ID CP000406; SV 1; linear; genomic DNA; STD; PRO; 6847 BP. XX AC CP000406; XX PR Project:PRJNA17057; XX DT 01-AUG-2006 (Rel. 88, Created) DT 25-MAR-2009 (Rel. 100, Last updated, Version 3) XX DE Borrelia afzelii PKo plasmid lp31 fragment c, complete sequence. XX KW . XX OS Borrelia afzelii PKo OC Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia; OC Borrelia burgdorferi group. OG Plasmid lp31 XX RN [1] RC Publication Status: Online-Only RP 1-6847 RX DOI; 10.1186/1471-2164-7-211. RX PUBMED; 16914037. RA Glockner G., Schulte-Spechtel U., Schilhabel M., Felder M., Suhnel J., RA Wilske B., Platzer M.; RT "Comparative genome analysis: selection pressure on the Borrelia vls RT cassettes is essential for infectivity"; RL BMC Genomics 7:211-211(2006). XX RN [2] RP 1-6847 RA Gloeckner G., Schulte-Spechtel U., Schilhabel M.B., Felder M., Suehnel J., RA Wilske B., Platzer M.; RT ; RL Submitted (08-JUN-2006) to the INSDC. RL Genome Analysis, Fritz Lipmann Institute, Beutenbergstr. 11, Jena 07745, RL Germany XX DR GR; CP000406_GR. XX FH Key Location/Qualifiers FH FT source 1..6847 FT /organism="Borrelia afzelii PKo" FT /plasmid="lp31" FT /strain="PKo" FT /mol_type="genomic DNA" FT /clone="fragment c" FT /note="low passage strain" FT /db_xref="taxon:390236" FT gene complement(<1..176) FT /locus_tag="BAPKO_6050" FT CDS complement(<1..176) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BAPKO_6050" FT /product="hypothetical protein" FT /db_xref="GOA:Q0SKV9" FT /db_xref="InterPro:IPR007694" FT /db_xref="UniProtKB/TrEMBL:Q0SKV9" FT /protein_id="ABH02519.1" FT /translation="MATLRESGVLEQDADIVIFLHQDDEKCKENTGTLIDNLVEVKVLV FT DKNRNGPTGTVTM" FT gene complement(224..637) FT /locus_tag="BAPKO_6051" FT CDS complement(224..637) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BAPKO_6051" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR003900" FT /db_xref="UniProtKB/TrEMBL:Q0SKV8" FT /protein_id="ABH02520.1" FT /translation="MSKRYYHNELTYRDLENLEKQFGIKIDNLVSKIDSVEKNLNTKID FT GIKNEFNAKIDGLNIKIENLNTKINSVEKNLKRDMYNLAQDLKKDIQINSKLLLEKLKV FT SNRIIILITVLVVPIAISSMANIVMSIIGSYLK" FT gene complement(980..1057) FT /locus_tag="BAPKO_6052" FT CDS complement(980..1057) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BAPKO_6052" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q0SKV7" FT /protein_id="ABH02521.1" FT /translation="MGSLEQDANIVIFLHQENSGIKGEI" FT gene complement(1550..1825) FT /locus_tag="BAPKO_6053" FT CDS complement(1550..1825) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BAPKO_6053" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q0SKV6" FT /protein_id="ABH02522.1" FT /translation="MDKKTNIITIPNLKRGLDKVPLFDINNKIQRIKILYEIKQKELYK FT YDDFAHFGDFIEFFEVAKSKAYTYLKIYEKVLDSKVSIDKNKESGF" FT gene 2601..3212 FT /locus_tag="BAPKO_6054" FT CDS 2601..3212 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BAPKO_6054" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q0SKV5" FT /protein_id="ABH02523.1" FT /translation="MKKYIINLILCLLFSSCNLFSNDSRSSQKYNFKVKAKSVLNSTDK FT NNIDTKKGTNTTLCIKEENSRIVVKDCINNQELFKVKSKRRYDFKKAMLLGIKTALKVI FT NIGNNKLSSIKKYNDHILLEFKDNKIYIIQLSELKKHLLKNKKKPLLGSPVPGGGEAEF FT IDDPYGIIEGELQAEREEEMLDREEFGDEEDEELEEEIGE" FT gene complement(3650..3769) FT /locus_tag="BAPKO_6055" FT CDS complement(3650..3769) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BAPKO_6055" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR004180" FT /db_xref="UniProtKB/TrEMBL:Q0SKV4" FT /protein_id="ABH02524.1" FT /translation="MEKKVYEFYNKKLKDEGVINKWIKKKPIIITLASLKGGG" FT gene complement(4212..4385) FT /locus_tag="BAPKO_6056" FT CDS complement(4212..4385) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BAPKO_6056" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR003459" FT /db_xref="UniProtKB/TrEMBL:Q0SKV3" FT /protein_id="ABH02525.1" FT /translation="MRKTAPYKTDFYTLAGKFKDTYTTKWKVNKITSFSGHAGIIANNI FT LANILTKGLKFE" FT gene 5138..5422 FT /locus_tag="BAPKO_6057" FT CDS 5138..5422 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BAPKO_6057" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q0SKV2" FT /protein_id="ABH02526.1" FT /translation="MRMIEGYSFYKVSEAQEILKNKFDYKITKSHLRYKLEVFECYIRI FT GNIMMIPEDFLKYLTLSLVLFKKNEKYKIEIKKEIKEKMPKFRELIKKG" FT gene 5481..5621 FT /locus_tag="BAPKO_6058" FT CDS 5481..5621 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BAPKO_6058" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q0SKV1" FT /protein_id="ABH02527.1" FT /translation="MCTEVKFLTNIGFIIATFLFKFLFPLTYNDETNNSEETDNLLVET FT L" FT gene complement(6005..6628) FT /locus_tag="BAPKO_6059" FT CDS complement(6005..6628) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BAPKO_6059" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q0SKV0" FT /protein_id="ABH02528.1" FT /translation="MKKKIFFGLLLVCIFLVFFLFVKKENNIIYNKIIEKSEDRVFIDE FT TYTYLFKDGNLKELVFIKSEIMSPEIDEYKKNINLTGYLIDSYRALYPGYKFDFTVHDN FT KIIGFKSVIFEGLEDAQVSRHENNLPSEKWQQLKDYNIGDPNINEKFFNLKFPFVVKNT FT LRVTLSKRFFKKIKKLKRLKIVLITNEDREYKINIENFLPKYNL" XX SQ Sequence 6847 BP; 2497 A; 901 C; 683 G; 2766 T; 0 other; tccatagtta cagtaccagt aggtccattt ctatttttat caactaacac ttttacttca 60 actaaattat caattaaagt accggtattt tctttacatt tttcatcgtc ttgatgtaaa 120 aaaatcacaa tgtcagcatc ctgttctaat acacccgact cccttaaagt tgccaaacta 180 ggctctctac cctctgttat gggtaaaaaa ttccttgtga tttctatttg agatagctgc 240 caattatcga cataacaata tttgccatac tagatatagc aataggaact actaatactg 300 taataagaat tattatcctg ttacttacct tgagtttttc caataataat ttgctattaa 360 tttgaatatc tttttttaga tcttgtgcca aattatacat atctcgtttt aaattctttt 420 ctacgctatt aatcttagta tttagatttt ctatcttaat atttaaacca tctattttag 480 cattaaattc gttttttata ccatctatct tggtatttaa attcttttct acactatcaa 540 tcttagaaac aagattatca atctttattc caaattgttt ttctaaattt tctaaatctc 600 tatatgtaag ctcattgtga taatatcttt ttgacaaatc ttgtgctatt agttactcca 660 ttcccagccg caagaattct ttatagattt attcttcagt aacatttgtt attgtcaaca 720 ctgatttcat aatttattta cctgctaagc acattgtaac ataaattaag gccaaattaa 780 cagcacattt tcaaaattga cgaaggcaag agactcaaac tcaaaatttt tagaaatttt 840 acaaaaaagt aaataatgtt caaatacttt tttgcattac tttctatctc taaacctacc 900 aaacttaggt gtaaagtcta tagttgcaat actaatagcg ccccacattt atttttagca 960 acgataactt ttattttagc taaatctccc cctttattcc actattttct tgatgtaaaa 1020 aaattacaat attagcatcc tgctctaatg aacccaattc tcctaaagtc gataaaccag 1080 aatccctacc ctcatagttt ctggcaactt gcgacagaac tattattgaa atttcaaact 1140 caaaaaagca agtgcacgta tattgcggct caaaaatgca acttgctcat aacaaggagt 1200 attattatgc aatgtagtaa ttaagctaat atagccaatg acaataatat caatattaca 1260 atttcttttc atttgcctag cttcgtcctt taacaaagaa taacaaagaa tgctccacct 1320 ataattttta tgaaattata ggtggagcat tctttgttaa aatctccttt ttttatttat 1380 aaattctttc aataataaag tacaatctta tagaatcttg tttacaaaaa tcatataatt 1440 ctttatattt tactaaaatt ccaataggaa tactttcgtt gatatcttta ggtgcactat 1500 aaatatcttc gtttaagaat ttttaccttc tatatctttt aatatcctct taaaatccac 1560 tttctttatt tttatcaatg gatactttac tatctaaaac cttttcataa atttttaaat 1620 atgtataagc tttgcttttt gcaacttcaa aaaattctat aaaatcgcca aaatgagcaa 1680 aatcatcata tttatacaat tctttttgtt taatttcata caaaatttta attctttgaa 1740 ttttattatt aatatcaaat aatggcactt tgtccaaacc tcttttaaga ttcgggattg 1800 ttataatatt tgttttttta tccatttata tatcactcct gctttttttt actttttatt 1860 gtaaaaaagt cttttctaat ttattcaagc catattttat tcttagaaat ttattatctt 1920 cttttaagga gaagaaatta attaaataat aattattttt attattaagt ttttgaaaag 1980 ttggacttaa tttactttct ttatgataat tcctaaattt tatcaaatgt ttaaaatttt 2040 tttataatat atttttttat tatctatttc ttcaattcta gtaaaagcag ttattttttt 2100 gcttatttat atttacatta tattttaatt cttttttatt tattgttttt ttttcttttt 2160 aatttcttgt ttattagaat tttttaaaaa atatatttaa cagctcttat tctatatatt 2220 attataattg gttatacata tagtgacatt tcagctttaa gattgccctt ttatttttac 2280 tttcctctat aaaagcatgc tttatgctac taaaacaaac atagatcagc ttatacaata 2340 ggtgatacct tatctacaca tagcattcct ttacattaca cctaaaaatg gatcaataaa 2400 aaattgtttt gtttaggatt tgcttttaat accatcctta taagtttgta tttttacact 2460 tacatctttt attgcttcta taaaaatttt atttttaaaa agatatttat taattataat 2520 gttaatatta ttagaaaata attaataaaa aatttaatat atacttttaa atgaagtatt 2580 tttaaattaa ggagtataaa ttgaaaaaat atattattaa tttaatttta tgtttattat 2640 tttcttcatg taatcttttt tcaaatgatt cccgatcaag ccaaaaatac aattttaaag 2700 taaaggccaa atcagttttg aattccactg ataaaaacaa tatagatact aaaaagggga 2760 ctaatactac actttgtata aaagaagaaa atagtaggat tgtagttaaa gattgtatta 2820 ataatcaaga gctttttaaa gtaaaatcta aaagaagata tgattttaaa aaagctatgc 2880 tcctcggcat taaaacagct ttaaaagtta tcaatattgg caataataaa ttaagttcta 2940 taaaaaaata taatgatcat attttattgg aatttaaaga taataagata tatataattc 3000 aattatctga acttaaaaaa catttgctaa aaaacaagaa aaaaccatta ttagggagcc 3060 cggtgccggg aggaggagag gcagaattta tagatgaccc ttatggtata atagaaggag 3120 aattacaagc agaaagagaa gaggagatgc tagacagaga agaatttgga gacgaagaag 3180 acgaagaatt agaagaagaa ataggtgaat aacaatctaa tgattgagaa ataagatata 3240 ttgattaaat atttagtaat tctagctagc agcctaacaa taattataaa cttattgtta 3300 ggcttattga attgacctgg attagaaaaa attataagaa gatttatatt attttataat 3360 aagaaaaatt cctatgtgat ttatacatta aagcattctt taaaaggaaa tttctactag 3420 aagaagtatc tattataaaa aaatcgaaat atattcatta attttatttt cacatttatc 3480 aaaataggta tttcctttta aaaattcata aacattgtgt tttttaatat tagaaatata 3540 ttaattaaaa taagaagtta aagaattttg tggatccaaa acaattaata gtactttttt 3600 gcctaattct tttaatatat aagaaaaaat tatagaaagt gagcttttct cacccccccc 3660 cctttaaact tgctagtgta attataattg gttttttttt gatccattta ttgataaccc 3720 cctcatcttt taatttttta ttataaaatt catatacttt tttttccatt tttttcaagt 3780 gtgataaatt aaattgataa tactcggtgt tttctttatt ctttcttaga agtgttctta 3840 aagattgaac atatgcttta atagagccct ttttaaaggc aaattctata taatagagtt 3900 tttttattgc ataggtttta ttattttctt ttttaagaaa aagggtttat cgagtttatc 3960 atgcctatat cttatttcta agaacttatc atattctttt aaagaaaaga gattaaaaaa 4020 aataaaatct tcagcgttat taaatttttg aaaagtaagc cttagccttt ctcctttgtt 4080 tgtaattcta aaaccaatta aatgtttaaa tattttggtg tagtatattc ttctactatt 4140 tacttcttca attctgttaa atataatttt tttctatgtt attttttttg tttctgagtt 4200 tttaaagtaa attactcaaa ttttaatccc tttgtcaaaa tgttagctaa aatgttatta 4260 gctattatgc cagcatgtcc tgaaaagcta gttattttat ttactttcca tttagtagta 4320 taagtatctt taaattttcc tgcaagagta tagaaatcgg ttttataagg tgcagttttt 4380 ctcataaagt gaattttgtg tttgtagagg tttagtttag ataagaaaaa ttctttaata 4440 tcttttactt cataatcata ttttagataa tttttaaaat ctttatagtt taataaggta 4500 ttttttagtg ttttaattgg ttctttagta ttagaaatta ttgatttaat tcttttaaag 4560 aaagagtttt ctatagaatt cttattatat atatttatat attgttttag gaactataac 4620 ttctattaat agtacattat ctcgtatatt ttcattttta gcactaggca tatgttcaat 4680 tttaattaat tttataagtg ctataaataa atataatatg ctcttcttgt aacttgttct 4740 acaaaatcat atacttctct attacttatt aaaattctaa taaaaatatc attattattt 4800 aatttactta tattgtaatt taaataaaag taaaacaaat ttataattat tagcaaagca 4860 tctaccaaat aaataaggca aacttttatt tatgtaaaaa ttactaaata atggtataac 4920 gatttacaat tatttaaatt aaatttttta aagtcttttt aaaagattag gcaccatttt 4980 ttaatggtgc ctaatccaaa taactaactt ccccaaaatg gagagaaatg gagaagctgt 5040 gaaaaacata gaatttatac cttataatat acaccatata aatatatatg tcctattttg 5100 gagttttttt attatgaatt aaatctatat ttattttatg agaatgatag aaggatattc 5160 attttacaaa gtttctgaag ctcaagaaat tcttaaaaat aaatttgatt ataaaatcac 5220 aaaaagccac ttaagatata aactagaggt ttttgaatgt tatattagaa taggaaatat 5280 aatgatgatt ccagaagatt tcttgaaata tttaacactt agcttagtct tgtttaaaaa 5340 aaacgaaaaa tataagatag aaataaaaaa agaaattaaa gaaaaaatgc ctaaatttag 5400 agaattaata aaaaaaggat aaatatattt ataaaaatac tctatctcct aatattaaaa 5460 acaaaaaact tctcccttat atgtgtacag aagtaaaatt tttaacaaac attggcttta 5520 ttattgcaac ttttcttttt aaatttttat tccctttaac ctacaatgat gaaacaaata 5580 attccgaaga aacagataat ttattagtag aaaccttata attttttacg ctaacatttt 5640 gaaccctagc ttgcttttac ctagatgaaa aaactttcct ttattaccta taggaatcca 5700 atttagtaat taattataag aaaatttgaa tcataatcta ccacccattg ctgatgttgt 5760 caaaatttat ttcctgccgt taacatataa aatatttttt taggaatttt tcttttaaat 5820 tatattcacc caaatcagat accatttacc cttcatgcca aaaaatatca tcttgaataa 5880 tggaattaaa aatgtttcta attttttaaa attatcaata ttacaactca gcaacaatat 5940 aattttataa aaaagtttca atattaatta gaaacatact atttttcaaa aatttcagtt 6000 caaattaaag attatatttt ggtaaaaaat tttctatatt tattttatat tctctgtctt 6060 cattagtaat taaaacaatt tttaatcgtt ttaatttttt gattttctta aaaaaccttt 6120 tagatagagt aacacgcaag gtatttttta ctacaaaagg aaattttaaa ttgaaaaatt 6180 tttcatttat atttggatct ccaatgttat aatcttttaa ttgttgccat ttctcacttg 6240 gcaaattatt ttcatgccta gaaacttgag catcttccaa tccttcaaaa atcacacttt 6300 taaagcctat aattttattg tcatgcactg tgaaatcaaa cttataacca ggatataacg 6360 ctctataaga atctatcaaa taacctgtta gatttatatt ctttttatac tcatcaatct 6420 caggactcat aatctctgat tttataaaaa ccaattcttt taagttgcca tctttaaaaa 6480 gatatgtata agtctcatca ataaagactc tatcttcaga cttttcaata attttattat 6540 aaataatatt attttctttt tttacaaaca aaaagaaaac taaaaaaata caaactaata 6600 ataacccaaa aaatattttc tttttcatta aaaatctatc ctacttatga aaaatcatat 6660 caaacgcact ataaaaatac atactatttt ctttacttac tttgaaagaa tatttttttt 6720 tctcattatt tatttcatct ctaccatctt attttatata tttttatata gtgttatata 6780 atttttataa tttttatttc atttcaccgt cagtaaatag gctcatatca aaattaaaat 6840 aattaag 6847 //