ID CP001462; SV 1; linear; genomic DNA; STD; PRO; 5252 BP. XX AC CP001462; XX PR Project:PRJNA28627; XX DT 06-MAR-2009 (Rel. 100, Created) DT 23-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Borrelia burgdorferi WI91-23 plasmid WI91-23_lp5, complete sequence. XX KW . XX OS Borrelia burgdorferi WI91-23 OC Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia; OC Borrelia burgdorferi group. OG Plasmid WI91-23_lp5 XX RN [1] RP 1-5252 RX PUBMED; 20935092. RA Schutzer S.E., Fraser-Liggett C.M., Casjens S.R., Qiu W.G., Dunn J.J., RA Mongodin E.F., Luft B.J.; RT "Whole-genome sequences of thirteen isolates of Borrelia burgdorferi"; RL J. Bacteriol. 193(4):1018-1020(2011). XX RN [2] RP 1-5252 RA Fraser-Liggett C.M., Mongodin E.F., Casjens B., Dunn J., Luft B., Qiu W., RA Schutzer S., Sebastian Y.; RT ; RL Submitted (12-FEB-2009) to the INSDC. RL J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, RL USA XX CC Linear plasmids are missing a portion of the telomeric-like regions CC at the ends. The chromosome for this strain has been deposited CC under the Whole Genome Shotgun project accession ABJW00000000. The CC DNA or cells for this strains can be obtained from Sherwood Casjens CC (Univ. of Utah, sherwood.casjens@path.utah.edu) or Benjamin J. Luft CC (SUNY at Stony Brook, bluft@notes.cc.sunysb.edu). XX FH Key Location/Qualifiers FH FT source 1..5252 FT /organism="Borrelia burgdorferi WI91-23" FT /plasmid="WI91-23_lp5" FT /strain="WI91-23" FT /mol_type="genomic DNA" FT /db_xref="taxon:498737" FT gene 286..660 FT /locus_tag="BBUWI9123_T0001" FT CDS 286..660 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BBUWI9123_T0001" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR003459" FT /db_xref="UniProtKB/TrEMBL:C0RBI7" FT /protein_id="ACN55797.1" FT /translation="MYKAIKEQQEIEIDHACRILILTATIFEINSIFENYYQKTLLKKY FT NENLKNKNLPPSNISTMKKYLNQLEKEIKIIAKFYFKNDQSLIYCKLNYTLEKICLKLI FT KFYKKFYKELKQFTQKNITT" FT gene 766..1119 FT /locus_tag="BBUWI9123_T0002" FT CDS 766..1119 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BBUWI9123_T0002" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:C0RBI8" FT /protein_id="ACN55799.1" FT /translation="MEKSLKEILGMNSKNKLSSHLIILIYTLNNINLNLNIEYYNRGFI FT RRAFTFNVDRYCNTSKDIEIDIDLLIKYLDILENNLKIIANKYKVEKNIFKLYYIINYP FT LKICYTKIRNYYK" FT gene 1230..1598 FT /locus_tag="BBUWI9123_T0003" FT CDS 1230..1598 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BBUWI9123_T0003" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:C0RBI9" FT /protein_id="ACN55798.1" FT /translation="MNGIINDTLVARITKQIKFAKNKLIILVKTLDHMNQELFYSENKD FT YTHLLIKSKFNLALAKTTQHEVNYKTLLEYLEILEKNPKVILKCPTNKENESFIGRYTL FT LYPLEVCCTKIYNLHPNI" FT gene 2170..3276 FT /locus_tag="BBUWI9123_T0004" FT CDS 2170..3276 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BBUWI9123_T0004" FT /product="hypothetical protein" FT /note="identified by glimmer; putative" FT /db_xref="InterPro:IPR003459" FT /db_xref="UniProtKB/TrEMBL:C0RBJ0" FT /protein_id="ACN55800.1" FT /translation="MNSKTTNKTNRNCYNKVQHKLIVLISTICYLNKTHKKYTQKTILY FT YFNENLRKNGQTISTLRTMQKYIYRLQKEIKVTTNYYQHMGVNSGTEIYYKLNYPKKDC FT YHKINQHFKEKKEERYQNRVANYFNKNSDSKMGSVQLGECNNNNNNIKEERKINEIEKY FT QVIKYFNKCDFSCKEILPVLLTLNIDKENIIKIIKILKITEINSKNKNIRPTKSCIKKK FT QEKLKGILCNTQKELEENGYNSKQLEINFQKIYENYKYKPHFIIENHKYSDLNNIKRKL FT EKSIERKKENSQQDYENLKINVFNILIEQLKKETNIEILKPIIKEYLNNQKKIKYNKIF FT GIYYLELLEIIKNRKHDLNLEKFSKKVV" FT gene 3362..4354 FT /locus_tag="BBUWI9123_T0005" FT CDS 3362..4354 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BBUWI9123_T0005" FT /product="Sua5/YciO/YrdC/YwlC family protein" FT /note="identified by match to protein family HMM PF01300; FT match to protein family HMM PF03481; match to protein FT family HMM TIGR00057" FT /db_xref="InterPro:IPR004388" FT /db_xref="InterPro:IPR005145" FT /db_xref="InterPro:IPR006070" FT /db_xref="InterPro:IPR010923" FT /db_xref="InterPro:IPR017945" FT /db_xref="UniProtKB/TrEMBL:C0RBJ1" FT /protein_id="ACN55801.1" FT /translation="MIKTPIISEYQFKIALKLIKMGEIIVFPTDTVYAIGANIYDEYAV FT RMINLVKKKSINEPLMLYVDTIEKIKELSSHVPKSAKILMEKFSPGPLTYVLKKSIKIP FT KFINNNLDTVAIRIPKNKTALNLIRKLKNPLVVSSANLSKRPSSTSFSMALKELNGLVG FT GIIMPKKNKDSNIGIESTIIEFDSKDNVIILRPGAITKKMIEKVLGSRYKVNYAKETKI FT DLKKMFSYRLRIPVHTFKRGDNIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDS FT LIEYAENLYKELVNAEEKYDQVIVEIVENEELGYAINNRIVKASSNNFM" FT gene 4410..4841 FT /locus_tag="BBUWI9123_T0006" FT CDS 4410..4841 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BBUWI9123_T0006" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:C0RBJ2" FT /protein_id="ACN55796.1" FT /translation="MENIFEYLKLNAVEICVLKDIKKVIYKFYESILDIENDAETINIL FT SPHKSQNILNEFFFNLGPKKSKELINLFRKIKVKLGDNVFENKVFIFYLCLDDVDFFKL FT LYVLDKSNFDDYLILIYEKFLAIRKDLKLILNNYGSNNL" XX SQ Sequence 5252 BP; 2320 A; 634 C; 605 G; 1693 T; 0 other; taatataatt ttttattagt atagagtatt ttgactcaaa actttaccct ttaaattact 60 aaatttaact tgaaaatact aaactttaac ccaaaataat aaaactttaa cttgaatttt 120 tcaaaattac aaaactttaa cccaaaatga taaaacttta attttttgta atttttacat 180 aaaagtgtta actttaaaat cccaaacttt ataattttgg gaaattatca atactttttt 240 aatttattct ttattttcaa aataatcttt atatacttat atattatgta taaggctata 300 aaagaacaac aagaaataga aatagatcat gcatgcagaa tacttattct taccgcaaca 360 atatttgaaa taaattcaat attcgaaaat tattatcaaa aaactctact caaaaagtat 420 aacgaaaatc tcaaaaacaa aaatctacct cctagtaata tatcaacaat gaaaaaatac 480 ttaaatcaat tagaaaaaga aataaaaatc atagcaaaat tctattttaa aaacgatcaa 540 tctctaattt attgcaaact taattatacc ctagaaaaaa tttgtttaaa actaataaaa 600 ttctacaaaa aattctacaa agaattaaaa caatttacac aaaagaacat tactacttaa 660 ttgtaaatac attataaaat aatcttatgc aaatatttag aaatacaaat tgtaaagata 720 tatattttta tttaaataaa taataaaaat tgctggcaca ctaatttgga aaaatcttta 780 aaagaaatac taggtatgaa tagcaaaaat aagctatctt cacacttaat aattcttatt 840 tacacactaa acaatattaa tctaaattta aatattgagt actataatag ggggtttata 900 cgccgtgcgt ttacttttaa cgtagataga tattgcaata ctagtaaaga tattgaaata 960 gacatagact tactaataaa gtatctagat attttagaaa acaatctaaa aatcatagct 1020 aataaatata aagtagaaaa aaatatattc aaactttact acataatcaa ttatccttta 1080 aaaatatgtt acacaaaaat taggaactac tataaataga ctatataatg gtttaacgcc 1140 aaaaaatact gcactatatt tacaatataa tggtttaacg ccaaaaaata ctgcactata 1200 tttacaatat aatagggggc taattcatta tgaatggaat aattaacgat acactggtcg 1260 caagaataac aaagcaaatt aaatttgcta agaataagtt aatcattctt gtcaaaacac 1320 tagatcacat gaatcaagaa ttattctata gtgaaaacaa agattatact catttattaa 1380 taaaaagcaa gtttaatctt gctctagcta aaactactca acacgaagtt aattataaaa 1440 ccctattaga atatcttgaa atattagaaa aaaatccaaa agtaatctta aaatgtccca 1500 caaataaaga aaatgaaagc tttataggcc gttatacact cctttaccct ttagaagttt 1560 gttgcactaa aatttataat cttcatccta atatttaagc taatataatc cagaaaattt 1620 actataatcg attatataaa tagtaaacca atatctatcc tagtatatta tggcctataa 1680 taggcccaat aaagaatatt ttgatctata aatgataaat ccataaagga ctatatgtct 1740 tttatggatt ttgaacatga ataattatta aattaccaat ataaagctaa atacaaaata 1800 aatccaatat atctttaaat tctagaaaat ttttaatcta aaaaaatcat tattatagtg 1860 cccaaaacaa aataaaactt aaactgggaa aattagtgtt acataaaatg aatagggctt 1920 aagacaaatt ctttataaaa aacttgcttt aagccctatt tcacgatcac ttctttgtaa 1980 ttcgaactct cgtcgaacta tttatagtat aacaaaaatt aaaccatagt caagttgtat 2040 tttaaataaa ttttaatctc aattactaaa actttacaat ataactaaaa ttgatataag 2100 agtatttact tttatagcaa ttttagttat attgtaaaat gatcactaca attgtaagga 2160 gaagtctcta tgaattcaaa aacaacaaat aaaaccaata gaaattgcta taataaagtt 2220 caacacaaat taatagttct tatttcaaca atatgctatc taaacaaaac acataagaaa 2280 tatacacaaa aaaccatact ctattacttt aatgaaaatc taagaaaaaa cggtcaaact 2340 atttctacac taagaactat gcaaaagtat atctatagac tacaaaaaga aataaaagtc 2400 acaacaaact actatcaaca tatgggggta aattcgggta cggaaattta ttacaagctt 2460 aattatccta aaaaagattg ttatcataaa ataaaccagc actttaaaga aaaaaaagaa 2520 gaaagatacc aaaatagagt tgccaactat ttcaacaaaa attctgattc aaaaatgggt 2580 agtgtgcaat tgggggagtg taataataat aataataata taaaagaaga aagaaaaatt 2640 aacgaaatag aaaagtatca agtaataaaa tacttcaaca agtgtgactt ttcatgtaaa 2700 gaaattcttc cagttttatt aacattaaat attgataaag aaaacataat taaaataata 2760 aaaatcctaa aaataaccga aattaactca aaaaataaaa atatacgccc tactaaatct 2820 tgtattaaaa aaaaacaaga aaaattaaag ggaattctat gtaacactca aaaagaatta 2880 gaagaaaacg ggtacaattc caaacaatta gaaataaatt ttcaaaaaat atacgaaaat 2940 tacaaatata aaccccattt tattattgaa aatcataaat atagcgattt aaacaacata 3000 aaacgtaaat tggaaaagtc aattgaaaga aaaaaagaaa attctcaaca agattatgaa 3060 aatttaaaga taaacgtttt caatatcctt attgaacaac taaaaaaaga aacaaatatt 3120 gaaattctaa agcctattat aaaagaatat ttgaataacc aaaaaaaaat aaaatacaac 3180 aaaatatttg gcatatatta tcttgaatta ctagaaataa taaaaaatag aaaacatgat 3240 ctaaatttag aaaaatttag taaaaaagtt gtttaggtgc taaaatatga aaagtttatt 3300 tagattagtg cagaaaattg agttcaaaaa tacgaattat tccatagagg ctaaagaata 3360 aatgataaaa acaccaataa ttagtgaata tcaatttaaa atagctttaa aattaatcaa 3420 aatgggtgaa attattgtat ttccaacaga tacggtttac gctatagggg ccaatattta 3480 tgatgaatat gcagtgagaa tgataaattt agtaaaaaaa aaatccatta atgagccctt 3540 aatgctttat gttgatacaa tagagaaaat aaaagaatta tccagccatg ttcctaaaag 3600 tgctaagatt ttaatggaaa agtttagtcc gggcccttta acttatgttc ttaaaaaatc 3660 aataaaaata cctaaattca ttaataataa cttagataca gtggcaataa gaatacccaa 3720 aaataaaacc gcattaaatt taattagaaa attgaaaaac cctcttgtag tatcatcagc 3780 aaatttatcc aaaaggccta gttcaacaag ttttagcatg gctttaaaag aattaaatgg 3840 gcttgtagga gggataataa tgccaaaaaa aaataaagac tctaatattg gcatagagtc 3900 aactattatt gaatttgact cgaaagataa tgtaataata ttaaggcccg gtgcaataac 3960 aaaaaaaatg atagaaaaag tgctaggcag tagatataaa gtaaattatg caaaggaaac 4020 aaaaatagac ttaaaaaaaa tgttttctta taggctaaga atacctgtcc atacatttaa 4080 acgcggggat aacataagaa aatatttaaa aacgaataca aaagtactta tcacaagaga 4140 cacttttaaa ttttattttt ttagtttttt atgggataaa aaaaatatta tattattcga 4200 ttctttaata gaatatgcag aaaatcttta taaagagcta gtaaatgccg aagaaaaata 4260 tgatcaagtt attgttgaaa tagtagaaaa tgaagaacta gggtatgcta taaataatag 4320 aattgtaaag gctagctcaa ataatttcat gtaaattcat taataaattt ttactattct 4380 aataaattgt tatatgtttc ccatatataa tggaaaacat attcgagtac ttaaaattaa 4440 atgccgtcga aatttgtgtt ttaaaagata taaaaaaagt tatttataag ttctatgagt 4500 cgattttaga tatagaaaat gatgcggaga caataaatat attgtctccg cataaaagtc 4560 aaaacatttt aaatgaattt ttttttaatt tggggccaaa aaagtctaaa gaattaatca 4620 acctttttcg taaaattaaa gtaaagctgg gtgataatgt gtttgaaaat aaggttttca 4680 tattctattt atgtcttgat gatgtagatt tttttaaact tttgtatgtg cttgataaaa 4740 gcaattttga tgattatcta atattgattt atgaaaaatt tcttgctata agaaaagatt 4800 tgaaattaat attgaacaat tatggttcga ataacttgta atttaaagta aatgtattag 4860 cccctttttg gggctaataa catattctgt atttgtaatt taggattgtt gcaataatat 4920 tatctattat tgtaatatac aagattcacg ttttgtatgt tgcagtaaag gggcagtttt 4980 tgtatggatt tttgtgtaga aaaattttca ttaatttttg gttgctcttc tactactcta 5040 gaagagtttt cctccttttt attgaatttc tgactttatt tttgcactta tgatataaag 5100 aactgtcctt tgtatatgat ttagaataca atatagcatt atgcctttta atttaaagag 5160 cgttatttgt tcctaaaaaa gaaaagaatt tcaagtgcag ctaataaaat aggagccaat 5220 aatggctcta cagctttata ctaaaaaaaa ct 5252 //