ID CP000696; SV 1; circular; genomic DNA; STD; PRO; 4909 BP. XX AC CP000696; AAOO01000000-AAOO01000076; XX PR Project:PRJNA15753; XX DT 12-MAY-2007 (Rel. 91, Created) DT 12-MAY-2007 (Rel. 91, Last updated, Version 1) XX DE Acidiphilium cryptum JF-5 plasmid pACRY08, complete sequence. XX KW . XX OS Acidiphilium cryptum JF-5 OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; OC Acetobacteraceae; Acidiphilium. OG Plasmid pACRY08 XX RN [1] RP 1-4909 RG US DOE Joint Genome Institute RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., RA Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., RA Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.; RT "Complete sequence of plasmid8 pACRY08 of Acidiphilium cryptum JF-5"; RL Unpublished. XX RN [2] RP 1-4909 RG US DOE Joint Genome Institute RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., RA Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., RA Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.; RT ; RL Submitted (04-MAY-2007) to the INSDC. RL US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA RL 94598-1698, USA XX DR GR; CP000696_GR. XX CC URL -- http://www.jgi.doe.gov CC JGI Project ID: 4000181 CC Source DNA and bacteria available from Timothy Magnuson CC (magntimo@isu.edu) CC Contacts: Timothy Magnuson (magntimo@isu.edu) CC Paul Richardson (microbes@cuba.jgi-psf.org) CC Quality assurance done by JGI-Stanford CC Annotation done by JGI-ORNL and JGI-PGF CC Finishing done by JGI-LANL CC Finished microbial genomes have been curated to close all gaps with CC greater than 98% coverage of at least two independent clones. Each CC base pair has a minimum q (quality) value of 30 and the total error CC rate is less than one per 50000. CC The JGI and collaborators endorse the principles for the CC distribution and use of large scale sequencing data adopted by the CC larger genome sequencing community and urge users of this data to CC follow them. It is our intention to publish the work of this CC project in a timely fashion and we welcome collaborative CC interaction on the project and analysis. CC (http://www.genome.gov/page.cfm?pageID=10506376). XX FH Key Location/Qualifiers FH FT source 1..4909 FT /organism="Acidiphilium cryptum JF-5" FT /plasmid="pACRY08" FT /strain="JF-5" FT /mol_type="genomic DNA" FT /db_xref="taxon:349163" FT gene 1120..1605 FT /locus_tag="Acry_3633" FT CDS 1120..1605 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Acry_3633" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:A5FUE3" FT /protein_id="ABQ29225.1" FT /translation="MWGMLASMSKHSMASLRERRAALGLVQMNLWIREEDRAAFTAAVA FT PFKQRAGELDPAQRPGRKRQEFARASSRPVARQKPPEAPQRPAERRSAPRPAIALPCRL FT IFPTRPPARLRNAMKEDGWFYDKLTGTWTADEAEPVELWIDELVRDWGGRIIAPAGG" FT gene 1770..2378 FT /locus_tag="Acry_3634" FT CDS 1770..2378 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Acry_3634" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:A5FUE4" FT /protein_id="ABQ29226.1" FT /translation="MRRCGAHSMDCAITLVAGRFSASRETMNEIDPKRQERNKRYRTGL FT EERGIKAFQVVAPETAKGLFRRAAELMTRDNDPMEPRQAMRLVGGANEPELGDSAPALI FT AELDEARKRIAEIERQAEARRAITAQAAERHRQMLEAERDAARAAEAAEREKVQAIAME FT ALQAQERVGRAETVILQVKTLPGIKGRLVRWLAGDVLPD" FT gene complement(2704..3048) FT /pseudo FT /locus_tag="Acry_3635" FT gene complement(3385..3825) FT /locus_tag="Acry_3636" FT CDS complement(3385..3825) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Acry_3636" FT /product="protein of unknown function DUF29" FT /note="PFAM: protein of unknown function DUF29" FT /db_xref="InterPro:IPR002636" FT /db_xref="UniProtKB/TrEMBL:A5FUE5" FT /protein_id="ABQ29227.1" FT /translation="MSTSTLYDRDFYAWANEQAGLLRAGKLTQADIEHIAEEIESMGKT FT EKRELISRLAVLLTHLLKWQYQPVRRGASWEVTIRIQRRDLARHLRDNPSLQAKLDEAI FT SDAYGDAILAAYGETAIPKQTFPTTCPWSFDQMMAEDFWPEA" FT gene complement(3839..4234) FT /locus_tag="Acry_3637" FT CDS complement(3839..4234) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Acry_3637" FT /product="hypothetical protein" FT /db_xref="GOA:A5FUE6" FT /db_xref="InterPro:IPR007889" FT /db_xref="UniProtKB/TrEMBL:A5FUE6" FT /protein_id="ABQ29228.1" FT /translation="MLSQRRAAQAWGISRATLQRAVSSGKISVLPDGTIDPAEMLRAFG FT EAKGGPPGHHNEPLGPPLGRGDEMAFQAEIRVLKAQIEAKEALLSAKDRHIEDLSQALR FT LLAGPPAPAPQPSLLARLFSRQKPPRS" FT gene complement(4247..4822) FT /locus_tag="Acry_3638" FT CDS complement(4247..4822) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Acry_3638" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:A5FUE7" FT /protein_id="ABQ29229.1" FT /translation="MSKVPPKTVGLATAPSGTWVQTERAAHERWAKLIGSHPKAAALMH FT VIVGNMGRHNALVASVPNLQRMMGCSRNTALRAINVLKEQNWIEVRQLGGVGTTNAYIV FT NDRVAWTGSRDGIRYSLFSAAVLVSDDEQPDKAEIGAQPPLERVPALYPGDRQLPTGNG FT LDPPTQPPLVGLEPDLPAQVKEPHGPHD" XX SQ Sequence 4909 BP; 1013 A; 1378 C; 1503 G; 1015 T; 0 other; tgacaaaaaa cgtccaaacc cgtcccatca gctatgggac taccccgtcc catcagctat 60 gggactaccc ccccctataa aatattgatt taattcatta tttttttcac tccttctatg 120 atctagagga gcacccccga agggggctgc ctgccgtgca ggtagtccac ggggatgcgt 180 agcggagcgc cccgatagga ggctggcgac gcgcagccat tccggtgggc ccacctgtgc 240 ggactggctg atcaggcggc cctcggggcc gatgattgaa ggagcggaaa gccgctgacg 300 cggcttaatc atgaacggcg gccctgaagg gccgcgcggg accagggcga gggaccggcg 360 cgggcgcgct gcgccctccg ggtctcccgc gctgcgctcg acccgcgcca cgaggtgaga 420 gacggcgacg cgggaagcaa aggcggcatt gggggcgatg cggcgaggat ggccgtaaaa 480 tcccgtcaga cgggcgtaca caggtttttg gggttttctg ctcccctttc agcgtccgat 540 ccgcaaggcc gctctacggc ctcctgaggg gctggaatgg gcattccgga ttagtagccg 600 cgtgggatga ccagcctgat atgccccttg gtggttaccc aaccgccgtg ctggtcactg 660 ctggcctcga agcagagatg accgccgcag gtctgccact tcacccgcgc acccttggcc 720 ttgagtgcct tgaggttggc ccgttcggtc tggatctcgg cccgcagggc ctctgcacgt 780 caatagaaca cagcacaacc acagcagagt cacaccataa agtccgccat aatcacggca 840 gatacgatgc aaaaacacaa catgtccgct gcatatctgc gccagaaacc ccgccaaacc 900 cccgccacta tgcgggcgga aagttcagga gagaagtcac agaccattgc acctttggag 960 cctccggaca tgaaagcgca ttgacccgcc ccggtgcggt cctcgcggcc cggaatggca 1020 gcaatcctga gcgcgtctgt ccctctgccc tgaccttcgc tggggcaccg aactgcaccc 1080 cttggggtgc aatcgcggca ctagtgtcgt tgtcggaaaa tgtggggtat gctcgcgagc 1140 atgagcaagc actcgatggc ctcgttacgg gagcgccggg cggcgcttgg cctggttcag 1200 atgaatctct ggatcaggga agaggaccgc gcggcgttca ccgcggcggt tgcgccgttc 1260 aagcagcggg ccggggagct ggacccggcg cagcggcccg gcaggaaacg ccaggagttc 1320 gccagagcgt cgtcccggcc ggtggcacgg cagaagccgc cagaggctcc ccagaggccc 1380 gcagaaaggc gatcggcacc cagaccggcg attgccctgc cctgtcggct gatcttcccc 1440 accaggccgc ccgcccgcct ccgcaatgcg atgaaggagg atgggtggtt ctacgacaaa 1500 ctcaccggca cctggaccgc tgatgaggct gaaccggtcg aactctggat cgatgaattg 1560 gttcgcgatt ggggcggtcg gatcatcgca ccggcaggcg gataatttcc ccggcatcct 1620 cgtggcaaga actagtgctt aattaccaaa gggcgcactt acgagttgct gcgcaactca 1680 gtgtgctgga ggtacagaca aggcagggcg gttaatccgg gcaagcggct ttcgccgcag 1740 aaagcgcgtg agacggccat tagcgtcttg tgagacggtg tggtgcgcac tctatggatt 1800 gtgccataac tctggttgcg gggcggttca gtgcgtcgcg tgagacgatg aacgagatcg 1860 atccaaaacg ccaggagcgg aacaagcggt atcgtacggg gcttgaggag cgcggtatca 1920 aggcgtttca ggtggtggcc ccagagacgg ctaaggggct gtttcggcga gcagcggaac 1980 tgatgacccg cgacaatgac ccaatggagc cacgtcaagc catgcgtctg gttggcgggg 2040 caaatgagcc ggaattgggt gatagtgcac cagcattgat cgctgagctg gacgaggcac 2100 ggaagcggat tgctgagatc gagcgtcagg cggaggcgag aagggctatc acggcgcagg 2160 ctgccgaacg gcataggcag atgttggagg ccgagcggga tgcagcgagg gcagcagagg 2220 ccgcagagcg tgagaaggta caggcgatcg ccatggaggc tctgcaagcc caagagcgag 2280 taggtcgagc cgaaactgtc atcctgcagg ttaagacctt gccgggaatc aagggccgtc 2340 tggtgcgctg gctggcagga gacgtactgc cggattagct gtccggaatc gaccgtattc 2400 ggacaggtaa ttttaccatg cccataaatt aggcttctag agttatggac aatcaaatac 2460 tattgaacat ggttttaatc tcgggattct ggacggttca atcatcggtg tgagccgaac 2520 ctgagttacg gcctcgacga cgaaacgaaa agatatttga tcagagcggc gattatcaaa 2580 acaatcaacg tcatgatggc aataccgaac agcgccatac ctcccatcat ccagccgccc 2640 atcataccat gcatcatcgg gttgctccgt gtttcagtca gccttgccca tcatcccgcg 2700 catcattgcc ggcatcccat ccttcgcaaa gcgatcgagc tcccgtgcat gggcatagat 2760 cacctttacc atttccggat cgtccgaagt ttcggtgacc tgaatcccgg taggtaagag 2820 tttataagat cgtttatact tcgtgctgtt ggcaaacatg gccggtacac tgttgctcat 2880 cgggtaggga aatggtcgat tctcagcgag gcgattatac atttcgatca cgtgcgcctg 2940 gatgaggtga gcggttgttg gattactcga aacagtggtg tcaattatgc cgttgggcat 3000 gtagtccgta gcgcgcgtga tctccgtatg tcgctcgaat agtttcatgc cgagcttcat 3060 cggccccatc atgttgctgc gggacatcat gccctgcatg tccatgtggg acatatttga 3120 tcccatcatt ccgcccatca ttccgccaga tgaacccgta gtatctgcgg actgtgcagc 3180 ggcgcatcgt ggtccaagac cgagaagggc gagaaagccg gaaaatgtgc tgccaaggat 3240 agcggagagg gtacgacgct tcatgaggtt tcacatctct cgattgattg ggatggcaaa 3300 acaagtctaa accttaccat catggcagtg taaagaaagc gtcagaatct cgaattatgg 3360 aaaacgtgga cactacgcgt ccttttaggc ttccggccag aagtcttcgg ccatcatttg 3420 gtcgaaggac caggggcagg tggtggggaa ggtttgctta ggtatagccg tttcaccgta 3480 tgccgcgagg attgcatcgc cataggcatc gctgatggct tcgtcgagct tggcttggag 3540 gcttgggttg tcacgtagat gacgggcaag atcacggcgc tgaatgcgga tagtcacttc 3600 ccatgacgct ccacggcgga caggctgata ttgccatttc aagagatgcg tgaggagtac 3660 tgcgaggcgg ctgatcagtt cccgcttctc ggtcttgccc atgctctcga tctcctcggc 3720 gatgtgttca atgtcggcct gcgtcagctt cccagcgcgc agaagtccgg cctgttcatt 3780 cgcccaggcg tagaaatcgc ggtcatagag ggtcgatgtg ctcatggtat taattctatc 3840 acgaacgggg cggcttctgg cgggaaaata gcctggccag cagagacggc tgtggtgccg 3900 gcgctggcgg gccagcgagc agccggagcg cctggctcaa atcctcgatg tgccgatcct 3960 tcgcggagag cagagcctcc ttggcttcga tctgcgcttt gagcacccgg atttcggcct 4020 gaaaagccat ctcatccccc cggcccaggg gtggcccaag tggctcattg tggtggcccg 4080 gtgggccacc cttggcttcg ccaaaggcgc gaagcatctc tgccggatca atcgttccat 4140 ccggcaaaac actaattttt ccgctggata cggcccgctg tagggtggct ctggatatcc 4200 cccaggcttg ggcggctcgc ctctggctca gcatggccca agtggctcaa tcatgtggcc 4260 catgtggctc tttcacttgg gccggtaggt ctggctctaa cccgaccagc ggaggctgcg 4320 tcggcggatc gaggccgttt ccagtcggca attggcggtc tcccggatac aaagcaggaa 4380 cccgctctag gggcggctgt gcaccaattt cggccttgtc tggctgttcg tcgtcggaaa 4440 ccagtaccgc cgcactgaac aggctgtagc gtatgccatc gcggctccca gtccatgcca 4500 cgcgatcatt cacgatgtag gcgtttgttg ttccgacacc gcctagctga cggacctcaa 4560 tccaattttg ttccttcagc acgttgatcg cacggagagc ggtattccga gagcaaccca 4620 tcatccgctg aaggttaggg acgctggcta ccaaggcatt gtgacgtccc atgttgccta 4680 cgatgacgtg catgagtgcc gcagccttgg ggtgggagcc gatgagtttt gcccatcgct 4740 catgtgctgc cctttcggtt tgcacccatg ttccgctcgg cgctgtagcg agaccgacgg 4800 tttttggggg aactttcgac atgggactac cccgtctcac tcatgaacaa tgattgtcag 4860 tacgtagaca atcaatgtct attttagcgg acatttaatg tcaatgaac 4909 //