaat 2340 ggcttaatgc ctttggtaat ttgctccgtc agtggtttca gattgaggat tggaaaggta 2400 atcataaaaa attgcttgac gatttaaaaa aacgtgatta catttgaact gtttcaaggt 2460 ttcttaccca ttaaatgtta ggagaatgtt atgtctaatc ttgttgctac tgatgttaac 2520 tttgctactt ctgttgctgc tctgaagatg cttcaggctt ctgctgttct ggatattacc 2580 gaggaggatt ttgatttcct gactggtgat aaaatttgga ttgctactga ccgcaaccgt 2640 gcgcgtcgct gtgttgaggc ttgtgtctat ggaacgctgg actttgtggg ataccctcgc 2700 tttcctgctc ctgttgagtt tattgctgcc gtcattgctt attatgttca tcccgtcaac 2760 attcagacgg cctgcctcat catggaaggc gctgagttta cggaaaacat tgttaatggc 2820 gtcgagcgtc cggttaaagc cgctgagctc ttcgcgtaca ccttgcgtgt taaggccgga 2880 ttcaaagaaa cggttctgag cgctgaagag aatgctcgcc agaaacttcg tgcaagtgga 2940 gtaatgtaat atgaagaaag ctcgtcgttc tccttctcgt aagaaaggtg cccgtctctg 3000 gtatgtaggc ggttctcaat tttaattgat ggggcttcgg cccctataag gatttttaaa 3060 tgtcaaatgt acaaacttcc gctgagcgta tccctcatga cctgtctcat ctggtttttg 3120 atgcaggcaa aattggtcgt ttaaaagttg tttcttggac tcctgttgtt gcaggtgatt 3180 cttttgagct tgatatgatt ggcgctattc gcctctcccc gcttcgtcgt ggtcttgctg 3240 ttgactctcg cgttgacttg ttcacgtttt atgttcctca tcgtcatgta tatggtgagc 3300 agtggattga gtttatgaag caaggtgttg atgctgctcc tctggctcct gttcagtgct 3360 ctcgtggttg ggatagtgcg cagtatctcg ctactattcc gtctagtaac ttaaaggttc 3420 ctaagttcct tcatcaaggt tacctgaaca tttataataa ctattttaaa gctccgtgga 3480 tggatgactt gacttatgct aacccgtcca atatgaaagg tgaagacgtt cgttttggtg 3540 ttcgtgcatg taacttgaaa actatttgga ccgctccgct tcctccggac actgaaacct 3600 ctcattctat ggagactgag tctaactcca ttgacattat gggtttgcaa gccgcttatg 3660 ctcaattaca tactgagcag gagcgtgatt acttcatgac tcgttatcgt gatattgtta 3720 atgaatttgg tggtagtact tcttatgatg cggataatcg tcctttgctt gttatgcatt 3780 ctgagttctg ggcctcaggc tatgacgtcg acggcaccga ccaaagctct ctcggtcagt 3840 tctccggtcg tgtccagcag acgtttaagc attcagtacc gcgattcttc tgtcctgagc 3900 atggcactat gttcacactc gtattggtcc gcttcccgcc gactcatgaa atggagatgc 3960 attacttagt tggtaaagaa gatttgactt atactgattt ggcttgtgac ccggctttga 4020 tggctaactt gcctccgcgt gaggttaata tgtctcagtt cttccattct ggaagtgcta 4080 gtgctaagtt taaaattgct gaaggccagt ggtatcgcat gcagcctgac cgtgttgcgc 4140 tgccgtataa ctatcttgat ggttttccgt tctatagtgc gattccgtct gatgatatta 4200 agcagcgtgt tctggttaat actgataact acgatgaggt tttccagtct atgcagcttg 4260 ctcactggaa tatgcagacc aagttcaact gcacgattta tcgtaatatg ccgactactc 4320 gtgattctat tatgacctct tgattatgtg gggcttcggc cccctttaag gatattgatt 4380 atgtttcaag tttatgtttc taagcatgtt tctccgttca cctctatgaa tcgtgctttt 4440 ggtattactc cttctagcaa tccgactgtt gttaactctg gtgaaattca ggctggtcgt 4500 tctacttttc gtattgcctc ttccattggt gccgcttcca atggtcaagg ttttgcgttt 4560 gttcaaatga tggaccctta ttctcctgat aatcagcagg ttttttctgt tgctgcttcc 4620 ctgtctttta gtgttgattc gaactatgtt ccttgcgtta ttcgttttga gactgctagc 4680 acgcagccga ctaatatcga tgtttctact gctgacttta ttccgcttga gtcttctgct 4740 ctctctgctc gtgctctcag tgttcgtgat tgtgttaccg ttgatgttaa gcctcgcatt 4800 gaaggtaata acgttttcgt tggtgtggtt ttctgttctg ctggagctag tgctggtaat 4860 gtcactggtg ctgtttcgat ggctcaggtt gaccatgaag ttacagcttt gcagcctctt 4920 aaataaaagg ccgccgcact cccggttata tgcctgccca gtgtagggcg gaccgagccg 4980 tacggagata cccgataaac taggaacgtg gaaggcgcaa gccgccttcc atcctgctaa 5040 gcctaaagga gactttcagc tatgttaggt gccgttgtag gtggtattgc ttcagcctta 5100 gccggtggag ccgcctctaa gttatttggt ggtaagtctg cccctcaagc cgctacagag 5160 tccgctggcc tatctaatgg tcaaggtgtt attggtatgg accaagatgc cggtattcag 5220 tcggctattc agggttcaaa tgtcccaaat ggtcagattc ccgcccccac gcagactggt 5280 ggtgttatgt ctgatgctaa aaacatgatt aagaatgctg gtaaggattt gcttgatggt 5340 gtcatgactg ctggtagtga ccgagtcaaa caagctttgg ttgatggatt gagtggtaat 5400 aatgcaaaga aacaaggaca agcaacccgt gattacttgg ctgcagcctt ccctgaactc 5460 aatgcatggg agcgtgctgg agctggtgct tccggcgccg gcttggaatc ttccagccag 5520 gaccaacaga aagaattgat gcgaatgcag ttggacaacc agaaagatat tgcgaagatg 5580 cagatgcaga ataatttgca gattgcaggt attcagtccg ctacttctcg tcaaaatacg 5640 aaggattctg tttatgcaca gaatgagatg cttcagtaca atcagcgtga gtcgcaagcg 5700 cgtgttgagt ccatcctcgc caacactgac cttacggtta aacaggccac ccatgaaatc 5760 atgagaatgg cccttactcg tgctcaggag actggtcaac atttaactaa ctctcagatt 5820 atggcattgg agaaaaaggt ttatgcagaa atcggaaaaa ttcatcaaga tactcaaaac 5880 tctcgctatg gtagctctca agttactgct gcggcgaaag atgttacaaa tatgatttct 5940 gatgctgttg gcggttttgc cgactgggct tcccagcaat ggaattcctt ctttaaggat 6000 ggtaagtcta atggtattcc tcttaatacc agaaaataa 6039 //