ID DQ011664; SV 1; circular; genomic DNA; STD; PRO; 2540 BP. XX AC DQ011664; XX DT 15-MAY-2005 (Rel. 83, Created) DT 15-MAY-2005 (Rel. 83, Last updated, Version 1) XX DE Bifidobacterium catenulatum plasmid pBC1, complete sequence. XX KW . XX OS Bifidobacterium catenulatum OC Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; OC Bifidobacteriaceae; Bifidobacterium. OG Plasmid pBC1 XX RN [1] RP 1-2540 RA Alvarez-Martin P., Mayo B.; RT "Sequence and analysis of plasmid pBC1 from Bifidobacterium catenulatum RT L48"; RL Unpublished. XX RN [2] RP 1-2540 RA Alvarez-Martin P., Mayo B.; RT ; RL Submitted (19-APR-2005) to the INSDC. RL IPLA-CSIC, Carretera de Infiesto s/n, Villaviciosa, Asturias 33300, Spain XX FH Key Location/Qualifiers FH FT source 1..2540 FT /organism="Bifidobacterium catenulatum" FT /plasmid="pBC1" FT /strain="L48" FT /mol_type="genomic DNA" FT /db_xref="taxon:1686" FT repeat_region 141..159 FT /rpt_type=INVERTED FT /note="IR1" FT repeat_region 161..179 FT /rpt_type=INVERTED FT /note="IR2" FT repeat_region 231..254 FT /rpt_type=INVERTED FT /note="IR3" FT repeat_region 265..284 FT /rpt_type=INVERTED FT /note="IR4" FT repeat_region 309..332 FT /rpt_type=DIRECT FT repeat_region 333..356 FT /rpt_type=DIRECT FT repeat_region 357..380 FT /rpt_type=DIRECT FT repeat_region 381..394 FT /rpt_type=DIRECT FT repeat_region 536..554 FT /rpt_type=INVERTED FT /note="IR5" FT gene 574..1521 FT /gene="repB" FT CDS 574..1521 FT /codon_start=1 FT /transl_table=11 FT /gene="repB" FT /product="RepB" FT /note="replicase; essential replication protein" FT /db_xref="InterPro:IPR004322" FT /db_xref="InterPro:IPR014820" FT /db_xref="UniProtKB/TrEMBL:Q4U4S9" FT /protein_id="AAY33771.1" FT /translation="MSDEYSQPTLELSRTFEGWWLPRRPLCCDDDYSQLVRRSRTDALR FT CKHIEANPSALVNTIVVDIDDANAKAMALWGHRGMLPNWIAENPANGHAHAGWVLTYPV FT PRTDMARLKPLKLLHAVTEGLRRSVDGDEGYSGLLMKNPLSDAWDSDLCREDTYDLPDL FT VAALEEHGDMPPKSWTRTKRAREVGVGRNCTLFDEARTLAYRQVRRLPDRTPASSDLLR FT EYVRRTCHEINASFPDPLPVREVNDTAKSIHKWITTRSRMWRDGAVANAATFVAIQSAR FT GRKGGRGNKRDKQGNVQNAFKQKAELFGKEMMGQ" FT CDS 1518..1808 FT /codon_start=1 FT /transl_table=11 FT /product="OrfX" FT /db_xref="GOA:Q4U4S8" FT /db_xref="InterPro:IPR010982" FT /db_xref="InterPro:IPR013249" FT /db_xref="UniProtKB/TrEMBL:Q4U4S8" FT /protein_id="AAY33772.1" FT /translation="MTIQTIRKKRPLPAKELAAMYDVSVRTIQRWASQTRKDWIDEQAT FT LRESIRAYHDDEGHTWPQTAEHFGMSQDAVRSRCYRARKERAAEAKAARPE" FT repeat_region 1736..1761 FT /rpt_type=INVERTED FT /note="IR6" FT repeat_region 1817..1835 FT /rpt_type=INVERTED FT /note="IR7" FT repeat_region 1838..1856 FT /rpt_type=INVERTED FT /note="IR8" FT repeat_region 1917..1936 FT /rpt_type=INVERTED FT /note="IR9" FT repeat_region 1941..1981 FT /rpt_type=INVERTED FT /note="IR10" FT gene complement(2000..2284) FT /gene="copG" FT CDS complement(2000..2284) FT /codon_start=1 FT /transl_table=11 FT /gene="copG" FT /product="CopG-like" FT /note="contains conserved motif found in CopG proteins" FT /db_xref="GOA:Q4U4S7" FT /db_xref="InterPro:IPR002145" FT /db_xref="UniProtKB/TrEMBL:Q4U4S7" FT /protein_id="AAY33773.1" FT /translation="MSDFSERDRELLAMFGMGEDQVRDDVERMESETAGHGITGPVHYA FT LHMLPEHGEEMVSMTVKLPKSQLEKVTETARRYHISRSEYVRRQLAGAV" XX SQ Sequence 2540 BP; 473 A; 826 C; 791 G; 450 T; 0 other; agatctccaa acagcacctc caagcaaagt tgataccaga gtaacaccac ggtcacacaa 60 gtggaacacc gttgtggcac aagccgcgcg agcggtctgg aggctccgcc gaccatgggg 120 tacgggtctt cccggcaagc cgattcgcac cgcgaatcga gtgattgtag ctacaatcac 180 gtcgcttgct actccggcct tgcggctttt tcctcggcct cgggttgttg ctcctgcgcc 240 gaagggcgca ggaggtgctg cgttcggttc atgtacatga accgtctagc ttgcttacct 300 tcgatttgat ggacatctcc atgtggatgt ccatggacat atccatgtgg gtgtccatag 360 acgtgtccat gtgggtatcc atggatatat ccatctgagc gcataggaag cgcatgaggg 420 tggatgatcg ttcggtttgg ggtgtttttg gccagatttc gacagttttg ggtaactctg 480 ggaaggagca gcccatgctt tgctgggctg aaatatctga cttggtttta ggcgaacttg 540 accagtggtc aagtacgacg tacactagtg cccatgtctg acgagtattc gcagccgacg 600 cttgagctgt cgcgcacgtt cgagggctgg tggctgcccc ggcgtccgct gtgctgcgac 660 gacgactaca gccagctggt gcgccggagc cgcaccgacg cgctcagatg caagcacatc 720 gaggcgaatc cctcggcgct ggtgaacacg atcgtggtgg acatcgacga cgcgaacgcc 780 aaggcgatgg ccctgtgggg gcaccgtggg atgctgccga actggatcgc ggagaacccg 840 gccaacgggc acgctcacgc gggctgggtg ctgacctacc ccgtgccccg caccgacatg 900 gcccggctca aaccgctgaa gctcctgcac gccgtcaccg aggggctgcg ccgcagcgtg 960 gacggcgacg agggctattc cggcctgctg atgaagaacc cgctgagcga cgcgtgggac 1020 agcgacctgt gccgcgagga cacctacgac ctgcccgacc tcgtggccgc gctcgaagag 1080 cacggggaca tgccgcccaa gagctggacg cgcaccaaac gcgcccgcga ggtcggcgtg 1140 ggccgcaact gcaccttgtt cgacgaggcc cgcaccctcg cctaccgtca ggtgcgccga 1200 ctgcccgacc gcacgcccgc ctcctccgac ctgctgcgcg agtacgtgcg ccgcacctgc 1260 cacgaaatca acgcctcgtt ccccgacccg ctgcccgtgc gcgaggtcaa cgacaccgcc 1320 aagagcatcc acaagtggat caccacgcga agccgcatgt ggagggacgg tgccgtcgcc 1380 aacgccgcca cgttcgtcgc catccaatcc gcgcgcggac gcaaaggcgg tcgcggaaac 1440 aaacgcgaca agcaagggaa cgttcaaaat gccttcaagc aaaaggcaga gctgttcggc 1500 aaggagatga tggggcaatg acgattcaga cgattcgcaa gaagcgtccg cttcccgcca 1560 aggagctggc ggcaatgtac gacgtctccg tgcgcactat tcagcgatgg gcttcacaaa 1620 cccgtaagga ctggatagac gaacaggcaa cgttgcgcga atccatccgt gcctaccacg 1680 atgacgaggg ccatacgtgg ccgcagaccg ccgagcactt cggcatgagc caagacgcgg 1740 tgcgtagccg ctgctaccgc gcgcgcaagg agcgtgcggc cgaggcaaaa gccgcaaggc 1800 cggagtagca agtgacgtga acgtatatac gttcactcga ttcgcaccgc gaatcggctt 1860 gccgggaaga cccgtacccc atggtcggct gcgcctccag accgctcgcg cggcatggtg 1920 acaccgcggt gtcacctatg ggaacacccg tgtgccacga atgatggcac acgggtgttc 1980 cgtcttcgcg cggcggcggt cagacggctc cggcgagctg ccggcgcacg tactcgctgc 2040 ggctgatgtg gtagcgcctg gcggtctccg tgaccttctc cagctgactc ttgggcagct 2100 tgacggtcat gctgaccatc tcctcgccgt gctcggggag catgtgcagc gcgtagtgga 2160 cgggtccggt tatgccgtgg cccgcggtct cggactccat gcgctccacg tcgtccctga 2220 cctgatcctc gcccatgccg aacatcgcca acagctccct gtcgcgttcg ctgaaatcgc 2280 tcatcggtcg ctccttcccc cgcgcaggcg ggctatctcg cttcgggtct tcttcgtcgg 2340 cggcgtcatg gcgtggtaga tgagcgcgcg gtcgccgcgc tgctcgtaga ccatctccac 2400 gtccctgccg cgcccgtcga ggccgatgca gacccacgtg ccgttgtccc tgcgggcgtc 2460 caccatgacg ctcctgaacg ccgcaagcac gtcctccacg gacagctcgg gatgccgctc 2520 atgcacgcgc ggcagcacgt 2540 //