ID D00624; SV 1; circular; genomic DNA; STD; VRL; 4877 BP. XX AC D00624; XX DT 04-SEP-1990 (Rel. 25, Created) DT 02-OCT-2007 (Rel. 93, Last updated, Version 4) XX DE Chlamydia phage Chp1 DNA, complete genome. XX KW . XX OS Chlamydia virus Chp1 OC Viruses; ssDNA viruses; Microviridae; Gokushovirinae; Chlamydiamicrovirus. XX RN [1] RP 1-4877 RX PUBMED; 2607341. RA Storey C.C., Lusher M., Richmond S.J.; RT "Analysis of the complete nucleotide sequence of Chp1, a phage which RT infects avian Chlamydia psittaci"; RL J. Gen. Virol. 70:3381-3390(1989). XX DR MD5; b1be3ef75121c24196cfeb9b89d775ec. DR EuropePMC; PMC3091885; 21572966. XX CC The N-terminal amino acid sequences of the three structural CC proteins VP1,VP2 and VP3 were determined and it was found that they CC were encoded by ORFs 1, 2 and 3 respectively. XX FH Key Location/Qualifiers FH FT source 1..4877 FT /organism="Chlamydia virus Chp1" FT /mol_type="genomic DNA" FT /note="2 bp upstream of AccI site" FT /note="synonym: Bacteriophage chp1" FT /db_xref="taxon:2003327" FT CDS join(4460..4877,1..1373) FT /codon_start=1 FT /transl_table=11 FT /product="VP1" FT /note="ORF 1" FT /db_xref="GOA:P19192" FT /db_xref="InterPro:IPR003514" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/Swiss-Prot:P19192" FT /protein_id="BAA00515.1" FT /translation="MAKGRKLPSVMKNRFSEVPTATIRRSSFDRSHGYKTTFDMDYLVP FT FFVDEVLPGDTFSLSETHLCRLTTLVQPIMDNIQLTTQFFFVPNRLLWDNWESFITGGD FT EPVAWTSTNPANEYFVPQVTSPDGGYAENSIYDYFGLPTKVANYRHQVLPLRAYNLIFN FT EYYRDENLQESLPVWTGDADPKVDPTTGEESQEDDAVPYVYKLMRRNKRYDYFTSALPG FT LQKGPSVGIGITGGDSGRLPVHGLAIRSYLDDSSDDQFSFGVSYVNASQKWFTADGRLT FT SGMGSVPVGTTGNFPIDNVVYPSYFGTTVAQTGSPSSSSTPPFVKGDFPVYVDLAASSS FT VTINSLRNAITLQQWFEKSARYGSRYVESVQGHFGVHLGDYRAQRPIYLGGSKSYVSVN FT PVVQNSSTDSVSPQGNLSAYALSTDTKHLFTKSFVEHGFVIGLLSATADLTYQQGLERQ FT WSRFSRYDYYWPTFAHLGEQPVYNKEIYCQSDTVMDPSGSAVNDVPFGYQERYAEYRYK FT PSKVTGLFRSNATGTLDSWHLSQNFANLPTLNETFIQSNTPIDRALAVPDQPDFICDFY FT FNYRCIRPMPVYSVPGLRRI" FT regulatory 1079..1081 FT /note="putative" FT /regulatory_class="ribosome_binding_site" FT CDS 1087..1182 FT /codon_start=1 FT /transl_table=11 FT /note="ORF 7" FT /db_xref="UniProtKB/Swiss-Prot:P19187" FT /protein_id="BAA00504.1" FT /translation="MCLLVIKSVMLSIVISLRRLLDYLDLTLQVL" FT repeat_region 1386..1434 FT /note="hairpin-like structure h1" FT repeat_region 1448..1492 FT /note="hairpin-like structure h1" FT repeat_region 1500..1506 FT /note="hairpin-like structure h2" FT regulatory 1510..1513 FT /note="putative" FT /regulatory_class="ribosome_binding_site" FT repeat_region 1514..1520 FT /note="hairpin-like structure h2" FT CDS 1518..2309 FT /codon_start=1 FT /transl_table=11 FT /product="VP2" FT /note="ORF 2" FT /db_xref="GOA:P19193" FT /db_xref="UniProtKB/Swiss-Prot:P19193" FT /protein_id="BAA00505.1" FT /translation="MSFAENVGRFIGNSVNSVGSVIGDGLKGFNSTQSISSAKQANLLN FT NLPLPSLDNVLNIGMFGGLASGLLSYRAAKKQNKVMQDIANRQMAFQERMSSTAVRRHV FT EDLKKAGLNPLLALGGSASTPQGAFYSPVNPMESGLNSAISVADKVFDYQRLAHADFQG FT RLNSAMSVVQLASAVQDYKRNYGKFGEVAYWFDRYAGKLLPAMLFYLFRKHPVGRAVSA FT ANSGYAVAKGAKGVNFKFSNMSSTAVQRHNSRYNVSKGWRR" FT regulatory 1776..1778 FT /note="putative" FT /regulatory_class="ribosome_binding_site" FT CDS 1782..2309 FT /codon_start=1 FT /transl_table=11 FT /note="ORF 2a" FT /db_xref="GOA:P19193" FT /db_xref="UniProtKB/Swiss-Prot:P19193" FT /protein_id="BAA00506.1" FT /translation="MAFQERMSSTAVRRHVEDLKKAGLNPLLALGGSASTPQGAFYSPV FT NPMESGLNSAISVADKVFDYQRLAHADFQGRLNSAMSVVQLASAVQDYKRNYGKFGEVA FT YWFDRYAGKLLPAMLFYLFRKHPVGRAVSAANSGYAVAKGAKGVNFKFSNMSSTAVQRH FT NSRYNVSKGWRR" FT regulatory 1792..1796 FT /note="putative" FT /regulatory_class="ribosome_binding_site" FT CDS 1800..2309 FT /codon_start=1 FT /transl_table=11 FT /note="ORF 2b" FT /db_xref="GOA:P19193" FT /db_xref="UniProtKB/Swiss-Prot:P19193" FT /protein_id="BAA00507.1" FT /translation="MSSTAVRRHVEDLKKAGLNPLLALGGSASTPQGAFYSPVNPMESG FT LNSAISVADKVFDYQRLAHADFQGRLNSAMSVVQLASAVQDYKRNYGKFGEVAYWFDRY FT AGKLLPAMLFYLFRKHPVGRAVSAANSGYAVAKGAKGVNFKFSNMSSTAVQRHNSRYNV FT SKGWRR" FT regulatory 2064..2067 FT /note="putative" FT /regulatory_class="ribosome_binding_site" FT CDS 2071..2319 FT /codon_start=1 FT /transl_table=11 FT /note="ORF 6" FT /db_xref="UniProtKB/Swiss-Prot:P19191" FT /protein_id="BAA00508.1" FT /translation="MESLVKLHIGLIDMLASCCLLCFSICLESIQLEERFLLLILVMLL FT LRVLKVLILSFRICLVRLFSVIILDIMFRKDGEGNEV" FT regulatory 2299..2302 FT /note="putative" FT /regulatory_class="ribosome_binding_site" FT CDS 2309..2746 FT /codon_start=1 FT /transl_table=11 FT /product="VP3" FT /note="ORF 3" FT /db_xref="GOA:P19194" FT /db_xref="InterPro:IPR014131" FT /db_xref="UniProtKB/Swiss-Prot:P19194" FT /protein_id="BAA00509.1" FT /translation="MKFRTIYDEERPAPVLECKDESLCLAYQCTETSIEKLVKLANQNP FT SYLHAFAGDPTRQPEYGECPSPLDYQDALEIVARGEEAFYSLPANIRVNFSNPMEFLSW FT LEDPANYDEVEKLGLLDPEKVQIRKSKLQKDQKEEVSSEEK" FT repeat_region 2334..2339 FT /note="hairpin-like structure h3" FT repeat_region 2345..2350 FT /note="hairpin-like structure h3" FT regulatory 2810..2813 FT /note="putative" FT /regulatory_class="ribosome_binding_site" FT CDS 2823..2933 FT /codon_start=1 FT /transl_table=11 FT /note="ORF 8" FT /db_xref="GOA:P19188" FT /db_xref="UniProtKB/Swiss-Prot:P19188" FT /protein_id="BAA00510.1" FT /translation="MVRRRRLRRRISRRIFRRTVARVGRRRRSFRGGIRF" FT repeat_region 2946..2954 FT /note="hairpin-like structure h4" FT regulatory 2946..2950 FT /note="putative" FT /regulatory_class="ribosome_binding_site" FT CDS 2960..4159 FT /codon_start=1 FT /transl_table=11 FT /note="ORF 4" FT /db_xref="GOA:P19189" FT /db_xref="UniProtKB/Swiss-Prot:P19189" FT /protein_id="BAA00511.1" FT /translation="MRYSLDSYLISVYIRLTQRKSDYMCTNPIIPIVQYKVPVKSSLDV FT VDWSKFRSNFKANLFFFEKNVVRRAVSNVDEAFRFTEQLKQVSYLSTFDLDGYHQVKQF FT SFPLPCRKCSECLQKRSKDLAVQATMEARSHEENSVLILTYDNDHLGDNILDYDHIRVF FT QKRLRRYVDYHYGKKIKFLTVGEYGDKKGRMHWHMIVFGWKPKSEEQLEPYLGGKYRTD FT VRYRSRKLKELWKFGYVDVDEATDGNIFYVARYVQKKFVVGCDLDSSKSSSRREKKTAS FT QALGLDYFFSYLRQFLKTKRIVLNGFRYGFPRYFKDLLRKLVSEDSEFDTEYYNALRKR FT LLSVCSYSMVNKYFTYLECLVEVLPVLNFHDLYQRALRYMDQSILKPHASDHDGEYNTT FT " FT repeat_region 2963..2972 FT /note="hairpin-like structure h4" FT regulatory 3532..3535 FT /note="putative" FT /regulatory_class="ribosome_binding_site" FT CDS 3539..4159 FT /codon_start=1 FT /transl_table=11 FT /note="ORF 4a" FT /db_xref="GOA:P19189" FT /db_xref="UniProtKB/Swiss-Prot:P19189" FT /protein_id="BAA00512.1" FT /translation="MHWHMIVFGWKPKSEEQLEPYLGGKYRTDVRYRSRKLKELWKFGY FT VDVDEATDGNIFYVARYVQKKFVVGCDLDSSKSSSRREKKTASQALGLDYFFSYLRQFL FT KTKRIVLNGFRYGFPRYFKDLLRKLVSEDSEFDTEYYNALRKRLLSVCSYSMVNKYFTY FT LECLVEVLPVLNFHDLYQRALRYMDQSILKPHASDHDGEYNTT" FT regulatory 4158..4162 FT /note="putative" FT /regulatory_class="ribosome_binding_site" FT CDS 4168..4458 FT /codon_start=1 FT /transl_table=11 FT /note="ORF 5" FT /db_xref="UniProtKB/Swiss-Prot:P19183" FT /protein_id="BAA00513.1" FT /translation="MHMFYYSIYDRKARSYGDLISFPSGEKEAAIRWFRDVVMDSDSKN FT ILHRYPEDFDFCYIGYFDKDKGRFYPVDAGIVTIINAGEFFLDSEYRQEEV" FT regulatory 4271..4273 FT /note="putative" FT /regulatory_class="ribosome_binding_site" FT CDS 4282..4458 FT /codon_start=1 FT /transl_table=11 FT /note="ORF 5a" FT /db_xref="UniProtKB/Swiss-Prot:P19183" FT /protein_id="BAA00514.1" FT /translation="MDSDSKNILHRYPEDFDFCYIGYFDKDKGRFYPVDAGIVTIINAG FT EFFLDSEYRQEEV" FT regulatory 4450..4454 FT /note="putative" FT /regulatory_class="ribosome_binding_site" XX SQ Sequence 4877 BP; 1305 A; 682 C; 1098 G; 1792 T; 0 other; gtctacctac taaagttgca aattatcggc atcaagtttt gccattaaga gcatataatt 60 tgatatttaa tgagtattat cgtgatgaga atcttcagga gtctttacct gtttggacag 120 gagatgctga tcctaaggtt gatccgacta ctggagaaga atctcaagag gatgatgcag 180 ttccttatgt atataagtta atgcgtcgca ataagcgata tgattatttt acttctgctc 240 ttcctggttt gcagaaaggt ccttctgttg gaataggtat tacaggtgga gattcaggac 300 gtcttccagt tcatggttta gcgattagat cttatttgga tgattcttct gatgatcagt 360 ttagttttgg tgtttcttat gtaaacgctt cacagaaatg gtttactgca gatggtcgtt 420 tgacttctgg aatgggtagt gttcctgttg gtacaactgg taattttcct attgataatg 480 ttgtgtatcc atcttatttt ggtacgactg ttgcccaaac tggtagtcca tcttcttctt 540 ctactccgcc ttttgttaag ggtgattttc ctgtttatgt tgatttagcg gcttcatctt 600 cagttacgat taattcgctt cgtaatgcga ttactttgca acagtggttt gagaagagtg 660 ctcgttatgg aagtagatat gttgaatctg ttcaaggtca ttttggcgtt catcttggtg 720 attatcgtgc tcagcgacca atctatttag gtggatctaa gtcttatgtt tctgttaatc 780 ctgtagtaca gaattcatct acagattcag tttctcctca aggaaatctt tctgcttatg 840 cattatctac agatactaaa catttgttta cgaagtcttt tgttgagcat ggttttgtta 900 taggtcttct ttcagctaca gcggatttaa cttatcagca aggtttagag cgtcagtggt 960 caagatttag tcgttatgat tattattggc ctacttttgc tcatttggga gagcagcctg 1020 tttataataa agagatttat tgccaatcag atactgttat ggatcctagt ggttctgcgg 1080 ttaatgatgt gccttttggt tatcaagagc gttatgctga gtatcgttat aagccttcga 1140 aggttactgg attatttaga tctaacgcta caggtactct agattcttgg catttgtctc 1200 agaattttgc gaatttacct actttgaatg agacttttat tcagagtaat acgccgatag 1260 atagagcgtt agcagttcct gatcagcctg attttatttg tgacttttac tttaattatc 1320 gttgtattag gcctatgccg gtgtattctg ttccaggttt aagaaggatt taatatccca 1380 acgagcgtga cccagtaaat gcgagaagag cagcgtaaga aaatattagt caatgtaacg 1440 tagtggaatt gattaatact tttctgaagc gaaaattttg cattgggtca cgtaagtgac 1500 ataattttag aggaattatg agtttcgcgg agaatgttgg tagattcata ggaaattctg 1560 tgaattctgt cggaagtgtt ataggagatg gtcttaaagg ttttaattcc actcagtcta 1620 tttccagtgc taagcaggca aaccttctta ataatttgcc tttgccttct ttagataatg 1680 ttttaaatat tggaatgttt ggcggtcttg cttcaggcct tctttcttat agagctgcta 1740 aaaagcaaaa taaggttatg caggatattg ctaataggca aatggctttt caggagcgaa 1800 tgtctagtac ggctgttcga cgtcatgtag aggacttaaa gaaggcaggt ttgaatccgc 1860 ttttagcttt aggtggatct gcttctactc ctcaaggtgc tttttattct cctgttaatc 1920 ctatggagtc aggacttaat tctgcgatat cagttgcgga taaagttttt gattatcagc 1980 gtttagctca tgctgatttt cagggtcgtt tgaattctgc tatgagtgtt gttcagttgg 2040 cttctgctgt tcaggattat aaaaggaact atggaaagtt tggtgaagtt gcatattggt 2100 ttgatcgata tgctggcaag ttgttgcctg ctatgctttt ctatttgttt agaaagcatc 2160 cagttggaag agcggtttct gctgctaatt ctggttatgc tgttgctaag ggtgctaaag 2220 gtgttaattt taagttttcg aatatgtcta gtacggctgt tcagcgtcat aattctagat 2280 ataatgtttc gaaaggatgg agaaggtaat gaagtttaga acgatttatg atgaggagcg 2340 tcctgctcct gttttggagt gtaaggatga aagtctatgt ttggcttatc aatgtactga 2400 gacgtctatt gaaaaattgg ttaagttagc gaatcagaat ccttcttatt tacatgcatt 2460 tgctggtgat cctactcgtc aacctgaata tggagagtgt ccttctcctt tggattatca 2520 agatgcttta gagattgtag ctcgtggtga agaggctttt tattctttac ctgcgaatat 2580 tcgagttaat ttttcgaatc ctatggagtt tttgtcatgg ttagaggacc ctgctaatta 2640 tgatgaagtt gagaagttag gtttattgga tcctgagaaa gttcagataa gaaaatctaa 2700 gttacaaaaa gatcaaaaag aagaggtttc ttctgaggaa aaatagcgag ggctatatcc 2760 tcttggctat atagcccgag cgacacaaaa tatataaaac cttaatgaaa ggatgtattt 2820 cgatggttcg tagaagacgt ttgagaagaa gaataagtag aagaattttt agaagaacag 2880 tagctagagt tggtagaagg cgaaggtctt ttcgtggtgg tattagattt taaggcaaaa 2940 aaaatggagt atctttttaa tgagatactc cttagactca tatctaatat ccgtttatat 3000 ccgtttaaca caaaggaaat cagattatat gtgtactaat cctattatac ctatagttca 3060 atataaagtt ccagttaaat cttcgttaga tgttgtggat tggtctaaat ttaggtctaa 3120 ctttaaggct aatctgtttt ttttcgagaa gaatgttgtt cgtcgtgctg taagtaatgt 3180 agatgaagct tttagattta ctgagcaact gaagcaagtt agttatttat ctacttttga 3240 tcttgatggt tatcatcagg tgaagcagtt ttcttttcct cttccttgta ggaaatgttc 3300 tgagtgtttg cagaagcgtt ctaaggattt agcggttcaa gctactatgg aagcgcgttc 3360 tcatgaggag aattctgttt tgattcttac ttatgataat gatcatttag gcgataatat 3420 tttagattat gatcatattc gagtttttca gaagcgtttg cgtcgttatg tggattatca 3480 ctatggcaaa aagattaagt ttttgactgt aggagaatat ggtgataaga aaggtcgtat 3540 gcattggcat atgattgttt ttggttggaa gccgaaatct gaggaacaat tagagcctta 3600 tttaggagga aagtatcgaa cggatgttcg atatcgttct agaaagctta aggaactatg 3660 gaaatttggt tatgttgatg tagatgaagc tacagatggt aatatttttt atgtagctcg 3720 ttatgtgcag aaaaagtttg ttgttggatg tgatttagat tcttctaagt ctagttctag 3780 gagagagaag aagacagctt ctcaagcttt aggtttagat tatttttttt cttatttaag 3840 gcaatttctt aagactaaga ggatagtttt aaatggtttt agatatggat ttccgcgtta 3900 ttttaaggat ttattgagga agttggtttc agaggattcg gagtttgata ctgagtatta 3960 taatgcttta aggaaaaggt tacttagtgt atgtagttat tcgatggtaa ataaatattt 4020 tacctattta gaatgcttag ttgaagtttt gccagttttg aattttcatg atttatacca 4080 gcgtgcgctt aggtatatgg atcaatctat tcttaagccg catgctagtg atcatgatgg 4140 agaatataat actacttagg agatctgatg catatgtttt attattcaat ttatgatcga 4200 aaggctcggt cttatggaga tttgatctct tttccttcag gtgagaaaga ggctgctatt 4260 cgatggttta gagatgttgt gatggattca gattctaaga atattttgca tcgatatcct 4320 gaggattttg atttttgcta tattggttat tttgataagg ataaaggacg tttttatcct 4380 gtggatgctg ggatagttac gattattaat gcaggagagt tttttttaga ttctgagtat 4440 agacaagaag aggtttaata tggctaaagg acgaaagctt ccgtcggtta tgaagaatcg 4500 tttttcagag gtaccgacag ctacgattag gcgttcaagt tttgatcggt ctcacggtta 4560 taagactacg tttgatatgg attatttagt tccatttttt gttgatgaag ttcttcctgg 4620 agatactttt tctttatcgg agacgcatct ttgtcgtttg actacgttag ttcaaccgat 4680 tatggataat attcagttaa ctactcagtt tttctttgtt cccaatcgtt tgctttggga 4740 taattgggaa tcgtttatta caggtggtga tgagcctgta gcttggacaa gcactaatcc 4800 tgctaatgag tattttgttc ctcaagtaac ttctcctgat ggaggttacg cagagaattc 4860 tatttatgac tattttg 4877 //