ID CP001858; SV 1; circular; genomic DNA; STD; PRO; 2801 BP. XX AC CP001858; XX PR Project:PRJNA32583; XX DT 21-JAN-2010 (Rel. 103, Created) DT 17-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Archaeoglobus profundus DSM 5631 plasmid pArcpr01, complete sequence. XX KW . XX OS Archaeoglobus profundus DSM 5631 OC Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; OC Archaeoglobus. OG Plasmid pArcpr01 XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX PUBMED; 21304717. RA von Jan M., Lapidus A., Del Rio T.G., Copeland A., Tice H., Cheng J.F., RA Lucas S., Chen F., Nolan M., Goodwin L., Han C., Pitluck S., Liolios K., RA Ivanova N., Mavromatis K., Ovchinnikova G., Chertkov O., Pati A., Chen A., RA Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Saunders E., RA Brettin T., Detter J.C., Chain P., Eichinger K., Huber H., Spring S., RA Rohde M., Goker M., Wirth R., Woyke T., Bristow J., Eisen J.A., RA Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P.; RT "Complete genome sequence of Archaeoglobus profundus type strain (AV18)"; RL Stand Genomic Sci 2(3):327-346(2010). XX RN [2] RP 1-2801 RG US DOE Joint Genome Institute (JGI-PGF) RA Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., RA Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., RA Ovchinnikova G., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., RA Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., RA Wu D., Wirth R., Huber H., Eichinger K., Klenk H.-P., Eisen J.A.; RT "The complete plasmid of Archaeoglobus profundus DSM 5631"; RL Unpublished. XX RN [3] RP 1-2801 RG US DOE Joint Genome Institute (JGI-PGF) RA Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., RA Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., RA Ovchinnikova G., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., RA Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., RA Wu D., Wirth R., Huber H., Eichinger K., Klenk H.-P., Eisen J.A.; RT ; RL Submitted (07-JAN-2010) to the INSDC. RL US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA RL 94598-1698, USA XX DR StrainInfo; 159331; 1. XX CC URL -- http://www.jgi.doe.gov CC JGI Project ID: 4085236 CC Source DNA and organism available from Hans-Peter Klenk at the CC German Collection of Microorganisms and Cell Cultures (DSMZ) CC (hans-peter.klenk@dsmz.de) CC Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) CC David Bruce (microbe@cuba.jgi-psf.org) CC Whole genome sequencing and draft assembly at JGI-PGF CC Finishing done by JGI-LANL CC Annotation by JGI-ORNL and JGI-PGF CC The JGI and collaborators endorse the principles for the CC distribution and use of large scale sequencing data adopted by the CC larger genome sequencing community and urge users of this data to CC follow them. It is our intention to publish the work of this CC project in a timely fashion and we welcome collaborative CC interaction on the project and analysis. CC (http://www.genome.gov/page.cfm?pageID=10506376). CC ##Metadata-START## CC Organism Display Name :: Archaeoglobus profundus Av18, DSM 5631 CC Culture Collection ID :: DSM 5631, JCM 9629, NBRC 100127 CC GOLD Stamp ID :: Gi02909 CC Greengenes ID :: 71597 CC Isolation Site :: "Deep sea hydrothermal vents; Mexico, Gulf CC of California, Guaymas Basin" CC Isolation Country :: Mexico CC Oxygen Requirement :: Anaerobe CC Motility :: Motile CC Temperature Range :: Hyperthermophile CC Temperature Optimum :: 85C CC Gram Staining :: gram- CC Biotic Relationship :: Free living CC Diseases :: None CC Habitat :: Deep sea, Hydrothermal vent, Marine CC Energy Source :: Chemolithoautotroph CC ##Metadata-END## XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="Archaeoglobus profundus DSM 5631" FT /plasmid="pArcpr01" FT /strain="DSM 5631" FT /mol_type="genomic DNA" FT /db_xref="taxon:572546" FT gene complement(16..609) FT /locus_tag="Arcpr_1855" FT CDS complement(16..609) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Arcpr_1855" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2RIC5" FT /inference="ab initio prediction:Prodigal:1.4" FT /protein_id="ADB58898.1" FT /translation="MSKECSHQEAVREVVRTLKEYGYIVKTEAWASTILGHRDCYIDSS FT GDFDVERWYRDFKFNVANMFLGRHSPWISIHNPNFQTRLDVVGLYYADCEELSLYSFFA FT RTDPFEVAKRTILVEVEHRHSLEEAIKRIKDYPAGRKVILWTGGEIGGVLEEIPIVVAK FT KYEGDCYISLEFTDILEEHIREIKGKNRHKWLPF" FT gene 917..1324 FT /locus_tag="Arcpr_1856" FT CDS 917..1324 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Arcpr_1856" FT /product="exosome complex exonuclease" FT /note="KEGG: exosome complex exonuclease" FT /db_xref="GOA:D2RIC6" FT /db_xref="UniProtKB/TrEMBL:D2RIC6" FT /inference="similar to AA sequence:KEGG:TVAG_359820" FT /protein_id="ADB58899.1" FT /translation="MGSQEVGRIEEEVVEERRQEEEEIDEEEATGSALLTAEEFDKKIE FT EIKAKVREAVQEALANTLADLLEKEEKEEKRKDETKAEELPKCPKNLSWLKKMFEILPL FT DILRNSKLWRYRHCVWALQEAEKEAEKFRNS" FT gene 1399..2550 FT /locus_tag="Arcpr_1857" FT CDS 1399..2550 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Arcpr_1857" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2RIC7" FT /inference="ab initio prediction:Prodigal:1.4" FT /protein_id="ADB58900.1" FT /translation="MRRPPLNGSKLRDNLKFAISKDHLEEAVVLLRLREELTGLTVTQL FT ARFLRKKLYPKASKREIYKKVHRILDKLEEKEFVKTKTIGNYRFAKITLEGLRFLAETL FT PEWSKQAEVDLNNRLGCTKHLITNYRASREWFEIAIRLLTKPVERFEPIDKELLVLNFT FT TWLENISDKVLVFMDPETRVVVTKPYRTRFNSPEYIKLLLAKYDEAWKIASENYDVGVF FT LTVTLPPIFPLKIEQYLLSYILHRLRNWLKRRYGFTPPSIVGNEPQESLNFHKHIVFFG FT ISRIMDKRELTLWLDDKVIRFLENMGHHIQKTVNNRLKPEEVKVFNKLGKKLLKRYLRY FT KKKHKGYQGPVNWITKVYKDENGKWVFENLPPDLQGNKKDGTF" FT gene 2537..2788 FT /locus_tag="Arcpr_1858" FT CDS 2537..2788 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Arcpr_1858" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D2RIC8" FT /inference="ab initio prediction:Prodigal:1.4" FT /protein_id="ADB58901.1" FT /translation="MELFDGANASVSDYIKKYIIKNLNSALEGTDKEKDPKLAWYWLVR FT VPFYTISPKLRKPQENPPPLGLVFLGSYSEWDLSYLLV" XX SQ Sequence 2801 BP; 892 A; 548 C; 568 G; 793 T; 0 other; actctgttta tgcctttaaa aaggtagcca tttatgtcta ttttttcctt taatttctct 60 tatatgctcc tccaaaatat cagtaaattc taaagaaatg taacaatcac cttcatactt 120 ctttgccact actataggaa tttcctcaag cactcctcct atctctccac cagtccagag 180 tataactttt ctcccagctg ggtaatcctt tatccttttt atagcctcct cgagagagtg 240 tctatgctca acttctacca gtatagttct tttagccact tcaaatgggt ctgtcctagc 300 aaaaaaacta tacaaagaca gctcttcgca gtcagcgtag tataacccca ctacatctag 360 ccttgtctgg aagttaggat tgtgtatgct aatccatggg ctatgtcttc caaggaacat 420 gttagctaca ttaaacttga agtctctata ccatctctcg acgtcaaaat ctcccgaact 480 gtctatgtaa cagtctctat gtcctaaaat tgtgctagcc caagcttccg ttttaacgat 540 gtatccatat tctttgagcg ttcttaccac ttctcttacc gcctcttgat gggaacactc 600 cttagacatc ttagttcacc tctaacctat ctagctaagg ttagcttaac tgttggagac 660 cataactttt ttaaccattt ttaaccatat ttttcaataa aaaatgttaa atatcatata 720 gtaatacaca ttccatggcc cacgtaacta taaatgttag cattgaacct ctttcctatg 780 aaaatctgga agaatattgt agagttttgg gtttgtcgaa gtctcgggta atcaatttgc 840 tgttaaagga ccctttgaac gctattgccc ttagccttgc atgtgagctt gtcaaatctt 900 tgaggaggtg atagatgtgg gtagtcaaga ggttggtaga attgaagagg aagttgtaga 960 ggagaggaga caggaagagg aggaaataga cgaggaggaa gctacgggaa gtgctctcct 1020 tactgctgaa gagttcgata aaaaaattga agaaataaag gccaaagtcc gagaagctgt 1080 ccaagaggcc ttagcaaata cattagctga tcttttggag aaagaagaga aagaagaaaa 1140 aagaaaagac gaaacaaaag ctgaagagtt gccaaagtgt cctaaaaacc tctcatggct 1200 caaaaaaatg ttcgagattt tgccattgga cattttaaga aatagcaaac tttggcgata 1260 tagacactgt gtttgggcgt tacaggaggc agagaaagaa gctgagaaat ttaggaattc 1320 ttaaataata tgtcaaacgt tggtttttcg gggtcggcgg tatgcggacc gccggccccc 1380 acataaaaca aagcagagat gaggcgaccc cccttgaatg ggagtaagct acgagacaat 1440 ttaaagtttg ccatttcgaa agatcacctt gaagaagccg tagttttact aaggcttaga 1500 gaggagctta caggattgac agtaactcag ttagctcggt tcttacgtaa aaagctgtat 1560 cctaaagcct ccaaaagaga aatttacaag aaagtccata gaattctcga taaactcgaa 1620 gagaaagaat ttgttaagac aaaaacaata ggaaattacc gttttgccaa aataacgctt 1680 gaaggtcttc gctttttggc ggaaacgctt ccagaatgga gcaagcaagc cgaagttgac 1740 ttgaacaata ggctcgggtg cacgaaacac ctcatcacca actatcgagc ttcccgtgaa 1800 tggttcgaaa ttgccattag actacttaca aagcccgttg agaggtttga gccgatagat 1860 aaggagcttt tggttctaaa cttcaccaca tggctcgaaa atatcagcga taaagtgctt 1920 gttttcatgg acccagaaac aagggtagtt gttaccaagc cttacaggac acgttttaac 1980 tcacctgagt acatcaagct cctgttagcc aagtatgacg aggcttggaa gatagcttca 2040 gaaaactatg atgttggggt atttttgacg gtaacgcttc ctccaatctt tccgctaaag 2100 atagagcaat atcttcttag ctatatcctc cataggctta ggaattggct taaaagacgt 2160 tatggtttta ctccaccgtc tattgtcgga aatgagccac aggagagctt aaacttccat 2220 aaacatattg tattcttcgg aatttcaaga ataatggata agagggagct aacgctttgg 2280 ttagacgata aagtcattag attccttgaa aacatgggtc atcatatcca aaagacggta 2340 aacaatcgtc taaagcctga agaagttaag gtatttaata agcttggaaa gaagctccta 2400 aaacgctatc tgagatacaa gaagaagcac aagggttatc aaggacctgt aaattggata 2460 acaaaggttt acaaggacga aaacggtaaa tgggtttttg agaatctgcc tccagattta 2520 cagggtaata agaaggatgg aactttttga tggagctaac gcttcagttt ccgactacat 2580 taaaaaatac atcatcaaaa acctcaactc agctttagag ggaacagaca aagagaaaga 2640 ccccaaatta gcttggtatt ggcttgtcag agttccattt tacactataa gccctaagct 2700 aagaaaacct caggaaaatc ctccaccttt ggggcttgtt tttcttggat cctattcgga 2760 atgggatttg tcttatttac tagtttaatg cctcttatta g 2801 //