ID D13942; SV 1; circular; genomic DNA; STD; VRL; 4697 BP. XX AC D13942; D00755; M74843; XX DT 23-DEC-1992 (Rel. 34, Created) DT 01-OCT-2008 (Rel. 97, Last updated, Version 12) XX DE Bovine polyomavirus DNA, complete genome. XX KW . XX OS Bovine polyomavirus OC Viruses; dsDNA viruses, no RNA stage; Polyomaviridae; Polyomavirus. XX RN [1] RP 1-4697 RX PUBMED; 2167926. RA Schuurman R., Sol C., van der Noordaa J.; RT "The complete nucleotide sequence of bovine polyomavirus"; RL J. Gen. Virol. 71(PT 8):1723-1735(1990). XX RN [2] RP 1-4697 RA Schuurman R.; RT ; RL Submitted (29-NOV-1990) to the INSDC. RL Rob Schuurman, University of Amsterdam, Academical Medical Center, RL Department of Virology; 15 Meibergdreef, Amsterdam 1105-AZ, The Netherlands RL (Tel:020-5664739, Fax:020-916531) XX CC On Jan 7, 2002 this sequence version replaced gi:332781. CC The sequence is shown in the sense of the late mRNA molecule. XX FH Key Location/Qualifiers FH FT source 1..4697 FT /organism="Bovine polyomavirus" FT /mol_type="genomic DNA" FT /isolation_source="from infected monkey kidney cell FT cultures" FT /db_xref="taxon:10627" FT misc_feature 1..25 FT /note="large-T antigen binding motif" FT misc_feature 29..4697 FT /note="large-T antigen binding motif" FT misc_feature 58..62 FT /note="large-T antigen binding motif" FT rep_origin 64..65 FT /note="origin of replication" FT misc_feature 81..98 FT /note="AT-stretch" FT misc_feature 108..152 FT /note="SP-1 binding motifs" FT CDS 220..576 FT /codon_start=1 FT /product="agnoprotein" FT /note="agnogene" FT /db_xref="UniProtKB/Swiss-Prot:P24850" FT /protein_id="BAA03036.1" FT /translation="MALQWVWLCLRKSLRNNKLMMCRILIELLKILLDVLDSGDYADGP FT SDNPGTGIAKEEIVKCIDFLKMLEAGDDDIDKYGFPELLAAHFANCLAVCLKAARESDA FT MFCCSLEANSSDFN" FT CDS 618..1679 FT /codon_start=1 FT /product="VP2" FT /db_xref="GOA:P24849" FT /db_xref="InterPro:IPR001070" FT /db_xref="UniProtKB/Swiss-Prot:P24849" FT /protein_id="BAA03037.1" FT /translation="MGALLTILAEVFELATATGLSAEAILTGEAFTTAELLQAHIANLV FT EVGELSVAEALAATEVTSEAFEALQSISSVLPTAFIGVAATEGAILGSLITLTATSSAL FT YPSTWKHSTPSANLNQEMALVPYIGDLDIFFPGAETISRFVYSIDPFRWASYLYNIVGR FT AVWEHLFRETRRQIAYHTTDIAGRTAQSIHHTIANFLENVRWTVSHLGTNLYSGLHNYY FT RQLPPLNPPQSRELARRLGVPQPDRQIFEKGEEGMKHPVSAEYVEKYGAPGGAEQRVAP FT DWLLPLLLGLYGDLTPAWEAEVEEEENEQDEEEYEPPQKRIKRTAKSSSKVNNKRGDRS FT ARSPYRTRQHNHN" FT CDS 981..1679 FT /codon_start=1 FT /product="VP3" FT /db_xref="GOA:P24849" FT /db_xref="InterPro:IPR001070" FT /db_xref="UniProtKB/Swiss-Prot:P24849" FT /protein_id="BAA03038.1" FT /translation="MALVPYIGDLDIFFPGAETISRFVYSIDPFRWASYLYNIVGRAVW FT EHLFRETRRQIAYHTTDIAGRTAQSIHHTIANFLENVRWTVSHLGTNLYSGLHNYYRQL FT PPLNPPQSRELARRLGVPQPDRQIFEKGEEGMKHPVSAEYVEKYGAPGGAEQRVAPDWL FT LPLLLGLYGDLTPAWEAEVEEEENEQDEEEYEPPQKRIKRTAKSSSKVNNKRGDRSARS FT PYRTRQHNHN" FT CDS 1540..2637 FT /codon_start=1 FT /product="VP1" FT /db_xref="GOA:P24848" FT /db_xref="InterPro:IPR000662" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/Swiss-Prot:P24848" FT /protein_id="BAA03039.1" FT /translation="MSRMRKNMNPPKKGLKGQPSPVPKLIIKGGIEVLGLRTGPDSTTT FT IELFLNPRMGQSTESEYYGFSDNQRGSTSRTDEDLISAELPRYSLGVVQLPLLNEKLTD FT DVLLMWEAVSCKTEVVGVNTLTTCHGYKKRYSPSAGQGSAMPIEGINYHFFAVGGEPLE FT IQFICEDFKAPYHPTETIVPPKDKLSNKSQVLDPTLKGILDKDGVYPVECWCPDPSKNE FT NTRYFGTYTGGVSTPPVLQFTNTVTTILLDENGVGPLCKADKLYITAADICGFLTQPND FT QQQFRGLPRYMSVTLRKRLVKNPYPIASILTSLFTNSLPPVTSQEMDKQVEEVRIYQGV FT EGLPGDPDMVRYINKFGQEETCIPK" FT polyA_signal complement(2639..2644) FT polyA_signal 2684..2689 FT CDS complement(join(2690..4345,4593..4697)) FT /codon_start=1 FT /product="large T antigen" FT /db_xref="GOA:P24851" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003133" FT /db_xref="InterPro:IPR010932" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016392" FT /db_xref="InterPro:IPR017910" FT /db_xref="UniProtKB/Swiss-Prot:P24851" FT /protein_id="BAA03040.1" FT /translation="MELTSEEYEELRGLLGTPDIGNADTLKKAFLKACKVPEYGTSQWE FT QWWEEFNQGFDEQDLHCDEELEPSDNEEENPAGSQAPGSQATPPKKPRTSPDFPEVLKE FT YVSNALFTNRTYNCFIIFTTAEKGKELYPCIQAAYKCTFIALYMYNGDSVLYIITVGKH FT RVNAMENLCSKKCTVSFLQAKGVLKPQEAYNVCCTFELISQNIQGGLPSSFFNPVQEEE FT KSVNWKLISEFACSIKCTDPLLLMALYLEFTTAPEACKVCDNPRRLEHRRHHTKDHTLN FT ALLFQDSKTQKTICNQACDTVLAKRRLDMKTLTRNELLVQRWQGLFQEMEDLFGARGEE FT HLAHRMAAVMWLNALHPNMPDVIFNYIKMVVENKPKQRYLLLKGPVNCGKTTVAAGLIG FT LCGGAYLNINCPPERLAFELGMAIDQFTVVFEDVKGKKSSKSSLQTGIGFENLDNLRDH FT LDGAVPVNLERKHQNKVTQIFPPGIVTCNEYDIPLTVKIRMYQKVELLHNYNLYKSLKN FT TEEVGKKRYLQSGITWLLLLIYFRSVDDFTEKLQECVVKWKERIETEVGDMWLLTMKEN FT IEQGKNILEK" FT exon complement(2690..4345) FT /number=2 FT /note="large T antigen" FT CDS complement(join(4252..4502,4574..4697)) FT /codon_start=1 FT /product="small t antigen" FT /db_xref="GOA:P24852" FT /db_xref="InterPro:IPR001623" FT /db_xref="UniProtKB/Swiss-Prot:P24852" FT /protein_id="BAA03041.1" FT /translation="MELTSEEYEELRGLLGTPDIGNADTLKKAFLKACKVHHPDKGGNE FT EAMKRLLYLYNKAKIAASATTSQVWYFLIIGYISLKNKNIYLPKIFWLRFQNMAPHSGN FT SGGKNSIKALMSKICIVMRN" FT exon complement(4255..4502) FT /number=2 FT /note="small t antigen" FT intron complement(4346..4592) FT /number=1 FT /note="large T antigen" FT intron complement(4503..4573) FT /number=1 FT /note="small t antigen" FT exon complement(4574..4697) FT /number=1 FT /note="small t antigen" FT exon complement(4593..4697) FT /number=1 FT /note="large T antigen" XX SQ Sequence 4697 BP; 1344 A; 995 C; 949 G; 1409 T; 0 other; tttcctcttt tagggcgcgc ctcggaggcc tgtccactac ttctgtagaa caggttggag 60 gcttaagcct ccggcctcag ctatatagaa aaaaaattac agggtggctc cgcccagact 120 ccgcccatct ctccgcccca tctctccgcc cagtctccgc ctaagggaaa ccagtcccat 180 ccgcaggagt ccctcaggac aagaaacaat aggaacaaca tggccttaca atgggtgtgg 240 ctgtgtctta gaaaaagttt aagaaacaac aaattaatga tgtgtagaat attgattgaa 300 ctattgaaaa tattgttaga tgttctggac agtggggact atgctgatgg gccctcagat 360 aaccctggta caggtattgc taaggaggag attgtgaaat gcattgactt tcttaagatg 420 ctggaggcag gagatgacga catagataag tatgggtttc ctgagctgct tgcggcacac 480 tttgccaact gtttggcagt ttgtttgaaa gcagcgcggg aaagcgacgc catgttttgc 540 tgttctttgg aagcaaacag ctcagatttt aactaaaggt aggccactaa tgggtttatt 600 ttctaggatg ggacaccatg ggagcccttc tcacaatcct agctgaagtt tttgaattag 660 ctactgctac agggctgtca gctgaagcta tcctcactgg agaggccttc actactgccg 720 aactacttca agcccatatt gcaaatcttg ttgaagttgg tgaattgtct gtagcagagg 780 ccttagcagc tacagaggtt actagtgaag ctttcgaggc cttgcaaagc atatcttctg 840 ttcttcctac agcttttatt ggtgttgctg ctacagaggg agctatactt gggtccctta 900 ttactttaac tgctacttcc tcagcccttt atcccagtac ttggaagcac agcactccta 960 gtgcgaacct taatcaggaa atggctttgg ttccttacat aggggatcta gatatatttt 1020 ttcctggggc agaaactatt tctagatttg tgtacagtat tgatcctttt cgctgggcct 1080 catacctgta taatatagta ggaagagctg tatgggaaca tttatttaga gaaacaagga 1140 gacaaatagc ttatcatact acagatattg ctggaagaac agcacaaagc atacatcata 1200 ctattgctaa ctttttggaa aatgttaggt ggactgtatc tcaccttggg acaaacctgt 1260 actctggttt acataattac tatagacagc tcccccctct aaatccccca cagtccagag 1320 agttagcaag gcgtcttggg gttcctcaac cagatagaca aatatttgaa aaaggagagg 1380 agggaatgaa gcatccagtc tcagcagaat atgtagagaa atatggagct cctggaggtg 1440 cagagcaaag agttgctcct gattggctgc tacctcttct tttaggcctc tacggtgatc 1500 ttacccccgc ctgggaagct gaagtagagg aggaagagaa tgagcaggat gaggaagaat 1560 atgaaccccc ccaaaaaagg attaaaagga cagccaagtc cagttccaaa gttaataata 1620 aaagggggga tagaagtgct aggtctccgt acaggaccag acagcacaac cacaattgag 1680 ctgtttttga acccaagaat gggacaaagc actgagtctg aatattatgg cttcagtgac 1740 aaccagaggg gatcaacctc aagaacagat gaagacctaa ttagtgcaga actgcccaga 1800 tatagcttgg gagtggtaca attgcctttg cttaatgaaa aacttactga tgatgttttg 1860 cttatgtggg aagctgtaag ttgcaaaact gaggtcgttg gtgttaacac tttaacaacc 1920 tgtcatggat ataagaaaag gtattcgccc tctgctggtc aaggctcagc aatgcctata 1980 gagggaataa attaccattt ctttgctgta ggtggcgaac cacttgaaat ccagttcata 2040 tgtgaggatt tcaaagcccc ctatcatccc acagaaacta tagtccctcc caaggataaa 2100 ctcagcaaca aatcccaggt gctagatcct accctcaagg gaattctaga caaagatggt 2160 gtgtatcctg ttgagtgttg gtgtccagat ccaagtaaaa atgaaaacac cagatacttt 2220 ggaacatata caggaggtgt tagcactcca cctgtgctgc agttcacaaa taccgtgaca 2280 accattcttc ttgatgagaa tggcgtaggc ccgctttgta aagctgacaa gctatatatc 2340 acagcagcag acatttgtgg ctttctgact cagccaaatg accaacagca atttagaggc 2400 cttcccaggt acatgtctgt gactctcagg aagagactgg tgaagaaccc ataccccatt 2460 gccagcatac tcacatcttt gtttaccaat tccctgccac ctgttactag ccaagaaatg 2520 gataaacagg ttgaggaggt cagaatttac caaggagttg agggcctacc aggagatcct 2580 gacatggtca ggtacatcaa taagtttgga caagaggaaa cttgtattcc aaaatgactt 2640 tattatggta ctgcttgtta cagttgtaga tcaaagcttt atgaataaat catttttcca 2700 gaatattttt tccttgttca atgttttctt tcatggttaa caaccacata tctcccacct 2760 ctgtctcaat tctctctttc cacttgacta cacattcctg cagtttttct gtgaaatcat 2820 ctacagacct aaagtagatg agtaataaga gccaggtgat tccactctgt aaatatcttt 2880 ttttgcccac ttcctcagta tttttaagac ttttatataa gttataatta tgcagtagtt 2940 ctactttttg atacatacgg attttgactg ttaagggtat gtcatattca ttacaggtaa 3000 caattccagg tgggaagatc tgagtcacct tattttgatg ttttctttca aggtttactg 3060 ggactgcacc atctaaatga tctcttaaat tatctaaatt ttcaaaacca attccagtct 3120 gaagggagga tttactggat ttcttacctt taacatcttc aaacacaact gtaaattgat 3180 caattgccat tcctaattca aatgccagtc tttcaggggg acaatttata tttaaataag 3240 ctcccccaca caggcctatg aggcctgcag caactgtagt tttcccacag tttacaggcc 3300 cctttaagag gagatatctc tgttttggtt tattttcaac caccatcttg atataattaa 3360 agataacatc tggcatattg ggatgtaggg cattgagcca cataactgcc gccattcggt 3420 gggctaaatg ctcctccccc cgagcgccaa acaaatcctc catttcttga aaaaggccct 3480 gccacctttg cactaataat tcatttctag ttaaggtttt catatctaat ctcctttttg 3540 ctaacacagt atcacaggcc tgattacata tggttttctg agttttgctg tcctgaaaca 3600 gtaaagcatt taaggtgtgg tctttggtat ggtgtcttct atgctcaagg cgtctgggat 3660 tgtcacatac tttacatgct tcaggtgcag ttgtaaattc taaatataat gccattaata 3720 aaagggggtc tgtacattta atgctgcaag caaattcaga aatgagtttc caatttacag 3780 acttttcttc ttcttgcaca gggttaaaaa aactacttgg cagacctcct tgtatgtttt 3840 gggagataag ttcaaatgtg cagcaaacat tataggcctc ctgaggtttt agaactccct 3900 tggcttgtag gaagctcaca gtacattttt tactacacag attttccatt gcatttaccc 3960 gatgttttcc aacagtgata atatacagaa cagaatcacc attatacata tataaggcaa 4020 taaatgtaca tttgtaggct gcctggatac aaggatataa ttcttttcct ttctcagcag 4080 tagtaaatat tataaagcaa ttatatgttc tatttgtgaa cagagcattg cttacatatt 4140 ctttcaaaac ctcaggaaag tcaggtgatg ttctaggttt cttgggtggg gtggcttgac 4200 ttcccggggc ctggcttccc gccggatttt cttcctcatt atctgatggc tctaattcct 4260 catcacaatg cagatcttgc tcatcaaagc cttgattgaa ttcttcccac cactgttccc 4320 actgtgaggt gccatattct ggaaccttaa ccagaaaatc ttaggtaagt atatattttt 4380 attttttaag cttatatatc caataattaa gaaataccat acctggctag tagtggcact 4440 tgcagcaatt tttgctttat tatacaaata cagaagtctt ttcattgctt cttcattccc 4500 tcctaaaaat aaaatcagat ttactgcctg taaacaagat ttgcatgtac agatcaatac 4560 taaatatatt tacctttatc tggatgatgc accttgcatg ccttcaggaa tgcctttttc 4620 aaagtatctg cattgccaat atcaggggtt cctaagagcc ccctaagctc ctcatattcc 4680 tcagatgtta attccat 4697 //