ID CP000281; SV 1; linear; genomic DNA; STD; PRO; 2625 BP. XX AC CP000281; XX PR Project:PRJNA29637; XX DT 04-JUN-2006 (Rel. 88, Created) DT 25-MAR-2009 (Rel. 100, Last updated, Version 2) XX DE Borrelia hermsii DAH plasmid fragment 983, complete sequence. XX KW . XX OS Borrelia hermsii DAH OC Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia. OG Plasmid unnamed XX RN [1] RC Erratum:[Mol Microbiol. 2006 Aug;61(3):838] RP 1-2625 RX DOI; 10.1111/j.1365-2958.2006.05177.x. RX PUBMED; 16796672. RA Dai Q., Restrepo B.I., Porcella S.F., Raffel S.J., Schwan T.G., RA Barbour A.G.; RT "Antigenic variation by Borrelia hermsii occurs through recombination RT between extragenic repetitive elements on linear plasmids"; RL Mol. Microbiol. 60(6):1329-1343(2006). XX RN [2] RP 1-2625 RA Dai Q., Restrepo B.I., Porcella S.F., Raffel S.J., Schwan T.G., RA Barbour A.G.; RT ; RL Submitted (02-MAR-2006) to the INSDC. RL Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, RL National Institutes of Allergy and Infectious Disease, National Institutes RL of Health, 903 S. 4th Street, Hamilton, MT 59840, USA XX FH Key Location/Qualifiers FH FT source 1..2625 FT /organism="Borrelia hermsii DAH" FT /plasmid="unnamed" FT /strain="DAH" FT /mol_type="genomic DNA" FT /clone="fragment 983" FT /db_xref="taxon:314723" FT gene 363..581 FT /pseudo FT /gene="vlpC" FT /locus_tag="BH_P00361" FT gene 721..1782 FT /locus_tag="BH_P00362" FT CDS 721..1782 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BH_P00362" FT /product="VlpD17D" FT /db_xref="GOA:Q1CNU7" FT /db_xref="InterPro:IPR000680" FT /db_xref="UniProtKB/TrEMBL:Q1CNU7" FT /protein_id="ABF82214.1" FT /translation="MRKRISAIIMTLFMVLVSCNSGGVAEDPKTVYLTSIANLGKGFLD FT VFVTFGDMVTGAFGIKADTKKSDIGKYFTDIESTMTSVKKKLQDEVAKNGNYPKVKTAV FT DEFVAILGKIEKGAKEASKGATGDVIIGNTVKNGDAVPGEATSVNSLVKGIKEIVGVVL FT KEGKADADATKDDSKKDIGKLFTATTDANRADNAAAQAAAASIGAVTGADILQAIVQSK FT ENPVANSTDGIEKATDAAEIAVAPAKDNKKEIKDGAKKDAVIAAGIALRAMAKNGTFSI FT KNNEDAAVTTINSAAASAVNKILSTLIIAIRNTVDSGLKTINEALATVKQEDKSVEATN FT TAEATTSGQQAKN" FT misc_feature 1863..2075 FT /note="downstream homology sequence; DHS-L; site of FT recombination" FT gene 2113..2481 FT /pseudo FT /gene="vlpC" FT /locus_tag="BH_P00364" XX SQ Sequence 2625 BP; 955 A; 324 C; 590 G; 756 T; 0 other; gcaattgtaa ctaaaaagta aacccatttt aataaaaaaa tgtttgaagg atttgagtca 60 tttgcatttt aaagtcaagg gcaggttaag accaagctaa aaatcagaaa ccgcagcaaa 120 caaactagtt atgacatgct tgataagatc attgacgtag caaagcaagt gaggctattg 180 gtactgatag tgacccgatt ggtaatgttg ctaactctgc tgtggggggg tgctgctggc 240 gatgttacaa acccaataaa gggaattaag gcaattgtag acgtaatact taaagaagga 300 aaagctgttg ttagtgttgt tcccaaagat gcagttgtag caggagctat agcgttcaat 360 gagctaaggg tggtgttgct aatactgaat ttaatgatgt tgtgcttgca tttgaaggag 420 cggcagtaag tgtagtgatt caggcattag ataccctaat tattgcgata aagaaaactc 480 ttgatgaagt acttaaaaca gttaaagaag ctataaaaat taatgctaat gatatcccta 540 taaggcctta tcagagtgtc cctaaatcta ctgttagtaa ctgataatta ataagaaata 600 cataatcaaa taaagtcatt taagtagaat gctctatctt tcttgatgca tgagaggtat 660 ttccttattt atatccggct cttttactta aatagagcaa taaaggaggc acgtaaaaaa 720 atgagaaaaa gaataagtgc aataataatg actttattta tggtattagt aagctgtaat 780 agcggtgggg ttgcggaaga tcctaaaact gtgtatttaa catctatagc taatttaggg 840 aaaggatttt tagatgtttt tgtgactttt ggagatatgg ttactggagc ttttggtatt 900 aaggcagata ctaagaaaag tgatataggg aagtatttta ctgatattga gagcactatg 960 acatcagtta aaaagaagtt gcaagatgaa gttgctaaga atggtaacta tccaaaggta 1020 aagacagctg ttgacgaatt tgttgcaatc ttaggaaaga tcgagaaagg agcaaaagaa 1080 gcatctaaag gggctactgg tgatgttatt attgggaata ctgttaagaa tggtgatgct 1140 gtacctggag aagcaacaag tgtcaattct cttgttaaag gaattaaaga aatagttggg 1200 gtagtcttga aggaaggtaa ggcagatgct gatgctacta aagatgatag taagaaagat 1260 attggtaaat tatttaccgc aaccactgat gcgaatagag ctgataatgc ggcagctcaa 1320 gcagctgcag cgtcaatagg agcagtgaca ggtgctgata tcttgcaagc tatagtacaa 1380 tctaaggaaa atcctgttgc aaatagtact gatggaattg aaaaagcaac agatgcagct 1440 gagattgcag ttgctccagc taaagataat aaaaaagaga ttaaagatgg agcaaaaaaa 1500 gacgcagtta ttgctgcagg cattgcactg cgagcaatgg ctaagaatgg tacattttct 1560 attaaaaaca atgaagatgc ggctgtaacg acgataaata gtgcagcagc aagcgcagtg 1620 aacaagattt taagcactct aataatagca ataaggaata cagttgatag tggtttaaaa 1680 acaataaatg aggctcttgc tacagttaaa caagaagata aatctgtaga agcaactaat 1740 actgcagaag caacaactag tggtcagcaa gcgaaaaact agttaagggt aaatataaag 1800 gataaagtta ttgtaaggga aaagcttttc ttgtttttaa tgcaggaatg tagtttctct 1860 gattaagtaa gctgtaagag caggtaaaaa taaagtcaaa aaggaatagg aagctaggag 1920 tgtaatgctt ttagcttcta atgttattta gggagtgttt ctttgtatgt aaaattgttt 1980 atatgagtaa ggattgaata taaataattg caagtatgat attaagagta tgtttttatt 2040 gtaatcaaat aattaatact ttaaaagtaa gctaaatgtg tggtaagggc agcaaaaggg 2100 aaattgggat agatgttgga aagaaataaa ttaagtgcga taataatgac tttatttatg 2160 gtattagtaa gctgtaatag cggtggggtt gcggaagacc cccagagtaa atttttaaag 2220 tcagtaatag acttgggggg aatgattttt taaatgtgtt cacatcattt ggggatatgg 2280 ttgctggtgc atttggtttt aacaccaata ctaaaaagtc tgatattgga gtttacttca 2340 agacaacaag ataccgttca agttactcaa acagccctta aaaaatggat gataagtgtg 2400 ctatgaagat taattaatga tacgtctata agtcctgttc agagcacctt taaagctact 2460 attagcaatt agttaaataa atactagata ctaaaatatg aagtcattgc aaggaaaacg 2520 cttcttttat ctttgcataa gggaagggaa gtaagctttc cttttatttt aaaaaaactt 2580 gtaataagat agctgaaaga caacaaatgt aaagggcgaa tccgc 2625 //