ID CP001000; SV 1; linear; genomic DNA; STD; PRO; 6131 BP. XX AC CP001000; XX PR Project:PRJNA18233; XX DT 17-SEP-2008 (Rel. 97, Created) DT 17-SEP-2008 (Rel. 97, Last updated, Version 1) XX DE Borrelia recurrentis A1 plasmid pl6, complete sequence. XX KW . XX OS Borrelia recurrentis A1 OC Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia. OG Plasmid pl6 XX RN [1] RP 1-6131 RX DOI; 10.1371/journal.pgen.1000185. RX PUBMED; 18787695. RA Lescot M., Audic S., Robert C., Nguyen T.T., Blanc G., Cutler S.J., RA Wincker P., Couloux A., Claverie J.M., Raoult D., Drancourt M.; RT "The genome of Borrelia recurrentis, the agent of deadly louse-borne RT relapsing fever, is a degraded subset of tick-borne Borrelia duttonii"; RL PloS Genet. 4(9):e1000185-e1000185(2008). XX RN [2] RP 1-6131 RA Audic S.; RT ; RL Submitted (17-MAR-2008) to the INSDC. RL Institut de Biologie structurale et Microbiologie (IBSM), CNRS-Information RL Genomique et structurale, CNRS - UPR2589, Parc Scientifique de Luminy - 163 RL Avenue de Luminy - Case 934 FR-13288, Marseille cedex 09, France XX DR GR; CP001000_GR. XX CC DNA/Bacteria source is available for Michel Drancourt, Unite de CC Recherche sur les Maladies Infectieuses et Tropicales Emergentes, CC Faculte de Medecine, Marseille, France: CC michel.drancourt@medecine.univ-mrs.fr CC Plasmid sequence lacks part of the telomeres. XX FH Key Location/Qualifiers FH FT source 1..6131 FT /organism="Borrelia recurrentis A1" FT /plasmid="pl6" FT /strain="A1" FT /mol_type="genomic DNA" FT /db_xref="taxon:412418" FT gene complement(166..681) FT /gene="pf49" FT /locus_tag="BRE_7001" FT CDS complement(166..681) FT /codon_start=1 FT /transl_table=11 FT /gene="pf49" FT /locus_tag="BRE_7001" FT /product="PF49 plasmid partition protein" FT /db_xref="InterPro:IPR002596" FT /db_xref="UniProtKB/TrEMBL:B5RSB7" FT /protein_id="ACH95253.1" FT /translation="MKLDILNTIKSRVGSVTQVEDSSDKERAMLRYRQLKEEIRARTLE FT EAVNKVELSKALYEIKKNKLYKFDGYDNFYEFCLDYKFSRTMIYRYVKIGAYLERESIS FT EQDIMQSSLNKIINDIRVKRDSSYCKPVVVKFNLKDKEKQLVLIKNKQKLEKFLLKCLL FT DNWESFIV" FT gene complement(744..1505) FT /gene="pf32" FT /locus_tag="BRE_7002" FT CDS complement(744..1505) FT /codon_start=1 FT /transl_table=11 FT /gene="pf32" FT /locus_tag="BRE_7002" FT /product="PF32 plasmid partition protein" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:B5RSB8" FT /protein_id="ACH95254.1" FT /translation="MRDIIAISSIKGGVGKSITAIMLGYIFSSKKYRTLLIDIDSQASV FT TSYFLPYFENKIDIREYNIYEVLKSKKSFMSIVHKITDDLHFAPSHIKLSQFSGENIIG FT QEYKLKTILTPYFEEYDYILIDTPPSVNKELINSLMIATKVVIPLPAELWAIESYEILK FT SKMQEIINAYQKQDFKNYYVIQTLYEENRKIKKEFFYSLQQLYKEYVPIKIHRSAAIQK FT MITYRLEPQKDERYYNEYLRVAEVIEGVYNM" FT gene 2242..2766 FT /locus_tag="BRE_7003" FT CDS 2242..2766 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BRE_7003" FT /product="uncharacterized conserved protein" FT /db_xref="InterPro:IPR003459" FT /db_xref="UniProtKB/TrEMBL:B5RSB9" FT /protein_id="ACH95255.1" FT /translation="MKNLNFFLYNNSNLKKNQVRLIKLISVLKYLNKNRLGYNQQDILN FT LINFFLKKEGYAVIKMKTLQKDLGFMKKHHIIKAFIIRLGEYRGSKIKYIPKKNAYRIL FT GQVLDATEELLEKTFNIIYKLSKEEKEKNKNELKNSTKNSSVYNTIYNNINNIKKKMKI FT KQQKQQSNKKT" FT gene complement(4417..4773) FT /pseudo FT /locus_tag="BRE_7004" FT /note="pseudogene; uncharacterized conserved protein; FT fragment" XX SQ Sequence 6131 BP; 2150 A; 1195 C; 701 G; 2082 T; 3 other; ccccaattca atttcatatt cattctctca tttaatgttt tcatttatta ttaaactacc 60 aacatcaact attaactgac tatactgata cccaatataa aattatatat caacttactt 120 tatttaatat attattatat atatagaatt tccattctat atatactaca ctataaacga 180 ttcccaatta tccaacaaac atttaagtaa gaatttttca agtttttgtt tattctttat 240 aagaactaat tgcttctctt tatcttttaa attaaattta acaacaacag gtttgcaata 300 tgaagaatct ctcttaactc ttatgtcatt aataatttta tttaaagaac tttgcataat 360 atcttgctcg cttatgctct ctctttccaa ataggcccct atcttgacat atctatatat 420 catagttcta ctaaatttat aatccaaaca aaactcataa aaattatcat atccatcaaa 480 cttgtataac ttattttttt ttatttcgta taaagcttta gacaattcca ctttattaac 540 agcttcctct aaggttcgag ccctaatctc ctccttaagt tgtctatatc tcaacatagc 600 cctttcttta tcagaactat cttcaacctg agtgacactt cctaccctac ttttaatagt 660 attaagtata tctaatttca tttctgtttc ctaaacataa atatttgtaa actggtttac 720 aaatatttat gttttataaa tatttacata ttatagacac cttcaataac ttcagcaact 780 cttaaatatt cattataata cctttcatct ttctgaggtt ccaatctgta agtaatcatt 840 ttttgaatag cagcacttct atgaatctta attggaacat attctttata aagctgctgt 900 aaactataaa aaaattcttt ttttattttt ctattttctt cataaagagt ctgaataaca 960 taataatttt taaaatcctg tttttgataa gcattaataa tttcctgcat tttacttttc 1020 aaaatttcat aactctcaat tgcccaaagt tctgcgggca aaggaataac aaccttagta 1080 gcaatcatca aagaattaat aagctcttta ttaaccgacg gaggggtatc aatcaatata 1140 taatcatatt cttcaaaata aggtgttaaa atcgttttca atttatattc ttgtccaata 1200 atattttctc ccgaaaattg agaaagttta atatgagatg gcgcaaaatg caaatcatct 1260 gttattttgt gaacaatact cataaaagat tttttagatt ttaatacttc ataaatatta 1320 tattctctta tatcaatttt gttttcaaaa taaggaagga aataagaagt aacgctagcc 1380 tgagagtcaa tatctataag caaggttcta tattttttag aagagaaaat ataacctagc 1440 attattgctg ttatactttt accaacgcca cccttaattg aagatatagc tataatatcc 1500 ctcattattt tatacctcta gagtccaaac acttaaatct tttatcataa aaaagtttat 1560 ctaaattatc ttcagaaact aagagctctt cagacaacga atttacaact ccgatgtcct 1620 ttgccttaat tgcgatatta agttttttaa ttttattttt tattgtaaaa taagaaatat 1680 tattaatatt agccaaaaaa agaggagtat aatatttttt accttcatat tcaataaaaa 1740 aatttttcaa atgcattttc attttttctg tcaaaattta ttaccctctt agaattattt 1800 ttttaattta cttttaataa aattttgggc ctcttcactc aaaagcaatt ctcttttttt 1860 aaaaaataaa tctttagaag aaattatacc ttctatttta ttttttttta tatatcttga 1920 caaataagaa gaatcactat aacccatttc ttttgaaaat tctttcaaat tttttaaaga 1980 atttaaaaaa tttaatgtaa tacgcacaaa tttccatcct cctaaataaa ttttcaccaa 2040 tcatcaaata taccaaataa atacaactta actaatatac tttattatat accatgacca 2100 tcattttgta aacgaaattg acaaaataac cattttagta tataaattat attagagttg 2160 actttgtttt ttaatcaaaa tcagagataa aaaagacctg aaaacaaagg tcttaaacaa 2220 actgaaataa aggataaatc gatgaaaaat ttaaatttct ttttatataa taacagcaac 2280 ctcaagaaaa atcaagttag actaattaag ctaatttctg tactaaaata tttaaataaa 2340 aacagattgg gctataacca acaagacata cttaatttaa ttaacttttt cctaaaaaaa 2400 gaaggttatg ctgtaatcaa aatgaaaaca ctacaaaagg acttgggctt tatgaaaaag 2460 catcatataa tcaaagcatt tattatacga cttggagaat atcgagggtc aaaaataaaa 2520 tatataccta aaaaaaatgc atatcgaata ttaggacaag tacttgatgc aacagaagaa 2580 ttattagaaa aaacatttaa cattatatat aaattaagca aagaagaaaa agaaaaaaac 2640 aaaaacgaat taaaaaatag cacaaaaaat agtagtgtat ataatactat atataataat 2700 ataaataata ttaagaaaaa gatgaaaata aaacaacaaa aacaacaatc taacaagaaa 2760 acgtaaaaaa aatagcaaaa aaacgataaa aaaatgaaaa aaataaataa aaaaagtggc 2820 aaaccaagaa aaccatatca aaaaaagaga attttttgag aaaaaagaaa ttagaacgca 2880 aacaaaaggc acacaacagt aattttatta caaacagcaa gcatttttaa aattgattaa 2940 aataaaaaat tttaaaaaaa ttttacgaaa aaatttaagt ttaaagatcg taattacttt 3000 aggaaagaat agtaaccaaa cgcccggcca gaagtcttta ttttgctcca caataaaaga 3060 aatttttaaa aactttataa taacatcccc atacaactat gcccttaaat tgcaaaataa 3120 agggtataaa tattttatga ttatgggaaa tgataaacgt attgtgtaaa caaaggaagc 3180 tatttcttag gttcataact aaacataaaa aatagcatta tgttcaacaa gattttttaa 3240 atattttata gggagaatgt ttctaatcga agttgcttca gggaaaagct tatacacaaa 3300 ggaaagaact tatctcctat caatccaaac tcaactatcc aaactaccga ataaatagca 3360 ttatacagca atgcaaactt ttttccagta ttaatttttc agagaatcaa acctaaacta 3420 atgagcttta aggcttagga attaatgcaa atgaggacat gtatgaaata taaaaaatta 3480 acgaaataac atattgcaaa ccataaaaca aaaatataaa aaagaaaacc ccttggggaa 3540 ggggattatt taaaagaatg tatggtatga agtaaatatt gataataaat tcttttaatt 3600 ttaaaaaagg agaatattta ataactaatt attagttcaa aaaaacaatc atttcaattt 3660 ttttttgcaa tatttctaat attttttcat tctatgttaa tgattctatg ttaatgattt 3720 tgaagatttt gaattttatt gttatcaaat acaatttgat aacaataaaa caagagatat 3780 aacaagggaa tatcttaaaa agattaagat atatttatct catagtaata gagaaaagaa 3840 agtccctact cctatgtctt gttttggaga ggattgatag gagtgttggg gactgttgat 3900 agaatgcttt ctaccgtatt tatatctgtt tataacatta ttttattttt ttaattttgt 3960 aaatattttt aaataatttt attatataaa aacaagactt caaatttctg taatgtgacc 4020 taaaaaataa agcaaaaaag tataaaggag ttatcaattg ttaatattaa agaattgtaa 4080 ggaaaataat taacaattat gtatttatag taaataaagt tataattatt tttttatatt 4140 aaatgaatga tcgaaatttt ttattgctct caagagtttt atgtatccca attggatagg 4200 gggaattttt cttttctgat ttttaaagtg taattttcgg tttatttttt tattcaattc 4260 ttgcatttct tgaatttcta agatgcttgg ttcataatcg atccattttt tatcaatcca 4320 tcctttttcc cattcataat aactttcgtt atagctagtg ccattagatt catcaaaatg 4380 tcttgacaga gcagatatta tcttagcact gtactaaagc attttgtctg tttctgtact 4440 agatataaat tcatcataat cgtaagtttt acctgtctgc atattaacaa tatcaacaat 4500 caacttaaag gtatttatgc aattaagagc gatattacca aaaggaagat ccggattact 4560 tagacatgta atattaacct tatatttatt tttcaaactt ttaggtattt taaagaagtc 4620 aacaataaat ccattgactt tggatttata atttgcctca tattgagaat tttcaaaaaa 4680 gatttcttga agaccttttg ttatatgttt atcatgattt aacatcatag gtagcttact 4740 tttttgaaca ttattttgtt taatattttc catctcatat cctcagaaat caaaaattct 4800 ttcttttatc ttgatatcat acattattat aatacatatt aaataagaat gaatataaat 4860 agctaatatt ttctaatatt tttggtaaat ttttaataaa aaaattaagt atttatttta 4920 tggcaccatt atctttccag ttgacattgt ttttttacta atttgtgata aatttaattt 4980 atctttaacc tttaaccatt tataagaagc tttgagcgag caattctctc aaggcttctt 5040 attgctatta ttatttccta ttacccttat ttattaaata ataaaaattc gttgactcat 5100 tgtaagttag ccttttactt tgatatatcc aaaattatat ttttagtaaa aatctagata 5160 tagaacttta gaggcataaa gtttattttt taatcaaaaa taataaataa ttatttaata 5220 ataaataaac ttttatctta tatattctta acatattatt taataaataa gggtaatagg 5280 aaatcctcct cgccgtccgc cgccgtgcgc gccttgcccg ctccccgctc cttactcctg 5340 gttcccggct cccgcctccc ttccctcctc cccccttccg tccccccccc tgtcccctgc 5400 gccgttcccg gcgccctcnc ntctctcctt ngtttttttg ttggcccttt gccgggcgtg 5460 ttcgcccccc tccgctcttt ctccccctcc ttatttacca tcgcttctaa tccctgcctg 5520 cctccccccg aacaaccgcc cgactcttct cgattcccgc gaggcctctc gacgacggca 5580 aaactatgta accccaaaca ctcccggttt caaaaaaacc gtcaccgccc ccccctacgg 5640 cacgccctac acctccatgg cctccaaacc ctcctcacac ccaaaccggg tccctctgcc 5700 gcggcacccc ctcccttctc ttcccggcgc cgcccctccc ctccaccctc ctccggcggc 5760 gccccccgct tttcatccgc acgacccccc ccccgggccc cccacggggg cgcccgccat 5820 gtgggctgcg gccccttccc cctcccccca gctccccccc ccaacaccgg ctgtccgccc 5880 ccaccccccc ctcccccccc ggggccccac ccctccccac cctgcgccct cccggctccc 5940 cccccggggc accccccccc ccctctgcgc gccacacccc cgcccccccc aacttcgccc 6000 ccaaaccccc ccgcctccag gccgggcctc ggccggcccc cccggctcaa tcacggccgg 6060 acggggctac cccccctccc cggcttcgcg ccgcgcccct ccccccccgg ccccgcgccc 6120 cggcccgggt c 6131 //