ID CP000274; SV 1; linear; genomic DNA; STD; PRO; 8914 BP. XX AC CP000274; XX PR Project:PRJNA29637; XX DT 04-JUN-2006 (Rel. 88, Created) DT 25-MAR-2009 (Rel. 100, Last updated, Version 2) XX DE Borrelia hermsii DAH plasmid fragment 1025rc, complete sequence. XX KW . XX OS Borrelia hermsii DAH OC Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia. OG Plasmid unnamed XX RN [1] RC Erratum:[Mol Microbiol. 2006 Aug;61(3):838] RP 1-8914 RX DOI; 10.1111/j.1365-2958.2006.05177.x. RX PUBMED; 16796672. RA Dai Q., Restrepo B.I., Porcella S.F., Raffel S.J., Schwan T.G., RA Barbour A.G.; RT "Antigenic variation by Borrelia hermsii occurs through recombination RT between extragenic repetitive elements on linear plasmids"; RL Mol. Microbiol. 60(6):1329-1343(2006). XX RN [2] RP 1-8914 RA Dai Q., Restrepo B.I., Porcella S.F., Raffel S.J., Schwan T.G., RA Barbour A.G.; RT ; RL Submitted (02-MAR-2006) to the INSDC. RL Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, RL National Institutes of Allergy and Infectious Disease, National Institutes RL of Health, 903 S. 4th Street, Hamilton, MT 59840, USA XX FH Key Location/Qualifiers FH FT source 1..8914 FT /organism="Borrelia hermsii DAH" FT /plasmid="unnamed" FT /strain="DAH" FT /mol_type="genomic DNA" FT /clone="fragment 1025rc" FT /db_xref="taxon:314723" FT gene 1..192 FT /pseudo FT /locus_tag="BH_P00218" FT /note="paralog family 145" FT gene complement(327..548) FT /pseudo FT /gene="femD" FT /locus_tag="BH_P00219" FT gene 680..1327 FT /gene="vsp6silH" FT /locus_tag="BH_P00220" FT CDS 680..1327 FT /codon_start=1 FT /transl_table=11 FT /gene="vsp6silH" FT /locus_tag="BH_P00220" FT /product="Vsp6silH" FT /db_xref="GOA:Q1CNZ5" FT /db_xref="InterPro:IPR001800" FT /db_xref="UniProtKB/TrEMBL:Q1CNZ5" FT /protein_id="ABF82166.1" FT /translation="MRKRISAIIMTLFMVFTSCNNGGPELKSDEVAKSDGTVLDLAKIS FT KKIKEASAFAESVKEVETLVKSIDELAKAIGKKIKNDDDGFDTEANKNGSLLAGTLQLM FT FAVGTKLESLEKIAGISDEVKGKVIVVKTENTALITKLKGGDASLGKNDASDSDAKNAI FT DKSDVTGGKGKEELIKLNTAVDALLKAAEGEVEAAIKELTAPVKVEKPSQNN" FT misc_feature 1371..1583 FT /note="downstream homology sequence; DHS-b; site of FT recombination" FT gene 1627..2209 FT /pseudo FT /gene="vsp69asilH" FT /locus_tag="BH_P00221" FT gene 2441..3550 FT /gene="vlpA7H" FT /locus_tag="BH_P00222" FT CDS 2441..3550 FT /codon_start=1 FT /transl_table=11 FT /gene="vlpA7H" FT /locus_tag="BH_P00222" FT /product="VlpA7H" FT /db_xref="GOA:Q1CNZ4" FT /db_xref="InterPro:IPR000680" FT /db_xref="UniProtKB/TrEMBL:Q1CNZ4" FT /protein_id="ABF82167.1" FT /translation="MRKRISAIINKLNISIIIMTVVLMIGCGQQPEAGKTGVSGGVNGN FT LGNSLMELGRSAENAFYAFIELVSDVLGFTAKSDTTKQEVGGYFNSLGAKLGEASNDLE FT QVAVKAETGVDKSDSSKNPIREAVNEAKEVLGTLKGYVESLGTIGDSNPVGYANNAAGS FT GTTAADDELRKAFKALQEIVKAATDAGVKALKIGATTLQANGGADNKEGAKILATSGGN FT PAAADVAKAAAILSSVSGEEMLSSIVKSGENDAQLAAAADGNTSAISFAKGGSDAHLAG FT ANTPKAAAVAGGIALRSLVKTGKLAAGAADNATGGGKEVQGVGVAAANKLLRAVEDVIK FT KTVKNVLEKAKEKIDKARGSQEPVSESSK" FT misc_feature 3687..4328 FT /note="vsp26silH; silent site gene; expression may be FT mediated by recombination resulting in addition of start FT codon" FT misc_feature 4372..4584 FT /note="downstream homology sequence; DHS-a; site of FT recombination" FT gene 4621..5506 FT /pseudo FT /gene="vlpC" FT /locus_tag="BH_P00224" FT gene 6012..6599 FT /locus_tag="BH_P00225" FT CDS 6012..6599 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BH_P00225" FT /product="family 62-like protein" FT /db_xref="UniProtKB/TrEMBL:Q1CNZ3" FT /protein_id="ABF82168.1" FT /translation="MKRKDGVISDYELIWEGRFRDWYPNKYKFNCVPKETYGGHIRVRK FT KASDIKAKEIINQLKPEEAERIENERKEKRRLEIKRREEYLSKLFEREAKEREERLRKA FT REDEAYLKDRARESMLATLEKSRVVDMGVDIENNRDNSALYESMHNPPRPVEIVLKNNF FT EGFKTTKGISIANLGIMLPNEEQNQILGEKEI" FT gene 6601..7077 FT /locus_tag="BH_P00226" FT CDS 6601..7077 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BH_P00226" FT /product="BBG30-like protein" FT /db_xref="UniProtKB/TrEMBL:Q1CNZ2" FT /protein_id="ABF82169.1" FT /translation="MRFSLKYLARRLYIKRHRFWNTYMSDEVQSKRADDTIINFPILSP FT ADIDYEYVYAYVKDWVTKKYTDDLDIMINKIGNDDYYCETKRGSLMNNILDRIHEDYKE FT IFLGNLEKRVVDKNPEVVIKGSGDVGSLETEEASEGKLQAKQVKTAKKAKSASP" FT gene complement(7149..7811) FT /gene="bdrC1" FT /locus_tag="BH_P00227" FT CDS complement(7149..7811) FT /codon_start=1 FT /transl_table=11 FT /gene="bdrC1" FT /locus_tag="BH_P00227" FT /product="BdrC1" FT /db_xref="InterPro:IPR013326" FT /db_xref="UniProtKB/TrEMBL:Q1CNZ1" FT /protein_id="ABF82170.1" FT /translation="MGLPQPIVTQQMVIAELVKAGIDRDIATDLSYRYYRNELTYKDIE FT YLETTFNLKLEKVGASLKSDIKDLDNKIDTVENNLNIKIDNVRNELKSDIKDLDNKIDT FT VENNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNKIDTVENNLNIKIDNV FT RNELKSDIKDLDNKIDVNKMELKSTLRLHNWMFGTIITLNIGIFLTLISIINSVFGK" FT gene complement(7842..8645) FT /locus_tag="BH_P00228" FT CDS complement(7842..8645) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BH_P00228" FT /product="family 88-like protein" FT /db_xref="UniProtKB/TrEMBL:Q1CNZ0" FT /protein_id="ABF82171.1" FT /translation="MISIKNIFNKIKSKKFITKISTTDSLEINPKEIISFSKNYFLLSN FT STELKSIGIILSSGIPLSTLNNKNFTITNFTDNIISYTLSSGLQIKKHTLLNPKLITNA FT IYSLKKLNSTILAWKINRILKKLFLSNVITKHLESIYYTILNSSHRKNAFCFYNHSSSQ FT NLKHKHIKLVSKTTPLNSYKNLKFINSFQSLRIHTSNLLFYKNSNNKLYSNIATLIESF FT FLDNKSSKNLHTLKSYINLHLKQLGINYKLTNRIQKQLFSHILLQ" XX SQ Sequence 8914 BP; 3282 A; 1011 C; 1910 G; 2711 T; 0 other; gagagaaatg ggcaaactaa aatcattctt tgtagtggta ttgtatctgg caagacattt 60 ttagcatgtt atctattctt aaaaccctta cttataaata ggaatttgta ctgtgggggg 120 acaaataact ttattttgga taattcataa gaagttttag agattaatgt ttagggcagt 180 ttggagagat tactagtata ttaaaagcga aaatacaagc agtataacaa aaagttaagt 240 agcaaataca ggtcatataa taataggtaa aatgaattca agtaatattg cagaagtatg 300 ggcagcatat aagagtatgc atggacttaa gagaaaagat ttttgatttt aagtaatttt 360 atgatgctag agagtgctgt tagtagggct cttatttttg aggggtatgt aatattgcct 420 ccatttgatc tttctcttaa aatttttgct attaatgctt cattccgtaa aaattcagcc 480 atttttgtta agttggcacc accaacttca attttgtgaa cttttgtatt aaatggtgta 540 gttattttgc aatgtttagt gaggttgcat cattaacggc aacatccaaa ttgtttttaa 600 tgctcgtatg ataggaataa ctaagtttga agagcattgg gaagtgtatt agagacttgt 660 aaaaggggca cgtaaaaaaa tgagaaaaag aataagtgca ataataatga ctttatttat 720 ggtatttaca tcatgtaata atggaggtcc agagcttaaa agtgacgaag tggctaagtc 780 tgacggaaca gtacttgatt tagcaaaaat aagtaaaaag ataaaagagg ctagtgcttt 840 tgcagaaagc gttaaagaag tagagactct agttaagtca atagatgagc ttgctaaagc 900 tattggaaag aaaattaaaa atgatgatga tggctttgat actgaagcaa ataaaaatgg 960 atcattactc gcaggaacat tgcaattaat gtttgccgta ggaactaaat tggaatcttt 1020 agagaaaata gccggaattt ctgatgaagt gaagggcaag gttattgttg ttaagaccga 1080 aaatacagca ttgataacta aattgaaggg aggggatgct agtcttggta aaaatgatgc 1140 ttctgattct gatgcaaaaa atgctataga taaaagcgat gttactggag gcaaaggtaa 1200 ggaagagctt attaagttaa acacagcagt tgatgccttg ttaaaggcag ctgagggtga 1260 agtagaggct gcaattaaag agcttacagc tcctgttaag gtagaaaaac cttctcaaaa 1320 taactaacta gggaataaat aatttaagaa gttattataa gataagttaa ttaagtaagc 1380 tgtaagagca gggaaaaata aagtcaaaaa ggaataggaa gctaggagcg taatgctctt 1440 agcttctgat gttatttagg gaatgtttct ttgtatataa aattgtttat atgagtaaag 1500 attgaatata aataattgca agtatgatat taagagtatg tttttattgt aatcaaataa 1560 ttaatacttt aaaagtaagc taaatgtgtg gtaagggcaa aagggaaatt gggataggtg 1620 ttggaaagaa ataaattaag tacaataata atgatttatt tttttatatc ttatggtagt 1680 gcaggaccag cagagcaagg tcaagtaact aaatctgatg ggatagtaat tgattaagca 1740 aaagtaagta aaaaaaataa aagatgctag tacttttgta gcaagtgtta aagaagtaga 1800 gaccttggtt aagtcaatag atgagatcgt taaagctatt ggaaagaaaa ttaagcaaaa 1860 ttccgaagac cttgaagtgg ataatggtaa aaataataag aatggagagt tagttgcagg 1920 agcatttcaa gtaatgttga ctgtgaaagt taaattggga aaattaggga acacgcctga 1980 aatttctgaa gggctgaaag gaaagattat tgattctaag agcaaatgta aagaatttgt 2040 ggataaagta aaagcagatt ctgatatttc taaagcagag gctacagatg agcatgcaaa 2100 aagctataga tcgagtaaat aatcctgctg gagaaaaagg tggtgctgaa cttgtaaact 2160 taacaaatca ataggtgagt tgttagaggt tgttaacgaa gaagtataag ctgcaattat 2220 tcctgttaag gtagcaatac ctgttcaaaa taactaaatc atcagaacta tcgttagcta 2280 atagtttcct gtgccgaaaa caagaaaaga gttttcctta aatgacttta tttttcctgg 2340 cttttaccct ttacttaatt aacttatctt ataataactt cttaaattat ttattccctt 2400 agttagacaa tgcataagtt aaagagaggc acgtaaaaaa atgagaaaaa gaataagtgc 2460 aataattaat aagttaaata taagtataat tattatgaca gttgttctaa tgataggttg 2520 tggacaacaa ccagaagcag gtaagaccgg agtatcagga ggagtaaatg gaaatttagg 2580 caattcacta atggaattag gtaggagtgc ggagaatgct ttttacgcat ttatagagtt 2640 agtgtcagat gtgttgggat ttactgcaaa atcagataca actaagcaag aagtaggagg 2700 ttattttaac agcctaggtg cgaagcttgg agaggcgtca aatgacttgg aacaagtagc 2760 agtaaaagca gaaacaggtg ttgataaaag cgattcatca aaaaatccaa ttagagaagc 2820 ggttaatgaa gctaaggaag ttttaggtac attaaaagga tatgtagaat ctttaggaac 2880 aataggcgat tctaatccag taggttatgc aaataatgct gctggttcag gaacaacagc 2940 agctgatgat gaattaagga aagcttttaa agcattgcaa gaaatagtca aagcagcaac 3000 agatgcaggt gttaaagcat taaaaatagg agctactaca ctacaagcaa atggaggagc 3060 agataataaa gagggtgcta agatattagc tacaagtggt ggtaatccag cagcagcaga 3120 tgtagctaaa gcagcagcaa tactatcaag cgtaagtggt gaagagatgt taagctcaat 3180 agttaaatca ggagagaatg atgcgcagct agcagcagct gcagatggaa atacaagtgc 3240 aatttctttt gcaaaaggag gttcagatgc tcacttagca ggtgcaaata ctccaaaagc 3300 agcagcagta gcaggaggaa tagcattacg ttcattagtg aagacaggta aattagcagc 3360 aggagcagca gataatgcta caggaggggg gaaagaagta caaggagtag gagtggctgc 3420 agcaaataag ctgttaagag cggtagaaga tgtaattaag aagacagtaa agaatgttct 3480 tgagaaagca aaagaaaaaa tagataaagc aagaggttca caagagccag tttcagaatc 3540 aagtaagtga gaaggcagat taataagata aatagtaaat ttagattatt gaagaataaa 3600 agcagaaggc aatcttagag agatggatct aggttgcctt ctactttgtt ttaagtaaaa 3660 taagaagtta aatataatag tggaaaagaa taagtgcaat aataatgact ttgtttatgg 3720 tgtttatgtc atgtaataat ggagggccag agcttaaaag tgacgaagta gctaagtctg 3780 acggaacagt acttgatttg gcaaagataa gtaaaaagat caaagaggct agtgcttttg 3840 cagcaagtgt taaagaaata gagactttag ttaagtctat tgatgagctt gctaaagcta 3900 ttggaaaaaa gattaaaaat gatggaactt tggaagccat agctgataag aatggctcat 3960 taattgcagg ggtggttagt gttgctgaag ctgtggaaaa aaaattagga gagttgcaag 4020 tagcaggatt ccttaaaggc ttaaatgaaa aagttcaaga tgtggatgct aaggttaaag 4080 catttacaaa gaagttaaaa gataaacatg ttgttttggg agctgcagat ggagctacta 4140 cagatgataa tgcaaaaaaa gctatagatc gcgtaaatca agttaatggg gagaatggag 4200 cggaagaact tggcaagctc aacacagcag ttgatgcctt gttaaaggca gctgagggtg 4260 aagtagaagc tgcaattaca gagcttacag ttcctgttaa ggtagaaaaa ccttctcaaa 4320 ataactaact agggaataaa taatttaagt agttattata agataagtta attaagtaag 4380 ctgtaagagc agggaaaaat aaagtcaaaa aggaatagga agctaggagc gtaatgctct 4440 tagcttctaa tgttatttag ggaatgttta tttgtatata aaattgttta tatgagtaaa 4500 gattgaatat aaataattgc aagtatgata ttaagagtat gtttttattg taatcaaata 4560 attaatactt taaaagtaag ctaaatgtgt ggtaagggca gcaaaaggga aattggggta 4620 gatgttggaa attactttaa gagaatccaa ggtactgtaa cagatattaa gacaaagctt 4680 gagaaaatag ttttatacat gaaaagtgaa ggtaatctta acgcggttgg agtagagacc 4740 gcaataaaaa cactaattga taatacacgt agtaagatct agtaagataa tagaaagagc 4800 aaagcctgca atcgaggcta attggtattg agggtacgaa ctaattggca ataatgctgc 4860 tgtgttggtg ctgatgctgg tgacctactt gataatgttg ctgttgagac aatactggcg 4920 gtgctgctgg gattgggatt gatagtctat taagggggaa taaagatata gcaaatatag 4980 tacttggaaa agaaggaaat gctgatatag gtaccgataa aagagctgat ggtcttaccg 5040 caagaactgc tgctgttgat ggtgaagcag gaaaattgtt tgctgctaat gttggtaatg 5100 ctgctgccaa ttcaaagaag gcagcaatcg attcagctaa agcagttgga gcaagtaact 5160 ggagctgaca tactaaaagc tcttgttaaa gataatggtg atgttgttaa attagctata 5220 taaacaactg gtaatgttgg ttctgccctt aaatgcggaa gttgcaggag gtatggcatt 5280 aagagcgatg gctaaagatg tagtgctagt gatgcctact gctgttgata ttactacccc 5340 aagttaaaag gggcagctgt aagtgcagtt attaatgcat tagatacatt aactattact 5400 aataagaaaa actcttgatg taggacttaa aacagttaag gactctatga aaattagtct 5460 taattgtact cctattgctc ctgatcagat aacccctaaa gcttaatact aataactaaa 5520 aaaaagtcat ttaaagaaaa ctcttttttg ccttttataa agcaggaaaa ttgtttacca 5580 atgataatgc tgaaggtaat gcataagaaa aatgaggcat ggaaatgtgc aataataatg 5640 actttatttt tggtattagt aagctgtaat agcggtcctg tagaggatcc taaagttgtc 5700 tttttatctc tatggctgcg aaagccaatg gtgctgaagg agcgcaaacc gcagtagtta 5760 gtgcatcaat tggggctgta agcggtgttg atattttttt caagttattg ctgaatctgg 5820 taatgctgct aataacgata tttcgattaa tatagtaaag aattaagtaa caatgatgta 5880 acttacataa atgcattaat caatctagag acatcaatct tgagtacaaa ggtgaataca 5940 atattgaaga taccttagag catttcctaa agcaatttag caataggtgt aaatacaaag 6000 tatggatgat gatgaagcgt aaagatggcg tgattagcga ttatgagctc atatgggagg 6060 gaagatttag agattggtac ccaaataagt ataagtttaa ttgtgttcct aaagagactt 6120 atggcgggca tatacgagtt aggaaaaagg cttccgatat taaagcaaaa gagataataa 6180 atcaattgaa acctgaagag gcagaaagaa tagaaaatga gagaaaagaa aagcgcaggc 6240 ttgaaataaa gagaagggaa gaatatttga gtaagttgtt tgaacgtgaa gctaaagaaa 6300 gggaagagcg tttaagaaag gctagggaag atgaagctta tctaaaagac cgtgctaggg 6360 aaagtatgct tgctacttta gagaaaagta gggtagtgga tatgggagtt gatatagaga 6420 ataatagaga taattcagca ctctatgaga gtatgcataa tccaccacgt ccggttgaga 6480 ttgtgcttaa gaataatttt gaaggattta agactaccaa gggaatttct atagctaatt 6540 tagggatcat gcttccaaat gaagaacaga atcaaatttt aggtgaaaag gagatatgac 6600 atgaggttta gtttgaaata tctagcaaga aggctatata taaagcgcca taggttttgg 6660 aatacctata tgagcgatga agtgcagtct aagagagcag acgatacaat aattaatttt 6720 ccaatactta gccctgcaga cattgactat gaatatgtat atgcatacgt taaagattgg 6780 gtaacaaaga aatatacaga tgatcttgac attatgatta ataaaatagg caatgatgat 6840 tattattgtg aaacaaagcg tggttctttg atgaataata ttttggatag gattcatgaa 6900 gattataagg aaatatttct tggtaactta gaaaaaaggg ttgttgataa gaatcctgag 6960 gttgttatta aggggtctgg ggatgttggc tccttagaga cagaagaagc ttctgaaggg 7020 aaattacaag ctaagcaagt taagactgct aaaaaagcta agtcagcaag cccttagggt 7080 taatgctatt ttgatttatg tggattgcta attctatggt ctttgactac aagattagta 7140 atccgcattt acttgccaaa aactgaatta ataattgaaa ttaatgttaa aaaaattcct 7200 atattaagtg taataatagt cccaaacatc caattatgaa gtcttaatgt gctcttaagt 7260 tccattttgt taacatcaat cttgttatca aggtctttaa tatcagattt taattcattt 7320 ctaacgttat caatcttgat gttaagatta ttctcaacag tatcaatctt gttatcaagg 7380 tctttaatat cagattttaa ttcatttcta acgttatcaa tcttgttatc aaggtcttta 7440 atgtcagatt ttaattcatt tctaacgtta tcaatcttga tgttaagatt attctcaaca 7500 gtatcaatct tgttatcaag gtctttaatg tcagatttta attcatttct aacgttatca 7560 atcttgatgt taagattatt ctcaacagta tcaatcttgt tatcaaggtc tttaatgtca 7620 gattttagac ttgctccaac cttttcaagc ttaaggttaa aagtagtctc taaatactca 7680 atatctttat aagtaagctc attacgataa tatctgtaag acaaatcagt agcaatatct 7740 ctatcaatac cagctttaac aagttcagcg ataaccattt gttgagtaac tatcggttga 7800 ggaagtccca taaaatctcc ttataagtat tatacattgt tttattgcaa aaggatatga 7860 gagaatagtt gtttttgaat cctattagtt aatttataat taataccaag ttgtttgagg 7920 tgtagattaa tataagattt gagtgtatgt aagtttttac ttgatttatt atcaaggaaa 7980 aaggattcaa ttagggtagc aatattagag tacaatttat tattgctatt tttatagaat 8040 agtaaattag aagtatgtat gcgtaatgat tgaaaagaat taataaactt taagttttta 8100 tagctattta gaggagtagt tttgcttaca agtttgatat gcttatgttt tagattttgt 8160 gaagaggagt ggttataaaa gcaaaaagca ttttttctat gggaggaatt aagaatagta 8220 tagtaaatgg attctagatg tttagtgatg acgtttgata agaatagttt tttaagaata 8280 cgattaattt tccaagcaag gatagtagaa ttaagctttt ttagagaata aatggcgttt 8340 gtaattagtt ttgggttaag caaagtatgc tttttaattt gtaaaccaga agataaagta 8400 taagaaataa tattatctgt aaagttagtg atagtaaaat ttttgttatt tagagtggac 8460 agaggtatac cggaagagag gataatgcca attgatttaa gttctgtact atttgatagt 8520 aagaaataat ttttagagaa agaaataatt tctttaggat ttatttcaag tgaatcggta 8580 gtagatattt tggtaataaa ttttttagat ttgattttat taaaaatatt ttttatacta 8640 atcattgtat agaaatatat atctatttat aaaaatgtca actttggtat attttcgtga 8700 caactatggt gcattttcat agcaactttg tccattttgg cgtcaactca taaaaataag 8760 aaatgaaaaa aatcaacttt gttcattttc gtggcaactt tgttcatttt ggtatcaact 8820 ttgtacattt tcatagcaac tttagtcaat attataattc aaagaatctc atactaataa 8880 caaattatat ttataatttg ttattagtat gaga 8914 //