ID CP001714; SV 1; circular; genomic DNA; STD; PRO; 7530 BP. XX AC CP001714; XX PR Project:PRJNA17947; XX DT 23-NOV-2009 (Rel. 102, Created) DT 23-NOV-2009 (Rel. 102, Last updated, Version 1) XX DE Chlamydophila pneumoniae LPCoLN plasmid, complete sequence. XX KW . XX OS Chlamydophila pneumoniae LPCoLN OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; OC Chlamydia/Chlamydophila group; Chlamydia. OG Plasmid unnamed XX RN [1] RP 1-7530 RX DOI; 10.1128/JB.00746-09. RX PUBMED; 19749045. RA Myers G.S., Mathews S.A., Eppinger M., Mitchell C., O'Brien K.K., RA White O.R., Benahmed F., Brunham R.C., Read T.D., Ravel J., Bavoil P.M., RA Timms P.; RT "Evidence that human Chlamydia pneumoniae was zoonotically acquired"; RL J. Bacteriol. 191(23):7225-7233(2009). XX RN [2] RP 1-7530 RA Myers G.S.A., Mathews S.A., Eppinger M., Mitchell C., O'Brien K.K., RA Creasy T.H., Galens K., Liu X., Tallon L.J., White O.R., Benahmed F., RA Brunham R.C., Read T.D., Ravel J., Bavoil P.M., Timms P.; RT ; RL Submitted (25-AUG-2009) to the INSDC. RL Institute for Genome Sciences, University of Maryland School of Medicine, RL 801 West Baltimore Street, Baltimore, MD 21201, USA XX DR GR; CP001714_GR. XX CC Source DNA and bacteria are available from Professor Peter Timms, CC p.timms@qut.edu.au. XX FH Key Location/Qualifiers FH FT source 1..7530 FT /organism="Chlamydophila pneumoniae LPCoLN" FT /plasmid="unnamed" FT /strain="LPCoLN" FT /mol_type="genomic DNA" FT /note="synonym: Chlamydia pneumoniae LPCoLN" FT /db_xref="taxon:406984" FT gene 6..791 FT /gene="soj" FT /locus_tag="CPK_ORFA00001" FT CDS 6..791 FT /codon_start=1 FT /transl_table=11 FT /gene="soj" FT /locus_tag="CPK_ORFA00001" FT /product="sporulation initiation inhibitor protein Soj" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:D1A1A4" FT /protein_id="ACZ33582.1" FT /translation="MKTIAFCSFKGGTGKTTLSLNVGCNLAQYSNKKVLLVDLDPQANL FT TTGLGVQSCYESNLNDIFRSSGNVRDIIQDTKIENLHIVPANILIEEFREFNRDSVLNT FT SHLHSSLQLIESNYDLCILDTPPSLGTLTEEAFIASDHLIVCLTPEPFSILGLQKIKEF FT CSVLPKKKDLSVLGIVFSFWDGRNSTNSTYLNIIESIYEGKVLSSKVRRDITLSRSLLK FT ETSIANAYPNSRASHDILRLTKEIEDKLFNKEMSAQEVL" FT gene 788..1558 FT /locus_tag="CPK_ORFA00002" FT CDS 788..1558 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="CPK_ORFA00002" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR005350" FT /db_xref="UniProtKB/TrEMBL:D1A1A5" FT /protein_id="ACZ33583.1" FT /translation="MSKLVKEASVFFSKNKKNTEEEFQKKEIVKDVFSVSLTISEANRL FT DSLFNKYTLKDEKKDIFLSIKTLTCQIKSIQKQHVLLIGEKIYKVRELLKTIESTETTF FT SAWISLVFSTKSSAYNALAYYELFIGLPSKNEQLLLQSIPYKAAYLLASRKGSIERKLD FT VMKRINGLPNTSAISILNKYLPPSREISLSHAYESDEVINKIISEKLLEVLRLVSSEVQ FT LSEYNLNLMKQLFDSIAPQVSFEADSKSAQRKSI" FT gene 1751..2680 FT /locus_tag="CPK_ORFA00003" FT CDS 1751..2680 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="CPK_ORFA00003" FT /product="site-specific recombinase, phage integrase FT family" FT /db_xref="GOA:D1A1A6" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/TrEMBL:D1A1A6" FT /protein_id="ACZ33584.1" FT /translation="MSNLNHCHRSRLFLTIAEAANVWLATLSPITSKNYASGIKFLVSN FT GVIDPSMKLEGLISTDHSEALFRIKSLSCSLTGKSISEASKQARAACYISFTKFLYRLT FT KGVVRQASPIRDFGNATFYKIRDKVKTEFISKREWLLFFDSLKKRSYRDYLIGKLILQG FT VRKLSEVISLRTEDISFGNNQIFFKVKKRQNRIREVKVTYPTLLMNELKEYLGKREGWV FT FVSDSLEGHRVCVNQIYYYFKLAESDIQLPIKVTPHVLRASALAYLKKTGFSDVDIMRI FT SCLSSHEMISAYDSYSEENITAQLPFIF" FT gene complement(2756..3823) FT /locus_tag="CPK_ORFA00004" FT CDS complement(2756..3823) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="CPK_ORFA00004" FT /product="site-specific recombinase, phage integrase FT family" FT /db_xref="GOA:D1A1A7" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/TrEMBL:D1A1A7" FT /protein_id="ACZ33585.1" FT /translation="MLYLIMEIIRYNSTFYNIRFLVRKDNSQQHGLHNIFDNPSSNTLT FT HSQATQAKMEYIWNGLRKVTLKEAVNIWISSLNAHTARSYRGSILALNRIGLLSLDISL FT QEFAMINHNVIIDAIKKIPSRIVPWCEGTKQVRAACYISLTKFLNRETSGLISKAKPSQ FT QETNRTFYKVRDLVKTNAMEDTQKWAFLEKLKSINYRDWLIALTILQGAKRANEVLNLN FT TDKISFQDGTISFSQTKNRCLEKTTVITYPQWFMNKLSDYLGQRKGLLFVTKKGKSVGL FT KQIANTFSRAGKLAHIGFKVTPHVLRATAVTEYKRLGCSDSDIMKVTGHSSSKMIYAYD FT KSRRSENASKKIILI" FT gene 3865..5235 FT /gene="dnaB" FT /locus_tag="CPK_ORFA00005" FT CDS 3865..5235 FT /codon_start=1 FT /transl_table=11 FT /gene="dnaB" FT /locus_tag="CPK_ORFA00005" FT /product="replicative DNA helicase" FT /db_xref="GOA:D1A1A8" FT /db_xref="InterPro:IPR007693" FT /db_xref="InterPro:IPR007694" FT /db_xref="InterPro:IPR016136" FT /db_xref="UniProtKB/TrEMBL:D1A1A8" FT /protein_id="ACZ33586.1" FT /translation="MKDSQLEKEYLDIEFVILGQAVNYTESAKDVVSRLTEEHFSAAIH FT KKIFFFIKNLLNDRGTVSIALIWEEIKRQNYDKHLDVSYIVQMSQNADIQINLIHHIDF FT LHEKRTNDLLKEFLDTSYSDFNRYPNRRSPFTLIDQFKERLDSIHNKTIPTRNQFVGRN FT VCEIIKGDKETEGVLSKIRFRHTYRLNNEKDYIDGLSTGYPSIDEHSTLLCKGNFIVIA FT ARPAMGKTAFAIDVALYLAVKEKRSVGFISLEMGSQQIVERIISNLSEVSCENLRRGNF FT SRETLSKVEKISSDLQSSHFFICDKNCSEINALINQATALKHSYGIDILFIDYLQLIEA FT NGRSENRQNEIASISRKLRMLSVDLEIPIVCLSQLSRKVEDRGDKRPLLSDLRDSGQIE FT QDADAILFLYRKDYYSQESTKGLTEVIIGKNRHGSIFSTHLMFNSSFGKFYSQKEAW" FT gene 5229..6266 FT /locus_tag="CPK_ORFA00006" FT CDS 5229..6266 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="CPK_ORFA00006" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D1A1A9" FT /protein_id="ACZ33587.1" FT /translation="MVKTDHHIIKSSLHLESQKFGRKPLSFSDTESKIEVIGLDLQTSH FT YHALAAIQKLLSATNYRGNAEGSYLSRETNTFKFEGIIPRIKFSRSEYLEAYGVKKYKT FT ARNKYEFGGKEALISLEALYHLGNQPYLIVATRKRWNRGEEVVDRYQTFSPILRICEGW FT EGLTPKENKALDEGPFINLVSTKHKGFIIEPCPIIVDQIDSYFVLKPANMYQEIKLRFP FT NASKFTYTFLDWIVSTATRKKMNNPTTKDWPDKLEIGFENLSYTLRMNRYITSRNWKKI FT ETAINRCIEIAIELKWLTKHERIQGKTILKKEVFYLNKTKFQQISTNKTIEKEKESKLI FT IDSEN" FT gene 6304..7107 FT /locus_tag="CPK_ORFA00007" FT CDS 6304..7107 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="CPK_ORFA00007" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR008444" FT /db_xref="UniProtKB/TrEMBL:D1A1B0" FT /protein_id="ACZ33588.1" FT /translation="MGNSGFYLQDTQNTIFADNIRLGQMTTVLKKDEVIIGTDTTPTVT FT KFSGDKGIVVTTDSTTTPSSTTFSLDMEAVIKEVTDKILNQIEDELVKDIIKNITQSLI FT EEVIKQIHIDPSFSYSRAFKDVNITNKIQCNGLFTKENIGNLDGGTEIASFSVTPDNAD FT SMFLICADIIATRMEGTVALALVKEGDTSPCSISYGYSAGYPNIISLRATVENKTTAPV FT KFSLRAGGMDSGVVWVNAMPNGEKILGVDAVSKITILEVKPQTNG" FT gene 7200..7505 FT /locus_tag="CPK_ORFA00008" FT CDS 7200..7505 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="CPK_ORFA00008" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:D1A1B1" FT /protein_id="ACZ33589.1" FT /translation="MNNRQNTNDFIRIVKDVEKAFPELDIKVKIDKEKVTFLTSPTELY FT HKSISVILNLLNSIESSLDLFPDSPVVEELEKNNLKLKKALIMLILSRKDMFSKTE" XX SQ Sequence 7530 BP; 2676 A; 1184 C; 1303 G; 2367 T; 0 other; tatttgtgaa aacaatagca ttttgctcat ttaaaggagg gactggtaaa actaccctgt 60 ctctcaatgt tggttgtaat ttagcccaat atagcaacaa aaaggttttg cttgtggatt 120 tagatccaca agcaaacctt actacaggtc tcggtgtaca atcttgttat gaatctaatt 180 tgaacgacat ttttagaagt tcaggaaacg taagggatat cattcaagat acaaagatag 240 aaaacttaca catagtacct gctaatattc tcatagagga gtttcgagaa tttaatagag 300 atagtgtact gaatacaagt catttgcatt catctttgca acttattgaa tccaattatg 360 atctgtgtat tttagacact ccaccaagtc tgggtacgct aaccgaagaa gcgtttattg 420 catcagatca tttgattgtt tgtcttactc ctgaaccatt ttccatatta ggattacaga 480 aaatcaaaga gttttgttca gtgttaccta aaaagaaaga cttatcagtg ttaggaatag 540 ttttctcttt ttgggatgga aggaattcaa caaattcaac ctacttgaac attatagaat 600 ctatctacga agggaaagtg ttatctagta aagtacgaag agacataaca ttaagcagat 660 ctcttttaaa agaaacttcc atagctaacg cataccctaa ttctagagca agtcatgaca 720 tactgcgtct aacaaaggag atagaagata aattattcaa taaagaaatg tctgcccagg 780 aagtgttgtg agtaagttag tcaaagaagc atccgttttc ttcagcaaaa acaaaaaaaa 840 tacagaagaa gaattccaga agaaagaaat agtcaaggat gtgttttcag tatcacttac 900 tatttctgaa gcaaatcgtt tagatagtct ttttaataaa tataccctca aagatgaaaa 960 gaaagatatt ttcctttcta tcaagaccct tacttgtcag ataaaatcca ttcaaaaaca 1020 gcatgtttta ctgatcggag aaaagatata taaagttaga gagttgctta aaactataga 1080 gtcaaccgaa acaacattct cagcatggat aagtttagta ttctcgacaa aatcgtcagc 1140 gtataatgcc ttagcatact atgaactatt tatcggtctc ccaagcaaga acgaacaact 1200 tttactacaa tctattccat ataaagctgc ttatttgttg gcttctagga aaggatctat 1260 tgaaagaaaa ttagatgtaa tgaaaaggat aaatggatta cccaatacat ctgctatttc 1320 tattttaaac aagtaccttc caccttcgag agaaattagt ttgtcacatg cgtatgaatc 1380 ggatgaggtg attaacaaaa ttatttcgga aaagcttcta gaagtactaa gactggtttc 1440 ttcggaagtc cagttgtctg aatacaacct taacctcatg aagcaactat tcgatagtat 1500 agctcctcaa gtaagcttcg aagctgattc caaatcagcg caaagaaaaa gtatttaaaa 1560 tacttttaaa ataatttaag cctagaaaac tcagagatgt tttgcaactt taggtggtag 1620 accttgcaac tttaggtggt agaccttgca actttaggtg gtagaccttg caactttagg 1680 tggtagactt ttcgatgaaa aacacttaga ctccgcaact cttaatgcga aagtaatact 1740 agggctaagt atgagtaatt taaaccattg tcatagaagt agattgtttt taacgatcgc 1800 tgaagctgca aatgtttggt tagcgacttt atctccaatt actagtaaaa actacgcttc 1860 tgggattaag tttttggttt ctaatggtgt tatcgatcca tcaatgaaat tagaaggttt 1920 aatttctaca gatcattctg aagcattatt tagaattaag tcgttatctt gttctcttac 1980 tggtaagtct atatcagaag cttctaaaca agctagagca gcttgttata tttcttttac 2040 caaattttta tatcgcttaa ccaaaggtgt tgttagacaa gcttctccaa ttagggactt 2100 tggcaacgca acattttata aaatccgaga caaagtaaag acggagttta tttctaaacg 2160 agagtggcta ttgttttttg attctttaaa aaaaagaagc tacagagatt atttgattgg 2220 aaaactcata ttgcagggtg tgagaaagct ttcagaagtt atctctcttc gtactgaaga 2280 tatttcattt ggaaacaatc aaatattttt caaggtgaaa aagagacaaa atagaattcg 2340 agaagtaaaa gttacatatc ctactctttt gatgaatgag ctaaaagaat acttagggaa 2400 aagggaagga tgggttttcg tttcagattc tttagaggga catcgagttt gtgttaatca 2460 gatatattat tattttaagc tagcagaaag cgatatacaa cttcctatta aggttactcc 2520 tcatgtattg cgtgctagtg ctttggcata tttgaaaaaa acaggttttt ctgatgtgga 2580 tattatgagg atttcgtgct tatcttctca tgaaatgatt tcagcatatg attcttatag 2640 tgaggaaaac atcacagccc agctgccttt tatattttga tataatttta attatatttt 2700 aatacaccct tcctaaagat atagattcta tcccaacaaa gttaacactt tgttgttaga 2760 ttagaattat ttttttggaa gcgttttcag agcgtctaga tttatcataa gcgtaaatca 2820 tttttgatga tgaatgaccc gtaactttca ttatgtctga atcagaacag cccaggcgtt 2880 tatattcagt tactgctgta gctctcagaa catgtggagt aactttaaaa ccgatgtgcg 2940 ctaattttcc tgctctagaa aatgtgttgg ctatttgttt taatccaaca gatttacctt 3000 tttttgttac aaacaacagg ccctttcgtt ggcctaaata atcacttaat ttattcataa 3060 accattgagg atatgtaata accgtcgttt tttctaagca cctattttta gtttgagaaa 3120 aagaaatagt tccgtcttga aacgaaatct tatccgtatt tagattaagc acttcattag 3180 ctctctttgc tccctgtaga atcgtcaaag caatcagcca atctcgatag ttaattgatt 3240 ttagtttttc taaaaacgcc catttttgtg tatcttccat ggcattggtt ttaaccaaat 3300 ctcttacttt ataaaatgtt ctgttggttt cttgttggga tggtttagct ttagatataa 3360 gacctgaggt ttctctattg aggaattttg taagtgatat ataacaagct gctcgcactt 3420 gttttgttcc ttcgcaccag gggacgattc tagaagggat tttcttaata gcatctatta 3480 taacattatg gttaatcata gcgaattctt gtaaggatat atctaaagag agaagtccta 3540 ttcgatttag agctaaaata gatcctctat acgatctagc tgtgtgtgca tttaaagacg 3600 aaatccagat attaacagct tcttttagag taacttttct taacccattc catatatatt 3660 ccatttttgc ttgtgttgct tgagaatggg ttagtgtatt cgaagatggg ttgtcgaaaa 3720 tgttgtgtaa cccatgttgt tgtgaattgt ctttacgcac aagaaaccta atgttataaa 3780 acgttgagtt atacctgatt atttccataa tcaggtataa catggtactt ttttaatccc 3840 ccaaacattc ttggtaatac ctgtatgaaa gactctcagt tagagaaaga gtatttagat 3900 attgaattcg taatactggg acaggctgta aattatacag aaagtgctaa agatgttgta 3960 tcacgtttga ctgaagaaca tttctcagct gcgattcata agaaaatatt ttttttcatt 4020 aagaatctat taaacgatcg aggcactgtt tctatagctt tgatttggga agaaataaaa 4080 aggcagaact atgacaaaca tttggatgtg tcttacatcg tacaaatgtc acagaatgct 4140 gatatccaaa taaacttaat tcatcatata gattttcttc atgagaaaag aaccaacgat 4200 ttattaaaag agttcttaga tacttcttac agtgatttta acaggtatcc aaatagaagg 4260 tccccgttta ctttaataga tcaattcaaa gagcgcttag actctattca caacaaaaca 4320 attcctacta gaaatcaatt tgtaggtcgt aatgtttgtg aaattataaa aggagacaaa 4380 gagactgagg gggtcttatc taaaatacgt tttagacata cgtacagatt gaacaatgaa 4440 aaagattaca ttgatggact ttctactggt tatccatcca tagatgaaca tagtactttg 4500 ttatgtaagg gaaacttcat tgtaatagct gcacgacctg ctatgggtaa aacagctttc 4560 gctatagacg tagctttata tttagctgtg aaagagaaaa ggtctgtagg ctttatatca 4620 ttagaaatgg gatctcagca gattgtagag agaattattt caaatttaag tgaagtatct 4680 tgtgaaaatt taagaagagg taatttttcg agagaaactt tatcgaaagt tgaaaaaatt 4740 agttcggatc ttcaatcttc tcattttttc atttgtgata aaaattgttc agaaatcaat 4800 gctttaatca atcaagcaac agcccttaaa cattcctatg gtatagatat tttattcata 4860 gactatttac agctcataga agcaaatgga cgctctgaaa acagacaaaa tgaaatagca 4920 tcaatttcaa gaaaactacg tatgttgtcc gtagatcttg aaataccaat agtttgttta 4980 tcacagttat ctagaaaggt tgaagaccgt ggtgacaaac gtccgttgtt gtcagatctg 5040 agagacagcg gtcaaataga gcaagatgct gatgcaatat tattcttata cagaaaggac 5100 tactattctc aagaatctac aaaaggatta acagaagtaa taataggaaa gaacagacac 5160 ggctctatat tctctactca cctaatgttc aattcttcat ttggaaagtt ctactctcaa 5220 aaagaagcat ggtaaaaact gatcaccata taattaaaag ttctctgcac ttagaaagtc 5280 agaaatttgg cagaaaacca ttatcttttt ctgatacaga atcaaaaata gaagtcatag 5340 gattggactt gcagacatcg cattatcatg ctttagctgc tattcaaaag ctattgtcag 5400 caacaaatta tagaggaaat gctgaagggt cttatctttc cagagaaaca aatacattta 5460 agttcgaagg cataattcca cggataaagt ttagcagatc agaatattta gaagcttacg 5520 gcgttaagaa gtataaaact gcaagaaaca agtatgaatt tggagggaaa gaagctctaa 5580 tttcactaga agctctgtat catttaggaa atcaacccta ccttattgta gcaacaagaa 5640 agcgctggaa cagaggagag gaagtcgtag accgatatca gacattttct ccaatattga 5700 gaatttgtga aggctgggaa ggattaactc cgaaagaaaa taaagcttta gatgaaggac 5760 cttttattaa tctggtgtca accaaacata aaggctttat catagaacca tgccctatca 5820 tagtagatca aattgattcg tattttgttt tgaaaccagc aaatatgtac caggaaatca 5880 aactacgatt tcctaatgca tctaaattca catatacatt tcttgattgg attgttagca 5940 cagcaacaag aaaaaaaatg aataacccaa caaccaaaga ttggccagat aaacttgaaa 6000 ttggattcga aaatctgtct tatactttaa gaatgaatag atatattaca tctagaaatt 6060 ggaaaaaaat tgaaacagct atcaatagat gtatagaaat agccatcgaa ttgaaatggt 6120 taaccaaaca tgaaagaatc caaggtaaaa caatattaaa aaaagaagtg ttttacctaa 6180 acaaaacaaa atttcaacag atatcaacaa acaaaactat agaaaaagaa aaagaatcta 6240 aattaattat tgatagtgaa aattaattta attaaaaact caaaataaaa agagttttta 6300 attatgggca attcaggttt ctatttacaa gatactcaaa acactatttt cgcagataac 6360 attcgtcttg gtcaaatgac cacagttctt aaaaaagacg aggttattat aggcacagat 6420 acaactccaa cagtaacaaa atttagtggc gataagggaa ttgtggttac tacagactca 6480 accacaacac catctagcac tactttttct ttggatatgg aagccgtaat caaagaagta 6540 acagataaaa tcttaaatca aattgaagat gagttagtca aagacattat aaaaaacata 6600 actcaaagtc taatagaaga agtaattaag caaatacaca ttgatccttc tttctcatat 6660 tctagagcat ttaaagatgt taatataact aataaaattc agtgcaatgg tctatttaca 6720 aaagaaaata tagggaattt agacggagga acagaaatag cttcgttctc agtaacacct 6780 gacaatgctg atagtatgtt cttaatttgt gcggatatta tagccacacg catggaagga 6840 acagtggcct tggcgttagt taaagaagga gatacatctc cttgctctat tagttatgga 6900 tactccgctg gatatccaaa tataatttca ctaagagcaa ccgtcgaaaa caaaacaact 6960 gctccagtta aattctcttt gagagcagga gggatggata gtggtgttgt gtgggtaaat 7020 gctatgccaa atggagaaaa aattttagga gttgacgcag tttcgaagat tactatctta 7080 gaagtaaaac cacaaacaaa tggttaatta aaatataagt aatttcccaa tatattttta 7140 ttgttaaatt tctatagggt ttttatataa acaatacagg tctatttact ggagagatta 7200 tgaataacag acaaaacact aatgacttta tcagaattgt gaaggatgtt gaaaaggcgt 7260 ttccagaact agatatcaaa gtaaaaatag ataaagaaaa agttactttt ttgacttctc 7320 caacagagct ttatcacaaa agtatatccg tcatactcaa tttactaaac agcattgaat 7380 catctctaga ccttttccca gactctccag tagttgaaga attagaaaaa aacaatctaa 7440 agctcaaaaa agctctgatc atgctaattc tatcaagaaa agacatgttc tcaaaaacag 7500 aataaaataa catctactct aacgttggag 7530 //