ID CP000695; SV 1; circular; genomic DNA; STD; PRO; 5629 BP. XX AC CP000695; AAOO01000000-AAOO01000076; XX PR Project:PRJNA15753; XX DT 12-MAY-2007 (Rel. 91, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Acidiphilium cryptum JF-5 plasmid pACRY07, complete sequence. XX KW . XX OS Acidiphilium cryptum JF-5 OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; OC Acetobacteraceae; Acidiphilium. OG Plasmid pACRY07 XX RN [1] RP 1-5629 RG US DOE Joint Genome Institute RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., RA Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., RA Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.; RT "Complete sequence of plasmid7 pACRY07 of Acidiphilium cryptum JF-5"; RL Unpublished. XX RN [2] RP 1-5629 RG US DOE Joint Genome Institute RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., RA Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., RA Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.; RT ; RL Submitted (04-MAY-2007) to the INSDC. RL US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA RL 94598-1698, USA XX DR GR; CP000695_GR. XX CC URL -- http://www.jgi.doe.gov CC JGI Project ID: 4000181 CC Source DNA and bacteria available from Timothy Magnuson CC (magntimo@isu.edu) CC Contacts: Timothy Magnuson (magntimo@isu.edu) CC Paul Richardson (microbes@cuba.jgi-psf.org) CC Quality assurance done by JGI-Stanford CC Annotation done by JGI-ORNL and JGI-PGF CC Finishing done by JGI-LANL CC Finished microbial genomes have been curated to close all gaps with CC greater than 98% coverage of at least two independent clones. Each CC base pair has a minimum q (quality) value of 30 and the total error CC rate is less than one per 50000. CC The JGI and collaborators endorse the principles for the CC distribution and use of large scale sequencing data adopted by the CC larger genome sequencing community and urge users of this data to CC follow them. It is our intention to publish the work of this CC project in a timely fashion and we welcome collaborative CC interaction on the project and analysis. CC (http://www.genome.gov/page.cfm?pageID=10506376). XX FH Key Location/Qualifiers FH FT source 1..5629 FT /organism="Acidiphilium cryptum JF-5" FT /plasmid="pACRY07" FT /strain="JF-5" FT /mol_type="genomic DNA" FT /db_xref="taxon:349163" FT gene complement(897..1094) FT /locus_tag="Acry_3628" FT CDS complement(897..1094) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Acry_3628" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR019270" FT /db_xref="UniProtKB/TrEMBL:A5FUD8" FT /protein_id="ABQ29220.1" FT /translation="MITTSYDPEADALYVRFAPKGATIAETRELEPGILLDMDEIGHLV FT GIEVLGVRSRATLPAIPYAA" FT gene complement(2806..3369) FT /locus_tag="Acry_3629" FT CDS complement(2806..3369) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Acry_3629" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:A5FUD9" FT /protein_id="ABQ29221.1" FT /translation="MATGNPIVDALDALAAEVAKCTESVKAANPDALTRSVDQAATKAV FT SSIKTALDGASEAVKEIQKAASDTAQAASSAVEQVAEVRTATRWLNLRSVAVLALAVVL FT VVSGSLASIWWERHKFHRLHTKVIALRAEVQTERANLKALKAKGARVKWETCGGHLCFE FT ASSDQHSGWVTTKGNIKLVIPRGY" FT gene complement(3371..4456) FT /locus_tag="Acry_3630" FT CDS complement(3371..4456) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Acry_3630" FT /product="plasmid mobilization system relaxase" FT /note="PFAM: MobA/MobL protein" FT /db_xref="GOA:A5FUE0" FT /db_xref="InterPro:IPR005053" FT /db_xref="UniProtKB/TrEMBL:A5FUE0" FT /protein_id="ABQ29222.1" FT /translation="MAIYRCEIKNISRGQGRSCVAAAAYRHRTRLHDQRQELDHAYTHK FT GDVELSEIVAPEAAPEWVHDRERLWNAADAAEKRKDARTAKEVLVALPRELNTAEQASL FT VREFARAEFASKGLVADIAIHAPKAQDGETQPHAHIMLTTRPLENGNFAKGKDYSLDKP FT PGIEAIRERWATHCNRALERVRSPERVDHRSLADQRQAALAAAENPAQPEPDRIRAAAR FT AMELDRAPEPKIGPVAMQMARQGRGTRAYALRDAMQVRQDRGMLRTMSRSWEQVRQAGS FT NLMQTMRERLPGLASVLRQALPLPSALIAATTSPDMQRATQMLDMRAAEKILKTREHEN FT QQRQQQRTPDQGRERGRGIEM" FT gene 4650..4973 FT /locus_tag="Acry_3631" FT CDS 4650..4973 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Acry_3631" FT /product="relaxasome subunit MobC" FT /db_xref="UniProtKB/TrEMBL:A5FUE1" FT /protein_id="ABQ29223.1" FT /translation="MAKRTDDEILADLTAKQREIETRINAVKARSKERARKEETRRKVL FT VGAVILAEAERSEAAKQRLQALLDKHLVRPIDREVFGLPPRPDQSGQAATSSDSTARPD FT DAD" FT gene 5065..5613 FT /locus_tag="Acry_3632" FT CDS 5065..5613 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Acry_3632" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:A5FUE2" FT /protein_id="ABQ29224.1" FT /translation="MAKNSRDGNRERAARRRAALAERGIRPIQVLAPDAAHPLIRQAAA FT LMTRDDAPLEPRAALRRAGGANEPEPGEASPGLAAELEAAKARITEIERQAEAQRVMAD FT DAAERQRRALEVEQEKARASAEEAQKAARSAQVAEGRAAEALRRAEKAEATIRQAKALP FT GLKGRLVRLLAGEVLKWPD" XX SQ Sequence 5629 BP; 1140 A; 1514 C; 1723 G; 1252 T; 0 other; taatagggtt ccaattcttc agctttttgc tgatgctcca agttaaggcg aagtgtgatc 60 gaccaaggtt cggtcatatg gtcgtaggcg aggattccta cgggtttcgc ggaaaagcca 120 tccgccatcg aaattttttt ctggaggtca acatgcatca gcatgtttta aatccagcga 180 tggtgcgtag tttggctgaa ttgatatacg caatcgctgt attgttgaaa gccgtatggc 240 caaaagggtt taattaacaa taacttctgg gtcatgaaac aattttatca tggcccagtt 300 tttttattga tattagatat ttctattggc aattcgattt ctaggtctga attataatgg 360 aaagagggga atttataatt tttgctaaat tttattatat cattgtcaat aatttttgat 420 ccgctacttt tgtatatttt tactttttcg gcatgaccga gattgtttat ttctaatgaa 480 ataattggtg atatcttttt aatatgatat ttttcaaaat catttataat atctgattta 540 taaatagact tcttaaatga tgacatccaa attttttcgt aacttaaagc ggaattttta 600 ttccaaactt tatgccgacc gatcgacata atattatatc ctacaaatat aacaataata 660 gaaaacataa taataattgc cgtataccaa agcactggat aaagataata aaataaaata 720 gataaagcta aagccggaat ccatcctatt ataattccta ttaaaaatcc aaataaatgt 780 atagataata cgtatgttga aatgaatatt aaaattgaaa ttataaatag taataaatct 840 aacatcatat tattcgaaaa gagattttct tgaaaaatct atgatgccga atattttcat 900 gccgcatatg gaattgccgg tagtgttgcc cgtgatcgca cacccagcac ttcgatcccg 960 actaggtgtc cgatctcgtc catatccagc aggatgccag gctccagttc cctggtctcg 1020 gcaatcgtcg ctcccttagg ggcgaaccgg acatagagcg catccgcctc gggatcatag 1080 ctggtcgtga tcacggtctg gctcctcgat caaaactctc tacgatcctg tgcgccgtgc 1140 cagatgcgaa ggacttcagc gttctggccg acaattcgat aaacgataat gtagggccaa 1200 atcacggtca gttccctcgt ccctgaaacc aagccgggcc gcccacgctc aggtagatac 1260 tcaagccgat cacaggccgc tacgagctgc accgcgatgc gagtggctgc ggcagggttt 1320 tcccggccga tgtggtggcg aatatggaca agatcattga tagcctcagc cgtgaagatt 1380 accggcattt aggttcggac agctcgtttt cagttcccca ggaaagcagc catttccgag 1440 cttcctcgta gggtacggtg cgcccggagt ccgcagccgc aatccctttt ttgacggctt 1500 caacgaaagc ttccgtatca ggatcatctg gcatggatac agggttcggg atcattcagc 1560 ggactcctct tggtggaggt gagtactacg cgctggcaag tcatgttcta gtccatcaaa 1620 tggtggttga gatggcggag gctcgccatt accagacggg agttggcgtt cacctggtag 1680 caatgttgga atttgcctta gaggatcttg gctgatctct tcctgttcgt cggaacgagc 1740 caaaacttcg gctgagaacc tagcgtagcg gagcttgtcg cgctcttgcg tccaagcaac 1800 tcggctattg atgactatgg cattggcggc acctttgccg cctatctgaa taacctcaat 1860 ccaacgttcg ctacggagat cagcgattgc ccgacgaacg gttgcgaccg acatcccgct 1920 aatcgaggct agggtcgccc acgacgccac cacagcatca ctatgaccca tttgagcaac 1980 gagatagtgc atcaatgcgg ctgctcgagg tttgctgacg gaaagccgcc cccaagcttc 2040 atgggaagct cgatcggtct gaatccatct tggaggggag ttggcgttct gagtgagcaa 2100 ccccctgctc atatgtgcac cattcgtttg cactggagta ttcatatgaa tcactcgtga 2160 tcgatacggg tgattcatat atgatcacat ctgatccata caaatcaacc ctgctcacct 2220 aagtgagcag ggggctgctc acttaggtga gcagcccccc ctttgtaaca tattgattta 2280 attggaaatt ttttcgcccc ctctctatga tcttaggact ggggctcccc ctcatttttg 2340 tcgtcccggt agtccacagg gaacgagggc cgcgagccgc ccgaagggag gcgaagcgag 2400 cggcccgaac ttccctgtgg gcccaccggg gcgacgggca ctacgcacgc gcgagcgcgc 2460 gaggctgcga agttgggaag ggggtgcggg ggaaaccaga tgcggcaaat cgcgatgcga 2520 tttgaccatg aaaggcggcc ctgacgggcc gcgctagggg aaggtaaggg ctggcgcggg 2580 cgcgatgcgc cctccgggtc tcccgctctg cgctcgaccc gcgccacgag gtcaggggca 2640 acgggacggt aagcaaaagc ggcattggag acgaagcggc gaggatggcc gtgaaacccc 2700 gtcagacggg cgtacacggg ttttttgggt ttggtgctgt tttggggtgt caggacataa 2760 aacccgttct acggccttct gccgggccgg aatgcccatt ccggatcaat agccgcgtgg 2820 aatgaccagc ttgatattcc ccttggtggt tacccaaccg ctgtgctggt cactgctggc 2880 ctcgaagcag agatgaccgc cgcaggtctc ccacttcacc cgcgcgccct tggccttgag 2940 tgccttgagg ttggcccgtt cggtctggac ctcggcccgc agggcaatga ccttggtatg 3000 gaggcggtgg aatttgtgtc gttcccacca gatcgaggcg agactgccgc tcaccaccag 3060 cacaacggcc agcgccagga cggcgactga gcgcagattg agccagcgtg tcgcggtgcg 3120 gacctcggca acctgctcga cggcgctgga cgctgcctga gcggtgtccg aggcggcctt 3180 ctggatctcc ttcacggcct cgctggcgcc gtccagagcg gtcttgatgc tgctcacggc 3240 cttggtggcg gcctgatcga cggagcgggt gagggcgtcc ggattggcgg ccttcacgga 3300 ctcggtgcat ttggcgacct cggcggcgag ggcatccaga gcgtctacga tggggttgcc 3360 ggttgccatg ctacatctcg atcccccggc cgcgttcccg gccctggtcc ggtgtgcgtt 3420 gctgctggcg ttgctggttc tcgtgctcgc gggttttgag gattttctcg gcggctcgca 3480 tgtccagcat ctgggtggcg cgttgcatgt ccgggctggt ggttgcggcg atcagggcgg 3540 agggcagggg cagagcctgt ctgagcacgc tggcgaggcc ggggaggcgt tcgcgcatgg 3600 tctgcatgag gtttgagccg gcctggcgga cctgttccca ggagcggctc atggtgcgga 3660 gcatgccgcg atcctgcctg acctgcatgg cgtcccggag ggcgtaagcc cgcgtgccgc 3720 gtccctggcg tgccatctgc atggcgacgg ggccgatctt gggttccggg gcgcggtcca 3780 gttccatggc tctggcggct gccctgatgc ggtcgggttc gggctgggcg gggttctcag 3840 cggctgcgag ggcggcctgg cgctgatcgg cgagggagcg gtgatcgacc cgttcggggc 3900 ttctgacgcg ctcgagcgcc cgattgcagt gggtagccca ccgttcgcgg atggcctcga 3960 tgccgggtgg cttgtcgagg ctgtagtcct tgcccttggc gaagttgccg ttctcgaggg 4020 ggcgggtggt gagcatgatg tgggcgtgag gctgtgtctc gccgtcctga gccttggggg 4080 cgtggatggc gatatcggca accagcccct tgctggcgaa ctcagcgcgg gcgaactcgc 4140 ggaccaggct ggcctgttcg gcggtgttca gttcgcgtgg gagggcaacc agcacttcct 4200 tggcggtgcg ggcatccttg cgcttctcgg cggcatcggc ggcattccac aggcgttcgc 4260 ggtcgtggac ccattcgggt gcggcctctg gtgcgacgat ctcggagagt tcgacgtcgc 4320 ccttgtgggt gtaggcatgg tcgagttcct gacgctggtc gtgcaggcgg gtacgatgcc 4380 gataggcggc agcggcgacg caggatcgac cctgaccccg gctgatattc ttgatctcgc 4440 aacggtagat tgccacagat cggcctcgac gaatgaggaa atcaggttaa gctattttgg 4500 cggtttgaac aaccacgaaa ggattgagtg cgcggttacg tgttgctgcg caacacccgc 4560 ggcaatcctg ggggcgttgc ccccgccctg cgggcgcccc ccaccaatgg gcttgcgcgc 4620 cccttggaac cccgactagt ttttgtgtca tggcaaagcg gacggacgac gaaatccttg 4680 ctgatctcac cgcgaagcag cgtgagatcg agacgcggat caatgcggtg aaggcgcgct 4740 cgaaagaacg cgcccgcaag gaggagaccc gccgcaaggt gctggttggc gcggtcatcc 4800 ttgcggaagc ggagcggtct gaggccgcga agcaacggct ccaagccctg ctcgacaagc 4860 atcttgtacg ccctatcgat cgcgaggtgt tcgggctacc gccccggcca gaccagtctg 4920 gccaggcggc tacgtccagc gactcaacag cccgccctga cgatgccgac tgagtctcaa 4980 tcggccctga accatagccg gctcaaacca tgacatgtca tggtttgagc gtgacatgtc 5040 atggttgcct tgccatgata tgtcatggct aagaatagca gggacgggaa tcgagagcgc 5100 gccgcccggc gccgggcggc tctcgccgag cgtggtatca ggcccattca ggtgctggca 5160 ccggacgcgg ctcatccttt gatccgtcag gctgcggccc tcatgacccg cgacgatgcc 5220 cccctggaac cacgggcggc gctgcgtcgg gctggcgggg cgaatgagcc tgagcccggt 5280 gaggcatcgc ccggcctggc tgcggaactg gaagctgcca aagccaggat cacggaaatc 5340 gagcgtcagg cagaggcgca gagggtcatg gcggacgacg ccgcagagcg tcagaggcgg 5400 gcgctagagg ttgagcagga gaaggcgcgc gcgagcgcag aggaggccca gaaggccgcc 5460 agatccgccc aggtagccga agggcgggcg gcagaggcgc tacggcgcgc ggagaaggcg 5520 gaagccacca tacggcaggc caaggctcta ccgggcctca aaggccggct tgtgcgcctt 5580 ctggccggcg aggtgctgaa gtggcctgat tgacggcctc caccatcga 5629 //